I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 13 23:14:33 +14 2025 I: pbuilder-time-stamp: 1749806073 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biopython_1.83+dfsg1-2.dsc] I: copying [./python-biopython_1.83+dfsg1.orig.tar.xz] I: copying [./python-biopython_1.83+dfsg1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Apr 17 11:34:48 2024 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.83+dfsg1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-biopython in python-biopython-1.83+dfsg1 dpkg-source: info: unpacking python-biopython_1.83+dfsg1.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.83+dfsg1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying croak-on-muscle5.patch dpkg-source: info: applying muscle3.patch dpkg-source: info: applying skip-xmlio-tests.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 13 09:14 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=737d8b267aa742c889eeb501b6eaa10d LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1310250 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NPvx9i1O/pbuilderrc_r4E0 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NPvx9i1O/b2 --logfile b2/build.log python-biopython_1.83+dfsg1-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 11 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-numpy, flex, python3-reportlab (>= 4.0.4-1~), hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, dialign, dssp, emboss, fasttree, mafft, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-pygments, python3-scipy, python3-setuptools, t-coffee, wise dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on python3-reportlab (>= 4.0.4-1~); however: Package python3-reportlab is not installed. pbuilder-satisfydepends-dummy depends on hevea; however: Package hevea is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on clustalo; however: Package clustalo is not installed. pbuilder-satisfydepends-dummy depends on dialign; however: Package dialign is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on emboss; however: Package emboss is not installed. pbuilder-satisfydepends-dummy depends on fasttree; however: Package fasttree is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on phylip; however: Package phylip is not installed. pbuilder-satisfydepends-dummy depends on prank; however: Package prank is not installed. pbuilder-satisfydepends-dummy depends on probcons; however: Package probcons is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-mysqldb; however: Package python3-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-mmtf; however: Package python3-mmtf is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-pygments; however: Package python3-pygments is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on t-coffee; however: Package t-coffee is not installed. pbuilder-satisfydepends-dummy depends on wise; however: Package wise is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} bwa{a} clustalo{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dialign{a} dssp{a} dwz{a} emboss{a} emboss-data{a} emboss-lib{a} fasttree{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} hevea{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} libabsl20230802{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libargtable2-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcifpp-data{a} libcifpp5{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhpdf-2.3.0{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libimagequant0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblqr-1-0{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmariadb3{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libnetpbm11t64{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libpq5{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} librav1e0{a} libraw23t64{a} libreadline8t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsub-override-perl{a} libsvtav1enc1d1{a} libsynctex2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyuv0{a} libzzip-0-13t64{a} m4{a} mafft{a} man-db{a} mariadb-common{a} media-types{a} mysql-common{a} ncbi-blast+{a} ncbi-data{a} netbase{a} netpbm{a} phylip{a} po-debconf{a} poppler-data{a} prank{a} preview-latex-style{a} probcons{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-isodate{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mmtf{a} python3-mpmath{a} python3-msgpack{a} python3-mysqldb{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-rdflib{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} t-coffee{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tk8.6-blt2.5{a} tzdata{a} ucf{a} unicode-data{a} wise{a} wise-data{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: amap-align ca-certificates clustalw curl dbus default-jre dialign-tx dvisvgm fonts-dejavu-extra fonts-droid-fallback fsa isympy-common javascript-common kalign krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libheif-plugin-aomenc libheif-plugin-x265 libldap-common libltdl-dev libmagickcore-6.q16-7-extra libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libspreadsheet-parseexcel-perl libwww-perl libx11-protocol-perl libxml-simple-perl lmodern lynx muscle mustang poa primer3 proda python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-olefile python3-pydot python3-pygraphviz python3-sparqlwrapper python3-yaml ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk tm-align wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 274 newly installed, 0 to remove and 0 not upgraded. Need to get 343 MB of archives. After unpacking 1730 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 flex arm64 2.6.4-8.2+b2 [413 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-1+b2 [329 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.43-5 [272 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.2+dfsg-1+b4 [408 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+6 [85.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 15 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libdav1d7 arm64 1.4.1-1 [251 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-dav1d arm64 1.17.6-1+b2 [9888 B] Get: 20 http://deb.debian.org/debian unstable/main arm64 libde265-0 arm64 1.0.15-1+b1 [151 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libheif-plugin-libde265 arm64 1.17.6-1+b2 [13.0 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libheif1 arm64 1.17.6-1+b2 [247 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.14-2+b1 [144 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.80.2-1 [1393 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 liblqr-1-0 arm64 0.4.2-2.1+b1 [26.7 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.4.7-7+b1 [393 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libraw23t64 arm64 0.21.2-2.1 [366 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.20-1 [41.5 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-4 [307 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-1 [143 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5.2 [67.1 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libmagickcore-6.q16-7t64 arm64 8:6.9.12.98+dfsg1-5.2 [1505 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libmagickwand-6.q16-7t64 arm64 8:6.9.12.98+dfsg1-5.2 [245 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 poppler-data all 0.4.12-1 [1601 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.3-1 [802 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.3-1 [1931 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.14+dfsg-1 [975 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.14-1 [732 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B] Get: 86 http://deb.debian.org/debian unstable/main arm64 bwa arm64 0.7.17-7+b3 [194 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libargtable2-0 arm64 13-2 [17.1 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 clustalo arm64 1.2.4-8 [232 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 96 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240422 [107 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 dialign arm64 2.2.1-12 [137 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libcifpp-data all 5.0.7.1-3 [452 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libcifpp5 arm64 5.0.7.1-3+b1 [743 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 dssp arm64 4.2.2-2 [603 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libaom3 arm64 3.8.2-2 [1528 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libabsl20230802 arm64 20230802.1-4 [432 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libgav1-1 arm64 0.19.0-2+b1 [481 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 librav1e0 arm64 0.7.1-2 [630 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 libsvtav1enc1d1 arm64 1.7.0+dfsg-2+b1 [1083 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libyuv0 arm64 0.0~git202401110.af6ac82-1 [123 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libavif16 arm64 1.0.4-3 [99.4 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libgd3 arm64 2.3.3-9+b3 [114 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libhpdf-2.3.0 arm64 2.3.0+dfsg-1+b2 [347 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 mysql-common all 5.8+1.1.0 [6636 B] Get: 122 http://deb.debian.org/debian unstable/main arm64 mariadb-common all 1:10.11.7-4 [25.9 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 libmariadb3 arm64 1:10.11.7-4 [165 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 126 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 128 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libpq5 arm64 16.3-1 [209 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 emboss-lib arm64 6.6.0+dfsg-15 [2702 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 emboss-data all 6.6.0+dfsg-15 [61.1 MB] Get: 136 http://deb.debian.org/debian unstable/main arm64 emboss arm64 6.6.0+dfsg-15 [1022 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 fasttree arm64 2.1.11-2 [172 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 fonts-lmodern all 2.005-1 [4540 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libgs-common all 10.03.0~dfsg-1 [148 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 libgs10-common all 10.03.0~dfsg-1 [474 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-13+b2 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-13+b2 [42.4 kB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.14.10-4+b1 [195 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-13+b2 [45.7 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.7-1.2+b1 [230 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 libidn12 arm64 1.42-2 [79.2 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 libijs-0.35 arm64 0.35-15.1+b1 [14.9 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libjbig2dec0 arm64 0.20-1+b2 [59.6 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB] Get: 153 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libgs10 arm64 10.03.0~dfsg-1 [2294 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 ghostscript arm64 10.03.0~dfsg-1 [50.3 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libnetpbm11t64 arm64 2:11.06.01-2 [175 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 netpbm arm64 2:11.06.01-2 [2018 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B] Get: 160 http://deb.debian.org/debian unstable/main arm64 libkpathsea6 arm64 2023.20230311.66589-9+b2 [151 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 libptexenc1 arm64 2023.20230311.66589-9+b2 [46.3 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libsynctex2 arm64 2023.20230311.66589-9+b2 [59.8 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9+b2 [105 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-1 [114 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-1 [105 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.0-3+b1 [478 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 8.3.0-2+b1 [2178 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libpotrace0 arm64 1.16-2+b1 [23.1 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libteckit0 arm64 2.5.12+ds1-1 [300 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libxi6 arm64 2:1.8.1-1 [77.5 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.2+b1 [56.7 kB] Get: 177 http://deb.debian.org/debian unstable/main arm64 texlive-binaries arm64 2023.20230311.66589-9+b2 [7353 kB] Get: 178 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 texlive-base all 2023.20240207-1 [22.0 MB] Get: 180 http://deb.debian.org/debian unstable/main arm64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 imagemagick-6.q16 arm64 8:6.9.12.98+dfsg1-5.2 [290 kB] Get: 182 http://deb.debian.org/debian unstable/main arm64 imagemagick arm64 8:6.9.12.98+dfsg1-5.2 [19.4 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 hevea arm64 2.36-2+b1 [2131 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libapache-pom-java all 29-2 [5276 B] Get: 185 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libcommons-parent-java all 56-1 [10.8 kB] Get: 187 http://deb.debian.org/debian unstable/main arm64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.2-1 [278 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.13-3+b1 [71.3 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14-20240429-1 [361 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 liblmdb0 arm64 0.9.31-1+b1 [43.0 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 libmbedcrypto7t64 arm64 2.28.8-1 [269 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libmbedx509-1t64 arm64 2.28.8-1 [131 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libmbedtls14t64 arm64 2.28.8-1 [160 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libpython3.11t64 arm64 3.11.9-1 [1814 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libpython3.11-dev arm64 3.11.9-1 [4358 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.11.8-1 [9564 B] Get: 208 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [1889 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.3-1 [1948 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.3-1 [4745 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.11.8-1 [1072 B] Get: 212 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1+b1 [221 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 mafft arm64 7.505-1 [933 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 ncbi-blast+ arm64 2.12.0+ds-4+b1 [11.6 MB] Get: 218 http://deb.debian.org/debian unstable/main arm64 phylip arm64 1:3.697+dfsg-4 [861 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 prank arm64 0.0.170427+dfsg-3 [326 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 preview-latex-style all 13.2-1 [350 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 probcons arm64 1.12-14 [112 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.3-1 [659 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.11.8-1 [1056 B] Get: 225 http://deb.debian.org/debian unstable/main arm64 python3.11-dev arm64 3.11.9-1 [501 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.11.8-1 [26.1 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.3-1 [499 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.11.8-1 [1072 B] Get: 229 http://deb.debian.org/debian unstable/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b3 [316 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.0-1 [139 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-8 [4219 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.0.7-3 [247 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 237 http://deb.debian.org/debian unstable/main arm64 python3-six all 1.16.0-6 [16.3 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.11.4-6 [17.5 MB] Get: 241 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.12-7 [3869 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.2.1-1 [1767 kB] Get: 247 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b3 [26.6 kB] Get: 248 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 249 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.46.0-1 [1510 kB] Get: 250 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.4.0-1 [80.3 kB] Get: 251 http://deb.debian.org/debian unstable/main arm64 python3-isodate all 0.6.1-2 [24.9 kB] Get: 252 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.5-1 [75.0 kB] Get: 253 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.3.0-2 [552 kB] Get: 254 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.12.3-1 [110 kB] Get: 255 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 10.3.0-2 [80.0 kB] Get: 256 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 257 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.0-1 [45.5 kB] Get: 258 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.6.3-2 [7978 kB] Get: 259 http://deb.debian.org/debian unstable/main arm64 python3-msgpack arm64 1.0.3-3+b1 [87.4 kB] Get: 260 http://deb.debian.org/debian unstable/main arm64 python3-mmtf all 1.1.3-1 [17.0 kB] Get: 261 http://deb.debian.org/debian unstable/main arm64 python3-mysqldb arm64 1.4.6-2+b2 [54.2 kB] Get: 262 http://deb.debian.org/debian unstable/main arm64 python3-networkx all 3.2.1-4 [14.2 MB] Get: 263 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 264 http://deb.debian.org/debian unstable/main arm64 python3-rdflib all 6.3.2-1 [395 kB] Get: 265 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 266 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.0-2 [1149 kB] Get: 267 http://deb.debian.org/debian unstable/main arm64 t-coffee arm64 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [916 kB] Get: 268 http://deb.debian.org/debian unstable/main arm64 texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 269 http://deb.debian.org/debian unstable/main arm64 texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 270 http://deb.debian.org/debian unstable/main arm64 texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 271 http://deb.debian.org/debian unstable/main arm64 texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 272 http://deb.debian.org/debian unstable/main arm64 texlive-latex-extra all 2023.20240207-1 [19.7 MB] Get: 273 http://deb.debian.org/debian unstable/main arm64 wise-data all 2.4.1-24 [76.0 kB] Get: 274 http://deb.debian.org/debian unstable/main arm64 wise arm64 2.4.1-24 [1022 kB] Fetched 343 MB in 5s (68.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19745 files and directories currently installed.) Preparing to unpack .../00-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../01-flex_2.6.4-8.2+b2_arm64.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package libfftw3-double3:arm64. Preparing to unpack .../02-libfftw3-double3_3.3.10-1+b2_arm64.deb ... Unpacking libfftw3-double3:arm64 (3.3.10-1+b2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../03-libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../04-libbrotli1_1.1.0-2+b3_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../05-libpng16-16t64_1.6.43-5_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.43-5) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../06-libfreetype6_2.13.2+dfsg-1+b4_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../07-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../08-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../09-libfontenc1_1%3a1.1.8-1_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../10-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../11-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../12-xfonts-utils_1%3a7.7+6_arm64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../13-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../14-fontconfig-config_2.15.0-1.1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../15-libfontconfig1_2.15.0-1.1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../16-libsharpyuv0_1.4.0-0.1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1) ... Selecting previously unselected package libdav1d7:arm64. Preparing to unpack .../17-libdav1d7_1.4.1-1_arm64.deb ... Unpacking libdav1d7:arm64 (1.4.1-1) ... Selecting previously unselected package libheif-plugin-dav1d:arm64. Preparing to unpack .../18-libheif-plugin-dav1d_1.17.6-1+b2_arm64.deb ... Unpacking libheif-plugin-dav1d:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libde265-0:arm64. Preparing to unpack .../19-libde265-0_1.0.15-1+b1_arm64.deb ... Unpacking libde265-0:arm64 (1.0.15-1+b1) ... Selecting previously unselected package libheif-plugin-libde265:arm64. Preparing to unpack .../20-libheif-plugin-libde265_1.17.6-1+b2_arm64.deb ... Unpacking libheif-plugin-libde265:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libheif1:arm64. Preparing to unpack .../21-libheif1_1.17.6-1+b2_arm64.deb ... Unpacking libheif1:arm64 (1.17.6-1+b2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../22-libjbig0_2.1-6.1+b1_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../23-libjpeg62-turbo_1%3a2.1.5-3_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../24-liblcms2-2_2.14-2+b1_arm64.deb ... Unpacking liblcms2-2:arm64 (2.14-2+b1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../25-libglib2.0-0t64_2.80.2-1_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.80.2-1) ... Selecting previously unselected package liblqr-1-0:arm64. Preparing to unpack .../26-liblqr-1-0_0.4.2-2.1+b1_arm64.deb ... Unpacking liblqr-1-0:arm64 (0.4.2-2.1+b1) ... Selecting previously unselected package libltdl7:arm64. Preparing to unpack .../27-libltdl7_2.4.7-7+b1_arm64.deb ... Unpacking libltdl7:arm64 (2.4.7-7+b1) ... Selecting previously unselected package libopenjp2-7:arm64. Preparing to unpack .../28-libopenjp2-7_2.5.0-2+b3_arm64.deb ... Unpacking libopenjp2-7:arm64 (2.5.0-2+b3) ... Selecting previously unselected package libraw23t64:arm64. Preparing to unpack .../29-libraw23t64_0.21.2-2.1_arm64.deb ... Unpacking libraw23t64:arm64 (0.21.2-2.1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../30-libdeflate0_1.20-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.20-1) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../31-liblerc4_4.0.0+ds-4+b1_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-4+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../32-libwebp7_1.4.0-0.1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../33-libtiff6_4.5.1+git230720-4_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-4) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../34-libwebpdemux2_1.4.0-0.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (1.4.0-0.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../35-libwebpmux3_1.4.0-0.1_arm64.deb ... Unpacking libwebpmux3:arm64 (1.4.0-0.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../36-libxau6_1%3a1.0.9-1+b1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1+b1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../37-libbsd0_0.12.2-1_arm64.deb ... Unpacking libbsd0:arm64 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../38-libxdmcp6_1%3a1.1.2-3+b1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../39-libxcb1_1.17.0-1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../40-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../41-libx11-6_2%3a1.8.7-1+b1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.7-1+b1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../42-libxext6_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../43-libicu72_72.1-4+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-4+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../44-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../45-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5.2_all.deb ... Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5.2) ... Selecting previously unselected package libmagickcore-6.q16-7t64:arm64. Preparing to unpack .../46-libmagickcore-6.q16-7t64_8%3a6.9.12.98+dfsg1-5.2_arm64.deb ... Unpacking libmagickcore-6.q16-7t64:arm64 (8:6.9.12.98+dfsg1-5.2) ... Selecting previously unselected package libmagickwand-6.q16-7t64:arm64. Preparing to unpack .../47-libmagickwand-6.q16-7t64_8%3a6.9.12.98+dfsg1-5.2_arm64.deb ... Unpacking libmagickwand-6.q16-7t64:arm64 (8:6.9.12.98+dfsg1-5.2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../48-poppler-data_0.4.12-1_all.deb ... Unpacking poppler-data (0.4.12-1) ... Selecting previously unselected package libpython3.11-minimal:arm64. Preparing to unpack .../49-libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../50-python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22053 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23045 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_arm64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40-8_arm64.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.7-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_arm64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../018-libtcl8.6_8.6.14+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.14+dfsg-1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../019-libxrender1_1%3a0.9.10-1.1+b1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../020-libxft2_2.3.6-1+b1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../021-libxss1_1%3a1.2.3-1+b1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../022-libtk8.6_8.6.14-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.14-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../023-tk8.6-blt2.5_2.5.3+dfsg-7_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. Preparing to unpack .../024-blt_2.5.3+dfsg-7_arm64.deb ... Unpacking blt (2.5.3+dfsg-7) ... Selecting previously unselected package bwa. Preparing to unpack .../025-bwa_0.7.17-7+b3_arm64.deb ... Unpacking bwa (0.7.17-7+b3) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../026-libargtable2-0_13-2_arm64.deb ... Unpacking libargtable2-0 (13-2) ... Selecting previously unselected package clustalo. Preparing to unpack .../027-clustalo_1.2.4-8_arm64.deb ... Unpacking clustalo (1.2.4-8) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../028-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../029-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../030-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../031-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../032-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../033-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../034-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../035-libelf1t64_0.191-1+b1_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../036-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../037-gettext_0.21-14+b1_arm64.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../038-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../039-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../040-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../041-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../042-python3-lib2to3_3.12.3-1_all.deb ... Unpacking python3-lib2to3 (3.12.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../043-python3-distutils_3.12.3-1_all.deb ... Unpacking python3-distutils (3.12.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../044-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../045-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package dialign. Preparing to unpack .../046-dialign_2.2.1-12_arm64.deb ... Unpacking dialign (2.2.1-12) ... Selecting previously unselected package libcifpp-data. Preparing to unpack .../047-libcifpp-data_5.0.7.1-3_all.deb ... Unpacking libcifpp-data (5.0.7.1-3) ... Selecting previously unselected package libcifpp5:arm64. Preparing to unpack .../048-libcifpp5_5.0.7.1-3+b1_arm64.deb ... Unpacking libcifpp5:arm64 (5.0.7.1-3+b1) ... Selecting previously unselected package dssp. Preparing to unpack .../049-dssp_4.2.2-2_arm64.deb ... Unpacking dssp (4.2.2-2) ... Selecting previously unselected package libaom3:arm64. Preparing to unpack .../050-libaom3_3.8.2-2_arm64.deb ... Unpacking libaom3:arm64 (3.8.2-2) ... Selecting previously unselected package libabsl20230802:arm64. Preparing to unpack .../051-libabsl20230802_20230802.1-4_arm64.deb ... Unpacking libabsl20230802:arm64 (20230802.1-4) ... Selecting previously unselected package libgav1-1:arm64. Preparing to unpack .../052-libgav1-1_0.19.0-2+b1_arm64.deb ... Unpacking libgav1-1:arm64 (0.19.0-2+b1) ... Selecting previously unselected package librav1e0:arm64. Preparing to unpack .../053-librav1e0_0.7.1-2_arm64.deb ... Unpacking librav1e0:arm64 (0.7.1-2) ... Selecting previously unselected package libsvtav1enc1d1:arm64. Preparing to unpack .../054-libsvtav1enc1d1_1.7.0+dfsg-2+b1_arm64.deb ... Unpacking libsvtav1enc1d1:arm64 (1.7.0+dfsg-2+b1) ... Selecting previously unselected package libyuv0:arm64. Preparing to unpack .../055-libyuv0_0.0~git202401110.af6ac82-1_arm64.deb ... Unpacking libyuv0:arm64 (0.0~git202401110.af6ac82-1) ... Selecting previously unselected package libavif16:arm64. Preparing to unpack .../056-libavif16_1.0.4-3_arm64.deb ... Unpacking libavif16:arm64 (1.0.4-3) ... Selecting previously unselected package libxpm4:arm64. Preparing to unpack .../057-libxpm4_1%3a3.5.17-1+b1_arm64.deb ... Unpacking libxpm4:arm64 (1:3.5.17-1+b1) ... Selecting previously unselected package libgd3:arm64. Preparing to unpack .../058-libgd3_2.3.3-9+b3_arm64.deb ... Unpacking libgd3:arm64 (2.3.3-9+b3) ... Selecting previously unselected package libhpdf-2.3.0:arm64. Preparing to unpack .../059-libhpdf-2.3.0_2.3.0+dfsg-1+b2_arm64.deb ... Unpacking libhpdf-2.3.0:arm64 (2.3.0+dfsg-1+b2) ... Selecting previously unselected package mysql-common. Preparing to unpack .../060-mysql-common_5.8+1.1.0_all.deb ... Unpacking mysql-common (5.8+1.1.0) ... Selecting previously unselected package mariadb-common. Preparing to unpack .../061-mariadb-common_1%3a10.11.7-4_all.deb ... Unpacking mariadb-common (1:10.11.7-4) ... Selecting previously unselected package libmariadb3:arm64. Preparing to unpack .../062-libmariadb3_1%3a10.11.7-4_arm64.deb ... Unpacking libmariadb3:arm64 (1:10.11.7-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../063-libkrb5support0_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../064-libcom-err2_1.47.1~rc2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1~rc2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../065-libk5crypto3_1.20.1-6+b1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../066-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../067-libkrb5-3_1.20.1-6+b1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../068-libgssapi-krb5-2_1.20.1-6+b1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../069-libsasl2-modules-db_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../070-libsasl2-2_2.1.28+dfsg1-6_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../071-libldap-2.5-0_2.5.17+dfsg-1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Selecting previously unselected package libpq5:arm64. Preparing to unpack .../072-libpq5_16.3-1_arm64.deb ... Unpacking libpq5:arm64 (16.3-1) ... Selecting previously unselected package emboss-lib. Preparing to unpack .../073-emboss-lib_6.6.0+dfsg-15_arm64.deb ... Unpacking emboss-lib (6.6.0+dfsg-15) ... Selecting previously unselected package emboss-data. Preparing to unpack .../074-emboss-data_6.6.0+dfsg-15_all.deb ... Unpacking emboss-data (6.6.0+dfsg-15) ... Selecting previously unselected package emboss. Preparing to unpack .../075-emboss_6.6.0+dfsg-15_arm64.deb ... Unpacking emboss (6.6.0+dfsg-15) ... Selecting previously unselected package fasttree. Preparing to unpack .../076-fasttree_2.1.11-2_arm64.deb ... Unpacking fasttree (2.1.11-2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../077-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../078-fonts-lyx_2.4.0~RC4-1_all.deb ... Unpacking fonts-lyx (2.4.0~RC4-1) ... Selecting previously unselected package libgs-common. Preparing to unpack .../079-libgs-common_10.03.0~dfsg-1_all.deb ... Unpacking libgs-common (10.03.0~dfsg-1) ... Selecting previously unselected package libgs10-common. Preparing to unpack .../080-libgs10-common_10.03.0~dfsg-1_all.deb ... Unpacking libgs10-common (10.03.0~dfsg-1) ... Selecting previously unselected package libavahi-common-data:arm64. Preparing to unpack .../081-libavahi-common-data_0.8-13+b2_arm64.deb ... Unpacking libavahi-common-data:arm64 (0.8-13+b2) ... Selecting previously unselected package libavahi-common3:arm64. Preparing to unpack .../082-libavahi-common3_0.8-13+b2_arm64.deb ... Unpacking libavahi-common3:arm64 (0.8-13+b2) ... Selecting previously unselected package libdbus-1-3:arm64. Preparing to unpack .../083-libdbus-1-3_1.14.10-4+b1_arm64.deb ... Unpacking libdbus-1-3:arm64 (1.14.10-4+b1) ... Selecting previously unselected package libavahi-client3:arm64. Preparing to unpack .../084-libavahi-client3_0.8-13+b2_arm64.deb ... Unpacking libavahi-client3:arm64 (0.8-13+b2) ... Selecting previously unselected package libcups2t64:arm64. Preparing to unpack .../085-libcups2t64_2.4.7-1.2+b1_arm64.deb ... Unpacking libcups2t64:arm64 (2.4.7-1.2+b1) ... Selecting previously unselected package libidn12:arm64. Preparing to unpack .../086-libidn12_1.42-2_arm64.deb ... Unpacking libidn12:arm64 (1.42-2) ... Selecting previously unselected package libijs-0.35:arm64. Preparing to unpack .../087-libijs-0.35_0.35-15.1+b1_arm64.deb ... Unpacking libijs-0.35:arm64 (0.35-15.1+b1) ... Selecting previously unselected package libjbig2dec0:arm64. Preparing to unpack .../088-libjbig2dec0_0.20-1+b2_arm64.deb ... Unpacking libjbig2dec0:arm64 (0.20-1+b2) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../089-libpaper1_1.1.29+b1_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29+b1) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../090-libice6_2%3a1.0.10-1+b1_arm64.deb ... Unpacking libice6:arm64 (2:1.0.10-1+b1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../091-libsm6_2%3a1.2.3-1+b1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.3-1+b1) ... Selecting previously unselected package libxt6t64:arm64. Preparing to unpack .../092-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... Selecting previously unselected package libgs10:arm64. Preparing to unpack .../093-libgs10_10.03.0~dfsg-1_arm64.deb ... Unpacking libgs10:arm64 (10.03.0~dfsg-1) ... Selecting previously unselected package ghostscript. Preparing to unpack .../094-ghostscript_10.03.0~dfsg-1_arm64.deb ... Unpacking ghostscript (10.03.0~dfsg-1) ... Selecting previously unselected package libnetpbm11t64:arm64. Preparing to unpack .../095-libnetpbm11t64_2%3a11.06.01-2_arm64.deb ... Unpacking libnetpbm11t64:arm64 (2:11.06.01-2) ... Selecting previously unselected package netpbm. Preparing to unpack .../096-netpbm_2%3a11.06.01-2_arm64.deb ... Unpacking netpbm (2:11.06.01-2) ... Selecting previously unselected package tex-common. Preparing to unpack .../097-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../098-libpaper-utils_1.1.29+b1_arm64.deb ... Unpacking libpaper-utils (1.1.29+b1) ... Selecting previously unselected package libkpathsea6:arm64. Preparing to unpack .../099-libkpathsea6_2023.20230311.66589-9+b2_arm64.deb ... Unpacking libkpathsea6:arm64 (2023.20230311.66589-9+b2) ... Selecting previously unselected package libptexenc1:arm64. Preparing to unpack .../100-libptexenc1_2023.20230311.66589-9+b2_arm64.deb ... Unpacking libptexenc1:arm64 (2023.20230311.66589-9+b2) ... Selecting previously unselected package libsynctex2:arm64. Preparing to unpack .../101-libsynctex2_2023.20230311.66589-9+b2_arm64.deb ... Unpacking libsynctex2:arm64 (2023.20230311.66589-9+b2) ... Selecting previously unselected package libtexlua53-5:arm64. Preparing to unpack .../102-libtexlua53-5_2023.20230311.66589-9+b2_arm64.deb ... Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9+b2) ... Selecting previously unselected package t1utils. Preparing to unpack .../103-t1utils_1.41-4_arm64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../104-libpixman-1-0_0.42.2-1+b1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.42.2-1+b1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../105-libxcb-render0_1.17.0-1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../106-libxcb-shm0_1.17.0-1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../107-libcairo2_1.18.0-3+b1_arm64.deb ... Unpacking libcairo2:arm64 (1.18.0-3+b1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../108-libgraphite2-3_1.3.14-2_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../109-libharfbuzz0b_8.3.0-2+b1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (8.3.0-2+b1) ... Selecting previously unselected package libpotrace0:arm64. Preparing to unpack .../110-libpotrace0_1.16-2+b1_arm64.deb ... Unpacking libpotrace0:arm64 (1.16-2+b1) ... Selecting previously unselected package libteckit0:arm64. Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_arm64.deb ... Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... Selecting previously unselected package libxmu6:arm64. Preparing to unpack .../112-libxmu6_2%3a1.1.3-3+b2_arm64.deb ... Unpacking libxmu6:arm64 (2:1.1.3-3+b2) ... Selecting previously unselected package libxaw7:arm64. Preparing to unpack .../113-libxaw7_2%3a1.0.14-1+b2_arm64.deb ... Unpacking libxaw7:arm64 (2:1.0.14-1+b2) ... Selecting previously unselected package libxi6:arm64. Preparing to unpack .../114-libxi6_2%3a1.8.1-1_arm64.deb ... Unpacking libxi6:arm64 (2:1.8.1-1) ... Selecting previously unselected package libzzip-0-13t64:arm64. Preparing to unpack .../115-libzzip-0-13t64_0.13.72+dfsg.1-1.2+b1_arm64.deb ... Unpacking libzzip-0-13t64:arm64 (0.13.72+dfsg.1-1.2+b1) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../116-texlive-binaries_2023.20230311.66589-9+b2_arm64.deb ... Unpacking texlive-binaries (2023.20230311.66589-9+b2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../117-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../118-texlive-base_2023.20240207-1_all.deb ... Unpacking texlive-base (2023.20240207-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../119-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package imagemagick-6.q16. Preparing to unpack .../120-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5.2_arm64.deb ... Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5.2) ... Selecting previously unselected package imagemagick. Preparing to unpack .../121-imagemagick_8%3a6.9.12.98+dfsg1-5.2_arm64.deb ... Unpacking imagemagick (8:6.9.12.98+dfsg1-5.2) ... Selecting previously unselected package hevea. Preparing to unpack .../122-hevea_2.36-2+b1_arm64.deb ... Unpacking hevea (2.36-2+b1) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../123-libapache-pom-java_29-2_all.deb ... Unpacking libapache-pom-java (29-2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../124-libblas3_3.12.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-3) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../125-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../126-libcommons-logging-java_1.3.0-1_all.deb ... Unpacking libcommons-logging-java (1.3.0-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../127-libexpat1-dev_2.6.2-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.2-1) ... Selecting previously unselected package libfontbox-java. Preparing to unpack .../128-libfontbox-java_1%3a1.8.16-5_all.deb ... Unpacking libfontbox-java (1:1.8.16-5) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../129-libfribidi0_1.0.13-3+b1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.13-3+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../130-libgfortran5_14-20240429-1_arm64.deb ... Unpacking libgfortran5:arm64 (14-20240429-1) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../131-libimagequant0_2.18.0-1+b1_arm64.deb ... Unpacking libimagequant0:arm64 (2.18.0-1+b1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../132-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../133-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../134-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../135-libjs-sphinxdoc_7.2.6-6_all.deb ... Unpacking libjs-sphinxdoc (7.2.6-6) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../136-liblapack3_3.12.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-3) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../137-liblbfgsb0_3.0+dfsg.4-1+b1_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package liblmdb0:arm64. Preparing to unpack .../138-liblmdb0_0.9.31-1+b1_arm64.deb ... Unpacking liblmdb0:arm64 (0.9.31-1+b1) ... Selecting previously unselected package libmbedcrypto7t64:arm64. Preparing to unpack .../139-libmbedcrypto7t64_2.28.8-1_arm64.deb ... Unpacking libmbedcrypto7t64:arm64 (2.28.8-1) ... Selecting previously unselected package libmbedx509-1t64:arm64. Preparing to unpack .../140-libmbedx509-1t64_2.28.8-1_arm64.deb ... Unpacking libmbedx509-1t64:arm64 (2.28.8-1) ... Selecting previously unselected package libmbedtls14t64:arm64. Preparing to unpack .../141-libmbedtls14t64_2.28.8-1_arm64.deb ... Unpacking libmbedtls14t64:arm64 (2.28.8-1) ... Selecting previously unselected package libpdfbox-java. Preparing to unpack .../142-libpdfbox-java_1%3a1.8.16-5_all.deb ... Unpacking libpdfbox-java (1:1.8.16-5) ... Selecting previously unselected package libpython3.11t64:arm64. Preparing to unpack .../143-libpython3.11t64_3.11.9-1_arm64.deb ... Unpacking libpython3.11t64:arm64 (3.11.9-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../144-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libpython3.11-dev:arm64. Preparing to unpack .../145-libpython3.11-dev_3.11.9-1_arm64.deb ... Unpacking libpython3.11-dev:arm64 (3.11.9-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../146-libpython3-dev_3.11.8-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.11.8-1) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../147-libpython3.12-stdlib_3.12.3-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../148-libpython3.12t64_3.12.3-1_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../149-libpython3.12-dev_3.12.3-1_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.3-1) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../150-libpython3-all-dev_3.11.8-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.11.8-1) ... Selecting previously unselected package libqhull-r8.0:arm64. Preparing to unpack .../151-libqhull-r8.0_2020.2-6+b1_arm64.deb ... Unpacking libqhull-r8.0:arm64 (2020.2-6+b1) ... Selecting previously unselected package libraqm0:arm64. Preparing to unpack .../152-libraqm0_0.10.1-1+b1_arm64.deb ... Unpacking libraqm0:arm64 (0.10.1-1+b1) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../153-libxslt1.1_1.1.35-1+b1_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1+b1) ... Selecting previously unselected package mafft. Preparing to unpack .../154-mafft_7.505-1_arm64.deb ... Unpacking mafft (7.505-1) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../155-ncbi-data_6.1.20170106+dfsg2-2_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg2-2) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../156-ncbi-blast+_2.12.0+ds-4+b1_arm64.deb ... Unpacking ncbi-blast+ (2.12.0+ds-4+b1) ... Selecting previously unselected package phylip. Preparing to unpack .../157-phylip_1%3a3.697+dfsg-4_arm64.deb ... Unpacking phylip (1:3.697+dfsg-4) ... Selecting previously unselected package prank. Preparing to unpack .../158-prank_0.0.170427+dfsg-3_arm64.deb ... Unpacking prank (0.0.170427+dfsg-3) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../159-preview-latex-style_13.2-1_all.deb ... Unpacking preview-latex-style (13.2-1) ... Selecting previously unselected package probcons. Preparing to unpack .../160-probcons_1.12-14_arm64.deb ... Unpacking probcons (1.12-14) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../161-python-matplotlib-data_3.6.3-2_all.deb ... Unpacking python-matplotlib-data (3.6.3-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../162-python3.12_3.12.3-1_arm64.deb ... Unpacking python3.12 (3.12.3-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../163-python3-all_3.11.8-1_arm64.deb ... Unpacking python3-all (3.11.8-1) ... Selecting previously unselected package python3.11-dev. Preparing to unpack .../164-python3.11-dev_3.11.9-1_arm64.deb ... Unpacking python3.11-dev (3.11.9-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../165-python3-dev_3.11.8-1_arm64.deb ... Unpacking python3-dev (3.11.8-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../166-python3.12-dev_3.12.3-1_arm64.deb ... Unpacking python3.12-dev (3.12.3-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../167-python3-all-dev_3.11.8-1_arm64.deb ... Unpacking python3-all-dev (3.11.8-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../168-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-attr. Preparing to unpack .../169-python3-attr_23.2.0-2_all.deb ... Unpacking python3-attr (23.2.0-2) ... Selecting previously unselected package python3-brotli. Preparing to unpack .../170-python3-brotli_1.1.0-2+b3_arm64.deb ... Unpacking python3-brotli (1.1.0-2+b3) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../171-python3-cairo_1.26.0-1_arm64.deb ... Unpacking python3-cairo (1.26.0-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../172-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../173-python3-numpy_1%3a1.26.4+ds-8_arm64.deb ... Unpacking python3-numpy (1:1.26.4+ds-8) ... Selecting previously unselected package python3-contourpy. Preparing to unpack .../174-python3-contourpy_1.0.7-3_arm64.deb ... Unpacking python3-contourpy (1.0.7-3) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../175-python3-cycler_0.12.1-1_all.deb ... Unpacking python3-cycler (0.12.1-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../176-python3-six_1.16.0-6_all.deb ... Unpacking python3-six (1.16.0-6) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../177-python3-dateutil_2.9.0-2_all.deb ... Unpacking python3-dateutil (2.9.0-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../178-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../179-python3-scipy_1.11.4-6_arm64.deb ... Unpacking python3-scipy (1.11.4-6) ... Selecting previously unselected package python3-ufolib2. Preparing to unpack .../180-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... Selecting previously unselected package python3-mpmath. Preparing to unpack .../181-python3-mpmath_1.3.0-1_all.deb ... Unpacking python3-mpmath (1.3.0-1) ... Selecting previously unselected package python3-sympy. Preparing to unpack .../182-python3-sympy_1.12-7_all.deb ... Unpacking python3-sympy (1.12-7) ... Selecting previously unselected package python3-tz. Preparing to unpack .../183-python3-tz_2024.1-2_all.deb ... Unpacking python3-tz (2024.1-2) ... Selecting previously unselected package python3-fs. Preparing to unpack .../184-python3-fs_2.4.16-4_all.deb ... Unpacking python3-fs (2.4.16-4) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../185-python3-lxml_5.2.1-1_arm64.deb ... Unpacking python3-lxml:arm64 (5.2.1-1) ... Selecting previously unselected package python3-lz4. Preparing to unpack .../186-python3-lz4_4.0.2+dfsg-1+b3_arm64.deb ... Unpacking python3-lz4 (4.0.2+dfsg-1+b3) ... Selecting previously unselected package unicode-data. Preparing to unpack .../187-unicode-data_15.1.0-1_all.deb ... Unpacking unicode-data (15.1.0-1) ... Selecting previously unselected package python3-fonttools. Preparing to unpack .../188-python3-fonttools_4.46.0-1_arm64.deb ... Unpacking python3-fonttools (4.46.0-1) ... Selecting previously unselected package python3-freetype. Preparing to unpack .../189-python3-freetype_2.4.0-1_all.deb ... Unpacking python3-freetype (2.4.0-1) ... Selecting previously unselected package python3-isodate. Preparing to unpack .../190-python3-isodate_0.6.1-2_all.deb ... Unpacking python3-isodate (0.6.1-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../191-python3-kiwisolver_1.4.5-1_arm64.deb ... Unpacking python3-kiwisolver (1.4.5-1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../192-python3-pil_10.3.0-2_arm64.deb ... Unpacking python3-pil:arm64 (10.3.0-2) ... Selecting previously unselected package python3-tk:arm64. Preparing to unpack .../193-python3-tk_3.12.3-1_arm64.deb ... Unpacking python3-tk:arm64 (3.12.3-1) ... Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../194-python3-pil.imagetk_10.3.0-2_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (10.3.0-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../195-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../196-python3-packaging_24.0-1_all.deb ... Unpacking python3-packaging (24.0-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../197-python3-matplotlib_3.6.3-2_arm64.deb ... Unpacking python3-matplotlib (3.6.3-2) ... Selecting previously unselected package python3-msgpack. Preparing to unpack .../198-python3-msgpack_1.0.3-3+b1_arm64.deb ... Unpacking python3-msgpack (1.0.3-3+b1) ... Selecting previously unselected package python3-mmtf. Preparing to unpack .../199-python3-mmtf_1.1.3-1_all.deb ... Unpacking python3-mmtf (1.1.3-1) ... Selecting previously unselected package python3-mysqldb. Preparing to unpack .../200-python3-mysqldb_1.4.6-2+b2_arm64.deb ... Unpacking python3-mysqldb (1.4.6-2+b2) ... Selecting previously unselected package python3-networkx. Preparing to unpack .../201-python3-networkx_3.2.1-4_all.deb ... Unpacking python3-networkx (3.2.1-4) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../202-python3-pygments_2.17.2+dfsg-1_all.deb ... Unpacking python3-pygments (2.17.2+dfsg-1) ... Selecting previously unselected package python3-rdflib. Preparing to unpack .../203-python3-rdflib_6.3.2-1_all.deb ... Unpacking python3-rdflib (6.3.2-1) ... Selecting previously unselected package python3-rlpycairo. Preparing to unpack .../204-python3-rlpycairo_0.3.0-3_all.deb ... Unpacking python3-rlpycairo (0.3.0-3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../205-python3-reportlab_4.2.0-2_all.deb ... Unpacking python3-reportlab (4.2.0-2) ... Selecting previously unselected package t-coffee. Preparing to unpack .../206-t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_arm64.deb ... Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../207-texlive-fonts-recommended_2023.20240207-1_all.deb ... Unpacking texlive-fonts-recommended (2023.20240207-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../208-texlive-latex-base_2023.20240207-1_all.deb ... Unpacking texlive-latex-base (2023.20240207-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../209-texlive-latex-recommended_2023.20240207-1_all.deb ... Unpacking texlive-latex-recommended (2023.20240207-1) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../210-texlive-pictures_2023.20240207-1_all.deb ... Unpacking texlive-pictures (2023.20240207-1) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../211-texlive-latex-extra_2023.20240207-1_all.deb ... Unpacking texlive-latex-extra (2023.20240207-1) ... Selecting previously unselected package wise-data. Preparing to unpack .../212-wise-data_2.4.1-24_all.deb ... Unpacking wise-data (2.4.1-24) ... Selecting previously unselected package wise. Preparing to unpack .../213-wise_2.4.1-24_arm64.deb ... Unpacking wise (2.4.1-24) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.7-2) ... Setting up liblmdb0:arm64 (0.9.31-1+b1) ... Setting up libgraphite2-3:arm64 (1.3.14-2) ... Setting up liblcms2-2:arm64 (2.14-2+b1) ... Setting up ncbi-data (6.1.20170106+dfsg2-2) ... Setting up libpixman-1-0:arm64 (0.42.2-1+b1) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1) ... Setting up libaom3:arm64 (3.8.2-2) ... Setting up mysql-common (5.8+1.1.0) ... update-alternatives: using /etc/mysql/my.cnf.fallback to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libxau6:arm64 (1:1.0.9-1+b1) ... Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5.2) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up probcons (1.12-14) ... Setting up libmbedcrypto7t64:arm64 (2.28.8-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up mafft (7.505-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up bwa (0.7.17-7+b3) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libijs-0.35:arm64 (0.35-15.1+b1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libgs-common (10.03.0~dfsg-1) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up libfontbox-java (1:1.8.16-5) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up phylip (1:3.697+dfsg-4) ... Setting up libpython3.12-minimal:arm64 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:arm64 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b1) ... Setting up libsvtav1enc1d1:arm64 (1.7.0+dfsg-2+b1) ... Setting up libcom-err2:arm64 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up emboss-data (6.6.0+dfsg-15) ... Setting up libjbig0:arm64 (2.1-6.1+b1) ... Setting up libnetpbm11t64:arm64 (2:11.06.01-2) ... Setting up librav1e0:arm64 (0.7.1-2) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... Setting up poppler-data (0.4.12-1) ... Setting up libkrb5support0:arm64 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 13 09:17:13 UTC 2025. Universal Time is now: Fri Jun 13 09:17:13 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up mariadb-common (1:10.11.7-4) ... update-alternatives: using /etc/mysql/mariadb.cnf to provide /etc/mysql/my.cnf (my.cnf) in auto mode Setting up libfontenc1:arm64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.2-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3) ... Setting up libzzip-0-13t64:arm64 (0.13.72+dfsg.1-1.2+b1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjbig2dec0:arm64 (0.20-1+b2) ... Setting up libteckit0:arm64 (2.5.12+ds1-1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:arm64 (0.8-13+b2) ... Setting up libdbus-1-3:arm64 (1.14.10-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.13-3+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:arm64 (2023.20230311.66589-9+b2) ... Setting up libimagequant0:arm64 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.43-5) ... Setting up libidn12:arm64 (1.42-2) ... Setting up libtcl8.6:arm64 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libmariadb3:arm64 (1:10.11.7-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up wise-data (2.4.1-24) ... Setting up libk5crypto3:arm64 (1.20.1-6+b1) ... Setting up libltdl7:arm64 (2.4.7-7+b1) ... Setting up libfftw3-double3:arm64 (3.3.10-1+b2) ... Setting up libcifpp-data (5.0.7.1-3) ... Setting up libkpathsea6:arm64 (2023.20230311.66589-9+b2) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:arm64 (14-20240429-1) ... Setting up libraw23t64:arm64 (0.21.2-2.1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.4.0-0.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up libdav1d7:arm64 (1.4.1-1) ... Setting up liblqr-1-0:arm64 (0.4.2-2.1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:arm64 (4.5.1+git230720-4) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up fasttree (2.1.11-2) ... Setting up netbase (6.4) ... Setting up libabsl20230802:arm64 (20230802.1-4) ... Setting up libkrb5-3:arm64 (1.20.1-6+b1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libde265-0:arm64 (1.0.15-1+b1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up libwebpmux3:arm64 (1.4.0-0.1) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libyuv0:arm64 (0.0~git202401110.af6ac82-1) ... Setting up dialign (2.2.1-12) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:arm64 (2023.20230311.66589-9+b2) ... Setting up prank (0.0.170427+dfsg-3) ... Setting up libargtable2-0 (13-2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpotrace0:arm64 (1.16-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libice6:arm64 (2:1.0.10-1+b1) ... Setting up libhpdf-2.3.0:arm64 (2.3.0+dfsg-1+b2) ... Setting up libxdmcp6:arm64 (1:1.1.2-3+b1) ... Setting up flex (2.6.4-8.2+b2) ... Setting up liblapack3:arm64 (3.12.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libmbedx509-1t64:arm64 (2.28.8-1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.17.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up wise (2.4.1-24) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:arm64 (0.8-13+b2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxcb-shm0:arm64 (1.17.0-1) ... Setting up clustalo (1.2.4-8) ... Setting up libldap-2.5-0:arm64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libcifpp5:arm64 (5.0.7.1-3+b1) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libptexenc1:arm64 (2023.20230311.66589-9+b2) ... Setting up libfreetype6:arm64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6+b1) ... Setting up libgav1-1:arm64 (0.19.0-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:arm64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libmbedtls14t64:arm64 (2.28.8-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:arm64 (1.1.35-1+b1) ... Setting up libx11-6:arm64 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:arm64 (8.3.0-2+b1) ... Setting up libfontconfig1:arm64 (2.15.0-1.1) ... Setting up libsm6:arm64 (2:1.2.3-1+b1) ... Setting up libavahi-client3:arm64 (0.8-13+b2) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ... Setting up libpaper1:arm64 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up libavif16:arm64 (1.0.4-3) ... Setting up libpython3.12-stdlib:arm64 (3.12.3-1) ... Setting up libxpm4:arm64 (1:3.5.17-1+b1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:arm64 (3.11.9-1) ... Setting up libpq5:arm64 (16.3-1) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up dssp (4.2.2-2) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.0-3+b1) ... Setting up libpython3.12t64:arm64 (3.12.3-1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython3.11-dev:arm64 (3.11.9-1) ... Setting up libraqm0:arm64 (0.10.1-1+b1) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... Setting up netpbm (2:11.06.01-2) ... Setting up libxss1:arm64 (1:1.2.3-1+b1) ... Setting up libcups2t64:arm64 (2.4.7-1.2+b1) ... Setting up libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:arm64 (2.3.6-1+b1) ... Setting up libxmu6:arm64 (2:1.1.3-3+b2) ... Setting up libpython3-dev:arm64 (3.11.8-1) ... Setting up libxi6:arm64 (2:1.8.1-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up preview-latex-style (13.2-1) ... Setting up libtk8.6:arm64 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.3-1) ... Setting up libxaw7:arm64 (2:1.0.14-1+b2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up ncbi-blast+ (2.12.0+ds-4+b1) ... Setting up python3-mysqldb (1.4.6-2+b2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-isodate (0.6.1-2) ... Setting up python3-pil:arm64 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libpython3-all-dev:arm64 (3.11.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up texlive-binaries (2023.20230311.66589-9+b2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up python3-lxml:arm64 (5.2.1-1) ... Setting up python3-rdflib (6.3.2-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-msgpack (1.0.3-3+b1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up libgs10-common (10.03.0~dfsg-1) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-cairo (1.26.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-tk:arm64 (3.12.3-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up python3-pil.imagetk:arm64 (10.3.0-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-dev (3.11.8-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up python3-reportlab (4.2.0-2) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up libgs10:arm64 (10.03.0~dfsg-1) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up python3-mmtf (1.1.3-1) ... Setting up ghostscript (10.03.0~dfsg-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up libheif-plugin-dav1d:arm64 (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:arm64 (1.17.6-1+b2) ... Setting up libheif1:arm64 (1.17.6-1+b2) ... Setting up libmagickcore-6.q16-7t64:arm64 (8:6.9.12.98+dfsg1-5.2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up libmagickwand-6.q16-7t64:arm64 (8:6.9.12.98+dfsg1-5.2) ... Setting up libgd3:arm64 (2.3.3-9+b3) ... Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5.2) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up emboss-lib (6.6.0+dfsg-15) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up emboss (6.6.0+dfsg-15) ... Setting up hevea (2.36-2+b1) ... Setting up imagemagick (8:6.9.12.98+dfsg1-5.2) ... Processing triggers for libc-bin (2.38-8) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-biopython-1.83+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-biopython_1.83+dfsg1-2_source.changes dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.83+dfsg1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_auto_clean pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux rm -rf _minted-Tutorial ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_auto_build pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/Seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/MaxEntropy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/analysis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Alphabet creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Application copying Bio/Application/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/PDBData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo copying Bio/Geo/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/xms.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/meme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/mast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/qcprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/cealign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/Loader.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/DBUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL copying BioSQL/BioSeq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio copying Bio/Align/_codonaligner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align copying Bio/Align/_pairwisealigner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/PDB/kdtrees.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO copying BioSQL/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL running build_ext building 'Bio.Align._codonaligner' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/Bio creating build/temp.linux-aarch64-cpython-312/Bio/Align aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/Align/_codonaligner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/Align/_codonaligner.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_global_align_compare': Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6319:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6319 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6308:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6308 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_watermansmithbeyer_local_align_compare': Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6367:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6367 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6356:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6356 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_global_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6874:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6341:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6341 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6330:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6330 | WATERMANSMITHBEYER_ENTER_ALIGN(Global); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5737:16: warning: 'Iy_row' may be used uninitialized [-Wmaybe-uninitialized] 5737 | if (Iy_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5406:14: note: 'Iy_row' was declared here 5406 | double** Iy_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'Aligner_watermansmithbeyer_local_align_matrix', inlined from 'Aligner_align' at Bio/Align/_pairwisealigner.c:6880:34: Bio/Align/_pairwisealigner.c:5735:12: warning: 'Ix_row' may be used uninitialized [-Wmaybe-uninitialized] 5735 | if (Ix_row) { \ | ^ Bio/Align/_pairwisealigner.c:6392:5: note: in expansion of macro 'WATERMANSMITHBEYER_EXIT_ALIGN' 6392 | WATERMANSMITHBEYER_EXIT_ALIGN; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Bio/Align/_pairwisealigner.c: In function 'Aligner_align': Bio/Align/_pairwisealigner.c:5405:14: note: 'Ix_row' was declared here 5405 | double** Ix_row; \ | ^~~~~~ Bio/Align/_pairwisealigner.c:6381:5: note: in expansion of macro 'WATERMANSMITHBEYER_ENTER_ALIGN' 6381 | WATERMANSMITHBEYER_ENTER_ALIGN(Local); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/Align/_pairwisealigner.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.12/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.12/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/cpairwise2module.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-aarch64-cpython-312/Bio/Nexus aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/Nexus/cnexus.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-aarch64-cpython-312/Bio/motifs aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/motifs/_pwm.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-aarch64-cpython-312/Bio/Cluster aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-312/Bio/Cluster/clustermodule.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so building 'Bio.PDB.kdtrees' extension creating build/temp.linux-aarch64-cpython-312/Bio/PDB aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/PDB/kdtrees.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so building 'Bio.PDB.ccealign' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/PDB/ccealignmodule.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-aarch64-cpython-312/Bio/SeqIO aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/Bio/SeqIO/_twoBitIO.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/Seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/MaxEntropy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/analysis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Alphabet creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Application copying Bio/Application/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/PDBData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/xms.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/meme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/mast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/PDB/vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/qcprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/cealign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/Loader.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/DBUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio copying Bio/Align/_codonaligner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/_pairwisealigner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/epost.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary_gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/kdtrees.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO copying BioSQL/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL running build_ext building 'Bio.Align._codonaligner' extension creating build/temp.linux-aarch64-cpython-311 creating build/temp.linux-aarch64-cpython-311/Bio creating build/temp.linux-aarch64-cpython-311/Bio/Align aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Align/_codonaligner.c -o build/temp.linux-aarch64-cpython-311/Bio/Align/_codonaligner.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/Align/_codonaligner.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so building 'Bio.Align._pairwisealigner' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Align/_pairwisealigner.c -o build/temp.linux-aarch64-cpython-311/Bio/Align/_pairwisealigner.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/Align/_pairwisealigner.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so building 'Bio.cpairwise2' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-aarch64-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/cpairwise2module.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-aarch64-cpython-311/Bio/Nexus aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-aarch64-cpython-311/Bio/Nexus/cnexus.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so building 'Bio.motifs._pwm' extension creating build/temp.linux-aarch64-cpython-311/Bio/motifs aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-aarch64-cpython-311/Bio/motifs/_pwm.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/motifs/_pwm.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-aarch64-cpython-311/Bio/Cluster aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-aarch64-cpython-311/Bio/Cluster/cluster.o aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-aarch64-cpython-311/Bio/Cluster/clustermodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/Cluster/cluster.o build/temp.linux-aarch64-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so building 'Bio.PDB.kdtrees' extension creating build/temp.linux-aarch64-cpython-311/Bio/PDB aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-aarch64-cpython-311/Bio/PDB/kdtrees.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so building 'Bio.PDB.ccealign' extension aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-aarch64-cpython-311/Bio/PDB/ccealignmodule.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-aarch64-cpython-311/Bio/SeqIO aarch64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-aarch64-cpython-311/Bio/SeqIO/_twoBitIO.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-biopython-1.83+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so cd Doc && make make[2]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1/Doc' sed "s/\@VERSION\@/1.83/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:8: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:89: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:93: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:94: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:183: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:189: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:157: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:353: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seq_objects.tex:475: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:598: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:33: Warning: Undefined label: 'sec:FASTQ-filtering-example' ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:132: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:275: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:292: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:600: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined label: 'sec:locations' ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_seq_annot.tex:793: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_annot.tex:805: Warning: Undefined label: 'sec:FASTQ-slicing-off-primer' ./Tutorial/chapter_seq_annot.tex:806: Warning: Undefined label: 'sec:FASTQ-slicing-off-adaptor' ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seqio.tex:4: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:12: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:12: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seqio.tex:14: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_seqio.tex:22: Warning: Undefined label: 'sec:SeqIO_Online' ./Tutorial/chapter_seqio.tex:22: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:43: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_seqio.tex:68: Warning: Undefined label: 'sec:sequence-parsing-plus-pylab' ./Tutorial/chapter_seqio.tex:150: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:306: Warning: Undefined label: 'sec:writing-sequence-files' ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:329: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_seqio.tex:398: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:414: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_seqio.tex:504: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:509: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_seqio.tex:539: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:566: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:572: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:576: Warning: Undefined label: 'sec:SeqIO-index-db' ./Tutorial/chapter_seqio.tex:579: Warning: Undefined label: 'sec:SeqIO-indexing-discussion' ./Tutorial/chapter_seqio.tex:582: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:589: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_seqio.tex:662: Warning: Undefined label: 'sec:fasta-parsing' ./Tutorial/chapter_seqio.tex:784: Warning: Undefined label: 'sec:fastq-indexing' ./Tutorial/chapter_seqio.tex:805: Warning: Undefined label: 'sec:seqio-todict-functionkey' ./Tutorial/chapter_seqio.tex:867: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_seqio.tex:949: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1190: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_seqio.tex:1233: Warning: Undefined label: 'sec:SeqIO-fastq-conversion' ./Tutorial/chapter_seqio.tex:1233: Warning: Undefined label: 'sec:SeqIO-fasta-qual-conversion' ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined label: 'sec:seq-reverse-complement' ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_seqio.tex:1312: Warning: Undefined label: 'sec:SeqIO-translate' ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seqio.tex:1413: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_align.tex:6: Warning: Undefined label: 'sec:alignmentobject' ./Tutorial/chapter_align.tex:6: Warning: Undefined label: 'sec:alignmentparsers' ./Tutorial/chapter_align.tex:6: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_align.tex:8: Warning: Undefined label: 'chapter:msa' ./Tutorial/chapter_align.tex:13: Warning: Undefined label: 'sec:alignmentparsers' ./Tutorial/chapter_align.tex:13: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:77: Warning: Undefined label: 'sec:alignmentparsers' ./Tutorial/chapter_align.tex:115: Warning: Undefined label: 'subsec:align_sequences_coordinates' ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:149: Warning: Undefined label: 'sec:generalized-pairwise' ./Tutorial/chapter_align.tex:153: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_align.tex:155: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_align.tex:626: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_align.tex:711: Warning: Undefined label: 'subsec:align_chain' ./Tutorial/chapter_align.tex:874: Warning: Undefined label: 'sec:SeqIO_directionaries' ./Tutorial/chapter_align.tex:905: Warning: Undefined label: 'sec:msa_codons' ./Tutorial/chapter_align.tex:912: Warning: Undefined label: 'subsec:align_reading' ./Tutorial/chapter_align.tex:912: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_align.tex:973: Warning: Undefined label: 'sec:Bio.SeqIO-input' ./Tutorial/chapter_align.tex:973: Warning: Undefined label: 'sec:alignformats' ./Tutorial/chapter_align.tex:976: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:980: Warning: Undefined label: 'sec:alignformats' ./Tutorial/chapter_align.tex:983: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:991: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:1002: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1017: Warning: Undefined label: 'sec:alignformats' ./Tutorial/chapter_align.tex:1049: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:1081: Warning: Undefined label: 'subsec:align_a2m' ./Tutorial/chapter_align.tex:1082: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:1083: Warning: Undefined label: 'subsec:align_bigbed' ./Tutorial/chapter_align.tex:1084: Warning: Undefined label: 'subsec:align_bigmaf' ./Tutorial/chapter_align.tex:1085: Warning: Undefined label: 'subsec:align_bigpsl' ./Tutorial/chapter_align.tex:1086: Warning: Undefined label: 'subsec:align_chain' ./Tutorial/chapter_align.tex:1087: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_align.tex:1088: Warning: Undefined label: 'subsec:align_emboss' ./Tutorial/chapter_align.tex:1089: Warning: Undefined label: 'subsec:align_exonerate' ./Tutorial/chapter_align.tex:1090: Warning: Undefined label: 'subsec:align_fasta' ./Tutorial/chapter_align.tex:1091: Warning: Undefined label: 'subsec:align_hhr' ./Tutorial/chapter_align.tex:1092: Warning: Undefined label: 'subsec:align_maf' ./Tutorial/chapter_align.tex:1093: Warning: Undefined label: 'subsec:align_mauve' ./Tutorial/chapter_align.tex:1094: Warning: Undefined label: 'subsec:align_msf' ./Tutorial/chapter_align.tex:1095: Warning: Undefined label: 'subsec:align_nexus' ./Tutorial/chapter_align.tex:1096: Warning: Undefined label: 'subsec:align_phylip' ./Tutorial/chapter_align.tex:1097: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:1098: Warning: Undefined label: 'subsec:align_sam' ./Tutorial/chapter_align.tex:1099: Warning: Undefined label: 'subsec:align_stockholm' ./Tutorial/chapter_align.tex:1100: Warning: Undefined label: 'subsec:align_tabular' ./Tutorial/chapter_align.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1108: Warning: Undefined label: 'subsec:align_tabular' ./Tutorial/chapter_align.tex:1165: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_align.tex:1229: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1314: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:1317: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1390: Warning: Undefined label: 'subsec:align_printing' ./Tutorial/chapter_align.tex:1438: Warning: Undefined label: 'subsec:align_fasta' ./Tutorial/chapter_align.tex:1450: Warning: Undefined label: 'subsec:align_phylip' ./Tutorial/chapter_align.tex:1499: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1634: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1636: Warning: Undefined citation: 'rice2000' ./Tutorial/chapter_align.tex:1744: Warning: Undefined label: 'subsec:align_phylip' ./Tutorial/chapter_align.tex:1764: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1876: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1878: Warning: Undefined citation: 'slater2005' ./Tutorial/chapter_align.tex:1960: Warning: Undefined label: 'subsec:align_sam' ./Tutorial/chapter_align.tex:2013: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2015: Warning: Undefined citation: 'maddison1997' ./Tutorial/chapter_align.tex:2043: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:2092: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2094: Warning: Undefined citation: 'pearson1988' ./Tutorial/chapter_align.tex:2094: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:2188: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2190: Warning: Undefined citation: 'steinegger2019' ./Tutorial/chapter_align.tex:2366: Warning: Undefined label: 'sec:partial-seq' ./Tutorial/chapter_align.tex:2409: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2412: Warning: Undefined citation: 'krogh1994' ./Tutorial/chapter_align.tex:2412: Warning: Undefined citation: 'hughey1996' ./Tutorial/chapter_align.tex:2412: Warning: Undefined label: 'subsec:align_fasta' ./Tutorial/chapter_align.tex:2415: Warning: Undefined label: 'subsec:align_fasta' ./Tutorial/chapter_align.tex:2476: Warning: Undefined label: 'subsec:align_writing' ./Tutorial/chapter_align.tex:2479: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2481: Warning: Undefined citation: 'darling2004' ./Tutorial/chapter_align.tex:2726: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:2772: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2774: Warning: Undefined citation: 'li2009' ./Tutorial/chapter_align.tex:2821: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:2829: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:2942: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:2996: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3082: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3084: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:3119: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:3152: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_align.tex:3154: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:3235: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3237: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:3237: Warning: Undefined label: 'subsec:align_bed' ./Tutorial/chapter_align.tex:3348: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3352: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:3354: Warning: Undefined label: 'subsec:align_bigbed' ./Tutorial/chapter_align.tex:3354: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:3410: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:3468: Warning: Undefined label: 'subsec:align_psl' ./Tutorial/chapter_align.tex:3472: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3654: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:3657: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3659: Warning: Undefined label: 'subsec:align_bigmaf' ./Tutorial/chapter_align.tex:3662: Warning: Undefined label: 'subsec:align_maf' ./Tutorial/chapter_align.tex:3726: Warning: Undefined label: 'subsec:align_maf' ./Tutorial/chapter_align.tex:3775: Warning: Undefined label: 'sec:alignments' ./Tutorial/chapter_align.tex:3798: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:10: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_pairwise.tex:23: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_pairwise.tex:266: Warning: Undefined citation: 'waterman1987' ./Tutorial/chapter_pairwise.tex:298: Warning: Undefined label: 'sec:pairwise-substitution-scores' ./Tutorial/chapter_pairwise.tex:298: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_pairwise.tex:298: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined label: 'sec:pairwise-basic' ./Tutorial/chapter_pairwise.tex:302: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_pairwise.tex:303: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_pairwise.tex:462: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_pairwise.tex:781: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:783: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_pairwise.tex:1063: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1083: Warning: Undefined label: 'subsec:align_clustal' ./Tutorial/chapter_pairwise.tex:1194: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_pairwise.tex:1248: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_pairwise.tex:1345: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_pairwise.tex:1345: Warning: Suppressing nested a element ./Tutorial/chapter_pairwise.tex:1493: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_pairwise.tex:1493: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_pairwise.tex:1700: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined label: 'sec:pairwise-aligner' ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined label: 'table:align-meta-attributes' ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined label: 'table:codonalign-meta-attributes' ./Tutorial/chapter_pairwise.tex:1847: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined citation: 'nei1986' ./Tutorial/chapter_pairwise.tex:1912: Warning: Undefined citation: 'li1985' ./Tutorial/chapter_pairwise.tex:1913: Warning: Undefined citation: 'yang2000' ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined citation: 'goldman1994' ./Tutorial/chapter_msa.tex:33: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_msa.tex:37: Warning: Undefined label: 'sec:AlignIO-count-argument' ./Tutorial/chapter_msa.tex:115: Warning: Undefined label: 'sec:alignment-format' ./Tutorial/chapter_msa.tex:446: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_msa.tex:635: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_msa.tex:815: Warning: Undefined label: 'sec:SeqRecord-addition' ./Tutorial/chapter_msa.tex:892: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_msa.tex:909: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:913: Warning: Undefined label: 'chapter:msa' ./Tutorial/chapter_msa.tex:924: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_msa.tex:925: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_msa.tex:926: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_msa.tex:927: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_msa.tex:933: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_msa.tex:953: Warning: Undefined label: 'sec:alignmentobject' ./Tutorial/chapter_msa.tex:953: Warning: Undefined label: 'sec:alignment_newstyle' ./Tutorial/chapter_msa.tex:958: Warning: Undefined label: 'sec:motif_object' ./Tutorial/chapter_msa.tex:970: Warning: Undefined label: 'sec:motif_consensus' ./Tutorial/chapter_msa.tex:1046: Warning: Undefined label: 'sec:alignmentobject' ./Tutorial/chapter_msa.tex:1046: Warning: Undefined label: 'sec:alignment_newstyle' ./Tutorial/chapter_msa.tex:1051: Warning: Undefined label: 'sec:motif_object' ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1101: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_msa.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1154: Warning: Undefined label: 'sec:alignmentobject' ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1193: Warning: Undefined label: 'sec:alignio_clustal' ./Tutorial/chapter_msa.tex:1298: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_msa.tex:1302: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_msa.tex:1311: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1421: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_pairwise2.tex:4: Warning: Undefined label: 'chapter:pairwise' ./Tutorial/chapter_blast.tex:18: Warning: Undefined label: 'chapter:searchio' ./Tutorial/chapter_blast.tex:71: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:131: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:136: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:158: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:167: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:176: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:204: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:239: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:285: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:287: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:302: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:338: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:338: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_searchio.tex:739: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_searchio.tex:1089: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_entrez.tex:21: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:60: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:63: Warning: Undefined label: 'sec:BioSQL' ./Tutorial/chapter_entrez.tex:216: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:220: Warning: Undefined label: 'sec:entrez-einfo' ./Tutorial/chapter_entrez.tex:236: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:299: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:325: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:325: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:419: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:479: Warning: Undefined label: 'sec:entrez-specialized-parsers' ./Tutorial/chapter_entrez.tex:481: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:563: Warning: Undefined label: 'sec:elink-citations' ./Tutorial/chapter_entrez.tex:569: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:823: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:823: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_entrez.tex:945: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1108: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1111: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1115: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1158: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1204: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_entrez.tex:1259: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1294: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined label: 'sec:SeqIO_GenBank_Online' ./Tutorial/chapter_entrez.tex:1302: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1378: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1379: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1439: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined label: 'sec:entrez_example_genbank' ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined label: 'sec:entrez-and-medline' ./Tutorial/chapter_entrez.tex:1555: Warning: Undefined label: 'sec:elink' ./Tutorial/chapter_entrez.tex:1580: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:38: Warning: Undefined label: 'sec:expasy_swissprot' ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined label: 'sec:SeqIO_ExPASy_and_SwissProt' ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: Undefined label: 'sec:orchids' ./Tutorial/chapter_pdb.tex:84: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:275: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:284: Warning: Undefined label: 'sec:problem_structures' ./Tutorial/chapter_pdb.tex:421: Warning: Undefined label: 'sec:hetero_problems' ./Tutorial/chapter_pdb.tex:466: Warning: Undefined label: 'sec:point_mutations' ./Tutorial/chapter_pdb.tex:483: Warning: Undefined label: 'sec:disordered_atoms' ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:610: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:657: Warning: Undefined label: 'fig:smcra' ./Tutorial/chapter_pdb.tex:683: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:924: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1262: Warning: Undefined label: 'fig:distanceplot' ./Tutorial/chapter_pdb.tex:1384: Warning: Undefined label: 'fig:phepairs' ./Tutorial/chapter_pdb.tex:1456: Warning: Undefined label: 'table:ic-attribs' ./Tutorial/chapter_pdb.tex:1497: Warning: Undefined citation: 'golub1989' ./Tutorial/chapter_pdb.tex:1525: Warning: Undefined citation: 'hamelryck2005' ./Tutorial/chapter_pdb.tex:1560: Warning: Undefined label: 'table:DSSP-codes' ./Tutorial/chapter_pdb.tex:1600: Warning: Undefined label: 'sec:residue_depth' ./Tutorial/chapter_pdb.tex:1603: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1651: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_pdb.tex:1665: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1862: Warning: Undefined citation: 'hamelryck2003b' ./Tutorial/chapter_pdb.tex:1863: Warning: Undefined citation: 'majumdar2005' ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:825: Warning: Undefined label: 'sec:PhyloXML' ./Tutorial/chapter_motifs.tex:8: Warning: Undefined label: 'sec:links' ./Tutorial/chapter_motifs.tex:24: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:41: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:142: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:171: Warning: Undefined citation: 'cornish1985' ./Tutorial/chapter_motifs.tex:172: Warning: Undefined citation: 'cavener1987' ./Tutorial/chapter_motifs.tex:232: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:234: Warning: Undefined citation: 'schneider1986' ./Tutorial/chapter_motifs.tex:234: Warning: Undefined citation: 'durbin1998' ./Tutorial/chapter_motifs.tex:631: Warning: Undefined citation: 'bailey1994' ./Tutorial/chapter_motifs.tex:777: Warning: Undefined citation: 'matys2003' ./Tutorial/chapter_motifs.tex:861: Warning: Undefined label: 'table:transfaccodes' ./Tutorial/chapter_motifs.tex:1192: Warning: Undefined label: 'subsec:relative_entropy' ./Tutorial/chapter_cluster.tex:6: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'lecuyer1988' ./Tutorial/chapter_cluster.tex:30: Warning: Undefined citation: 'kachitvichyanukul1988' ./Tutorial/chapter_cluster.tex:154: Warning: Undefined citation: 'snedecor1989' ./Tutorial/chapter_cluster.tex:183: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:278: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:346: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:413: Warning: Undefined citation: 'sibson1973' ./Tutorial/chapter_cluster.tex:556: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:600: Warning: Undefined citation: 'kohonen1997' ./Tutorial/chapter_cluster.tex:600: Warning: Undefined citation: 'tamayo1999' ./Tutorial/chapter_cluster.tex:647: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:660: Warning: Undefined citation: 'yeung2001' ./Tutorial/chapter_cluster.tex:668: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:690: Warning: Undefined citation: 'eisen1998' ./Tutorial/chapter_cluster.tex:690: Warning: Undefined citation: 'saldanha2004' ./Tutorial/chapter_cluster.tex:802: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:805: Warning: Undefined label: 'sec:distancematrix' ./Tutorial/chapter_cluster.tex:823: Warning: Undefined label: 'sec:clustercentroids' ./Tutorial/chapter_cluster.tex:846: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:871: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:900: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:922: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:954: Warning: Undefined citation: 'hihara2001' ./Tutorial/chapter_graphics.tex:18: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_graphics.tex:28: Warning: Undefined citation: 'toth2006' ./Tutorial/chapter_graphics.tex:31: Warning: Undefined citation: 'vanderauwera2009' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_graphics.tex:36: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:64: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:220: Warning: Undefined label: 'sec:seq_features' ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:344: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_graphics.tex:351: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:488: Warning: Undefined label: 'sec:gd_top_down' ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:596: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:235: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:338: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:443: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:643: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:646: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:801: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:823: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1024: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1426: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:75: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:91: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:539: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:582: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:976: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:983: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1002: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1229: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1317: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1499: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1634: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1764: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1876: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2013: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2092: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2188: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2409: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2479: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2772: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2996: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3082: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3235: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3348: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3472: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3657: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3798: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:781: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1345: Warning: Suppressing nested a element ./Tutorial/chapter_pairwise.tex:1700: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1847: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:909: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1311: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1108: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1111: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:683: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:924: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1603: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1665: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:24: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:41: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:142: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:232: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:351: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:235: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:296: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:120: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:139: Warning: line too long ./Tutorial/chapter_seq_annot.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:197: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:218: Warning: line too long ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:508: Warning: line too long ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:647: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:647: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:668: Warning: line too long ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: line too long ./Tutorial/chapter_seq_annot.tex:704: Warning: line too long ./Tutorial/chapter_seq_annot.tex:704: Warning: line too long ./Tutorial/chapter_seq_annot.tex:708: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:708: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:715: Warning: line too long ./Tutorial/chapter_seq_annot.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:725: Warning: line too long ./Tutorial/chapter_seq_annot.tex:746: Warning: line too long ./Tutorial/chapter_seq_annot.tex:746: Warning: line too long ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:880: Warning: line too long ./Tutorial/chapter_seq_annot.tex:897: Warning: line too long ./Tutorial/chapter_seq_annot.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:248: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:539: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:551: Warning: line too long ./Tutorial/chapter_seqio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:582: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:699: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:699: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:851: Warning: line too long ./Tutorial/chapter_seqio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1068: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1068: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:686: Warning: line too long ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:976: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:983: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1002: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1017: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1017: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1087: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1087: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1095: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1095: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1097: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1097: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1099: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1099: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1101: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1113: Warning: line too long ./Tutorial/chapter_align.tex:1115: Warning: line too long ./Tutorial/chapter_align.tex:1117: Warning: line too long ./Tutorial/chapter_align.tex:1119: Warning: line too long ./Tutorial/chapter_align.tex:1121: Warning: line too long ./Tutorial/chapter_align.tex:1154: Warning: line too long ./Tutorial/chapter_align.tex:1156: Warning: line too long ./Tutorial/chapter_align.tex:1158: Warning: line too long ./Tutorial/chapter_align.tex:1160: Warning: line too long ./Tutorial/chapter_align.tex:1162: Warning: line too long ./Tutorial/chapter_align.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1215: Warning: line too long ./Tutorial/chapter_align.tex:1217: Warning: line too long ./Tutorial/chapter_align.tex:1219: Warning: line too long ./Tutorial/chapter_align.tex:1221: Warning: line too long ./Tutorial/chapter_align.tex:1223: Warning: line too long ./Tutorial/chapter_align.tex:1226: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1226: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1229: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1317: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1499: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1634: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1718: Warning: line too long ./Tutorial/chapter_align.tex:1720: Warning: line too long ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1749: Warning: line too long ./Tutorial/chapter_align.tex:1750: Warning: line too long ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1757: Warning: line too long ./Tutorial/chapter_align.tex:1759: Warning: line too long ./Tutorial/chapter_align.tex:1764: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1857: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1857: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1876: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2013: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2092: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2188: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2214: Warning: line too long ./Tutorial/chapter_align.tex:2215: Warning: line too long ./Tutorial/chapter_align.tex:2216: Warning: line too long ./Tutorial/chapter_align.tex:2217: Warning: line too long ./Tutorial/chapter_align.tex:2218: Warning: line too long ./Tutorial/chapter_align.tex:2219: Warning: line too long ./Tutorial/chapter_align.tex:2220: Warning: line too long ./Tutorial/chapter_align.tex:2221: Warning: line too long ./Tutorial/chapter_align.tex:2224: Warning: line too long ./Tutorial/chapter_align.tex:2225: Warning: line too long ./Tutorial/chapter_align.tex:2226: Warning: line too long ./Tutorial/chapter_align.tex:2227: Warning: line too long ./Tutorial/chapter_align.tex:2228: Warning: line too long ./Tutorial/chapter_align.tex:2229: Warning: line too long ./Tutorial/chapter_align.tex:2230: Warning: line too long ./Tutorial/chapter_align.tex:2231: Warning: line too long ./Tutorial/chapter_align.tex:2252: Warning: line too long ./Tutorial/chapter_align.tex:2253: Warning: line too long ./Tutorial/chapter_align.tex:2255: Warning: line too long ./Tutorial/chapter_align.tex:2256: Warning: line too long ./Tutorial/chapter_align.tex:2257: Warning: line too long ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: line too long ./Tutorial/chapter_align.tex:2379: Warning: line too long ./Tutorial/chapter_align.tex:2380: Warning: line too long ./Tutorial/chapter_align.tex:2380: Warning: line too long ./Tutorial/chapter_align.tex:2381: Warning: line too long ./Tutorial/chapter_align.tex:2381: Warning: line too long ./Tutorial/chapter_align.tex:2387: Warning: line too long ./Tutorial/chapter_align.tex:2387: Warning: line too long ./Tutorial/chapter_align.tex:2389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2404: Warning: line too long ./Tutorial/chapter_align.tex:2404: Warning: line too long ./Tutorial/chapter_align.tex:2405: Warning: line too long ./Tutorial/chapter_align.tex:2405: Warning: line too long ./Tutorial/chapter_align.tex:2409: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: line too long ./Tutorial/chapter_align.tex:2421: Warning: line too long ./Tutorial/chapter_align.tex:2424: Warning: line too long ./Tutorial/chapter_align.tex:2427: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: line too long ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2458: Warning: line too long ./Tutorial/chapter_align.tex:2460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: line too long ./Tutorial/chapter_align.tex:2467: Warning: line too long ./Tutorial/chapter_align.tex:2469: Warning: line too long ./Tutorial/chapter_align.tex:2471: Warning: line too long ./Tutorial/chapter_align.tex:2473: Warning: line too long ./Tutorial/chapter_align.tex:2476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2772: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2825: Warning: line too long ./Tutorial/chapter_align.tex:2825: Warning: line too long ./Tutorial/chapter_align.tex:2845: Warning: line too long ./Tutorial/chapter_align.tex:2848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2880: Warning: line too long ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2895: Warning: line too long ./Tutorial/chapter_align.tex:2895: Warning: line too long ./Tutorial/chapter_align.tex:2897: Warning: line too long ./Tutorial/chapter_align.tex:2897: Warning: line too long ./Tutorial/chapter_align.tex:2899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2930: Warning: line too long ./Tutorial/chapter_align.tex:2930: Warning: line too long ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2996: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3047: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3047: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3082: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3235: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3244: Warning: line too long ./Tutorial/chapter_align.tex:3244: Warning: line too long ./Tutorial/chapter_align.tex:3258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3348: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3472: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3657: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3798: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:222: Warning: line too long ./Tutorial/chapter_pairwise.tex:238: Warning: line too long ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:508: Warning: overfull line in array : array too wide ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:781: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1700: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1740: Warning: overfull line in array : array too wide ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1748: Warning: line too long ./Tutorial/chapter_pairwise.tex:1750: Warning: line too long ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1789: Warning: line too long ./Tutorial/chapter_pairwise.tex:1804: Warning: line too long ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1847: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1: Warning: line too long ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:909: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1311: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:61: Warning: line too long ./Tutorial/chapter_pairwise2.tex:63: Warning: line too long ./Tutorial/chapter_pairwise2.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:43: Warning: line too long ./Tutorial/chapter_blast.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:66: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:66: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:200: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:200: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:367: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:367: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:438: Warning: line too long ./Tutorial/chapter_blast.tex:440: Warning: line too long ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:457: Warning: Image in text ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:733: Warning: line too long ./Tutorial/chapter_searchio.tex:735: Warning: line too long ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:850: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:850: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:853: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:853: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:922: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:922: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:966: Warning: line too long ./Tutorial/chapter_searchio.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1014: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1014: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1032: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1032: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1140: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1140: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:992: Warning: line too long ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1108: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1111: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:32: Warning: line too long ./Tutorial/chapter_uniprot.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:488: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:288: Warning: Image in text ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:683: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:924: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1276: Warning: Image in text ./Tutorial/chapter_pdb.tex:1295: Warning: line too long ./Tutorial/chapter_pdb.tex:1389: Warning: Image in text ./Tutorial/chapter_pdb.tex:1474: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1603: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1665: Warning: '_' occurring outside math mode ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:107: Warning: Image in text ./Tutorial/chapter_phylo.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:184: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:184: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:209: Warning: Image in text ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: line too long ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:404: Warning: Image in text ./Tutorial/chapter_phylo.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:537: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:537: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:24: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:41: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:142: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:232: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:255: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:255: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:639: Warning: line too long ./Tutorial/chapter_motifs.tex:641: Warning: line too long ./Tutorial/chapter_motifs.tex:647: Warning: line too long ./Tutorial/chapter_motifs.tex:649: Warning: line too long ./Tutorial/chapter_motifs.tex:658: Warning: line too long ./Tutorial/chapter_motifs.tex:662: Warning: line too long ./Tutorial/chapter_motifs.tex:664: Warning: line too long ./Tutorial/chapter_motifs.tex:673: Warning: line too long ./Tutorial/chapter_motifs.tex:675: Warning: line too long ./Tutorial/chapter_motifs.tex:676: Warning: line too long ./Tutorial/chapter_motifs.tex:678: Warning: line too long ./Tutorial/chapter_motifs.tex:684: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:684: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:869: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:869: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:877: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:877: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:902: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:902: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1650: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1651: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1651: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1652: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:288: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:288: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:513: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:513: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:521: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:521: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:527: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:527: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:607: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:611: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:616: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:711: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:749: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:842: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:842: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:351: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:235: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: line too long ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:561: Warning: line too long ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:694: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:694: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:804: Warning: line too long ./Tutorial/chapter_cookbook.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1053: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1056: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1056: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1094: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1094: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1127: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1163: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1163: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1211: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1265: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1265: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1341: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1341: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1341: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1364: Warning: line too long ./Tutorial/chapter_cookbook.tex:1365: Warning: line too long ./Tutorial/chapter_cookbook.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1413: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1421: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:70: Warning: '_' occurring outside math mode ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:128: Warning: line too long ./Tutorial.tex:181: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:193: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:193: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:203: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:226: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:226: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:238: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:238: Warning: Application of '\'' on 'o' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:94: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:188: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:214: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:84: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:118: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:210: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:296: Warning: Command not found: \downarrow ./Tutorial/chapter_seq_objects.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:676: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:728: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:732: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:742: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:830: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:99: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:120: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:139: Warning: line too long ./Tutorial/chapter_seq_annot.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:197: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:218: Warning: line too long ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:293: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:327: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:383: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:508: Warning: line too long ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:604: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:647: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:647: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:648: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:649: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:668: Warning: line too long ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: line too long ./Tutorial/chapter_seq_annot.tex:704: Warning: line too long ./Tutorial/chapter_seq_annot.tex:704: Warning: line too long ./Tutorial/chapter_seq_annot.tex:708: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:708: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:715: Warning: line too long ./Tutorial/chapter_seq_annot.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:725: Warning: line too long ./Tutorial/chapter_seq_annot.tex:746: Warning: line too long ./Tutorial/chapter_seq_annot.tex:746: Warning: line too long ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:880: Warning: line too long ./Tutorial/chapter_seq_annot.tex:897: Warning: line too long ./Tutorial/chapter_seq_annot.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:939: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:1: Warning: line too long ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:43: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:93: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:248: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:291: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:539: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:551: Warning: line too long ./Tutorial/chapter_seqio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:567: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:568: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:573: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:582: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:585: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:603: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:606: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:641: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:664: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:699: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:699: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:805: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:851: Warning: line too long ./Tutorial/chapter_seqio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:935: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:977: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1037: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1039: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1040: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1068: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1068: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1156: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1158: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1199: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:1219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1317: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1343: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1364: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:1395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:1: Warning: line too long ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:75: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:92: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:135: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:137: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:143: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:148: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:151: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:153: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:224: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:292: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:374: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:520: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:522: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:686: Warning: line too long ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:688: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:905: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:976: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:978: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:980: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:983: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:991: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1002: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1017: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1017: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1075: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1080: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1081: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1082: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1087: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1087: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1092: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1095: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1095: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1097: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1097: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1099: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1099: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1101: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1106: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1108: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1113: Warning: line too long ./Tutorial/chapter_align.tex:1115: Warning: line too long ./Tutorial/chapter_align.tex:1117: Warning: line too long ./Tutorial/chapter_align.tex:1119: Warning: line too long ./Tutorial/chapter_align.tex:1121: Warning: line too long ./Tutorial/chapter_align.tex:1154: Warning: line too long ./Tutorial/chapter_align.tex:1156: Warning: line too long ./Tutorial/chapter_align.tex:1158: Warning: line too long ./Tutorial/chapter_align.tex:1160: Warning: line too long ./Tutorial/chapter_align.tex:1162: Warning: line too long ./Tutorial/chapter_align.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1194: Warning: line too long ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1196: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1206: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1215: Warning: line too long ./Tutorial/chapter_align.tex:1217: Warning: line too long ./Tutorial/chapter_align.tex:1219: Warning: line too long ./Tutorial/chapter_align.tex:1221: Warning: line too long ./Tutorial/chapter_align.tex:1223: Warning: line too long ./Tutorial/chapter_align.tex:1226: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1226: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1229: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1289: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1317: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1499: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1605: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1610: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1611: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1612: Warning: line too long ./Tutorial/chapter_align.tex:1634: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1718: Warning: line too long ./Tutorial/chapter_align.tex:1720: Warning: line too long ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1724: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1749: Warning: line too long ./Tutorial/chapter_align.tex:1750: Warning: line too long ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1753: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1757: Warning: line too long ./Tutorial/chapter_align.tex:1759: Warning: line too long ./Tutorial/chapter_align.tex:1764: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1857: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1857: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1876: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:1878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1948: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1960: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2013: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2092: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2096: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2175: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2188: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2190: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2214: Warning: line too long ./Tutorial/chapter_align.tex:2215: Warning: line too long ./Tutorial/chapter_align.tex:2216: Warning: line too long ./Tutorial/chapter_align.tex:2217: Warning: line too long ./Tutorial/chapter_align.tex:2218: Warning: line too long ./Tutorial/chapter_align.tex:2219: Warning: line too long ./Tutorial/chapter_align.tex:2220: Warning: line too long ./Tutorial/chapter_align.tex:2221: Warning: line too long ./Tutorial/chapter_align.tex:2224: Warning: line too long ./Tutorial/chapter_align.tex:2225: Warning: line too long ./Tutorial/chapter_align.tex:2226: Warning: line too long ./Tutorial/chapter_align.tex:2227: Warning: line too long ./Tutorial/chapter_align.tex:2228: Warning: line too long ./Tutorial/chapter_align.tex:2229: Warning: line too long ./Tutorial/chapter_align.tex:2230: Warning: line too long ./Tutorial/chapter_align.tex:2231: Warning: line too long ./Tutorial/chapter_align.tex:2252: Warning: line too long ./Tutorial/chapter_align.tex:2253: Warning: line too long ./Tutorial/chapter_align.tex:2255: Warning: line too long ./Tutorial/chapter_align.tex:2256: Warning: line too long ./Tutorial/chapter_align.tex:2257: Warning: line too long ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2375: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: line too long ./Tutorial/chapter_align.tex:2379: Warning: line too long ./Tutorial/chapter_align.tex:2380: Warning: line too long ./Tutorial/chapter_align.tex:2380: Warning: line too long ./Tutorial/chapter_align.tex:2381: Warning: line too long ./Tutorial/chapter_align.tex:2381: Warning: line too long ./Tutorial/chapter_align.tex:2387: Warning: line too long ./Tutorial/chapter_align.tex:2387: Warning: line too long ./Tutorial/chapter_align.tex:2389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2404: Warning: line too long ./Tutorial/chapter_align.tex:2404: Warning: line too long ./Tutorial/chapter_align.tex:2405: Warning: line too long ./Tutorial/chapter_align.tex:2405: Warning: line too long ./Tutorial/chapter_align.tex:2409: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2415: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: line too long ./Tutorial/chapter_align.tex:2421: Warning: line too long ./Tutorial/chapter_align.tex:2424: Warning: line too long ./Tutorial/chapter_align.tex:2427: Warning: line too long ./Tutorial/chapter_align.tex:2430: Warning: line too long ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2458: Warning: line too long ./Tutorial/chapter_align.tex:2460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2465: Warning: line too long ./Tutorial/chapter_align.tex:2467: Warning: line too long ./Tutorial/chapter_align.tex:2469: Warning: line too long ./Tutorial/chapter_align.tex:2471: Warning: line too long ./Tutorial/chapter_align.tex:2473: Warning: line too long ./Tutorial/chapter_align.tex:2476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2533: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2534: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2548: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2685: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2772: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2788: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2825: Warning: line too long ./Tutorial/chapter_align.tex:2825: Warning: line too long ./Tutorial/chapter_align.tex:2845: Warning: line too long ./Tutorial/chapter_align.tex:2848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2880: Warning: line too long ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2895: Warning: line too long ./Tutorial/chapter_align.tex:2895: Warning: line too long ./Tutorial/chapter_align.tex:2897: Warning: line too long ./Tutorial/chapter_align.tex:2897: Warning: line too long ./Tutorial/chapter_align.tex:2899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2930: Warning: line too long ./Tutorial/chapter_align.tex:2930: Warning: line too long ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2940: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2996: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3020: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3047: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3047: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3054: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3082: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3086: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3183: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3230: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3231: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3235: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3244: Warning: line too long ./Tutorial/chapter_align.tex:3244: Warning: line too long ./Tutorial/chapter_align.tex:3258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3269: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3348: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3457: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3458: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3472: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3581: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3608: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3610: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3628: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3631: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3657: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3662: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3795: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3798: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3824: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:57: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:222: Warning: line too long ./Tutorial/chapter_pairwise.tex:238: Warning: line too long ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:358: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:422: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:462: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:470: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:472: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:478: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:492: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:495: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:496: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:500: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:505: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:508: Warning: overfull line in array : array too wide ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:508: Warning: line too long ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:602: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:691: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:712: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:752: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:781: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:787: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:802: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:844: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:858: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:979: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1071: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1085: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1152: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1229: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1380: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1700: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1702: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1711: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1725: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1726: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1733: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1734: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1735: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1736: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1737: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1740: Warning: overfull line in array : array too wide ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1740: Warning: line too long ./Tutorial/chapter_pairwise.tex:1748: Warning: line too long ./Tutorial/chapter_pairwise.tex:1750: Warning: line too long ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1769: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1789: Warning: line too long ./Tutorial/chapter_pairwise.tex:1804: Warning: line too long ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1847: Warning: '_' occurring outside math mode ./Tutorial/chapter_pairwise.tex:1859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1859: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1911: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1916: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1967: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1968: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:1998: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise.tex:2109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1: Warning: line too long ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:24: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:28: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:95: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:169: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:368: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:372: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:666: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:667: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:689: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:894: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:909: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:970: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1046: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1074: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1101: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1152: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1179: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1256: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1311: Warning: '_' occurring outside math mode ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1376: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1378: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1487: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_msa.tex:1528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:1: Warning: line too long ./Tutorial/chapter_pairwise2.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:13: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:56: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:61: Warning: line too long ./Tutorial/chapter_pairwise2.tex:63: Warning: line too long ./Tutorial/chapter_pairwise2.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:142: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pairwise2.tex:185: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:33: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:43: Warning: line too long ./Tutorial/chapter_blast.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:66: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:66: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:67: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:200: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:200: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:234: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:246: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:367: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:367: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:438: Warning: line too long ./Tutorial/chapter_blast.tex:440: Warning: line too long ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:451: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:453: Warning: Image in text ./Tutorial/chapter_blast.tex:457: Warning: Image in text ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:484: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:490: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:83: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:84: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:85: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:88: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:100: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:103: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:104: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:110: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:360: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:361: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:405: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:406: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:410: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:413: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:414: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:444: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:445: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:475: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:476: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:477: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:503: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:557: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:561: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:562: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:563: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:591: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:620: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:621: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:622: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:627: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:630: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:633: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:660: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:700: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:705: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:719: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:720: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:727: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:733: Warning: line too long ./Tutorial/chapter_searchio.tex:735: Warning: line too long ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:738: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:740: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:743: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:744: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:756: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:778: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:850: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:850: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:852: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:853: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:853: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:922: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:922: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:923: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:966: Warning: line too long ./Tutorial/chapter_searchio.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:973: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:983: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:996: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1000: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1003: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1008: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1009: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1010: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1014: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1014: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1015: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1025: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1027: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1032: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1032: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1035: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1055: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1058: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1083: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1084: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1093: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1139: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1140: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1140: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1141: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1155: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1163: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1165: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1168: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:1: Warning: line too long ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:15: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:200: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:323: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:325: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:481: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:499: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:571: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:607: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:629: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:657: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:665: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:673: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:775: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:792: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:827: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:856: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:904: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:909: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:956: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:992: Warning: line too long ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1034: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1043: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1051: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1065: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1074: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1088: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1089: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1090: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1094: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1108: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1111: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1202: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1220: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1440: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1441: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1483: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:1: Warning: line too long ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:32: Warning: line too long ./Tutorial/chapter_uniprot.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:78: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:87: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:136: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:247: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:249: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:314: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:341: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:444: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:444: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:446: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:465: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:488: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:288: Warning: Image in text ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:363: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:683: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:924: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1276: Warning: Image in text ./Tutorial/chapter_pdb.tex:1295: Warning: line too long ./Tutorial/chapter_pdb.tex:1389: Warning: Image in text ./Tutorial/chapter_pdb.tex:1474: Warning: overfull line in array : array too wide ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1474: Warning: line too long ./Tutorial/chapter_pdb.tex:1603: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:1665: Warning: '_' occurring outside math mode ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:107: Warning: Image in text ./Tutorial/chapter_phylo.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:124: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:184: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:184: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:209: Warning: Image in text ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:390: Warning: line too long ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:394: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:404: Warning: Image in text ./Tutorial/chapter_phylo.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:427: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:428: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:430: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:432: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:453: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:464: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:486: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:512: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:526: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:537: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:537: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:614: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:671: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:703: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:750: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1: Warning: line too long ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:11: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:12: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:14: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:24: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:36: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:41: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:64: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:142: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:213: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:232: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:244: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:255: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:255: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:300: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:305: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:306: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:309: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:346: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:395: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:438: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:570: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:586: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:590: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:592: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:639: Warning: line too long ./Tutorial/chapter_motifs.tex:641: Warning: line too long ./Tutorial/chapter_motifs.tex:647: Warning: line too long ./Tutorial/chapter_motifs.tex:649: Warning: line too long ./Tutorial/chapter_motifs.tex:658: Warning: line too long ./Tutorial/chapter_motifs.tex:662: Warning: line too long ./Tutorial/chapter_motifs.tex:664: Warning: line too long ./Tutorial/chapter_motifs.tex:673: Warning: line too long ./Tutorial/chapter_motifs.tex:675: Warning: line too long ./Tutorial/chapter_motifs.tex:676: Warning: line too long ./Tutorial/chapter_motifs.tex:678: Warning: line too long ./Tutorial/chapter_motifs.tex:684: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:684: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:693: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:709: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:746: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:838: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:846: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:869: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:869: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:871: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:877: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:877: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:878: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:879: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:880: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:881: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:882: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:883: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:884: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:885: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:887: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:900: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:901: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:902: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:902: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:962: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:997: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1063: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1076: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1133: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1171: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1191: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1194: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1254: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1299: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1469: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1506: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1577: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1582: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1598: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1615: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1616: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1617: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1618: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1619: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_motifs.tex:1650: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1651: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1651: Warning: '_' occurring outside math mode ./Tutorial/chapter_motifs.tex:1652: Warning: '_' occurring outside math mode ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:6: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:8: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:26: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:39: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:43: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:49: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:51: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:76: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:84: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:86: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:112: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cluster.tex:115: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'x' failed ./Tutorial/chapter_cluster.tex:117: Warning: Application of '\=' on 'y' failed ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:162: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:167: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:174: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:176: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:177: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:178: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:179: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:182: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:233: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:235: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:237: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:239: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:241: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:245: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:258: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:261: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:262: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:264: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:265: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:266: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:268: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:272: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:274: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:275: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:281: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:288: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:288: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:328: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:331: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:332: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:336: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:338: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:345: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:347: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:356: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:365: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:382: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:384: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:385: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:386: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:387: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:390: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:417: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:419: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:423: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:436: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:447: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:449: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:463: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:509: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:513: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:513: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:515: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:521: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:521: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:525: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:527: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:527: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:531: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:539: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:541: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:542: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:543: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:544: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:545: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:546: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:547: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:550: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:583: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:607: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:611: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:616: Warning: Cannot output that numerical entity: U+00B7 ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:637: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:638: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:639: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:690: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:692: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:711: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:749: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:767: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:771: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:774: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:776: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:779: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:789: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:800: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:801: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:817: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:818: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:819: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:820: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:823: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:832: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:833: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:834: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:835: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:836: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:840: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:842: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:842: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:843: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:845: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:847: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:848: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:849: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:860: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:861: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:862: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:865: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:866: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:867: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:868: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:870: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:872: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:886: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:888: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:889: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:890: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:891: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:892: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:895: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:896: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:898: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:899: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:903: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:913: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:918: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:919: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:925: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:927: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:929: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:930: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:941: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:942: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:943: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:945: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:949: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:952: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:971: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:986: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:16: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:61: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:63: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:68: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:106: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:132: Warning: Image in text ./Tutorial/chapter_graphics.tex:132: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:144: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:163: Warning: Image in text ./Tutorial/chapter_graphics.tex:163: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:217: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:219: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:221: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:223: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:268: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:271: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:277: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:279: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:325: Warning: Image in text ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:325: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:351: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:396: Warning: Image in text ./Tutorial/chapter_graphics.tex:396: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: Image in text ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:430: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: Image in text ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:459: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:473: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:482: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: Image in text ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:564: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: Image in text ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:566: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:599: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:875: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:876: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:890: Warning: Image in text ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:890: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:914: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:917: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: Image in text ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:923: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:953: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:954: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1004: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:30: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:32: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:235: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:1: Warning: line too long ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:115: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:116: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:126: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:205: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:207: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:208: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:243: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:252: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:253: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:267: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:280: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:283: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:310: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:326: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:329: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:330: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:333: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:334: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:335: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:337: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:357: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:359: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:397: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:439: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:452: Warning: line too long ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:454: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:456: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:459: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:460: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:461: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:561: Warning: line too long ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:593: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:595: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:655: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:657: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:686: Warning: Undefined block in text mode: 'DIV' [class="equationcontainer"] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'SPAN' [class="equationnumber"] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'SPAN' [] ./Tutorial/chapter_cookbook.tex:688: Warning: Undefined block in text mode: 'DIV' [] ./Tutorial/chapter_cookbook.tex:694: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:694: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:695: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:715: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:759: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:766: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:777: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:796: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:799: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:804: Warning: line too long ./Tutorial/chapter_cookbook.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:821: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:826: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:904: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:915: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1031: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1042: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1053: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1056: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1056: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1094: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1094: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1117: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1127: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1129: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1163: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1163: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1211: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1242: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1265: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1265: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1287: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1308: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1341: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1341: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1341: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1364: Warning: line too long ./Tutorial/chapter_cookbook.tex:1365: Warning: line too long ./Tutorial/chapter_cookbook.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1370: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1398: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1399: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1413: Warning: Image in text ./Tutorial/chapter_cookbook.tex:1421: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:1426: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:1: Warning: line too long ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:22: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:62: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:73: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:75: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:111: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:114: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:120: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:154: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:187: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:189: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:193: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:195: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:197: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:198: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:212: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:222: Warning: line too long ./Tutorial/chapter_testing.tex:275: Warning: line too long ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:284: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:297: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:319: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:371: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:373: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:389: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:401: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:402: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:403: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:407: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_testing.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:11: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:58: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_contributing.tex:70: Warning: '_' occurring outside math mode ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:37: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:38: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:128: Warning: line too long ./Tutorial.tex:181: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:193: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:193: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:203: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:226: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:226: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:238: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:238: Warning: Application of '\'' on 'o' failed Fixpoint reached in 2 step(s) pdflatex --shell-escape "\def\bpversion{1.83}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file Tutorial.aux. (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map} <./images/biopython_logo.pdf>] No file Tutorial.toc. pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.102 \include{Tutorial/chapter_introduction} [1] (./Tutorial/chapter_introduction.tex Chapter 1. LaTeX Warning: Citation `chapman2000' on page 2 undefined on input line 8. [2] LaTeX Warning: Citation `cock2009' on page 3 undefined on input line 89. LaTeX Warning: Citation `chapman2000' on page 3 undefined on input line 93. LaTeX Warning: Citation `hamelryck2003a' on page 3 undefined on input line 94. LaTeX Warning: Citation `dehoon2004' on page 3 undefined on input line 95. LaTeX Warning: Citation `pritchard2006' on page 3 undefined on input line 96. LaTeX Warning: Citation `talevich2012' on page 3 undefined on input line 97. LaTeX Warning: Citation `cock2010' on page 3 undefined on input line 98. [3] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 120--126 Underfull \hbox (badness 10000) in paragraph at lines 132--134 (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/C3217FD04973F24516F5530BB525A22CBD02851C2FB632864165FCA4920 46548.pygtex) [4 <./images/biopython_logo_old.jpg>] LaTeX Warning: Reference `sec:seq-comparison' on page 5 undefined on input line 183. Overfull \hbox (2.99303pt too wide) in paragraph at lines 185--187 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . LaTeX Warning: Reference `sec:appendix-handles' on page 5 undefined on input li ne 189. [5]) [6] (./Tutorial/chapter_quick_start.tex Chapter 2. LaTeX Warning: Reference `chapter:cookbook' on page 7 undefined on input line 1 4. LaTeX Warning: Reference `chapter:seq_objects' on page 7 undefined on input lin e 19. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612CBD02851C2FB632864165FCA4920 46548.pygtex [7]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535ABBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 8 undefined on input line 45. LaTeX Warning: Reference `sec:sequence-parsing' on page 8 undefined on input li ne 65. LaTeX Warning: Reference `chapter:entrez' on page 8 undefined on input line 65. LaTeX Warning: Reference `chapter:uniprot' on page 8 undefined on input line 65 . LaTeX Warning: Reference `subsec:align_clustal' on page 8 undefined on input li ne 65. [8] LaTeX Warning: Reference `chapter:seqio' on page 9 undefined on input line 72. LaTeX Warning: Reference `sec:connecting-with-biological-databases' on page 9 u ndefined on input line 79. (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B0213346781855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26DBD02851C2FB632864165FCA4920 46548.pygtex [9]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F2BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:align' on page 10 undefined on input line 145 . LaTeX Warning: Reference `chapter:cookbook' on page 10 undefined on input line 150. LaTeX Warning: Reference `chapter:entrez' on page 10 undefined on input line 15 8. LaTeX Warning: Reference `chapter:uniprot' on page 10 undefined on input line 1 59. [10] LaTeX Warning: Reference `chapter:cookbook' on page 11 undefined on input line 169. ) [11] (./Tutorial/chapter_seq_objects.tex Chapter 3. LaTeX Warning: Reference `chapter:seq_annot' on page 12 undefined on input line 5. LaTeX Warning: Reference `chapter:seqio' on page 12 undefined on input line 5. (./_minted-Tutorial/048D805D0CE39D0271B0A9A9F6FA0B90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CCFAD09A7C678CC6F23FB63113DD1EDCBD02851C2FB632864165FCA4920 46548.pygtex) [12] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0F44B540F3531194878FC29AF017902BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/739024CAA2FC886FEC674E3B4C3FD3A4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:mutable-seq' on page 13 undefined on input line 8 6. (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E97622504BD02851C2FB632864165FCA4920 46548.pygtex [13]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D9386420BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79ABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 14 undefined on input l ine 155. LaTeX Warning: Reference `chapter:seqio' on page 14 undefined on input line 157 . (./_minted-Tutorial/732D927996C79742AC990312B3D6EEB0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C270BD02851C2FB632864165FCA4920 46548.pygtex [14]) (./_minted-Tutorial/14DC45CA9BEAFF3B8A49C8E43A9FF33CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FC9049D1029A23D48B33F9D862ACC47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D394BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8DBD02851C2FB632864165FCA4920 46548.pygtex [15]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF17BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 16 undefined on input line 278. (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC0BD02851C2FB632864165FCA4920 46548.pygtex [16]) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C8753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B386BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seq-module-functions' on page 17 undefined on inp ut line 353. (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A70BD02851C2FB632864165FCA4920 46548.pygtex [17]) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF82BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD64BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF98BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59D2BC7361BC3147180163BF1D4DDE79BD02851C2FB632864165FCA4920 46548.pygtex [18]) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B55990BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 19 undefined on input li ne 469. LaTeX Warning: Reference `sec:seq-module-functions' on page 19 undefined on inp ut line 475. (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874DBD02851C2FB632864165FCA4920 46548.pygtex [19]) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/06DBC59F2EAD33E7A951888537876615BD02851C2FB632864165FCA4920 46548.pygtex) [20] (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE6BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 21 undefined on input line 598. (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C338BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F2723D89FDBA794E82A8285BABB369CB669566ECC2CFEDC7429F829576A D0DC6.pygtex [21]) (./_minted-Tutorial/64147FAF6F5C5028B073B3C809EE3E84BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFDB859800920408E228736AD921B5DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D95D20C3283ADEDD76DAB3382BB1B040BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE451BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2EBD02851C2FB632864165FCA4920 46548.pygtex [22]) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CBBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seq-to-string' on page 23 undefined on input line 742. (./_minted-Tutorial/DC4041D75FEA645B55AE8CD6DE45F64EBD02851C2FB632864165FCA4920 46548.pygtex [23]) (./_minted-Tutorial/43513B61020FA6436B91828F06EC1F8FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE692511644781A937B5C5E0025044B3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D388BA3E0B925CD1E55F633CBAD85C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/651C905E140A6022D7D692602C70F0A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C0BD02851C2FB632864165FCA4920 46548.pygtex)) [24] [25] (./Tutorial/chapter_seq_annot.tex Chapter 4. LaTeX Warning: Reference `chapter:seq_objects' on page 26 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seqio' on page 26 undefined on input line 4. (./_minted-Tutorial/032C91EF2474FD3535629DC0CDABC809BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seq_objects' on page 26 undefined on input li ne 20. LaTeX Warning: Reference `chapter:seqio' on page 26 undefined on input line 20. LaTeX Warning: Reference `sec:FASTQ-filtering-example' on page 26 undefined on input line 33. [26] LaTeX Warning: Reference `sec:seq_features' on page 27 undefined on input line 37. LaTeX Warning: Reference `chapter:seqio' on page 27 undefined on input line 47. (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC2BD02851C2FB632864165FCA4920 46548.pygtex [27]) (./_minted-Tutorial/510764EE0BB38AD6C688E71989677507669566ECC2CFEDC7429F829576A D0DC6.pygtex) LaTeX Warning: Reference `chapter:quick_start' on page 28 undefined on input li ne 130. LaTeX Warning: Reference `chapter:seqio' on page 28 undefined on input line 132 . (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D849822BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD2085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D9669566ECC2CFEDC7429F829576A D0DC6.pygtex [28]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A669566ECC2CFEDC7429F829576A D0DC6.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 29 undefined on input line 211 . (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA601BD02851C2FB632864165FCA4920 46548.pygtex [29]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F926BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seq_features' on page 30 undefined on input line 275. LaTeX Warning: Reference `sec:locations' on page 30 undefined on input line 284 . LaTeX Warning: Reference `sec:locations' on page 30 undefined on input line 292 . [30] [31] (./_minted-Tutorial/AD47AD29D6F7927F9406BE5609676388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F3BD02851C2FB632864165FCA4920 46548.pygtex [32]) (./_minted-Tutorial/EF871449F651FE5E7DFD84165065B14ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A1BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:locations' on page 33 undefined on input line 502 . (./_minted-Tutorial/D86C559003980DC8749AF92530435DFDBD02851C2FB632864165FCA4920 46548.pygtex) [33] (./_minted-Tutorial/1C0A562378DEEE8E210765437B3E1700BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0C3ED75879971F09D72A92585654A32CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E3920BD02851C2FB632864165FCA4920 46548.pygtex [34]) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seq-comparison' on page 35 undefined on input lin e 600. LaTeX Warning: Reference `sec:locations' on page 35 undefined on input line 608 . (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F9689BD02851C2FB632864165FCA4920 46548.pygtex [35]) LaTeX Warning: Reference `chapter:seqio' on page 36 undefined on input line 648 . LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 36 undefined on i nput line 651. (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B2340BD02851C2FB632864165FCA4920 46548.pygtex [36]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEBBD02851C2FB632864165FCA4920 46548.pygtex [37]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A85BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C59A3BD3577D6DA7BB95528A68C9B311BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D2457BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 38 undefined on input l ine 793. (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF82BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:FASTQ-slicing-off-primer' on page 38 undefined on input line 805. LaTeX Warning: Reference `sec:FASTQ-slicing-off-adaptor' on page 38 undefined o n input line 806. LaTeX Warning: Reference `chapter:seqio' on page 38 undefined on input line 819 . (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDFBD02851C2FB632864165FCA4920 46548.pygtex [38]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF1718501669BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1BBD02851C2FB632864165FCA4920 46548.pygtex [39]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E7BD02851C2FB632864165FCA4920 46548.pygtex) [40] (./_minted-Tutorial/B650815DDD2D74A390771EC1DCA2F0EFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9A2AD70EFB345CF0A1412F8838EE8843BD02851C2FB632864165FCA4920 46548.pygtex)) [41] (./Tutorial/chapter_seqio.tex Chapter 5. LaTeX Warning: Reference `chapter:quick_start' on page 42 undefined on input li ne 4. LaTeX Warning: Reference `chapter:seq_annot' on page 42 undefined on input line 4. (./_minted-Tutorial/3F38D5012926DD7C810DA2383F53D498BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 42 undefined on input line 12. LaTeX Warning: Reference `chapter:seq_objects' on page 42 undefined on input li ne 12. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 42 undefined on in put line 14. LaTeX Warning: Reference `sec:SeqIO_Online' on page 42 undefined on input line 22. LaTeX Warning: Reference `sec:appendix-handles' on page 42 undefined on input l ine 22. (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB6789543DFECA235A69AE23006BA05B 4EB70.pygtex [42]) LaTeX Warning: Reference `sec:sequence-parsing' on page 43 undefined on input l ine 43. (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE5009549543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB21BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:sequence-parsing-plus-pylab' on page 43 undefined on input line 68. (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F19543DFECA235A69AE23006BA05B 4EB70.pygtex [43]) (./_minted-Tutorial/C82398A4A04383A063D2E648811230529543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC04910736669566ECC2CFEDC7429F829576A D0DC6.pygtex) [44] LaTeX Warning: Reference `chapter:seq_annot' on page 45 undefined on input line 150. (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C26669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD1622219543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD829543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE6BD02851C2FB632864165FCA4920 46548.pygtex [45]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E734519543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC395669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/58A82383AA9DEBBEEEC6694BA2DE777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9562C263804C6DD613F075A435553A9FBD02851C2FB632864165FCA4920 46548.pygtex [46]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C91BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:writing-sequence-files' on page 47 undefined on i nput line 306. (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:appendix-handles' on page 47 undefined on input l ine 329. (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/23394A4616015FFE4619934E98424178BD02851C2FB632864165FCA4920 46548.pygtex [47]) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C09BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-index-bgzf' on page 48 undefined on input l ine 398. LaTeX Warning: Reference `sec:efetch' on page 48 undefined on input line 414. [48] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD4769543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E4215990669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D79543DFECA235A69AE23006BA05B 4EB70.pygtex [49]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D669566ECC2CFEDC7429F829576A D0DC6.pygtex) LaTeX Warning: Reference `chapter:entrez' on page 50 undefined on input line 50 4. LaTeX Warning: Reference `sec:entrez-guidelines' on page 50 undefined on input line 504. LaTeX Warning: Reference `chapter:uniprot' on page 50 undefined on input line 5 09. (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/DDD2E1D663317F4FFB7F8B7F03E4989FBD02851C2FB632864165FCA4920 46548.pygtex [50]) LaTeX Warning: Reference `sec:seqio_todict' on page 51 undefined on input line 566. LaTeX Warning: Reference `sec:SeqIO-index' on page 51 undefined on input line 5 72. LaTeX Warning: Reference `sec:SeqIO-index-db' on page 51 undefined on input lin e 576. LaTeX Warning: Reference `sec:SeqIO-indexing-discussion' on page 51 undefined o n input line 579. LaTeX Warning: Reference `sec:SeqIO-index' on page 51 undefined on input line 5 89. (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF6BD02851C2FB632864165FCA4920 46548.pygtex [51]) (./_minted-Tutorial/FE4CF732C73126A3874795838D95FAB5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F669566ECC2CFEDC7429F829576A D0DC6.pygtex) LaTeX Warning: Reference `sec:fasta-parsing' on page 52 undefined on input line 662. (./_minted-Tutorial/55430EAFE498E385842834603E0B8C869543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB89543DFECA235A69AE23006BA05B 4EB70.pygtex [52]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E83669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/74E272C92C546FD61FA6D3DA5C178893BD02851C2FB632864165FCA4920 46548.pygtex) [53] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:fastq-indexing' on page 54 undefined on input lin e 784. (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 54 undefined on input line 805. (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [54]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 849--854 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-sort' on page 55 undefined on input line 86 7. Overfull \hbox (4.48064pt too wide) in paragraph at lines 892--895 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [55]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 56 undefined on input line 949. (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [56] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 46548.pygtex) [57] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD73429543DFECA235A69AE23006BA05B 4EB70.pygtex [58]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D4669566ECC2CFEDC7429F829576A D0DC6.pygtex [59]) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 60 undefined on input line 1190. (./_minted-Tutorial/C194E2231D844AE7D0223173D2A899919543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/29D12D495374A5A8C37AEB7083851DEABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-fastq-conversion' on page 60 undefined on i nput line 1233. LaTeX Warning: Reference `sec:SeqIO-fasta-qual-conversion' on page 60 undefined on input line 1233. [60] LaTeX Warning: Reference `sec:seq-reverse-complement' on page 61 undefined on i nput line 1248. (./_minted-Tutorial/920133226A22EEB682D854077D7FB78FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 61 undefine d on input line 1259. (./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 61 undefined on input li ne 1312. [61] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 62 undefined on input l ine 1332. (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1350--1352 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [62] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1394--1398 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 63 undefined on input line 1413. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [63] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:alignmentobject' on page 64 undefined on input li ne 6. LaTeX Warning: Reference `sec:alignmentparsers' on page 64 undefined on input l ine 6. LaTeX Warning: Reference `chapter:pairwise' on page 64 undefined on input line 6. LaTeX Warning: Reference `chapter:msa' on page 64 undefined on input line 8. LaTeX Warning: Reference `sec:alignmentparsers' on page 64 undefined on input l ine 13. LaTeX Warning: Reference `chapter:pairwise' on page 64 undefined on input line 13. (./_minted-Tutorial/3ADFB33A8FCD44DE0B5C01507B2DB238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25A6E63137B6A56CD2D73764BCE1E544BD02851C2FB632864165FCA4920 46548.pygtex) [64] (./_minted-Tutorial/D13F0042F125CA05626436DE4E8CB781BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2DB00FB61E886C9B2B0C32167865EF74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0949AD3DC6BE9CCF58F64F79BD4915A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CF32FADC31B097962A862D90D8A10CBBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignmentparsers' on page 65 undefined on input l ine 77. (./_minted-Tutorial/903AB6690A1CF4AE727DC1FFB77A1C15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6F33B32BDC9680C9C7D7040612986506BD02851C2FB632864165FCA4920 46548.pygtex [65]) (./_minted-Tutorial/5F6577782E5DE79D2397B15BF86DC967BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_sequences_coordinates' on page 66 undefi ned on input line 115. (./_minted-Tutorial/07DC41A8BF287DA498DE4B15959D18BBBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:generalized-pairwise' on page 66 undefined on inp ut line 149. [66] LaTeX Warning: Reference `sec:pairwise-basic' on page 67 undefined on input lin e 153. LaTeX Warning: Reference `subsec:align_clustal' on page 67 undefined on input l ine 155. (./_minted-Tutorial/591BBA1E8577010030620B01E5A14F20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB5982C8C32C47C82ABE174DA3544818BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2AEA73DD0A6E98B0116831C28909C61BD02851C2FB632864165FCA4920 46548.pygtex [67]) (./_minted-Tutorial/64BF6D35A03F70AEAAA2AAA3DC43503EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CBD23C79E3C74FF315A3AB96291C072CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/550CDC6F594FE8F9C8698B9498651D1FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C3B7BF91745CF80C21DDA7BC7E12DB9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D369F36288FDAE66507B7EA3133785BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/275C57CA9346FD92D66ED772EFB638D5BD02851C2FB632864165FCA4920 46548.pygtex [68]) (./_minted-Tutorial/E351517D2F72634807B0BA082864BC91BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/561499D273F7482F80B85971281528A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F8F8BF3E533C10411B330D0DFBBAEDBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (39.79793pt too wide) in paragraph at lines 303--304 [][]\OT1/cmtt/m/n/10 alignment2.sequences[]\OT1/cmr/m/n/10 , and if they are eq ual, by com-par-ing [][]\OT1/cmtt/m/n/10 alignment1.coordinates []\OT1/cmr/m/n/ 10 to [][]\OT1/cmtt/m/n/10 alignment2.coordinates[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/FFF39C1BDE890CFD0D421309D7984FE9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/94DE849C111B89EAF838DA335BBAF476BD02851C2FB632864165FCA4920 46548.pygtex [69]) (./_minted-Tutorial/EF8DD639E0B998522A0CCE5992B06FFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EFE3503086B619AD8E4D3CDE2157BB92BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/189516A17EE4564FFF9585613681ECABBD02851C2FB632864165FCA4920 46548.pygtex [70]) (./_minted-Tutorial/C6DB00074C37AA3A343241C7A25F8C48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A18B67253A310A659816946E20BE7953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C2BA4F675E7D3F80C73C1FC12B124E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BE9C889E033D5EBCC58AA22DE23A73A1BD02851C2FB632864165FCA4920 46548.pygtex [71]) (./_minted-Tutorial/7D0BA7CE3F074B380509C5718A93E555BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72E54CB8027D30B56F048D9BB0D4B8A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FA0C2F12873C34FFB4AEBD61E0691477BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F1427CDA782B7144A8EBFF22527912FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7FCEB2243EF9A554817F810B090D8B1BD02851C2FB632864165FCA4920 46548.pygtex [72]) (./_minted-Tutorial/76E34587E6003DC67C174EEC524C4088BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BF95AC10B0E3B6757FAD7C8076C4317BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5821BC1C27000ECB009BBA0C76C836CCBD02851C2FB632864165FCA4920 46548.pygtex [73]) (./_minted-Tutorial/FCF2AE05D74D27A241E13170CFA42D6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/727B246DA4EC05B845383788E75A74DDBD02851C2FB632864165FCA4920 46548.pygtex [74]) (./_minted-Tutorial/6625CF78F73663DAA9EAD5F94CA7F09CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B61C21FD4FCD600A92C640255AEC19E4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 75 undefined on input line 626. (./_minted-Tutorial/F6D7600C21431793B09B1445F3A714A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72CCEF720EA6C136F734C715ADE5D584BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CE5E2A26CDD0636AB39B8066B992C33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/135C4B907D639EE153F66AD086FAB9B9BD02851C2FB632864165FCA4920 46548.pygtex [75]) (./_minted-Tutorial/1F25F002C64691EAC8F06C6A94F725ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6D493E8CA48305C711FA03FFB282583BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_chain' on page 76 undefined on input lin e 711. (./_minted-Tutorial/E5063A0500138E66FD3E42A6E0C9FA3EBD02851C2FB632864165FCA4920 46548.pygtex [76]) (./_minted-Tutorial/1B43BDD39D94F9C28C02B03683B294D7BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (17.52367pt too wide) in paragraph at lines 727--1 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 122835789:122907314 ) (./_minted-Tutorial/7728ACBB8B5654A283BAC5E395F18EFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/65029EC2DE0387CBC1E35DD57E5037FCBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (17.52367pt too wide) in paragraph at lines 768--769 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 111982717:112009302 [77] (./_minted-Tutorial/4EEFD900807408EA076A3B9A9EA19BA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16E885E4228A1D53A85034B247975B7C669566ECC2CFEDC7429F829576A D0DC6.pygtex [78]) (./_minted-Tutorial/580FE58D8556F89B4F9DAB0B87E3CB6DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/436183BFDCF16E9CD994EFC472B940F4BD02851C2FB632864165FCA4920 46548.pygtex [79]) LaTeX Warning: Reference `sec:SeqIO_directionaries' on page 80 undefined on inp ut line 874. (./_minted-Tutorial/02A14522C76BFFA1B6703CE73CEB4FE4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:msa_codons' on page 80 undefined on input line 90 5. LaTeX Warning: Reference `subsec:align_reading' on page 80 undefined on input l ine 912. LaTeX Warning: Reference `chapter:pairwise' on page 80 undefined on input line 912. (./_minted-Tutorial/3168C611E2DFD6FF95EFCF8DD8AC500ABD02851C2FB632864165FCA4920 46548.pygtex [80]) (./_minted-Tutorial/0D8823DC13281FA67190F84B2EB65487BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DABC9E3F5430B52B4495D933CEF8F977BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:Bio.SeqIO-input' on page 81 undefined on input li ne 973. LaTeX Warning: Reference `sec:alignformats' on page 81 undefined on input line 973. [81] LaTeX Warning: Reference `sec:alignformats' on page 82 undefined on input line 980. (./_minted-Tutorial/63E9C7C15D3D496819075F363F942676BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignments' on page 82 undefined on input line 99 1. (./_minted-Tutorial/2CA86AB1748972B28293A90E94331AFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93389450EEC92A30A6EAD14CB609C12EBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignformats' on page 82 undefined on input line 1017. (./_minted-Tutorial/326D8AE82DD364BB2AE47D3268F235E0BD02851C2FB632864165FCA4920 46548.pygtex [82]) LaTeX Warning: Reference `subsec:align_bed' on page 83 undefined on input line 1049. (./_minted-Tutorial/BA1C75B95D0577519E26FA1234C0E78FBD02851C2FB632864165FCA4920 46548.pygtex [83]) LaTeX Warning: Reference `subsec:align_a2m' on page 84 undefined on input line 1081. LaTeX Warning: Reference `subsec:align_bed' on page 84 undefined on input line 1082. LaTeX Warning: Reference `subsec:align_bigbed' on page 84 undefined on input li ne 1083. LaTeX Warning: Reference `subsec:align_bigmaf' on page 84 undefined on input li ne 1084. LaTeX Warning: Reference `subsec:align_bigpsl' on page 84 undefined on input li ne 1085. LaTeX Warning: Reference `subsec:align_chain' on page 84 undefined on input lin e 1086. LaTeX Warning: Reference `subsec:align_clustal' on page 84 undefined on input l ine 1087. LaTeX Warning: Reference `subsec:align_emboss' on page 84 undefined on input li ne 1088. LaTeX Warning: Reference `subsec:align_exonerate' on page 84 undefined on input line 1089. LaTeX Warning: Reference `subsec:align_fasta' on page 84 undefined on input lin e 1090. LaTeX Warning: Reference `subsec:align_hhr' on page 84 undefined on input line 1091. LaTeX Warning: Reference `subsec:align_maf' on page 84 undefined on input line 1092. LaTeX Warning: Reference `subsec:align_mauve' on page 84 undefined on input lin e 1093. LaTeX Warning: Reference `subsec:align_msf' on page 84 undefined on input line 1094. LaTeX Warning: Reference `subsec:align_nexus' on page 84 undefined on input lin e 1095. LaTeX Warning: Reference `subsec:align_phylip' on page 84 undefined on input li ne 1096. LaTeX Warning: Reference `subsec:align_psl' on page 84 undefined on input line 1097. LaTeX Warning: Reference `subsec:align_sam' on page 84 undefined on input line 1098. LaTeX Warning: Reference `subsec:align_stockholm' on page 84 undefined on input line 1099. LaTeX Warning: Reference `subsec:align_tabular' on page 84 undefined on input l ine 1100. Overfull \hbox (47.19006pt too wide) in paragraph at lines 1079--1102 [] LaTeX Warning: Reference `subsec:align_tabular' on page 84 undefined on input l ine 1108. (./_minted-Tutorial/F3C6459BBEE5DC58BA23DE6A902E861E669566ECC2CFEDC7429F829576A D0DC6.pygtex [84]) (./_minted-Tutorial/878C4A71864137A879F515402C152953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62FDEB3CA937C176A55D32E8E2D9734FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/652288688656D87DB2236C858CA5E234BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_clustal' on page 85 undefined on input l ine 1165. (./_minted-Tutorial/02ED2ECCD74F4EE93C5BD73ECF98808EBD02851C2FB632864165FCA4920 46548.pygtex [85]) (./_minted-Tutorial/F72FF9290B96E9DB4BB47406647CD586BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/620D3E672393822494756E9230009A53BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9E9D51005B371CD3068E46CFFF5138ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/27810C4F2B279E7D09594E917E7CCC5C669566ECC2CFEDC7429F829576A D0DC6.pygtex [86]) (./_minted-Tutorial/408828C89C3A93995AAF8919261A3BACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72457E1B58E712485EE91BE4473EEE72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB98E799197F765387B6A45A09FAA7E4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E15CE8A0C57207AA19F76AD8E491A47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/088B23A633BB93F3628BB91E22FA9C32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9FECB08222E65B8690849E14245AD70BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7CAF6F4125F840746A040D87B213078BD02851C2FB632864165FCA4920 46548.pygtex [87]) LaTeX Warning: Reference `sec:alignments' on page 88 undefined on input line 13 14. (./_minted-Tutorial/13FAFA72DE7E5D7ED5C7AA146C87E07C669566ECC2CFEDC7429F829576A D0DC6.pygtex [88]) (./_minted-Tutorial/FCE46CA6ACACF0C7944504F6C593F092BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F582FFD514E469F0BCC94B0A8D6C2309BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_printing' on page 89 undefined on input line 1390. (./_minted-Tutorial/6C6E1CD361994D53909B5E92EDCC3A2ABD02851C2FB632864165FCA4920 46548.pygtex [89]) LaTeX Warning: Reference `subsec:align_fasta' on page 90 undefined on input lin e 1438. (./_minted-Tutorial/6B6B2C99C0A1F58F9A0A4D856A12EB29BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_phylip' on page 90 undefined on input li ne 1450. (./_minted-Tutorial/FF08D4C80088C9A776F6CA0B6D13CDA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7525AB42EC6D0D322D22333D6E0DB4C6BD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/F06485BF4AECFA0C2925D97B9BBBBFCCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71FC072DD12D6A49A5EF04056D641289BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0C4B3DD5091108A53F462038C0BF984BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E5CFE89E2460A5F7AEA9A9A70315A745669566ECC2CFEDC7429F829576A D0DC6.pygtex [91]) (./_minted-Tutorial/3145318078A1E0D11EF08F2B4A723DF9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/6BEDCFEC52171C194CCBEEE68336B6FEBD02851C2FB632864165FCA4920 46548.pygtex [92]) (./_minted-Tutorial/728D95FF1157A4F55E0F89EE37FBB3DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/775FBC2022BDA37BFA4EB2AB71CA857ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFED1C90C7E7C1ACD1F2455F0B1EB130BD02851C2FB632864165FCA4920 46548.pygtex [93]) LaTeX Warning: Citation `rice2000' on page 94 undefined on input line 1636. (./_minted-Tutorial/4031E6CD0032524E67FFDDFB760A32C3669566ECC2CFEDC7429F829576A D0DC6.pygtex [94]) (./_minted-Tutorial/DDA66B46BA334A6C95DED4D77AF3A329BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D49B53CB216BC60B4A0CD93F8EDCEEFEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B67982D457FD8E29E4C09FB1A86B6B5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AAF8B775C65E63C6DEA2CF99E4CF3F5CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C52714D3F31A23FF97AE13AC68F31D24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B1A4A6B67A42A8FE1F47A03C39D8C2BD02851C2FB632864165FCA4920 46548.pygtex [95]) (./_minted-Tutorial/32B0268F696E6C906B39B8A7E2EADB99BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_phylip' on page 96 undefined on input li ne 1744. (./_minted-Tutorial/369365DB6BB86DD5F99CDDDCBE808FC7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3DFC00B619541BFC22DB2A1F9E1CF3F1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B418F5413E3E5967675F1EE20E43E7D2669566ECC2CFEDC7429F829576A D0DC6.pygtex [96]) (./_minted-Tutorial/E7CA8E49B48EDEAC89645C5D46367209BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BF0EFC3BBA49964C1F7EDC699CA2119BD02851C2FB632864165FCA4920 46548.pygtex [97]) (./_minted-Tutorial/710584AB2A17222A6CF044216E625547BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F0E6F76CD168A7DA467A15173D3E5F5FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `slater2005' on page 98 undefined on input line 1878. (./_minted-Tutorial/2C7D1C8BB3FFCAE7F757F20452F57398669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F7D955447EE56C5213D504995DA81512BD02851C2FB632864165FCA4920 46548.pygtex [98]) (./_minted-Tutorial/4275ACEB46197BFA7CBB55DFB23D04F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7ECD6774A96C15E49BF845A3F32E9792BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E3F3096732803EAB55BEB5C85E00158BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D0CA54BA1AC51140D944EC7677AB40ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FCA7B705B226BD00CEBA6B5CA464C90BD02851C2FB632864165FCA4920 46548.pygtex) [99] (./_minted-Tutorial/991497AC1F8BC8EB3BC0932103D72E97BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_sam' on page 100 undefined on input line 1960. (./_minted-Tutorial/F3A6067477F91454C0E0F897247238A9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAB65899C8C61CAE9A5B9F57B0525168BD02851C2FB632864165FCA4920 46548.pygtex [100]) LaTeX Warning: Citation `maddison1997' on page 101 undefined on input line 2015 . (./_minted-Tutorial/4176F2D72DD806E2581563C9A3E1CCF8669566ECC2CFEDC7429F829576A D0DC6.pygtex) LaTeX Warning: Reference `chapter:phylo' on page 101 undefined on input line 20 43. (./_minted-Tutorial/E7795BC7D9C9EEDA96F7F0ACE547D6A8BD02851C2FB632864165FCA4920 46548.pygtex [101]) (./_minted-Tutorial/F479B578897BBBCA13291638972D27D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/70D9A814BC91183C4203F2C91A9F5D18BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `pearson1988' on page 102 undefined on input line 2094. LaTeX Warning: Citation `altschul1990' on page 102 undefined on input line 2094 . (./_minted-Tutorial/BB9243FFB4F82E108CA4783B9AE90032669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A79FD4B98960A552D11D76D39107647EBD02851C2FB632864165FCA4920 46548.pygtex [102]) (./_minted-Tutorial/35219A367A7A259D653DB851AFF9B48BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E8940648A6DC5BE55245ED0695D6637BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36B05D091F3889C47C41E8035C57ACCBD02851C2FB632864165FCA4920 46548.pygtex [103]) (./_minted-Tutorial/C7841EA697DC62B8874776CF6589B339BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `steinegger2019' on page 104 undefined on input line 21 90. (./_minted-Tutorial/01DB3E327B7A6B94CAC76D2A55FF51D8669566ECC2CFEDC7429F829576A D0DC6.pygtex [104]) [105] (./_minted-Tutorial/97B71D65044A8A79ABF94F73EAFCEEA0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/10F25524E3AEE86E3E204995105A190ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3202D4E9772EE38E2013380B2E2CC181BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08CF1EF07A3F38F868150C9856B58A27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6E8B87BC559E608D255ECEC23FB5033BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B02B23920569460C1CB82D1FCF7BF6B9BD02851C2FB632864165FCA4920 46548.pygtex [106]) (./_minted-Tutorial/50ECFF8668DB07517383C44AABCC8F2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2C72F0FFD36515704CE3627577398079BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E5C95FE7BAA0B71FB579FCFAD90A7EABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:partial-seq' on page 107 undefined on input line 2366. (./_minted-Tutorial/AC9AE3BAD46A3283D7695A8A1DFC09CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/608C2857C3DA290EF766A8CEF7B1C7B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCD1D44140BADB1AF9FB5D8E5554370DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B145C500B6E80787AD14F38D64D583D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5E41F1911035A7C9C91D8D3584522777BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (66.10475pt too wide) in paragraph at lines 2400--1 \OT1/cmr/m/n/10 Confidence val-ues for the pair-wise align-ment are stored un-d er the [][]\OT1/cmtt/m/n/10 "Confidence" []\OT1/cmr/m/n/10 key in the [][]\OT1/ cmtt/m/n/10 alignment.column_annotations [107]) LaTeX Warning: Citation `krogh1994' on page 108 undefined on input line 2412. LaTeX Warning: Citation `hughey1996' on page 108 undefined on input line 2412. LaTeX Warning: Reference `subsec:align_fasta' on page 108 undefined on input li ne 2412. LaTeX Warning: Reference `subsec:align_fasta' on page 108 undefined on input li ne 2415. (./_minted-Tutorial/7BD0A13AC34B05F6B26F4E5A3DE9CAD5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/490600366C0690E5A4119EE69F1A27BEBD02851C2FB632864165FCA4920 46548.pygtex [108]) (./_minted-Tutorial/AA2DF31C3E608D48FACD9B1AD6A3B06DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA18A90574233A7CBD7AC58CEE8C61ADBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_writing' on page 109 undefined on input line 2476. LaTeX Warning: Citation `darling2004' on page 109 undefined on input line 2481. (./_minted-Tutorial/C4EE37E97FADDD20B90D67D355ABC641669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/466D9AC63E30EC1D8DBB385FDDE97605669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9EFDBE406FBBC44613EA7FE6429D79CF669566ECC2CFEDC7429F829576A D0DC6.pygtex [109]) (./_minted-Tutorial/9A57704BA82726E81B0CFAC8EC274F18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/970B10888A855C998FC6B51F7B24852BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C9D0266C5AC74051B0CE621CD4A4DFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9B6E2D243CC026BFB3F3EC39E26649ABD02851C2FB632864165FCA4920 46548.pygtex [110]) (./_minted-Tutorial/876138142A523ACF7D2168D57A36547C669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8A2B8E693CDDB40736BBBEB205FAD998669566ECC2CFEDC7429F829576A D0DC6.pygtex [111]) (./_minted-Tutorial/F0EF92601DF394F0DE666A27F8EA38C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB568F215EFD0BAF6D3AB0AED2E3568FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6E86846A6EEB5463DCE1D426E20D18BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7AACEF698A7ECEA3201959C460F7C449BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD72B9B4FB0A7A55B3D4358101869C38BD02851C2FB632864165FCA4920 46548.pygtex [112]) (./_minted-Tutorial/42385B036BF17C722FAD3F83E75FDEF4BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (0.18794pt too wide) in paragraph at lines 2685--1 \OT1/cmr/m/n/10 Here, the writer makes use of the in-for-ma-tion stored in [][] \OT1/cmtt/m/n/10 alignments.metadata []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 alignments.identifiers ) LaTeX Warning: Reference `sec:alignments' on page 113 undefined on input line 2 726. (./_minted-Tutorial/A711A2B68D61BDEC7BBF208D12A5E99ABD02851C2FB632864165FCA4920 46548.pygtex [113]) (./_minted-Tutorial/A5E9CB9B5E078AE40453E67976FBFFB7BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `li2009' on page 114 undefined on input line 2774. (./_minted-Tutorial/00F8AB36DAF4F80C7F9570A5A27E5CBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A221309DA1262965A6A47038C07CA1EABD02851C2FB632864165FCA4920 46548.pygtex [114]) (./_minted-Tutorial/03997BF8FD904516364706538520D638BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8B9AA9FE7614ADF0166372B2B4DCBE98BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_bed' on page 115 undefined on input line 2821. (./_minted-Tutorial/D2E092FEC403E36D654CD1C513AC61BEBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_psl' on page 115 undefined on input line 2829. (./_minted-Tutorial/1602FA8DDE44CF495CA71021E8A69CA4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEC68A2971DD620A61F610A3EB178532BD02851C2FB632864165FCA4920 46548.pygtex [115]) (./_minted-Tutorial/B3AF874327BA15EBE6204D91C0D86CF7669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/617E2070639B6FAA65FFAE9505A68098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32B286EC4D6B81356503CD173A5CF440BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FFB280D587B0F04991BA484540291F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DBB25FD6EFAF4F04B1C523503FD7F57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7D2D9F2132871FD986A19CAFEF99AD9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/25F14621C45419CA1F5D3183667F338DBD02851C2FB632864165FCA4920 46548.pygtex [116]) (./_minted-Tutorial/924ADD068BEF8F0614EDD05997B9249DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (38.57419pt too wide) in paragraph at lines 2940--2941 \OT1/cmr/m/n/10 in [][]\OT1/cmtt/m/n/10 alignment.query.annotations["hard_clip_ right"] []\OT1/cmr/m/n/10 (or [][]\OT1/cmtt/m/n/10 alignment.query.annotations[ "hard_clip_left"][]\OT1/cmr/m/n/10 , LaTeX Warning: Reference `sec:alignments' on page 117 undefined on input line 2 942. (./_minted-Tutorial/9474707530175BC7B9D6A1D03533361EBD02851C2FB632864165FCA4920 46548.pygtex [117]) (./_minted-Tutorial/121ED15AC63942C5E8C155D208F51642669566ECC2CFEDC7429F829576A D0DC6.pygtex [118]) (./_minted-Tutorial/44C53D5554120E7C471E54177E855AAABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/473C2F0DACB920D96F956D9EC1E0FE2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C672D7F97D9560C4165396EE0AABB2FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E8B29E8871EDF193B23B50B7F8E78B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AEA5ACF2CDA6FED4928E102348916BFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EC0AA256D9EAEE293C008EDA1843C94BD02851C2FB632864165FCA4920 46548.pygtex [119]) (./_minted-Tutorial/2C4E6A03B034FAA4C45E9D84BB3CCD85BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_bed' on page 120 undefined on input line 3084. (./_minted-Tutorial/3F1B3C24801F420BC846C7C6EFB2F160BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex [120]) LaTeX Warning: Reference `subsec:align_bed' on page 121 undefined on input line 3119. (./_minted-Tutorial/FA4FFD0DB7DAF8EAF7DDF9EC40FBF9CDBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_clustal' on page 121 undefined on input line 3152. LaTeX Warning: Reference `subsec:align_bed' on page 121 undefined on input line 3154. (./_minted-Tutorial/9C68F3814A4AF124F08223E08EAB5EACBD02851C2FB632864165FCA4920 46548.pygtex [121]) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C46E00AFDD445BF5A1696DA110EC1108BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5D6C1752DC3E67EFB4B1F35AE1FE9CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/66E5C3A06978A0FE5189F36167EC3560BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDE2E897AFFF16770CB3BDE90724144BD02851C2FB632864165FCA4920 46548.pygtex [122]) LaTeX Warning: Citation `kent2002' on page 123 undefined on input line 3237. LaTeX Warning: Reference `subsec:align_bed' on page 123 undefined on input line 3237. (./_minted-Tutorial/6252059FEB1C539AB3AA84065D1AFE0A669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D1ECEEC0CDB23D95023740F189D293D6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/829F30DD660CB5F31B0BB2E8EF830166BD02851C2FB632864165FCA4920 46548.pygtex [123]) (./_minted-Tutorial/865853EFB9A9F2444191804BDD976FE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46D2E859D898B3FD9CDBF6F46910A518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61A566C18C28E8933ABF3876588877B8BD02851C2FB632864165FCA4920 46548.pygtex [124]) Overfull \hbox (20.18835pt too wide) in paragraph at lines 3330--3331 \OT1/cmr/m/n/10 The same ar-gu-ments can be used when writ-ing align-ments to a n out-put file in PSL for-mat us-ing [][]\OT1/cmtt/m/n/10 Bio.Align.write[]\OT1 /cmr/m/n/10 . (./_minted-Tutorial/B66E52A450DAB10C11EF0A5303F7F66EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/75A887FC47BD51521208CEC8CD530989BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_psl' on page 125 undefined on input line 3352. LaTeX Warning: Reference `subsec:align_bigbed' on page 125 undefined on input l ine 3354. LaTeX Warning: Reference `subsec:align_psl' on page 125 undefined on input line 3354. (./_minted-Tutorial/B3446A67A6D36BD7649B7DA288A73602BD02851C2FB632864165FCA4920 46548.pygtex [125]) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_psl' on page 126 undefined on input line 3410. (./_minted-Tutorial/EBC50F8A4A84EA141473F0B681CE103EBD02851C2FB632864165FCA4920 46548.pygtex [126]) (./_minted-Tutorial/8B79D88CC108A51F0F80C33707F28F17BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (30.38152pt too wide) in paragraph at lines 3454--3455 []\OT1/cmr/m/n/10 To write a big-Psl file with Biopy-thon, use [][]\OT1/cmtt/m/ n/10 Bio.Align.write(alignments, "myfilename.bb", fmt="bigpsl")[]\OT1/cmr/m/n/1 0 , LaTeX Warning: Reference `subsec:align_psl' on page 127 undefined on input line 3468. (./_minted-Tutorial/DB4A558C022A90213DAB447D381A2ECB669566ECC2CFEDC7429F829576A D0DC6.pygtex [127]) (./_minted-Tutorial/6A346D8618DC3432DE9566F9215CECE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/89A48A5075DC87C268A946A0C95240FABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex [128]) (./_minted-Tutorial/BDC663A31E94EAB00717271E001B32C9669566ECC2CFEDC7429F829576A D0DC6.pygtex [129]) (./_minted-Tutorial/97D9AC3C79900370497414083DEB2D76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F14B11D4C5AEFC47BBFC6FBF8352CC20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2115B439B9C7613ABE3C048C7F77E511BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (21.6891pt too wide) in paragraph at lines 3610--1 []\OT1/cmr/m/n/10 The "[][]\OT1/cmtt/m/n/10 q[]\OT1/cmr/m/n/10 " lines show the se-quence qual-ity, which is stored un-der the "[][]\OT1/cmtt/m/n/10 quality[] \OT1/cmr/m/n/10 " dic-tio-nary key of the[][]\OT1/cmtt/m/n/10 annotations ) (./_minted-Tutorial/DA5833B89F52A7B4A2B9B32D40B54EA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/452401475A94573BF37D7D123698A53CBD02851C2FB632864165FCA4920 46548.pygtex [130]) LaTeX Warning: Reference `sec:alignments' on page 131 undefined on input line 3 654. Overfull \hbox (1.04709pt too wide) in paragraph at lines 3654--3655 \OT1/cmr/m/n/10 To write a com-plete MAF file, use [][]\OT1/cmtt/m/n/10 Bio.Ali gn.write(alignments, "myfilename.maf", fmt="maf")[]\OT1/cmr/m/n/10 , where LaTeX Warning: Reference `subsec:align_bigmaf' on page 131 undefined on input l ine 3659. LaTeX Warning: Reference `subsec:align_maf' on page 131 undefined on input line 3662. (./_minted-Tutorial/4A087A9D83F47C007944C81E5F701759BD02851C2FB632864165FCA4920 46548.pygtex) [131] (./_minted-Tutorial/B2EBB3A8D801374C6400A39E9710C3E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_maf' on page 132 undefined on input line 3726. (./_minted-Tutorial/CEAA559B7186E2C8E02813D13980A48ABD02851C2FB632864165FCA4920 46548.pygtex [132]) LaTeX Warning: Reference `sec:alignments' on page 133 undefined on input line 3 775. Overfull \hbox (5.88144pt too wide) in paragraph at lines 3775--3776 []\OT1/cmr/m/n/10 To write a com-plete big-Maf file, use [][]\OT1/cmtt/m/n/10 B io.Align.write(alignments, "myfilename.bb", fmt="bigMaf")[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/96732D1FD6A8A472AD4BC4FB4E609A49BD02851C2FB632864165FCA4920 46548.pygtex [133]) (./_minted-Tutorial/92EE0FCB2E3CBC30A200F4F5FE5BEDBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9585E934C115EF3B41C1E16EAAFFA2B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/118275EA6694D0B766E9BD4F4D97FFF8BD02851C2FB632864165FCA4920 46548.pygtex [134]) (./_minted-Tutorial/20992EB20E2B00D18C30E5283B8F8620BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04A222C3764F8292CD85E13113B2E355BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF2CB3A0227D1D6D123733A23C3502FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/134808D506F7EBEDDC21AEFB8B1C1AD4BD02851C2FB632864165FCA4920 46548.pygtex [135])) [136] (./Tutorial/chapter_pairwise.tex Chapter 7. LaTeX Warning: Citation `durbin1998' on page 137 undefined on input line 10. (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 137 undefined on input line 23. (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAAB94B5EBAA776852055B38D072679EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59C4861F9CFA406680FB108F7638DB18BD02851C2FB632864165FCA4920 46548.pygtex [137]) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D01BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2422230E37F8F87089496D212F415650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7C1865F3A0AC01C199018850C2CBF24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76E331C5187C259B69198E91FC4AD112BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF7EA4D0E316F88B3A609CF62C6CD357BD02851C2FB632864165FCA4920 46548.pygtex [138]) (./_minted-Tutorial/A564D138D2F52B4E2858B9D14814966BBD02851C2FB632864165FCA4920 46548.pygtex) [139] (./_minted-Tutorial/B0937117DDA6BB67D133C99E550AD5BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [140]) LaTeX Warning: Citation `waterman1987' on page 141 undefined on input line 266. (./_minted-Tutorial/0A885050DEEEFE55D8800A555FD32426BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:pairwise-substitution-scores' on page 141 undefin ed on input line 298. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 141 undefined on input line 298. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 141 undefined on input line 298. LaTeX Warning: Reference `sec:pairwise-basic' on page 141 undefined on input li ne 299. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 141 undefined on input line 302. LaTeX Warning: Reference `sec:pairwise-general-gapscores' on page 141 undefined on input line 303. [141] (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `altschul1990' on page 142 undefined on input line 329. LaTeX Warning: Reference `sec:pairwise-affine-gapscores' on page 142 undefined on input line 329. (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `altschul1990' on page 142 undefined on input line 358. [142] (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: Reference `table:align-meta-attributes' on page 143 undefined on input line 462. Overfull \hbox (32.852pt too wide) in paragraph at lines 466--510 [][] (./_minted-Tutorial/DCCEE6D592009E7B8E7DE81563D8D4CEBD02851C2FB632864165FCA4920 46548.pygtex [143] [144] [145]) (./_minted-Tutorial/98D9A5E0CD47E306CA0DA2AFE878514ABD02851C2FB632864165FCA4920 46548.pygtex [146]) LaTeX Warning: Reference `sec:pairwise-examples' on page 147 undefined on input line 598. (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE1911BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C9DFA2EBF75572BAC340EC89D69B3D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB8671BD02851C2FB632864165FCA4920 46548.pygtex) [147] (./_minted-Tutorial/27E1D19EBBD5F4A0476AAC2BD7950A46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/ED55B2BAF04247D4F10E951590AA5077BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/BA096BCFB5777C90CA38AE388186DAA6BD02851C2FB632864165FCA4920 46548.pygtex [149]) (./_minted-Tutorial/9FF41FE72E025C3EC8E41470B268E105BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `durbin1998' on page 150 undefined on input line 783. (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034BBD02851C2FB632864165FCA4920 46548.pygtex [150]) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE06BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7323803F0E90CDA6FB16D10E868318BBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FBFC10402209A281F117C1A7C3D2057DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/88E3C6FE8CD1E52180656649B61F8CBBBD02851C2FB632864165FCA4920 46548.pygtex [151]) (./_minted-Tutorial/3352A1628AB7C0D638BB368952D0DEDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/842D73F66680850822D006857AE71FE7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2D6A808BF4EE516297A6B3C245DD911BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F18349AE10604FDE1CA7EB0C07144518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E4DBF912323F10D195B3AA3AEC63F53BD02851C2FB632864165FCA4920 46548.pygtex [152]) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5ADBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:pairwise' on page 153 undefined on input line 971. (./_minted-Tutorial/79A21B2A8F8F6AD65F6B1F3793D80A86BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6463A9B121897EB3CE22238D6527FE06BD02851C2FB632864165FCA4920 46548.pygtex [153]) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA825278BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFDD135A81C509EC7F35C141D2CAD51BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6126AB026498E1F63D451B1D4658AA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/902EEC7A1CB3027146D926159B4B460ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2BD903EAA6E97263AEFF453922CD6CD3BD02851C2FB632864165FCA4920 46548.pygtex [154]) (./_minted-Tutorial/0CFA6BD42F59D71E296FF2027BC6CC94BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:pairwise' on page 155 undefined on input line 1063. (./_minted-Tutorial/007A62C4B86AFB9385A7D86241664707BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9316B67A34DB9BF6C888C15D5F0F593BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:align_clustal' on page 155 undefined on input line 1083. (./_minted-Tutorial/9BA3947FA62C1EB757A2C26D0BF0AC4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBBB23BD87A1FCE1DBDC131052E5E921BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/957759CC14C7D6EB3A9289AC275F965FBD02851C2FB632864165FCA4920 46548.pygtex [155]) (./_minted-Tutorial/E342F3558CF8E1CEC0DA0A4E3B4A0159BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4FA358182F6BF8C8A2D01A4AB6C958DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (44.90923pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 Here, [][]\OT1/cmtt/m/n/10 background[:, None] []\OT1/cmr/m/n/1 0 cre-ates a 2D ar-ray con-sist-ing of a sin-gle col-umn with the val-ues of [] []\OT1/cmtt/m/n/10 expected_frequencies[]\OT1/cmr/m/n/10 , Overfull \hbox (13.77237pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 (in-ner prod-uct) cre-ates a ma-trix of ex-pected fre-quen-cies where each en-try con-sists of two [][]\OT1/cmtt/m/n/10 expected_frequencies Overfull \hbox (211.48245pt too wide) in paragraph at lines 1152--1153 []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1 /cmtt/m/n/10 expected_frequencies[^^MD^^M, ^^ME^^M] []\OT1/cmr/m/n/10 is equal to [][]\OT1/cmtt/m/n/10 residue_frequencies[^^MD^^M] * residue_frequencies[^^ME ^^M][]\OT1/cmr/m/n/10 . (./_minted-Tutorial/C9E8E52F2D57AA9166F02E5B946490F8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4CCE619EDA1B5136415DCBC81E02F94ABD02851C2FB632864165FCA4920 46548.pygtex [156]) LaTeX Warning: Reference `chapter:pairwise' on page 157 undefined on input line 1194. (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/659317FF2415828FBE0F4505ECB5B4E5BD02851C2FB632864165FCA4920 46548.pygtex [157]) (./_minted-Tutorial/60D893638743BD147116D13E00593D6CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `altschul1990' on page 158 undefined on input line 1248 . (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9AD9216297281F0858F16EA5C03B98AFBD02851C2FB632864165FCA4920 46548.pygtex [158]) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9EDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C42B04C08C3B07CABB6D2D7AE1F1B6DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `henikoff1992' on page 159 undefined on input line 1320 . LaTeX Warning: Citation `dayhoff1978' on page 159 undefined on input line 1320. (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/691C9A3D9A1EB52FAECF7E4C91F03BE9BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `schneider2005' on page 159 undefined on input line 134 5. (./_minted-Tutorial/9A7868CC2484B4CFB34F94E7549F2519BD02851C2FB632864165FCA4920 46548.pygtex [159]) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA77BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF796600BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 1380--1381 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C7134716BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/399250FB2BC395588B8004ACD928BE9CBD02851C2FB632864165FCA4920 46548.pygtex [160]) (./_minted-Tutorial/882BD2544386DECA236BF25C7DD64857BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FCA15B328DDB0383F97012E3C1FA70BD02851C2FB632864165FCA4920 46548.pygtex [161]) LaTeX Warning: Citation `schneider2005' on page 162 undefined on input line 149 3. LaTeX Warning: Reference `sec:substitution_matrices' on page 162 undefined on i nput line 1493. (./_minted-Tutorial/DA98355B1CF48169F9C82F2DD1F86A29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D646E6B49807044DBDC43707A09846BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/467CA50C36874E405E988587FEC07686BD02851C2FB632864165FCA4920 46548.pygtex [162]) (./_minted-Tutorial/E4398C5237FE7113BC5A8DE3B0E138A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E827958137C7E69DAEDB0C4151298E62BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A94C18D2207C354646F831D57FD85B35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/801A90831A5799E3FF1FC0A5E721F4F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D8BD02851C2FB632864165FCA4920 46548.pygtex [163]) (./_minted-Tutorial/0FE6E4AA3B9932059ECAAF000D2B335ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E006359914F4A2F87CC6BE376E4E5BB9BD02851C2FB632864165FCA4920 46548.pygtex [164]) (./_minted-Tutorial/E44672122CC05CB47AD10A19D652F781BD02851C2FB632864165FCA4920 46548.pygtex [165]) (./_minted-Tutorial/DF0F53F9E417CC5E3DE7A77007840AF7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0D981AA6FBDA65EF7598D9446CAD490BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:pairwise-aligner' on page 166 undefined on input line 1725. LaTeX Warning: Reference `table:align-meta-attributes' on page 166 undefined on input line 1726. LaTeX Warning: Reference `table:codonalign-meta-attributes' on page 166 undefin ed on input line 1726. (./_minted-Tutorial/170B41004F15599FA3468CE46E0C5585BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (33.84526pt too wide) in paragraph at lines 1725--1 [][]\OT1/cmtt/m/n/10 PairwiseAligner []\OT1/cmr/m/n/10 class de-scribed above ( see Sec-tion []). The val-ues spec-i-fied by the [][]\OT1/cmtt/m/n/10 frameshif t_minus_two_score[]\OT1/cmr/m/n/10 , [166]) (./_minted-Tutorial/9C680E660852DC23B54FAE3FACAE931CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BEDEB1E0209E6C09A0B1747245E6DA33BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (22.90215pt too wide) in paragraph at lines 1769--1 \OT1/cmr/m/n/10 This is due to a -1 frame shift event dur-ing trans-la-tion of the sec-ond nu-cleotide se-quence. Use [][]\OT1/cmtt/m/n/10 CodonAligner.align [167]) (./_minted-Tutorial/ED358F65899143A8C9C2BD533FBCB992BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DEE5ACDC4529864EB53E97C276F5529DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B42BF333D0818A27536BF9C3E60B86DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE6F9F5E53CD7E33BB3EB34479259508BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B5BC2DDE1D32E1F60B8EDEC763D06CBABD02851C2FB632864165FCA4920 46548.pygtex [168]) (./_minted-Tutorial/D74D5F09CEB9C29FD7B152A56BAC5CEABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/98DC2A4B7E45278A8B59A43E816DB897BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (11.49387pt too wide) in paragraph at lines 1909--1910 \OT1/cmr/m/n/10 tions per site (dN) and syn-ony-mous sub-sti-tu-tions per site (dS). These can be cal-cu-lated by the [][]\OT1/cmtt/m/n/10 calculate_dn_ds LaTeX Warning: Citation `nei1986' on page 169 undefined on input line 1911. LaTeX Warning: Citation `li1985' on page 169 undefined on input line 1912. [169] LaTeX Warning: Citation `yang2000' on page 170 undefined on input line 1913. LaTeX Warning: Citation `goldman1994' on page 170 undefined on input line 1914. (./_minted-Tutorial/60AFD6CEF624135FDFB352FB0261DE45BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/80F110C5D8FAD1898979F32619E5AB26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4DB4DC7F5A7830C22B1CDBAE4515CFCBD02851C2FB632864165FCA4920 46548.pygtex) [170] (./_minted-Tutorial/7B94E0EE4938A8FCA9BA75776BF6FBFABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B97288BF34F7AF5F3DB622A20FF46C98BD02851C2FB632864165FCA4920 46548.pygtex [171] [172])) [173] (./Tutorial/chapter_msa.tex Chapter 8. LaTeX Warning: Reference `sec:appendix-handles' on page 174 undefined on input line 33. LaTeX Warning: Reference `sec:AlignIO-count-argument' on page 174 undefined on input line 37. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF42669566ECC2CFEDC7429F829576A D0DC6.pygtex [174]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AECBD02851C2FB632864165FCA4920 46548.pygtex [175]) LaTeX Warning: Reference `sec:alignment-format' on page 176 undefined on input line 115. (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A31077BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F2669566ECC2CFEDC7429F829576A D0DC6.pygtex) [176] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C560407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD331669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B44533669566ECC2CFEDC7429F829576A D0DC6.pygtex [177]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF756BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE669566ECC2CFEDC7429F829576A D0DC6.pygtex) [178] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A14669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF020669566ECC2CFEDC7429F829576A D0DC6.pygtex [179]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C5669566ECC2CFEDC7429F829576A D0DC6.pygtex) [180] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D318BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A23714477669566ECC2CFEDC7429F829576A D0DC6.pygtex [181]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 436--437 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() LaTeX Warning: Reference `sec:SeqIO-conversion' on page 182 undefined on input line 446. Overfull \hbox (39.68698pt too wide) in paragraph at lines 444--449 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [182]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [183]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [184]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 185 undefined on input line 635. (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [185] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [186]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [187]) LaTeX Warning: Reference `sec:SeqRecord-addition' on page 188 undefined on inpu t line 815. (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [188] (./_minted-Tutorial/57CFE9DC5CD81FB0596F85897E6DA692BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:substitution_matrices' on page 189 undefined on i nput line 892. (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:msa' on page 189 undefined on input line 913. [189] (./_minted-Tutorial/13CFE6D1070039CAFDFF56DF04368770BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:consensus' on page 190 undefined on input line 92 4. LaTeX Warning: Reference `sec:pssm' on page 190 undefined on input line 925. LaTeX Warning: Reference `sec:getting_info_content' on page 190 undefined on in put line 926. LaTeX Warning: Reference `sec:substitution_matrices' on page 190 undefined on i nput line 927. LaTeX Warning: Reference `sec:summary_info' on page 190 undefined on input line 933. (./_minted-Tutorial/CD8C82261629F77671BA754C74700E87BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignmentobject' on page 190 undefined on input l ine 953. LaTeX Warning: Reference `sec:alignment_newstyle' on page 190 undefined on inpu t line 953. (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:motif_object' on page 190 undefined on input line 958. (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/584F58A1C6A85AF94480529177AA7D3FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:motif_consensus' on page 190 undefined on input l ine 970. (./_minted-Tutorial/B2B320FCB1CB4E31AB099291F932EB0BBD02851C2FB632864165FCA4920 46548.pygtex) [190] (./_minted-Tutorial/9D45F62EAC81CD13AAAF3450CF3A232ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/340D58639C2681751BEF2047783DEEE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F21E2E5C5DBD6EF9E6F640CC5F4C714BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72F8B65B0D3D88C3B10844472B106E41BD02851C2FB632864165FCA4920 46548.pygtex [191]) LaTeX Warning: Reference `sec:alignmentobject' on page 192 undefined on input l ine 1046. LaTeX Warning: Reference `sec:alignment_newstyle' on page 192 undefined on inpu t line 1046. (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:motif_object' on page 192 undefined on input line 1051. (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/58DE1694476DA2E216D59B45BB05C7C7BD02851C2FB632864165FCA4920 46548.pygtex) [192] LaTeX Warning: Reference `sec:summary_info' on page 193 undefined on input line 1101. (./_minted-Tutorial/421102D8AD818AF5ACDDF3088BC94F74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2E95BC5863623750A91BBE3F39CC619BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7036E919E25181C06CA4FE1AB45111CEBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignmentobject' on page 193 undefined on input l ine 1154. (./_minted-Tutorial/6E934A51665FDB7C86D79CF26E1D3355BD02851C2FB632864165FCA4920 46548.pygtex [193]) (./_minted-Tutorial/CC02B4199DEBDF02C873B29A4D23E2F8BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:alignio_clustal' on page 194 undefined on input l ine 1193. (./_minted-Tutorial/AA0C3D2760186CF61A1F541B6E07C05BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C0717BD02851C2FB632864165FCA4920 46548.pygtex [194]) (./_minted-Tutorial/01E13C07FE452CF1FDB6A6A35FDCA3C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E3EA69F3BBE8D7A4714A13459DD7618BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF976D90D5CFB8FBE1740CE553C3DE82BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1256--1257 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/666ED93D8D8EA6ECB692EA545A34C9BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex [195]) LaTeX Warning: Reference `chapter:pairwise' on page 196 undefined on input line 1298. LaTeX Warning: Reference `chapter:seqio' on page 196 undefined on input line 13 02. (./_minted-Tutorial/27194EF8B620D19B97A86FC4EBC01851BD02851C2FB632864165FCA4920 46548.pygtex) [196] (./_minted-Tutorial/5543453A39ABA62157B76DBB62BF3769BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex [197]) LaTeX Warning: Reference `chapter:phylo' on page 198 undefined on input line 14 21. (./_minted-Tutorial/DCCFE080F632390BC5C8A4A75BFBDD23BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8457D1842F832E12A9AD5EADD8062630BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex [198]) (./_minted-Tutorial/3BD4CBE24FA7DB3D645FBBF99722FA4F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9878C5723ABE83D5948A4EBBD103F2CA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5FE9E0DE95593B6491CC762F62613D36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/92EB98E95BD8980B6AE82598444E9F00BD02851C2FB632864165FCA4920 46548.pygtex [199])) [200] (./Tutorial/chapter_pairwise2.tex Chapter 9. LaTeX Warning: Reference `chapter:pairwise' on page 201 undefined on input line 4. (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/44E2C06C8661B128385CD75A7E7608AABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F120EF3444F3192D48657B4E52407017BD02851C2FB632864165FCA4920 46548.pygtex [201]) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F2091BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466DBD02851C2FB632864165FCA4920 46548.pygtex [202]) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C71BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75ABD02851C2FB632864165FCA4920 46548.pygtex)) [203] (./Tutorial/chapter_blast.tex Chapter 10. LaTeX Warning: Reference `chapter:searchio' on page 204 undefined on input line 18. Overfull \hbox (5.71313pt too wide) in paragraph at lines 43--44 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? CMD = Web & PAGE _ TYPE = BlastDocs & [204] (./_minted-Tutorial/A6D333F851BCB09A0C02030C1BC37AB1BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 205 undefined on input lin e 71. (./_minted-Tutorial/69F91830197D9990EA9A0BD7D074EE21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4EBD02851C2FB632864165FCA4920 46548.pygtex [205]) LaTeX Warning: Reference `chapter:seqio' on page 206 undefined on input line 13 1. LaTeX Warning: Reference `sec:parsing-blast' on page 206 undefined on input lin e 136. (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC6BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 206 undefined on input lin e 158. (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 206 undefined on input lin e 167. LaTeX Warning: Reference `sec:running-www-blast' on page 206 undefined on input line 176. [206] LaTeX Warning: Reference `sec:alignment-tools' on page 207 undefined on input l ine 204. (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/88BD5D9B190061FD4FD34D2573EE4792BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:parsing-blast' on page 207 undefined on input lin e 239. [207] LaTeX Warning: Reference `sec:running-www-blast' on page 208 undefined on input line 285. LaTeX Warning: Reference `sec:running-local-blast' on page 208 undefined on inp ut line 287. LaTeX Warning: Reference `sec:appendix-handles' on page 208 undefined on input line 302. (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE5218004BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 208 undefined on input line 33 8. LaTeX Warning: Reference `chapter:align' on page 208 undefined on input line 33 8. (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F40394BD02851C2FB632864165FCA4920 46548.pygtex [208]) (./_minted-Tutorial/A614B982013DB6EC38FCADD82303A8BEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68259DF5B1930070C029D5A72D891A36BD02851C2FB632864165FCA4920 46548.pygtex [209]) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B1924669566ECC2CFEDC7429F829576A D0DC6.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:blastrecord' on page 210 undefined on input line 461. LaTeX Warning: Reference `fig:psiblastrecord' on page 210 undefined on input li ne 461. LaTeX Warning: Float too large for page by 32.27644pt on input line 476. ) [210] [211 <./images/BlastRecord.png>] [212 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 11. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [213] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [214]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [215]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [216]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [217] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [218]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [219]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [220] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [221] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [222]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seq_annot' on page 223 undefined on input lin e 739. Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [223]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [224]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [225]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [226] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [227] LaTeX Warning: Reference `sec:SeqIO-index' on page 228 undefined on input line 1089. Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [228] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [229] (./Tutorial/chapter_entrez.tex Chapter 12. [230] LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 231 undefined on input line 21. (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB5BD02851C2FB632864165FCA4920 46548.pygtex [231]) LaTeX Warning: Reference `sec:entrez-webenv' on page 232 undefined on input lin e 60. LaTeX Warning: Reference `sec:BioSQL' on page 232 undefined on input line 63. (./_minted-Tutorial/BE69E60966963418560089D2DFFA721BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA36BD02851C2FB632864165FCA4920 46548.pygtex [232]) (./_minted-Tutorial/90EE68BD33BA5A5CDDC15A58DE3769DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C008BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474B6317DE32E44C65767FFD4D132892BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F6BD02851C2FB632864165FCA4920 46548.pygtex [233]) (./_minted-Tutorial/570A44C26E360300ABEECACE7E48FE7BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C68BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:efetch' on page 234 undefined on input line 216. LaTeX Warning: Reference `sec:entrez-einfo' on page 234 undefined on input line 220. (./_minted-Tutorial/4E8F788B5B01D8C8A4DBF9235CB05362BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:efetch' on page 234 undefined on input line 236. [234] (./_minted-Tutorial/00763064983507F32B88C306DFA40494BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53F668B0CE9069489F6D35B114D072B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/49E5F2A1DFC2444E5A673AD6C6E3F19FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 235 undefined on input lin e 299. [235] (./_minted-Tutorial/46751534B93778AB6E7EE90ACA2EC1DEBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 236 undefined on in put line 325. LaTeX Warning: Reference `sec:efetch' on page 236 undefined on input line 325. (./_minted-Tutorial/C50C3FBF7BB51714D959B2E35A15830FBD02851C2FB632864165FCA4920 46548.pygtex [236] [237]) LaTeX Warning: Reference `chapter:seqio' on page 238 undefined on input line 41 9. (./_minted-Tutorial/90B50EB67F311E9802115D3378F7F3A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4D148476913E81D469C49EC2ED2E4269543DFECA235A69AE23006BA05B 4EB70.pygtex [238]) (./_minted-Tutorial/7BEF78A395312D4138ADAAED85869FE8BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-specialized-parsers' on page 239 undefined on input line 479. LaTeX Warning: Reference `sec:entrez-webenv' on page 239 undefined on input lin e 481. (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF008BD02851C2FB632864165FCA4920 46548.pygtex [239]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68622353B578A611D2F621023E3C4BD1BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:elink-citations' on page 240 undefined on input l ine 563. LaTeX Warning: Reference `sec:entrez_example_genbank' on page 240 undefined on input line 569. (./_minted-Tutorial/D3C77609B61D3F46B793852609D1E4A1BD02851C2FB632864165FCA4920 46548.pygtex [240]) (./_minted-Tutorial/01E1B282D67C006BF30065A545EABFB4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E0944BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E0DB204F613774290A8485A084337CECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A760ECBEB3B2FD29A53BCA5D183DAFFCBD02851C2FB632864165FCA4920 46548.pygtex [241]) (./_minted-Tutorial/0E5336FE7E3A88121498608010025EF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF38669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E71669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4E46E525923D539FE28933C22912C4F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB86669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C20FD6887ACA76A3A6BB41D0F8D1E49CBD02851C2FB632864165FCA4920 46548.pygtex [242]) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5A768DAE26A5087A2B94A01E741705DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B669566ECC2CFEDC7429F829576A D0DC6.pygtex [243]) (./_minted-Tutorial/D6F6C0600C1A353DC53F7C5053F21845BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/42D56AFB832DDE5E3731A1DA56712385BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EF35C66998219AA15568E5FA366261EBD02851C2FB632864165FCA4920 46548.pygtex [244]) (./_minted-Tutorial/CD3676C48A9629929A55320028B512E5BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 245 undefined on in put line 823. LaTeX Warning: Reference `sec:efetch' on page 245 undefined on input line 823. (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD669566ECC2CFEDC7429F829576A D0DC6.pygtex [245]) (./_minted-Tutorial/BA0AB018AAD76A735A66112724779B6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/265BCBE09451F85D4BB86E81E6F3D4E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/444791288FF5BDC5902CCB9784A155F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B09039A2D5E19CEC9E137775753247BBBD02851C2FB632864165FCA4920 46548.pygtex [246]) (./_minted-Tutorial/8A37ACED6410F897928FCB7C50949E76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E8409E14FB2D552933B09043928680F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD7F3CF796C1A867CB155C96F23EEF1BBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 247 undefined on input lin e 945. (./_minted-Tutorial/A31A48992D09DD96D61522A7043B6CD3BD02851C2FB632864165FCA4920 46548.pygtex [247]) (./_minted-Tutorial/2A4C90292B912D4CC89B37352989263BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F2019669566ECC2CFEDC7429F829576A D0DC6.pygtex [248]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/67F7BC27D166185C4B7B9A9F270ACDA5BD02851C2FB632864165FCA4920 46548.pygtex [249]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA19543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:orchids' on page 250 undefined on input line 1115 . (./_minted-Tutorial/DB935BA8B2CE7FC7C166E4B75EBE6265BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/291147B743C75A3F4B2DE070CFA1B2D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71ABD02851C2FB632864165FCA4920 46548.pygtex) [250] (./_minted-Tutorial/18B8A1741AF884D30B8BE92DFD650BAEBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 251 undefined on input lin e 1158. (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD0BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:orchids' on page 251 undefined on input line 1204 . [251] (./_minted-Tutorial/50F11612D2ABC00C1DFEDBD9AAF8BB3BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CC25FFF338C00383DCB063570D88219BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B642038BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A0BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 252 undefined on input lin e 1259. (./_minted-Tutorial/C29234A01846A769E0662D844733154DBD02851C2FB632864165FCA4920 46548.pygtex [252]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A1BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 253 undefined on input lin e 1294. LaTeX Warning: Reference `sec:SeqIO_GenBank_Online' on page 253 undefined on in put line 1301. LaTeX Warning: Reference `sec:entrez-webenv' on page 253 undefined on input lin e 1302. (./_minted-Tutorial/83AF94F97D8DB6C14498938D53D9F761BD02851C2FB632864165FCA4920 46548.pygtex [253]) (./_minted-Tutorial/F84312826D2E2BBFA3208F42493E2349BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0918D05D7A12068693442FD750C7FA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A10F5BBA5C9ACB9164926A93053C9077BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:seqio' on page 254 undefined on input line 13 54. (./_minted-Tutorial/0E45AACFBE1E2FA38805A72A89828A00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D76169664531538D144C55FFC33571BBD02851C2FB632864165FCA4920 46548.pygtex [254]) LaTeX Warning: Reference `sec:entrez-guidelines' on page 255 undefined on input line 1378. LaTeX Warning: Reference `sec:entrez-webenv' on page 255 undefined on input lin e 1379. (./_minted-Tutorial/FD60404C05CBEF7AE40C25F2F0EC251FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8322E0DFB7ADD0CF84E8BD23054A83B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB93649BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D8BD02851C2FB632864165FCA4920 46548.pygtex) [255] LaTeX Warning: Reference `sec:entrez-search-fetch-genbank' on page 256 undefine d on input line 1439. (./_minted-Tutorial/FA6B767638A94C23AD0E7E718EA9F2B0BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez_example_genbank' on page 256 undefined on input line 1461. (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F9633BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AA72E956B557A0745C07301394654629543DFECA235A69AE23006BA05B 4EB70.pygtex [256]) (./_minted-Tutorial/96CF6391E5068D8E84EDAEEE6F6DB70A9543DFECA235A69AE23006BA05B 4EB70.pygtex [257]) LaTeX Warning: Reference `sec:entrez-and-medline' on page 258 undefined on inpu t line 1550. LaTeX Warning: Reference `sec:elink' on page 258 undefined on input line 1555. (./_minted-Tutorial/43EC7DBFBCAE4E8B197BA170F7FE7CB2BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:entrez-webenv' on page 258 undefined on input lin e 1580. (./_minted-Tutorial/5F55F80E3D84EDCE0B63B5BCEC4E927ABD02851C2FB632864165FCA4920 46548.pygtex)) [258] (./Tutorial/chapter_uniprot.tex Chapter 13. LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 259 undefined on input line 12. (./_minted-Tutorial/9F44B6472AF40E72394F44F9065D3E49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A668BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD6768BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:expasy_swissprot' on page 259 undefined on input line 38. (./_minted-Tutorial/6F95F555D5FF56504BCE05FDB71E3767BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO_ExPASy_and_SwissProt' on page 259 undefined on input line 46. [259] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA6519182BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB52ADBD7A08C2F90E5BB486EDFA1FF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD69228BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D14BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C06BD02851C2FB632864165FCA4920 46548.pygtex [260]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A4517918BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09ABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF25628224669566ECC2CFEDC7429F829576A D0DC6.pygtex [261]) (./_minted-Tutorial/956383F4066B9E093C9D2E3843CA0220BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307BBD02851C2FB632864165FCA4920 46548.pygtex [262]) (./_minted-Tutorial/9AB12EEC55BEE868B932EF7EF12109CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B669566ECC2CFEDC7429F829576A D0DC6.pygtex [263]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC783BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF9BD02851C2FB632864165FCA4920 46548.pygtex) [264] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:orchids' on page 265 undefined on input line 343. (./_minted-Tutorial/20DD2D91201FBA08EE81FE73D557B622BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 363--364 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/30A3D5D1EA4F73DD0984EDFDDAF9090CBD02851C2FB632864165FCA4920 46548.pygtex [265]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 407--408 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E59BD02851C2FB632864165FCA4920 46548.pygtex [266]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A8669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/64ACD8E8EC2C5F323A9D84639080EBCBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0947A460CB4FBD78843CCF1E91E5FAA2BD02851C2FB632864165FCA4920 46548.pygtex [267]) (./_minted-Tutorial/4D3A0EF15DB535907DD377ECFBD51879BD02851C2FB632864165FCA4920 46548.pygtex)) [268] (./Tutorial/chapter_pdb.tex Chapter 14. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C22853BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E69085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C71BD02851C2FB632864165FCA4920 46548.pygtex [269]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA7388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A7F199DA98E2BD66B92177EFD14AA59ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB8231BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:problem_structures' on page 270 undefined on inpu t line 84. (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879EBD02851C2FB632864165FCA4920 46548.pygtex) [270] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D176BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A5BD02851C2FB632864165FCA4920 46548.pygtex) [271] (./_minted-Tutorial/684AC0ECE33D6BA84F0409CE669AB136BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA4BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.022pt too wide) in paragraph at lines 262--264 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) [272] LaTeX Warning: Reference `fig:smcra' on page 273 undefined on input line 275. LaTeX Warning: Reference `sec:problem_structures' on page 273 undefined on inpu t line 284. Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D979BD02851C2FB632864165FCA4920 46548.pygtex) [273] [274 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB247BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E2727622BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A12BD02851C2FB632864165FCA4920 46548.pygtex) [275] LaTeX Warning: Reference `sec:hetero_problems' on page 276 undefined on input l ine 421. (./_minted-Tutorial/8A579A2F82E38AFC725C7AD02B2F5D57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E3BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:point_mutations' on page 276 undefined on input l ine 466. (./_minted-Tutorial/38F92E91F7EF83579513DC2A23D231DCBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:disordered_atoms' on page 276 undefined on input line 483. [276] (./_minted-Tutorial/35E34E333445AAAA4E33570211335BA5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2470AECC1DA459F7A1ACC68FCD911B1BD02851C2FB632864165FCA4920 46548.pygtex [277]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC88098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB12492BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `fig:smcra' on page 278 undefined on input line 610. (./_minted-Tutorial/76657140082404C594EE786B642215C3BD02851C2FB632864165FCA4920 46548.pygtex [278]) LaTeX Warning: Reference `fig:smcra' on page 279 undefined on input line 657. (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254CBD02851C2FB632864165FCA4920 46548.pygtex) [279] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B128BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B3BD02851C2FB632864165FCA4920 46548.pygtex [280]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF231899BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0B35B80BBDE5AE1373CAE9105C01A624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC2663BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA39BD02851C2FB632864165FCA4920 46548.pygtex [281]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E667BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/866FA21894DE0E73CE09F7F50E59FDC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2CF9B1EBC15ECA1536AFA86FAF01899BBD02851C2FB632864165FCA4920 46548.pygtex [282]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE729029ED6ABA2E38F17FAA1C60732CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8BB12A44CF293B1BF656E236EFE0BE12BD02851C2FB632864165FCA4920 46548.pygtex [283]) (./_minted-Tutorial/F0EFB999D116D041397B95C62B2EED29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FE5531F727D4D28736FC18DF8A430EBBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E045C9432637E8C515E37CB4917FD57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD9DB5C434FCB2537E43EF340112BD08BD02851C2FB632864165FCA4920 46548.pygtex [284]) (./_minted-Tutorial/C1D5880B46A9CAEDCEB7F545F21B98CBBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.2397pt too wide) in paragraph at lines 1070--1074 \OT1/cmr/m/n/10 Missing atoms and other is-sues can cause prob-lems when re-bui ld-ing a struc-ture. Use \OT1/cmtt/m/n/10 structure[]rebuild[]test$$ (./_minted-Tutorial/BD4323A41DFED2A7E4CD261AA65F95EDBD02851C2FB632864165FCA4920 46548.pygtex) [285] (./_minted-Tutorial/6395F38A139598C6CC297CDBA73A8A43BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D2C13C2AA9395E0B1E4F1DDC801798BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12E711A2CBFD0B046AA026208A117C1E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/813FE78A3F8D8E46F06FF71539F000E69543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/CD78F368EB103F71947A3184BB62B46F9543DFECA235A69AE23006BA05B 4EB70.pygtex [286]) (./_minted-Tutorial/8E34478E945971E05C77F0A0E8C1B9D89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0D3FBB23D21A6A468370D56058193010BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBA5405CCC4A3178ADA49DA358246C819543DFECA235A69AE23006BA05B 4EB70.pygtex [287]) (./_minted-Tutorial/DE601B1883F045FBEE1B28168CFF0CCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD606A07E346D24D5D31174E036406399543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `fig:distanceplot' on page 288 undefined on input line 1262. (./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [288 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1293--1296 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1293--1296 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . (./_minted-Tutorial/BACD9263B6DB9FE9B9C8FA59C017D190BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2AECB4AED1E5DFDC387B42EF509CC3F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D3E5D8C6C6880A4C1D7DC0DEE7DC0C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/815743EBD76EB14B6A71E1A4AE6433A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B285099D410967E19F3165C7B5395544BD02851C2FB632864165FCA4920 46548.pygtex [289]) LaTeX Warning: Reference `fig:phepairs' on page 290 undefined on input line 138 4. Excluding 'htmlonly' comment. (./_minted-Tutorial/5DFAFA7DE84292336F50FFB5DD8AD22A9543DFECA235A69AE23006BA05B 4EB70.pygtex [290 <./images/phe-pairs-3pbl.png>]) (./_minted-Tutorial/ED5201F27B6F2CC7A881AC419DF87B5E9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `table:ic-attribs' on page 291 undefined on input line 1456. Overfull \hbox (214.06847pt too wide) in paragraph at lines 1459--1475 [][] [291] LaTeX Warning: Citation `golub1989' on page 292 undefined on input line 1497. (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `hamelryck2005' on page 292 undefined on input line 152 5. (./_minted-Tutorial/10BEDFA26FE20B8B11FC832131C1705EBD02851C2FB632864165FCA4920 46548.pygtex [292]) LaTeX Warning: Reference `table:DSSP-codes' on page 293 undefined on input line 1560. LaTeX Warning: Reference `sec:residue_depth' on page 293 undefined on input lin e 1600. (./_minted-Tutorial/12DBC9D94FB0B4B78A481C6C111C6709BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/895E3343902EFB0E5475667B01C4B691BD02851C2FB632864165FCA4920 46548.pygtex [293]) LaTeX Warning: Citation `hamelryck2003a' on page 294 undefined on input line 16 51. [294] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A9BD02851C2FB632864165FCA4920 46548.pygtex [295]) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5DBD02851C2FB632864165FCA4920 46548.pygtex) [296] LaTeX Warning: Citation `hamelryck2003b' on page 297 undefined on input line 18 62. LaTeX Warning: Citation `majumdar2005' on page 297 undefined on input line 1863 . ) [297] (./Tutorial/chapter_popgen.tex Chapter 15. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/331BEE386F268F55DE217F54E27EAB6B9543DFECA235A69AE23006BA05B 4EB70.pygtex) [298] (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [299] (./Tutorial/chapter_phylo.tex Chapter 16. LaTeX Warning: Citation `talevich2012' on page 300 undefined on input line 9. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC5671669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE15844BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4ADBD02851C2FB632864165FCA4920 46548.pygtex [300]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6621A01BB423374C8FC608E267D0EA7DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-simple-draw' on page 301 undefined on input line 118. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [301] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 183--186 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [302 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-color-draw' on page 303 undefined on input line 220. (./_minted-Tutorial/D713148814BA75DCDEB1C77B12674D9BBD02851C2FB632864165FCA4920 46548.pygtex [303 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/69333D76AA5D97D8BF9E95DEECEEE2B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/456F5679DCD4FF740E7A110889D86573BD02851C2FB632864165FCA4920 46548.pygtex [304]) (./_minted-Tutorial/2B3BFA62F3A778E4818959ED3E8AD3EEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A1E441205EAE188E6F4319753E3982D3BD02851C2FB632864165FCA4920 46548.pygtex [305]) (./_minted-Tutorial/C3E382424C6F17EF8DB95D08D8AC9FEEBD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:phylo-draw-example' on page 306 undefined on inpu t line 415. [306 <./images/phylo-draw-example.png>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 481--488 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [307] Overfull \hbox (13.48741pt too wide) in paragraph at lines 536--539 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [308] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [309] Overfull \hbox (15.04868pt too wide) in paragraph at lines 705--709 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . (./_minted-Tutorial/20AACD5E58630D4B64529F3A1ACD8119BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EB4CA3626331FD00CE50FECC3590095BBD02851C2FB632864165FCA4920 46548.pygtex) [310] (./_minted-Tutorial/0702C9875263768417DD3ED2EF78755EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D2BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:PhyloXML' on page 311 undefined on input line 825 . [311]) [312] (./Tutorial/chapter_motifs.tex Chapter 17. LaTeX Warning: Reference `sec:links' on page 313 undefined on input line 8. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AB934E1AD357BE20BA1F223A29AE486ABD02851C2FB632864165FCA4920 46548.pygtex [313]) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FD74672EB5AFA6884F8D499FED8275BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5192D61C78C1A3C85C526E8A343B2D1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/780058F0AF2BD1667406082AF62B622BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1AA6C485CC966DC35852E2E56CB690CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/114CF431D502A1771C56B9B94DC877C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/24FEE45DD1241EADADB4B18D6AD262D2BD02851C2FB632864165FCA4920 46548.pygtex [314]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F61243192022BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `cornish1985' on page 315 undefined on input line 171. LaTeX Warning: Citation `cavener1987' on page 315 undefined on input line 172. [315] (./_minted-Tutorial/9E99895E29C3369AC7D546CE91F1E814BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/558D14A34910CE0F1CE14AC8AB8674D1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CADD201D618F08B90493FFBD7C160BD1BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `schneider1986' on page 316 undefined on input line 234 . LaTeX Warning: Citation `durbin1998' on page 316 undefined on input line 234. [316] (./_minted-Tutorial/09688621FC642BD071CE8B14DE593BDABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B6055E3EDC34B64895539DAABF61813BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB2476BD02851C2FB632864165FCA4920 46548.pygtex) [317] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C6BD02851C2FB632864165FCA4920 46548.pygtex [318]) (./_minted-Tutorial/15622530AF3C0273D3804ACCBDE86922BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D14669566ECC2CFEDC7429F829576A D0DC6.pygtex [319]) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA693ACE906F3FCF6D9B4DB2D841E650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF92669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4910FFD3FDCDF743F7F37BE10B04F706BD02851C2FB632864165FCA4920 46548.pygtex [320]) (./_minted-Tutorial/AF4CF0FDC0B4EBF46401E9953A293EF5BD02851C2FB632864165FCA4920 46548.pygtex [321]) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FDBD02851C2FB632864165FCA4920 46548.pygtex [322]) (./_minted-Tutorial/46FF514D13E6C4030C26EC4EFF8CFAFDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AEBD02851C2FB632864165FCA4920 46548.pygtex) [323] (./_minted-Tutorial/47B231A79951117DFE8D7B369F5A0EDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C378BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7EDF217AC860547FAAC456716F6D6BBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `bailey1994' on page 324 undefined on input line 631. (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F8669566ECC2CFEDC7429F829576A D0DC6.pygtex [324]) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E44669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909FBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 692--695 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B84BD02851C2FB632864165FCA4920 46548.pygtex [325]) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37411E4F0C2364A16573A917D3E3918DBD02851C2FB632864165FCA4920 46548.pygtex [326]) LaTeX Warning: Citation `matys2003' on page 327 undefined on input line 777. (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA7669566ECC2CFEDC7429F829576A D0DC6.pygtex [327]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4293959D98D2DC2DC0CE6CA72DFD5D5CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `table:transfaccodes' on page 328 undefined on input l ine 861. LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EFBD02851C2FB632864165FCA4920 46548.pygtex [328] [329]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F26406BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA782BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE0BD02851C2FB632864165FCA4920 46548.pygtex [330]) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EBBD02851C2FB632864165FCA4920 46548.pygtex [331]) (./_minted-Tutorial/5CBFAEFFA194A41048B5DAFCF4C98812BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E225BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EABD02851C2FB632864165FCA4920 46548.pygtex [332]) (./_minted-Tutorial/6E38B20582EF8FBF09C0864F13C6172DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7BBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `subsec:relative_entropy' on page 333 undefined on inp ut line 1192. (./_minted-Tutorial/CEF4EF7AD2559AA1A840E9E5F4F1E33EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D1D6AE9E3598EC28091C3C92ADBF6891BD02851C2FB632864165FCA4920 46548.pygtex [333]) (./_minted-Tutorial/FAE6232F395C5C5C9B45609DB98ABE96BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA161BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E25BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A5092BD02851C2FB632864165FCA4920 46548.pygtex [334]) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C86073BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE970BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF4BD02851C2FB632864165FCA4920 46548.pygtex [335]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E322BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C9BD02851C2FB632864165FCA4920 46548.pygtex [336]) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD7261603BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA2473BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21BBD02851C2FB632864165FCA4920 46548.pygtex [337]) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA16BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/868ABF9ABD2736A12F423306646D7706BD02851C2FB632864165FCA4920 46548.pygtex [338]) (./_minted-Tutorial/912C817861E626118AB2FA06F12910B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F4472669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB41BD02851C2FB632864165FCA4920 46548.pygtex [339]) (./_minted-Tutorial/19ABF38625E3814B04BE6103C2AC4E6ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E422EFFCDD59E6EF6FB3B86E29D8F0B7BD02851C2FB632864165FCA4920 46548.pygtex)) [340] (./Tutorial/chapter_cluster.tex Chapter 18. LaTeX Warning: Citation `dehoon2004' on page 341 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 341 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 341 undefined on input line 30. [341] [342] [343] LaTeX Warning: Citation `snedecor1989' on page 344 undefined on input line 154. [344] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 345 undefined on input line 183. (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [345]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [346] LaTeX Warning: Reference `sec:distancefunctions' on page 347 undefined on input line 278. [347] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [348] LaTeX Warning: Reference `sec:distancefunctions' on page 349 undefined on input line 346. (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [349] [350] LaTeX Warning: Citation `sibson1973' on page 351 undefined on input line 413. Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C239049267861739BD02851C2FB632864165FCA4920 46548.pygtex) [351] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE22BD02851C2FB632864165FCA4920 46548.pygtex) [352] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D41BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF8895055BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 353 undefined on input line 556. (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEBBD02851C2FB632864165FCA4920 46548.pygtex [353]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Citation `kohonen1997' on page 354 undefined on input line 600. LaTeX Warning: Citation `tamayo1999' on page 354 undefined on input line 600. [354] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C175BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 355 undefined on input line 647. [355] Overfull \hbox (106.77225pt too wide) in paragraph at lines 654--656 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ LaTeX Warning: Citation `yeung2001' on page 356 undefined on input line 660. LaTeX Warning: Citation `golub1971' on page 356 undefined on input line 668. (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEABD02851C2FB632864165FCA4920 46548.pygtex) [356] LaTeX Warning: Citation `eisen1998' on page 357 undefined on input line 690. LaTeX Warning: Citation `saldanha2004' on page 357 undefined on input line 690. (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8D3928D79091BFFA7AFB6D6F35A52C7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4D59CC328F454A26A4BE9F91740D961CBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.39864pt too wide) in paragraph at lines 739--750 [] [357] [358] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F7BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 359 undefined on input line 802. LaTeX Warning: Reference `sec:distancematrix' on page 359 undefined on input li ne 805. (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAFBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:clustercentroids' on page 359 undefined on input line 823. (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FCBD02851C2FB632864165FCA4920 46548.pygtex) [359] LaTeX Warning: Reference `sec:distancefunctions' on page 360 undefined on input line 846. (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 360 undefined on input line 871. (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E0BD02851C2FB632864165FCA4920 46548.pygtex [360]) LaTeX Warning: Reference `sec:distancefunctions' on page 361 undefined on input line 900. (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA8504BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 361 undefined on input line 922. [361] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `hihara2001' on page 362 undefined on input line 954. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [362]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--119 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [363] (./Tutorial/chapter_graphics.tex Chapter 19. LaTeX Warning: Citation `pritchard2006' on page 364 undefined on input line 18. LaTeX Warning: Citation `toth2006' on page 364 undefined on input line 28. LaTeX Warning: Citation `vanderauwera2009' on page 364 undefined on input line 31. LaTeX Warning: Reference `chapter:seq_annot' on page 364 undefined on input lin e 36. LaTeX Warning: Reference `chapter:seqio' on page 364 undefined on input line 36 . [364] LaTeX Warning: Reference `chapter:seqio' on page 365 undefined on input line 64 . (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A09543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D8169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B0359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear' on page 365 undefined on input li ne 136. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA79543DFECA235A69AE23006BA05B 4EB70.pygtex [365]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_circular' on page 366 undefined on input line 167. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E9543DFECA235A69AE23006BA05B 4EB70.pygtex [366 <./images/plasmid_linear.png (PNG copy)>]) LaTeX Warning: Reference `sec:seq_features' on page 367 undefined on input line 220. [367 <./images/plasmid_circular.png (PNG copy)>] (./_minted-Tutorial/ECF4549C3ED9BED5D89616D96689FF279543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F6FC21242AEF7E7CBB38249DA932A7359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 368 undefined on input l ine 260. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D8509543DFECA235A69AE23006BA05B 4EB70.pygtex [368]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_labels' on page 369 undefined on input l ine 329. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 369 unde fined on input line 338. LaTeX Warning: Reference `sec:gd_feature_captions' on page 369 undefined on inp ut line 338. LaTeX Warning: Reference `sec:gd_features_without_seqfeatures' on page 369 unde fined on input line 338. LaTeX Warning: Reference `sec:gd_feature_captions' on page 369 undefined on inp ut line 338. LaTeX Warning: Reference `sec:gd_nice_example' on page 369 undefined on input l ine 344. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B949543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C9543DFECA235A69AE23006BA05B 4EB70.pygtex [369] [370 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigils' on page 371 undefined on input line 38 7. Excluding 'htmlonly' comment. LaTeX Warning: Reference `sec:gd_sigils' on page 371 undefined on input line 40 3. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_shafts' on page 371 undefined on i nput line 434. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 371 undefined on input l ine 439. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:gd_sigil_arrow_heads' on page 371 undefined on in put line 463. LaTeX Warning: Reference `sec:gd_arrow_sigils' on page 371 undefined on input l ine 468. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:gd_top_down' on page 371 undefined on input line 488. (./_minted-Tutorial/67B3F646AA5F8690151428081229D39B9543DFECA235A69AE23006BA05B 4EB70.pygtex [371] [372 <./images/GD_sigils.png>] [373 <./images/GD_sigil_arrow _shafts.png>] [374 <./images/GD_sigil_arrow_heads.png>] [375]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:plasmid_linear_nice' on page 376 undefined on inp ut line 570. LaTeX Warning: Reference `fig:plasmid_circular_nice' on page 376 undefined on i nput line 571. LaTeX Warning: Reference `sec:gd_nice_example' on page 376 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 376 undefined on input l ine 577. LaTeX Warning: Reference `sec:gd_nice_example' on page 376 undefined on input l ine 585. LaTeX Warning: Reference `sec:gd_nice_example' on page 376 undefined on input l ine 585. LaTeX Warning: Citation `proux2002' on page 376 undefined on input line 596. LaTeX Warning: Reference `sec:efetch' on page 376 undefined on input line 605. LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 376 undefined on input line 608. LaTeX Warning: Reference `sec:SeqRecord-reverse-complement' on page 376 undefin ed on input line 610. [376 <./images/plasmid_linear_nice.png (PNG copy)>] [377 <./images/plasmid_circ ular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA899543DFECA235A69AE23006BA05B 4EB70.pygtex [378]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A9543DFECA235A69AE23006BA05B 4EB70.pygtex [379]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_simple' on page 380 undefined on inpu t line 732. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 380 undefined on inpu t line 739. LaTeX Warning: Reference `sec:gd_multiple_tracks' on page 380 undefined on inpu t line 739. LaTeX Warning: Citation `proux2002' on page 380 undefined on input line 759. (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex [380 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex [381]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 382 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 382 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 382 undefined on input li ne 901. Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl2' on page 382 undefined on input l ine 927. LaTeX Warning: Reference `sec:gd_cross_links' on page 382 undefined on input li ne 934. LaTeX Warning: Reference `sec:gd_cross_links' on page 382 undefined on input li ne 934. [382] [383 <./images/three_track_cl.png>] [384 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F7284149779543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Citation `jupe2012' on page 385 undefined on input line 1012. (./_minted-Tutorial/362E20D07B620886BB870C2BA76C6D809543DFECA235A69AE23006BA05B 4EB70.pygtex [385] [386 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C9543DFECA235A69AE23006BA05B 4EB70.pygtex [387]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 388 undefined on input line 1114. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A759543DFECA235A69AE23006BA05B 4EB70.pygtex [388]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:simplechromosome' on page 389 undefined on input line 1194. ) [389] (./Tutorial/chapter_kegg.tex Chapter 20. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C71BD02851C2FB632864165FCA4920 46548.pygtex) [390] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B9543DFECA235A69AE23006BA05B 4EB70.pygtex [391]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C95669566ECC2CFEDC7429F829576A D0DC6.pygtex)) [392] (./Tutorial/chapter_phenotype.tex Chapter 21. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8DBD02851C2FB632864165FCA4920 46548.pygtex) [393] (./_minted-Tutorial/1742F69ECDDF3F5D15E6B5DBFEFA9721BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB44BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB081BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDF372B652AEF5EA570E28DA8244BF8BD02851C2FB632864165FCA4920 46548.pygtex [394]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D7206BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579DBD02851C2FB632864165FCA4920 46548.pygtex [395]) (./_minted-Tutorial/AEDB3BBBBA5C2503EDA86617E0872188BD02851C2FB632864165FCA4920 46548.pygtex [396]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E6BD02851C2FB632864165FCA4920 46548.pygtex)) [397] (./Tutorial/chapter_cookbook.tex Chapter 22. LaTeX Warning: Reference `chapter:seqio' on page 398 undefined on input line 22 . (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB9543DFECA235A69AE23006BA05B 4EB70.pygtex [398]) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 399 undefined on i nput line 58. (./_minted-Tutorial/CA0835D76EF6887731674D8AB555091B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E57164BD02851C2FB632864165FCA4920 46548.pygtex) [399] (./_minted-Tutorial/C6B2C783E94EA95E84DF3F108F727AD4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:Bio.SeqIO-and-StringIO' on page 400 undefined on input line 146. (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/19A3D00CDA3CDDA100F55F41BCAAF54F9543DFECA235A69AE23006BA05B 4EB70.pygtex [400]) LaTeX Warning: Reference `sec:translation' on page 401 undefined on input line 201. LaTeX Warning: Reference `sec:SeqIO-reverse-complement' on page 401 undefined o n input line 206. (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F649543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A02396470619543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B9543DFECA235A69AE23006BA05B 4EB70.pygtex [401]) (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC655419543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE4087939543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 402 undefined on inpu t line 338. [402] (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA29543DFECA235A69AE23006BA05B 4EB70.pygtex) [403] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF6418319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F354509543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 404 undefined on i nput line 443. LaTeX Warning: Reference `sec:low-level-fasta-fastq' on page 404 undefined on i nput line 457. Overfull \hbox (5.83499pt too wide) in paragraph at lines 454--458 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [404]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 405 undefined on input line 480. (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA5569543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A9543DFECA235A69AE23006BA05B 4EB70.pygtex [405]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C9543DFECA235A69AE23006BA05B 4EB70.pygtex) [406] (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F89159543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqIO-conversion' on page 407 undefined on input line 643. LaTeX Warning: Citation `cock2010' on page 407 undefined on input line 646. [407] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC407373679543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C6B1FCFF3C4616196F6CE060D97D2587BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B69543DFECA235A69AE23006BA05B 4EB70.pygtex [408]) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A09543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqIO-index' on page 409 undefined on input line 801. (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582EBD02851C2FB632864165FCA4920 46548.pygtex [409]) LaTeX Warning: Reference `sec:SeqIO-index' on page 410 undefined on input line 823. LaTeX Warning: Reference `sec:SeqIO-sort' on page 410 undefined on input line 8 25. LaTeX Warning: Reference `sec:SeqIO-conversion' on page 410 undefined on input line 839. (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/474B445E26A3CD55A1BA5820E4D03C7DBD02851C2FB632864165FCA4920 46548.pygtex [410]) LaTeX Warning: Reference `sec:translation' on page 411 undefined on input line 905. (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B802763B27D7694A759DB2EBF16EF098BD02851C2FB632864165FCA4920 46548.pygtex) [411] (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A63052669566ECC2CFEDC7429F829576A D0DC6.pygtex [412]) LaTeX Warning: Reference `sec:gd_nice_example' on page 413 undefined on input l ine 1024. LaTeX Warning: Reference `chapter:seqio' on page 413 undefined on input line 10 41. (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B79543DFECA235A69AE23006BA05B 4EB70.pygtex [413]) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-len-hist' on page 414 undefined on input line 1109. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [414 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:seq-gc-plot' on page 415 undefined on input line 1177. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 415 undefined on input line 1191. Excluding 'htmlonly' comment. [415 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [416 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot' on page 417 undefined on input line 1269. (./_minted-Tutorial/90D5858002A1CEE4D697634EADDD2CA49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/6655B5CD97C33186A22E6897501301FF9543DFECA235A69AE23006BA05B 4EB70.pygtex [417]) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:nuc-dot-plot-scatter' on page 418 undefined on in put line 1345. [418 <./images/dot_plot_scatter.png>] (./_minted-Tutorial/601CCA4B782F1DA528DB81B0248031959543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `fig:paired-end-qual-plot' on page 419 undefined on in put line 1407. Excluding 'htmlonly' comment. LaTeX Warning: Reference `chapter:seqio' on page 419 undefined on input line 14 26. ) [419] [420 <./images/SRR001666.png>] (./Tutorial/chapter_testing.tex Chapter 23. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062144BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0444BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907344BBF456F55B5DC060035246D76 9EADB.pygtex) LaTeX Warning: Reference `sec:doctest' on page 421 undefined on input line 55. (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D44BBF456F55B5DC060035246D76 9EADB.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [421] (./_minted-Tutorial/3FB66F60C11B0B8CE53B4D1228F39850669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED44BBF456F55B5DC060035246D76 9EADB.pygtex [422]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A79543DFECA235A69AE23006BA05B 4EB70.pygtex) [423] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E9543DFECA235A69AE23006BA05B 4EB70.pygtex [424]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F444BBF456F55B5DC060035246D76 9EADB.pygtex) LaTeX Warning: Reference `sec:doctest' on page 425 undefined on input line 282. (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA299543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B82977119543DFECA235A69AE23006BA05B 4EB70.pygtex [425]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) [426] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B0345644BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC4344BBF456F55B5DC060035246D76 9EADB.pygtex)) [427] (./Tutorial/chapter_contributing.tex Chapter 24. LaTeX Warning: Reference `chapter:cookbook' on page 428 undefined on input line 32. [428] (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A3644BBF456F55B5DC060035246D76 9EADB.pygtex) LaTeX Warning: Reference `chapter:testing' on page 429 undefined on input line 75. LaTeX Warning: Reference `chapter:testing' on page 429 undefined on input line 91. [429]) [430] (./Tutorial/chapter_appendix.tex Chapter 25. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A4628599543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B429543DFECA235A69AE23006BA05B 4EB70.pygtex [431]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C429543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqIO_compressed' on page 432 undefined on input line 91. (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A203BD02851C2FB632864165FCA4920 46548.pygtex)) [432] [433] [434] [435] [436] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_pairwise.aux) (./Tutorial/chapter_msa.aux) (./Tutorial/chapter_pairwise2.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) kpathsea: Running mktexpk --mfmode / --bdpi 600 --mag 1+0/600 --dpi 600 tcrm1000 mkdir: cannot create directory '././nonexistent': Permission denied mktexpk: Running mf-nowin -progname=mf \mode:=ljfour; mag:=1+0/600; nonstopmode; input tcrm1000 This is METAFONT, Version 2.71828182 (TeX Live 2023/Debian) (preloaded base=mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm1000.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exbase.mf) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/tcrm.mf (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymb.mf Ok (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/exaccess.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txpseudo.mf Ok) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txaccent.mf Ok [0] [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [27] [29]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txgen.mf Ok [100] [109] [98] [99] [108]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txsymbol.mf Ok [13] [18] [21] [22] [23] [24] [25] [26] [28] [31] [32] [36] [39] [44] [45] [46] [42] [47] [60] [61] [62] [77] [79] [87] [110] [91] [93] [94] [95] [96] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] [146] [147] [148] [149] [150] [151] [152] [153] [154] [155] [156] [157] [158] [159] [160] [161] [162] [163] [164] [165] [166] [167] [168] [169] [171] [172] [173] [174] [175] [177] [176] [180] [181] [182] [183] [184] [187] [191] [214] [246]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txromod.mf Ok [48] [49] [50] [51] [52] [53] [54] [55] [56] [57]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrsuper.mf Ok [185] [178] [179] [170] [186]) (/usr/share/texlive/texmf-dist/fonts/source/jknappen/ec/txrfract.mf Ok [188] [189] [190]) ) ) ) (some charht values had to be adjusted by as much as 0.06943pt) Font metrics written on tcrm1000.tfm. Output written on tcrm1000.600gf (128 characters, 23548 bytes). Transcript written on tcrm1000.log. mktexpk: /tmp/texfonts/pk/ljfour/jknappen/ec/tcrm1000.600pk: successfully generated. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `Tutorial.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (437 pages, 3101391 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.83}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_pairwise.aux) (./Tutorial/chapter_msa.aux) (./Tutorial/chapter_pairwise2.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.toc pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...}SeqFeature objects}{30}{subsection.4.3.1} % [1] [2] [3] [4] [5] [6] [7] [8]) [9] (./Tutorial/chapter_introduction.tex Chapter 1. [10] [11] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 120--126 Underfull \hbox (badness 10000) in paragraph at lines 132--134 (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/C3217FD04973F24516F5530BB525A22CBD02851C2FB632864165FCA4920 46548.pygtex) [12 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 185--187 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612CBD02851C2FB632864165FCA4920 46548.pygtex [15]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535ABBD02851C2FB632864165FCA4920 46548.pygtex) [16] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B0213346781855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26DBD02851C2FB632864165FCA4920 46548.pygtex [17]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F2BD02851C2FB632864165FCA4920 46548.pygtex) [18]) [19] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/048D805D0CE39D0271B0A9A9F6FA0B90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CCFAD09A7C678CC6F23FB63113DD1EDCBD02851C2FB632864165FCA4920 46548.pygtex) [20] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0F44B540F3531194878FC29AF017902BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/739024CAA2FC886FEC674E3B4C3FD3A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E97622504BD02851C2FB632864165FCA4920 46548.pygtex [21]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D9386420BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/732D927996C79742AC990312B3D6EEB0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C270BD02851C2FB632864165FCA4920 46548.pygtex [22]) (./_minted-Tutorial/14DC45CA9BEAFF3B8A49C8E43A9FF33CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FC9049D1029A23D48B33F9D862ACC47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D394BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8DBD02851C2FB632864165FCA4920 46548.pygtex [23]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF17BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC0BD02851C2FB632864165FCA4920 46548.pygtex [24]) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C8753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B386BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A70BD02851C2FB632864165FCA4920 46548.pygtex [25]) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF82BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD64BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF98BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59D2BC7361BC3147180163BF1D4DDE79BD02851C2FB632864165FCA4920 46548.pygtex [26]) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B55990BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874DBD02851C2FB632864165FCA4920 46548.pygtex [27]) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/06DBC59F2EAD33E7A951888537876615BD02851C2FB632864165FCA4920 46548.pygtex) [28] (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C338BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F2723D89FDBA794E82A8285BABB369CB669566ECC2CFEDC7429F829576A D0DC6.pygtex [29]) (./_minted-Tutorial/64147FAF6F5C5028B073B3C809EE3E84BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFDB859800920408E228736AD921B5DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D95D20C3283ADEDD76DAB3382BB1B040BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE451BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2EBD02851C2FB632864165FCA4920 46548.pygtex [30]) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC4041D75FEA645B55AE8CD6DE45F64EBD02851C2FB632864165FCA4920 46548.pygtex [31]) (./_minted-Tutorial/43513B61020FA6436B91828F06EC1F8FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE692511644781A937B5C5E0025044B3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D388BA3E0B925CD1E55F633CBAD85C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/651C905E140A6022D7D692602C70F0A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C0BD02851C2FB632864165FCA4920 46548.pygtex)) [32] [33] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/032C91EF2474FD3535629DC0CDABC809BD02851C2FB632864165FCA4920 46548.pygtex) [34] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC2BD02851C2FB632864165FCA4920 46548.pygtex [35]) (./_minted-Tutorial/510764EE0BB38AD6C688E71989677507669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D849822BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD2085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D9669566ECC2CFEDC7429F829576A D0DC6.pygtex [36]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA601BD02851C2FB632864165FCA4920 46548.pygtex [37]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F926BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0DBD02851C2FB632864165FCA4920 46548.pygtex) [38] [39] (./_minted-Tutorial/AD47AD29D6F7927F9406BE5609676388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F3BD02851C2FB632864165FCA4920 46548.pygtex [40]) (./_minted-Tutorial/EF871449F651FE5E7DFD84165065B14ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D86C559003980DC8749AF92530435DFDBD02851C2FB632864165FCA4920 46548.pygtex) [41] (./_minted-Tutorial/1C0A562378DEEE8E210765437B3E1700BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0C3ED75879971F09D72A92585654A32CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E3920BD02851C2FB632864165FCA4920 46548.pygtex [42]) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F9689BD02851C2FB632864165FCA4920 46548.pygtex [43]) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B2340BD02851C2FB632864165FCA4920 46548.pygtex [44]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEBBD02851C2FB632864165FCA4920 46548.pygtex [45]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A85BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C59A3BD3577D6DA7BB95528A68C9B311BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D2457BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF82BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDFBD02851C2FB632864165FCA4920 46548.pygtex [46]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF1718501669BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1BBD02851C2FB632864165FCA4920 46548.pygtex [47]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E7BD02851C2FB632864165FCA4920 46548.pygtex) [48] (./_minted-Tutorial/B650815DDD2D74A390771EC1DCA2F0EFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9A2AD70EFB345CF0A1412F8838EE8843BD02851C2FB632864165FCA4920 46548.pygtex)) [49] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/3F38D5012926DD7C810DA2383F53D498BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB6789543DFECA235A69AE23006BA05B 4EB70.pygtex [50]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE5009549543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F19543DFECA235A69AE23006BA05B 4EB70.pygtex [51]) (./_minted-Tutorial/C82398A4A04383A063D2E648811230529543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC04910736669566ECC2CFEDC7429F829576A D0DC6.pygtex) [52] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C26669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD1622219543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD829543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE6BD02851C2FB632864165FCA4920 46548.pygtex [53]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E734519543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC395669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/58A82383AA9DEBBEEEC6694BA2DE777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9562C263804C6DD613F075A435553A9FBD02851C2FB632864165FCA4920 46548.pygtex [54]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C91BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/23394A4616015FFE4619934E98424178BD02851C2FB632864165FCA4920 46548.pygtex [55]) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C09BD02851C2FB632864165FCA4920 46548.pygtex) [56] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD4769543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E4215990669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D79543DFECA235A69AE23006BA05B 4EB70.pygtex [57]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/DDD2E1D663317F4FFB7F8B7F03E4989FBD02851C2FB632864165FCA4920 46548.pygtex [58]) (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF6BD02851C2FB632864165FCA4920 46548.pygtex [59]) (./_minted-Tutorial/FE4CF732C73126A3874795838D95FAB5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/55430EAFE498E385842834603E0B8C869543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB89543DFECA235A69AE23006BA05B 4EB70.pygtex [60]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E83669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/74E272C92C546FD61FA6D3DA5C178893BD02851C2FB632864165FCA4920 46548.pygtex) [61] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [62]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 849--854 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 892--895 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [63]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [64] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 46548.pygtex) [65] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD73429543DFECA235A69AE23006BA05B 4EB70.pygtex [66]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D4669566ECC2CFEDC7429F829576A D0DC6.pygtex [67]) (./_minted-Tutorial/C194E2231D844AE7D0223173D2A899919543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/29D12D495374A5A8C37AEB7083851DEABD02851C2FB632864165FCA4920 46548.pygtex) [68] (./_minted-Tutorial/920133226A22EEB682D854077D7FB78FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [69] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1350--1352 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [70] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1394--1398 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [71] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/3ADFB33A8FCD44DE0B5C01507B2DB238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25A6E63137B6A56CD2D73764BCE1E544BD02851C2FB632864165FCA4920 46548.pygtex) [72] (./_minted-Tutorial/D13F0042F125CA05626436DE4E8CB781BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2DB00FB61E886C9B2B0C32167865EF74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0949AD3DC6BE9CCF58F64F79BD4915A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CF32FADC31B097962A862D90D8A10CBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/903AB6690A1CF4AE727DC1FFB77A1C15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6F33B32BDC9680C9C7D7040612986506BD02851C2FB632864165FCA4920 46548.pygtex [73]) (./_minted-Tutorial/5F6577782E5DE79D2397B15BF86DC967BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07DC41A8BF287DA498DE4B15959D18BBBD02851C2FB632864165FCA4920 46548.pygtex) [74] (./_minted-Tutorial/591BBA1E8577010030620B01E5A14F20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB5982C8C32C47C82ABE174DA3544818BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2AEA73DD0A6E98B0116831C28909C61BD02851C2FB632864165FCA4920 46548.pygtex [75]) (./_minted-Tutorial/64BF6D35A03F70AEAAA2AAA3DC43503EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CBD23C79E3C74FF315A3AB96291C072CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/550CDC6F594FE8F9C8698B9498651D1FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C3B7BF91745CF80C21DDA7BC7E12DB9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D369F36288FDAE66507B7EA3133785BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/275C57CA9346FD92D66ED772EFB638D5BD02851C2FB632864165FCA4920 46548.pygtex [76]) (./_minted-Tutorial/E351517D2F72634807B0BA082864BC91BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/561499D273F7482F80B85971281528A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F8F8BF3E533C10411B330D0DFBBAEDBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (39.79793pt too wide) in paragraph at lines 303--304 [][]\OT1/cmtt/m/n/10 alignment2.sequences[]\OT1/cmr/m/n/10 , and if they are eq ual, by com-par-ing [][]\OT1/cmtt/m/n/10 alignment1.coordinates []\OT1/cmr/m/n/ 10 to [][]\OT1/cmtt/m/n/10 alignment2.coordinates[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/FFF39C1BDE890CFD0D421309D7984FE9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/94DE849C111B89EAF838DA335BBAF476BD02851C2FB632864165FCA4920 46548.pygtex [77]) (./_minted-Tutorial/EF8DD639E0B998522A0CCE5992B06FFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EFE3503086B619AD8E4D3CDE2157BB92BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/189516A17EE4564FFF9585613681ECABBD02851C2FB632864165FCA4920 46548.pygtex [78]) (./_minted-Tutorial/C6DB00074C37AA3A343241C7A25F8C48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A18B67253A310A659816946E20BE7953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C2BA4F675E7D3F80C73C1FC12B124E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BE9C889E033D5EBCC58AA22DE23A73A1BD02851C2FB632864165FCA4920 46548.pygtex [79]) (./_minted-Tutorial/7D0BA7CE3F074B380509C5718A93E555BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72E54CB8027D30B56F048D9BB0D4B8A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FA0C2F12873C34FFB4AEBD61E0691477BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F1427CDA782B7144A8EBFF22527912FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7FCEB2243EF9A554817F810B090D8B1BD02851C2FB632864165FCA4920 46548.pygtex [80]) (./_minted-Tutorial/76E34587E6003DC67C174EEC524C4088BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BF95AC10B0E3B6757FAD7C8076C4317BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5821BC1C27000ECB009BBA0C76C836CCBD02851C2FB632864165FCA4920 46548.pygtex [81]) (./_minted-Tutorial/FCF2AE05D74D27A241E13170CFA42D6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/727B246DA4EC05B845383788E75A74DDBD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/6625CF78F73663DAA9EAD5F94CA7F09CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B61C21FD4FCD600A92C640255AEC19E4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6D7600C21431793B09B1445F3A714A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72CCEF720EA6C136F734C715ADE5D584BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CE5E2A26CDD0636AB39B8066B992C33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/135C4B907D639EE153F66AD086FAB9B9BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/1F25F002C64691EAC8F06C6A94F725ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6D493E8CA48305C711FA03FFB282583BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E5063A0500138E66FD3E42A6E0C9FA3EBD02851C2FB632864165FCA4920 46548.pygtex [84]) (./_minted-Tutorial/1B43BDD39D94F9C28C02B03683B294D7BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (17.52367pt too wide) in paragraph at lines 727--1 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 122835789:122907314 ) (./_minted-Tutorial/7728ACBB8B5654A283BAC5E395F18EFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/65029EC2DE0387CBC1E35DD57E5037FCBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (17.52367pt too wide) in paragraph at lines 768--769 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 111982717:112009302 [85] (./_minted-Tutorial/4EEFD900807408EA076A3B9A9EA19BA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16E885E4228A1D53A85034B247975B7C669566ECC2CFEDC7429F829576A D0DC6.pygtex [86]) (./_minted-Tutorial/580FE58D8556F89B4F9DAB0B87E3CB6DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/436183BFDCF16E9CD994EFC472B940F4BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/02A14522C76BFFA1B6703CE73CEB4FE4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3168C611E2DFD6FF95EFCF8DD8AC500ABD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/0D8823DC13281FA67190F84B2EB65487BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DABC9E3F5430B52B4495D933CEF8F977BD02851C2FB632864165FCA4920 46548.pygtex) [89] (./_minted-Tutorial/63E9C7C15D3D496819075F363F942676BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2CA86AB1748972B28293A90E94331AFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93389450EEC92A30A6EAD14CB609C12EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/326D8AE82DD364BB2AE47D3268F235E0BD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/BA1C75B95D0577519E26FA1234C0E78FBD02851C2FB632864165FCA4920 46548.pygtex [91]) Overfull \hbox (47.19006pt too wide) in paragraph at lines 1079--1102 [] (./_minted-Tutorial/F3C6459BBEE5DC58BA23DE6A902E861E669566ECC2CFEDC7429F829576A D0DC6.pygtex [92]) (./_minted-Tutorial/878C4A71864137A879F515402C152953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62FDEB3CA937C176A55D32E8E2D9734FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/652288688656D87DB2236C858CA5E234BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/02ED2ECCD74F4EE93C5BD73ECF98808EBD02851C2FB632864165FCA4920 46548.pygtex [93]) (./_minted-Tutorial/F72FF9290B96E9DB4BB47406647CD586BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/620D3E672393822494756E9230009A53BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9E9D51005B371CD3068E46CFFF5138ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/27810C4F2B279E7D09594E917E7CCC5C669566ECC2CFEDC7429F829576A D0DC6.pygtex [94]) (./_minted-Tutorial/408828C89C3A93995AAF8919261A3BACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72457E1B58E712485EE91BE4473EEE72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB98E799197F765387B6A45A09FAA7E4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E15CE8A0C57207AA19F76AD8E491A47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/088B23A633BB93F3628BB91E22FA9C32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9FECB08222E65B8690849E14245AD70BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7CAF6F4125F840746A040D87B213078BD02851C2FB632864165FCA4920 46548.pygtex [95]) (./_minted-Tutorial/13FAFA72DE7E5D7ED5C7AA146C87E07C669566ECC2CFEDC7429F829576A D0DC6.pygtex [96]) (./_minted-Tutorial/FCE46CA6ACACF0C7944504F6C593F092BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F582FFD514E469F0BCC94B0A8D6C2309BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6C6E1CD361994D53909B5E92EDCC3A2ABD02851C2FB632864165FCA4920 46548.pygtex [97]) (./_minted-Tutorial/6B6B2C99C0A1F58F9A0A4D856A12EB29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FF08D4C80088C9A776F6CA0B6D13CDA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7525AB42EC6D0D322D22333D6E0DB4C6BD02851C2FB632864165FCA4920 46548.pygtex [98]) (./_minted-Tutorial/F06485BF4AECFA0C2925D97B9BBBBFCCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71FC072DD12D6A49A5EF04056D641289BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0C4B3DD5091108A53F462038C0BF984BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E5CFE89E2460A5F7AEA9A9A70315A745669566ECC2CFEDC7429F829576A D0DC6.pygtex [99]) (./_minted-Tutorial/3145318078A1E0D11EF08F2B4A723DF9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/6BEDCFEC52171C194CCBEEE68336B6FEBD02851C2FB632864165FCA4920 46548.pygtex [100]) (./_minted-Tutorial/728D95FF1157A4F55E0F89EE37FBB3DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/775FBC2022BDA37BFA4EB2AB71CA857ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFED1C90C7E7C1ACD1F2455F0B1EB130BD02851C2FB632864165FCA4920 46548.pygtex [101]) (./_minted-Tutorial/4031E6CD0032524E67FFDDFB760A32C3669566ECC2CFEDC7429F829576A D0DC6.pygtex [102]) (./_minted-Tutorial/DDA66B46BA334A6C95DED4D77AF3A329BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D49B53CB216BC60B4A0CD93F8EDCEEFEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B67982D457FD8E29E4C09FB1A86B6B5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AAF8B775C65E63C6DEA2CF99E4CF3F5CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C52714D3F31A23FF97AE13AC68F31D24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B1A4A6B67A42A8FE1F47A03C39D8C2BD02851C2FB632864165FCA4920 46548.pygtex [103]) (./_minted-Tutorial/32B0268F696E6C906B39B8A7E2EADB99BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/369365DB6BB86DD5F99CDDDCBE808FC7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3DFC00B619541BFC22DB2A1F9E1CF3F1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B418F5413E3E5967675F1EE20E43E7D2669566ECC2CFEDC7429F829576A D0DC6.pygtex [104]) (./_minted-Tutorial/E7CA8E49B48EDEAC89645C5D46367209BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BF0EFC3BBA49964C1F7EDC699CA2119BD02851C2FB632864165FCA4920 46548.pygtex [105]) (./_minted-Tutorial/710584AB2A17222A6CF044216E625547BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F0E6F76CD168A7DA467A15173D3E5F5FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2C7D1C8BB3FFCAE7F757F20452F57398669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F7D955447EE56C5213D504995DA81512BD02851C2FB632864165FCA4920 46548.pygtex [106]) (./_minted-Tutorial/4275ACEB46197BFA7CBB55DFB23D04F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7ECD6774A96C15E49BF845A3F32E9792BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E3F3096732803EAB55BEB5C85E00158BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D0CA54BA1AC51140D944EC7677AB40ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FCA7B705B226BD00CEBA6B5CA464C90BD02851C2FB632864165FCA4920 46548.pygtex) [107] (./_minted-Tutorial/991497AC1F8BC8EB3BC0932103D72E97BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F3A6067477F91454C0E0F897247238A9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAB65899C8C61CAE9A5B9F57B0525168BD02851C2FB632864165FCA4920 46548.pygtex [108]) (./_minted-Tutorial/4176F2D72DD806E2581563C9A3E1CCF8669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/E7795BC7D9C9EEDA96F7F0ACE547D6A8BD02851C2FB632864165FCA4920 46548.pygtex [109]) (./_minted-Tutorial/F479B578897BBBCA13291638972D27D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/70D9A814BC91183C4203F2C91A9F5D18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BB9243FFB4F82E108CA4783B9AE90032669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A79FD4B98960A552D11D76D39107647EBD02851C2FB632864165FCA4920 46548.pygtex [110]) (./_minted-Tutorial/35219A367A7A259D653DB851AFF9B48BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E8940648A6DC5BE55245ED0695D6637BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36B05D091F3889C47C41E8035C57ACCBD02851C2FB632864165FCA4920 46548.pygtex [111]) (./_minted-Tutorial/C7841EA697DC62B8874776CF6589B339BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/01DB3E327B7A6B94CAC76D2A55FF51D8669566ECC2CFEDC7429F829576A D0DC6.pygtex [112]) [113] (./_minted-Tutorial/97B71D65044A8A79ABF94F73EAFCEEA0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/10F25524E3AEE86E3E204995105A190ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3202D4E9772EE38E2013380B2E2CC181BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08CF1EF07A3F38F868150C9856B58A27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6E8B87BC559E608D255ECEC23FB5033BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B02B23920569460C1CB82D1FCF7BF6B9BD02851C2FB632864165FCA4920 46548.pygtex [114]) (./_minted-Tutorial/50ECFF8668DB07517383C44AABCC8F2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2C72F0FFD36515704CE3627577398079BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E5C95FE7BAA0B71FB579FCFAD90A7EABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AC9AE3BAD46A3283D7695A8A1DFC09CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/608C2857C3DA290EF766A8CEF7B1C7B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCD1D44140BADB1AF9FB5D8E5554370DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B145C500B6E80787AD14F38D64D583D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5E41F1911035A7C9C91D8D3584522777BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (66.10475pt too wide) in paragraph at lines 2400--1 \OT1/cmr/m/n/10 Confidence val-ues for the pair-wise align-ment are stored un-d er the [][]\OT1/cmtt/m/n/10 "Confidence" []\OT1/cmr/m/n/10 key in the [][]\OT1/ cmtt/m/n/10 alignment.column_annotations [115]) (./_minted-Tutorial/7BD0A13AC34B05F6B26F4E5A3DE9CAD5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/490600366C0690E5A4119EE69F1A27BEBD02851C2FB632864165FCA4920 46548.pygtex [116]) (./_minted-Tutorial/AA2DF31C3E608D48FACD9B1AD6A3B06DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA18A90574233A7CBD7AC58CEE8C61ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C4EE37E97FADDD20B90D67D355ABC641669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/466D9AC63E30EC1D8DBB385FDDE97605669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9EFDBE406FBBC44613EA7FE6429D79CF669566ECC2CFEDC7429F829576A D0DC6.pygtex [117]) (./_minted-Tutorial/9A57704BA82726E81B0CFAC8EC274F18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/970B10888A855C998FC6B51F7B24852BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C9D0266C5AC74051B0CE621CD4A4DFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9B6E2D243CC026BFB3F3EC39E26649ABD02851C2FB632864165FCA4920 46548.pygtex [118]) (./_minted-Tutorial/876138142A523ACF7D2168D57A36547C669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8A2B8E693CDDB40736BBBEB205FAD998669566ECC2CFEDC7429F829576A D0DC6.pygtex [119]) (./_minted-Tutorial/F0EF92601DF394F0DE666A27F8EA38C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB568F215EFD0BAF6D3AB0AED2E3568FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6E86846A6EEB5463DCE1D426E20D18BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7AACEF698A7ECEA3201959C460F7C449BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD72B9B4FB0A7A55B3D4358101869C38BD02851C2FB632864165FCA4920 46548.pygtex [120]) (./_minted-Tutorial/42385B036BF17C722FAD3F83E75FDEF4BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (0.18794pt too wide) in paragraph at lines 2685--1 \OT1/cmr/m/n/10 Here, the writer makes use of the in-for-ma-tion stored in [][] \OT1/cmtt/m/n/10 alignments.metadata []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 alignments.identifiers ) (./_minted-Tutorial/A711A2B68D61BDEC7BBF208D12A5E99ABD02851C2FB632864165FCA4920 46548.pygtex [121]) (./_minted-Tutorial/A5E9CB9B5E078AE40453E67976FBFFB7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F8AB36DAF4F80C7F9570A5A27E5CBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A221309DA1262965A6A47038C07CA1EABD02851C2FB632864165FCA4920 46548.pygtex [122]) (./_minted-Tutorial/03997BF8FD904516364706538520D638BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8B9AA9FE7614ADF0166372B2B4DCBE98BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2E092FEC403E36D654CD1C513AC61BEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1602FA8DDE44CF495CA71021E8A69CA4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEC68A2971DD620A61F610A3EB178532BD02851C2FB632864165FCA4920 46548.pygtex [123]) (./_minted-Tutorial/B3AF874327BA15EBE6204D91C0D86CF7669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/617E2070639B6FAA65FFAE9505A68098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32B286EC4D6B81356503CD173A5CF440BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FFB280D587B0F04991BA484540291F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DBB25FD6EFAF4F04B1C523503FD7F57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7D2D9F2132871FD986A19CAFEF99AD9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/25F14621C45419CA1F5D3183667F338DBD02851C2FB632864165FCA4920 46548.pygtex [124]) (./_minted-Tutorial/924ADD068BEF8F0614EDD05997B9249DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (38.57419pt too wide) in paragraph at lines 2940--2941 \OT1/cmr/m/n/10 in [][]\OT1/cmtt/m/n/10 alignment.query.annotations["hard_clip_ right"] []\OT1/cmr/m/n/10 (or [][]\OT1/cmtt/m/n/10 alignment.query.annotations[ "hard_clip_left"][]\OT1/cmr/m/n/10 , (./_minted-Tutorial/9474707530175BC7B9D6A1D03533361EBD02851C2FB632864165FCA4920 46548.pygtex [125]) (./_minted-Tutorial/121ED15AC63942C5E8C155D208F51642669566ECC2CFEDC7429F829576A D0DC6.pygtex [126]) (./_minted-Tutorial/44C53D5554120E7C471E54177E855AAABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/473C2F0DACB920D96F956D9EC1E0FE2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C672D7F97D9560C4165396EE0AABB2FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E8B29E8871EDF193B23B50B7F8E78B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AEA5ACF2CDA6FED4928E102348916BFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EC0AA256D9EAEE293C008EDA1843C94BD02851C2FB632864165FCA4920 46548.pygtex [127]) (./_minted-Tutorial/2C4E6A03B034FAA4C45E9D84BB3CCD85BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3F1B3C24801F420BC846C7C6EFB2F160BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex [128]) (./_minted-Tutorial/FA4FFD0DB7DAF8EAF7DDF9EC40FBF9CDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C68F3814A4AF124F08223E08EAB5EACBD02851C2FB632864165FCA4920 46548.pygtex [129]) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C46E00AFDD445BF5A1696DA110EC1108BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5D6C1752DC3E67EFB4B1F35AE1FE9CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/66E5C3A06978A0FE5189F36167EC3560BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDE2E897AFFF16770CB3BDE90724144BD02851C2FB632864165FCA4920 46548.pygtex [130]) (./_minted-Tutorial/6252059FEB1C539AB3AA84065D1AFE0A669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D1ECEEC0CDB23D95023740F189D293D6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/829F30DD660CB5F31B0BB2E8EF830166BD02851C2FB632864165FCA4920 46548.pygtex [131]) (./_minted-Tutorial/865853EFB9A9F2444191804BDD976FE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46D2E859D898B3FD9CDBF6F46910A518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61A566C18C28E8933ABF3876588877B8BD02851C2FB632864165FCA4920 46548.pygtex [132]) Overfull \hbox (20.18835pt too wide) in paragraph at lines 3330--3331 \OT1/cmr/m/n/10 The same ar-gu-ments can be used when writ-ing align-ments to a n out-put file in PSL for-mat us-ing [][]\OT1/cmtt/m/n/10 Bio.Align.write[]\OT1 /cmr/m/n/10 . (./_minted-Tutorial/B66E52A450DAB10C11EF0A5303F7F66EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/75A887FC47BD51521208CEC8CD530989BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B3446A67A6D36BD7649B7DA288A73602BD02851C2FB632864165FCA4920 46548.pygtex [133]) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EBC50F8A4A84EA141473F0B681CE103EBD02851C2FB632864165FCA4920 46548.pygtex [134]) (./_minted-Tutorial/8B79D88CC108A51F0F80C33707F28F17BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (30.38152pt too wide) in paragraph at lines 3454--3455 []\OT1/cmr/m/n/10 To write a big-Psl file with Biopy-thon, use [][]\OT1/cmtt/m/ n/10 Bio.Align.write(alignments, "myfilename.bb", fmt="bigpsl")[]\OT1/cmr/m/n/1 0 , (./_minted-Tutorial/DB4A558C022A90213DAB447D381A2ECB669566ECC2CFEDC7429F829576A D0DC6.pygtex [135]) (./_minted-Tutorial/6A346D8618DC3432DE9566F9215CECE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/89A48A5075DC87C268A946A0C95240FABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex [136]) (./_minted-Tutorial/BDC663A31E94EAB00717271E001B32C9669566ECC2CFEDC7429F829576A D0DC6.pygtex [137]) (./_minted-Tutorial/97D9AC3C79900370497414083DEB2D76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F14B11D4C5AEFC47BBFC6FBF8352CC20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2115B439B9C7613ABE3C048C7F77E511BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (21.6891pt too wide) in paragraph at lines 3610--1 []\OT1/cmr/m/n/10 The "[][]\OT1/cmtt/m/n/10 q[]\OT1/cmr/m/n/10 " lines show the se-quence qual-ity, which is stored un-der the "[][]\OT1/cmtt/m/n/10 quality[] \OT1/cmr/m/n/10 " dic-tio-nary key of the[][]\OT1/cmtt/m/n/10 annotations ) (./_minted-Tutorial/DA5833B89F52A7B4A2B9B32D40B54EA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/452401475A94573BF37D7D123698A53CBD02851C2FB632864165FCA4920 46548.pygtex [138]) Overfull \hbox (1.04709pt too wide) in paragraph at lines 3654--3655 \OT1/cmr/m/n/10 To write a com-plete MAF file, use [][]\OT1/cmtt/m/n/10 Bio.Ali gn.write(alignments, "myfilename.maf", fmt="maf")[]\OT1/cmr/m/n/10 , where (./_minted-Tutorial/4A087A9D83F47C007944C81E5F701759BD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/B2EBB3A8D801374C6400A39E9710C3E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CEAA559B7186E2C8E02813D13980A48ABD02851C2FB632864165FCA4920 46548.pygtex [140]) Overfull \hbox (5.88144pt too wide) in paragraph at lines 3775--3776 []\OT1/cmr/m/n/10 To write a com-plete big-Maf file, use [][]\OT1/cmtt/m/n/10 B io.Align.write(alignments, "myfilename.bb", fmt="bigMaf")[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/96732D1FD6A8A472AD4BC4FB4E609A49BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/92EE0FCB2E3CBC30A200F4F5FE5BEDBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9585E934C115EF3B41C1E16EAAFFA2B6BD02851C2FB632864165FCA4920 46548.pygtex [142]) (./_minted-Tutorial/118275EA6694D0B766E9BD4F4D97FFF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20992EB20E2B00D18C30E5283B8F8620BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04A222C3764F8292CD85E13113B2E355BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF2CB3A0227D1D6D123733A23C3502FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/134808D506F7EBEDDC21AEFB8B1C1AD4BD02851C2FB632864165FCA4920 46548.pygtex [143])) [144] (./Tutorial/chapter_pairwise.tex Chapter 7. (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAAB94B5EBAA776852055B38D072679EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59C4861F9CFA406680FB108F7638DB18BD02851C2FB632864165FCA4920 46548.pygtex [145]) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D01BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2422230E37F8F87089496D212F415650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7C1865F3A0AC01C199018850C2CBF24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76E331C5187C259B69198E91FC4AD112BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF7EA4D0E316F88B3A609CF62C6CD357BD02851C2FB632864165FCA4920 46548.pygtex [146]) (./_minted-Tutorial/A564D138D2F52B4E2858B9D14814966BBD02851C2FB632864165FCA4920 46548.pygtex) [147] (./_minted-Tutorial/B0937117DDA6BB67D133C99E550AD5BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/0A885050DEEEFE55D8800A555FD32426BD02851C2FB632864165FCA4920 46548.pygtex) [149] (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) [150] (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. Overfull \hbox (32.852pt too wide) in paragraph at lines 466--510 [][] (./_minted-Tutorial/DCCEE6D592009E7B8E7DE81563D8D4CEBD02851C2FB632864165FCA4920 46548.pygtex [151] [152] [153]) (./_minted-Tutorial/98D9A5E0CD47E306CA0DA2AFE878514ABD02851C2FB632864165FCA4920 46548.pygtex [154]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE1911BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C9DFA2EBF75572BAC340EC89D69B3D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB8671BD02851C2FB632864165FCA4920 46548.pygtex) [155] (./_minted-Tutorial/27E1D19EBBD5F4A0476AAC2BD7950A46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/ED55B2BAF04247D4F10E951590AA5077BD02851C2FB632864165FCA4920 46548.pygtex [156]) (./_minted-Tutorial/BA096BCFB5777C90CA38AE388186DAA6BD02851C2FB632864165FCA4920 46548.pygtex [157]) (./_minted-Tutorial/9FF41FE72E025C3EC8E41470B268E105BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034BBD02851C2FB632864165FCA4920 46548.pygtex [158]) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE06BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7323803F0E90CDA6FB16D10E868318BBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FBFC10402209A281F117C1A7C3D2057DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/88E3C6FE8CD1E52180656649B61F8CBBBD02851C2FB632864165FCA4920 46548.pygtex [159]) (./_minted-Tutorial/3352A1628AB7C0D638BB368952D0DEDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/842D73F66680850822D006857AE71FE7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2D6A808BF4EE516297A6B3C245DD911BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F18349AE10604FDE1CA7EB0C07144518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E4DBF912323F10D195B3AA3AEC63F53BD02851C2FB632864165FCA4920 46548.pygtex [160]) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/79A21B2A8F8F6AD65F6B1F3793D80A86BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6463A9B121897EB3CE22238D6527FE06BD02851C2FB632864165FCA4920 46548.pygtex [161]) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA825278BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFDD135A81C509EC7F35C141D2CAD51BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6126AB026498E1F63D451B1D4658AA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/902EEC7A1CB3027146D926159B4B460ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2BD903EAA6E97263AEFF453922CD6CD3BD02851C2FB632864165FCA4920 46548.pygtex [162]) (./_minted-Tutorial/0CFA6BD42F59D71E296FF2027BC6CC94BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D86241664707BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9316B67A34DB9BF6C888C15D5F0F593BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BA3947FA62C1EB757A2C26D0BF0AC4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBBB23BD87A1FCE1DBDC131052E5E921BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/957759CC14C7D6EB3A9289AC275F965FBD02851C2FB632864165FCA4920 46548.pygtex [163]) (./_minted-Tutorial/E342F3558CF8E1CEC0DA0A4E3B4A0159BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4FA358182F6BF8C8A2D01A4AB6C958DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (44.90923pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 Here, [][]\OT1/cmtt/m/n/10 background[:, None] []\OT1/cmr/m/n/1 0 cre-ates a 2D ar-ray con-sist-ing of a sin-gle col-umn with the val-ues of [] []\OT1/cmtt/m/n/10 expected_frequencies[]\OT1/cmr/m/n/10 , Overfull \hbox (13.77237pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 (in-ner prod-uct) cre-ates a ma-trix of ex-pected fre-quen-cies where each en-try con-sists of two [][]\OT1/cmtt/m/n/10 expected_frequencies Overfull \hbox (211.48245pt too wide) in paragraph at lines 1152--1153 []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1 /cmtt/m/n/10 expected_frequencies[^^MD^^M, ^^ME^^M] []\OT1/cmr/m/n/10 is equal to [][]\OT1/cmtt/m/n/10 residue_frequencies[^^MD^^M] * residue_frequencies[^^ME ^^M][]\OT1/cmr/m/n/10 . (./_minted-Tutorial/C9E8E52F2D57AA9166F02E5B946490F8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4CCE619EDA1B5136415DCBC81E02F94ABD02851C2FB632864165FCA4920 46548.pygtex [164]) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/659317FF2415828FBE0F4505ECB5B4E5BD02851C2FB632864165FCA4920 46548.pygtex [165]) (./_minted-Tutorial/60D893638743BD147116D13E00593D6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9AD9216297281F0858F16EA5C03B98AFBD02851C2FB632864165FCA4920 46548.pygtex [166]) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9EDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C42B04C08C3B07CABB6D2D7AE1F1B6DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/691C9A3D9A1EB52FAECF7E4C91F03BE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9A7868CC2484B4CFB34F94E7549F2519BD02851C2FB632864165FCA4920 46548.pygtex [167]) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA77BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF796600BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 1380--1381 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C7134716BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/399250FB2BC395588B8004ACD928BE9CBD02851C2FB632864165FCA4920 46548.pygtex [168]) (./_minted-Tutorial/882BD2544386DECA236BF25C7DD64857BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FCA15B328DDB0383F97012E3C1FA70BD02851C2FB632864165FCA4920 46548.pygtex [169]) (./_minted-Tutorial/DA98355B1CF48169F9C82F2DD1F86A29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D646E6B49807044DBDC43707A09846BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/467CA50C36874E405E988587FEC07686BD02851C2FB632864165FCA4920 46548.pygtex [170]) (./_minted-Tutorial/E4398C5237FE7113BC5A8DE3B0E138A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E827958137C7E69DAEDB0C4151298E62BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A94C18D2207C354646F831D57FD85B35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/801A90831A5799E3FF1FC0A5E721F4F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D8BD02851C2FB632864165FCA4920 46548.pygtex [171]) (./_minted-Tutorial/0FE6E4AA3B9932059ECAAF000D2B335ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E006359914F4A2F87CC6BE376E4E5BB9BD02851C2FB632864165FCA4920 46548.pygtex [172]) (./_minted-Tutorial/E44672122CC05CB47AD10A19D652F781BD02851C2FB632864165FCA4920 46548.pygtex [173]) (./_minted-Tutorial/DF0F53F9E417CC5E3DE7A77007840AF7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0D981AA6FBDA65EF7598D9446CAD490BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/170B41004F15599FA3468CE46E0C5585BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (35.76202pt too wide) in paragraph at lines 1725--1 [][]\OT1/cmtt/m/n/10 PairwiseAligner []\OT1/cmr/m/n/10 class de-scribed above ( see Sec-tion [][]7.2[][]). The val-ues spec-i-fied by the [][]\OT1/cmtt/m/n/10 frameshift_minus_two_score[]\OT1/cmr/m/n/10 , [174]) (./_minted-Tutorial/9C680E660852DC23B54FAE3FACAE931CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BEDEB1E0209E6C09A0B1747245E6DA33BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (22.90215pt too wide) in paragraph at lines 1769--1 \OT1/cmr/m/n/10 This is due to a -1 frame shift event dur-ing trans-la-tion of the sec-ond nu-cleotide se-quence. Use [][]\OT1/cmtt/m/n/10 CodonAligner.align [175]) (./_minted-Tutorial/ED358F65899143A8C9C2BD533FBCB992BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DEE5ACDC4529864EB53E97C276F5529DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B42BF333D0818A27536BF9C3E60B86DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE6F9F5E53CD7E33BB3EB34479259508BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B5BC2DDE1D32E1F60B8EDEC763D06CBABD02851C2FB632864165FCA4920 46548.pygtex [176]) (./_minted-Tutorial/D74D5F09CEB9C29FD7B152A56BAC5CEABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/98DC2A4B7E45278A8B59A43E816DB897BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (11.49387pt too wide) in paragraph at lines 1909--1910 \OT1/cmr/m/n/10 tions per site (dN) and syn-ony-mous sub-sti-tu-tions per site (dS). These can be cal-cu-lated by the [][]\OT1/cmtt/m/n/10 calculate_dn_ds [177] (./_minted-Tutorial/60AFD6CEF624135FDFB352FB0261DE45BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/80F110C5D8FAD1898979F32619E5AB26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4DB4DC7F5A7830C22B1CDBAE4515CFCBD02851C2FB632864165FCA4920 46548.pygtex) [178] (./_minted-Tutorial/7B94E0EE4938A8FCA9BA75776BF6FBFABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B97288BF34F7AF5F3DB622A20FF46C98BD02851C2FB632864165FCA4920 46548.pygtex [179] [180])) [181] (./Tutorial/chapter_msa.tex Chapter 8. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF42669566ECC2CFEDC7429F829576A D0DC6.pygtex [182]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AECBD02851C2FB632864165FCA4920 46548.pygtex [183]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A31077BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F2669566ECC2CFEDC7429F829576A D0DC6.pygtex) [184] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C560407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD331669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B44533669566ECC2CFEDC7429F829576A D0DC6.pygtex [185]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF756BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE669566ECC2CFEDC7429F829576A D0DC6.pygtex) [186] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A14669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF020669566ECC2CFEDC7429F829576A D0DC6.pygtex [187]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C5669566ECC2CFEDC7429F829576A D0DC6.pygtex) [188] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D318BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A23714477669566ECC2CFEDC7429F829576A D0DC6.pygtex [189]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 436--437 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 444--449 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [190]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [191]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [192]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [193] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [194]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [195]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [196] (./_minted-Tutorial/57CFE9DC5CD81FB0596F85897E6DA692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [197] (./_minted-Tutorial/13CFE6D1070039CAFDFF56DF04368770BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD8C82261629F77671BA754C74700E87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/584F58A1C6A85AF94480529177AA7D3FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B2B320FCB1CB4E31AB099291F932EB0BBD02851C2FB632864165FCA4920 46548.pygtex) [198] (./_minted-Tutorial/9D45F62EAC81CD13AAAF3450CF3A232ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/340D58639C2681751BEF2047783DEEE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F21E2E5C5DBD6EF9E6F640CC5F4C714BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72F8B65B0D3D88C3B10844472B106E41BD02851C2FB632864165FCA4920 46548.pygtex [199]) (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/58DE1694476DA2E216D59B45BB05C7C7BD02851C2FB632864165FCA4920 46548.pygtex) [200] (./_minted-Tutorial/421102D8AD818AF5ACDDF3088BC94F74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2E95BC5863623750A91BBE3F39CC619BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7036E919E25181C06CA4FE1AB45111CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E934A51665FDB7C86D79CF26E1D3355BD02851C2FB632864165FCA4920 46548.pygtex [201]) (./_minted-Tutorial/CC02B4199DEBDF02C873B29A4D23E2F8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA0C3D2760186CF61A1F541B6E07C05BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C0717BD02851C2FB632864165FCA4920 46548.pygtex [202]) (./_minted-Tutorial/01E13C07FE452CF1FDB6A6A35FDCA3C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E3EA69F3BBE8D7A4714A13459DD7618BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF976D90D5CFB8FBE1740CE553C3DE82BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1256--1257 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/666ED93D8D8EA6ECB692EA545A34C9BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex [203]) (./_minted-Tutorial/27194EF8B620D19B97A86FC4EBC01851BD02851C2FB632864165FCA4920 46548.pygtex) [204] (./_minted-Tutorial/5543453A39ABA62157B76DBB62BF3769BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex [205]) (./_minted-Tutorial/DCCFE080F632390BC5C8A4A75BFBDD23BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8457D1842F832E12A9AD5EADD8062630BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex [206]) (./_minted-Tutorial/3BD4CBE24FA7DB3D645FBBF99722FA4F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9878C5723ABE83D5948A4EBBD103F2CA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5FE9E0DE95593B6491CC762F62613D36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/92EB98E95BD8980B6AE82598444E9F00BD02851C2FB632864165FCA4920 46548.pygtex [207])) [208] (./Tutorial/chapter_pairwise2.tex Chapter 9. (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/44E2C06C8661B128385CD75A7E7608AABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F120EF3444F3192D48657B4E52407017BD02851C2FB632864165FCA4920 46548.pygtex [209]) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F2091BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466DBD02851C2FB632864165FCA4920 46548.pygtex [210]) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C71BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75ABD02851C2FB632864165FCA4920 46548.pygtex)) [211] (./Tutorial/chapter_blast.tex Chapter 10. Overfull \hbox (5.71313pt too wide) in paragraph at lines 43--44 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? CMD = Web & PAGE _ TYPE = BlastDocs & [212] (./_minted-Tutorial/A6D333F851BCB09A0C02030C1BC37AB1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69F91830197D9990EA9A0BD7D074EE21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4EBD02851C2FB632864165FCA4920 46548.pygtex [213]) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) [214] (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/88BD5D9B190061FD4FD34D2573EE4792BD02851C2FB632864165FCA4920 46548.pygtex) [215] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE5218004BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F40394BD02851C2FB632864165FCA4920 46548.pygtex [216]) (./_minted-Tutorial/A614B982013DB6EC38FCADD82303A8BEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68259DF5B1930070C029D5A72D891A36BD02851C2FB632864165FCA4920 46548.pygtex [217]) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B1924669566ECC2CFEDC7429F829576A D0DC6.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 476. ) [218] [219 <./images/BlastRecord.png>] [220 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 11. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [221] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [222]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [223]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [224]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [225] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [226]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [227]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [228] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [229] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [230]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [231]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [232]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [233]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [234] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [235] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [236] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [237] (./Tutorial/chapter_entrez.tex Chapter 12. [238] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB5BD02851C2FB632864165FCA4920 46548.pygtex [239]) (./_minted-Tutorial/BE69E60966963418560089D2DFFA721BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA36BD02851C2FB632864165FCA4920 46548.pygtex [240]) (./_minted-Tutorial/90EE68BD33BA5A5CDDC15A58DE3769DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C008BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474B6317DE32E44C65767FFD4D132892BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F6BD02851C2FB632864165FCA4920 46548.pygtex [241]) (./_minted-Tutorial/570A44C26E360300ABEECACE7E48FE7BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C68BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E8F788B5B01D8C8A4DBF9235CB05362BD02851C2FB632864165FCA4920 46548.pygtex) [242] (./_minted-Tutorial/00763064983507F32B88C306DFA40494BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53F668B0CE9069489F6D35B114D072B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/49E5F2A1DFC2444E5A673AD6C6E3F19FBD02851C2FB632864165FCA4920 46548.pygtex) [243] (./_minted-Tutorial/46751534B93778AB6E7EE90ACA2EC1DEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C50C3FBF7BB51714D959B2E35A15830FBD02851C2FB632864165FCA4920 46548.pygtex [244] [245]) (./_minted-Tutorial/90B50EB67F311E9802115D3378F7F3A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4D148476913E81D469C49EC2ED2E4269543DFECA235A69AE23006BA05B 4EB70.pygtex [246]) (./_minted-Tutorial/7BEF78A395312D4138ADAAED85869FE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF008BD02851C2FB632864165FCA4920 46548.pygtex [247]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68622353B578A611D2F621023E3C4BD1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D3C77609B61D3F46B793852609D1E4A1BD02851C2FB632864165FCA4920 46548.pygtex [248]) (./_minted-Tutorial/01E1B282D67C006BF30065A545EABFB4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E0944BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E0DB204F613774290A8485A084337CECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A760ECBEB3B2FD29A53BCA5D183DAFFCBD02851C2FB632864165FCA4920 46548.pygtex [249]) (./_minted-Tutorial/0E5336FE7E3A88121498608010025EF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF38669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E71669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4E46E525923D539FE28933C22912C4F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB86669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C20FD6887ACA76A3A6BB41D0F8D1E49CBD02851C2FB632864165FCA4920 46548.pygtex [250]) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5A768DAE26A5087A2B94A01E741705DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B669566ECC2CFEDC7429F829576A D0DC6.pygtex [251]) (./_minted-Tutorial/D6F6C0600C1A353DC53F7C5053F21845BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/42D56AFB832DDE5E3731A1DA56712385BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EF35C66998219AA15568E5FA366261EBD02851C2FB632864165FCA4920 46548.pygtex [252]) (./_minted-Tutorial/CD3676C48A9629929A55320028B512E5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD669566ECC2CFEDC7429F829576A D0DC6.pygtex [253]) (./_minted-Tutorial/BA0AB018AAD76A735A66112724779B6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/265BCBE09451F85D4BB86E81E6F3D4E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/444791288FF5BDC5902CCB9784A155F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B09039A2D5E19CEC9E137775753247BBBD02851C2FB632864165FCA4920 46548.pygtex [254]) (./_minted-Tutorial/8A37ACED6410F897928FCB7C50949E76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E8409E14FB2D552933B09043928680F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD7F3CF796C1A867CB155C96F23EEF1BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A31A48992D09DD96D61522A7043B6CD3BD02851C2FB632864165FCA4920 46548.pygtex [255]) (./_minted-Tutorial/2A4C90292B912D4CC89B37352989263BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F2019669566ECC2CFEDC7429F829576A D0DC6.pygtex [256]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/67F7BC27D166185C4B7B9A9F270ACDA5BD02851C2FB632864165FCA4920 46548.pygtex [257]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA19543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/DB935BA8B2CE7FC7C166E4B75EBE6265BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/291147B743C75A3F4B2DE070CFA1B2D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71ABD02851C2FB632864165FCA4920 46548.pygtex) [258] (./_minted-Tutorial/18B8A1741AF884D30B8BE92DFD650BAEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD0BD02851C2FB632864165FCA4920 46548.pygtex) [259] (./_minted-Tutorial/50F11612D2ABC00C1DFEDBD9AAF8BB3BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CC25FFF338C00383DCB063570D88219BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B642038BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C29234A01846A769E0662D844733154DBD02851C2FB632864165FCA4920 46548.pygtex [260]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/83AF94F97D8DB6C14498938D53D9F761BD02851C2FB632864165FCA4920 46548.pygtex [261]) (./_minted-Tutorial/F84312826D2E2BBFA3208F42493E2349BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0918D05D7A12068693442FD750C7FA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A10F5BBA5C9ACB9164926A93053C9077BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E45AACFBE1E2FA38805A72A89828A00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D76169664531538D144C55FFC33571BBD02851C2FB632864165FCA4920 46548.pygtex [262]) (./_minted-Tutorial/FD60404C05CBEF7AE40C25F2F0EC251FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8322E0DFB7ADD0CF84E8BD23054A83B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB93649BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D8BD02851C2FB632864165FCA4920 46548.pygtex) [263] (./_minted-Tutorial/FA6B767638A94C23AD0E7E718EA9F2B0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F9633BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AA72E956B557A0745C07301394654629543DFECA235A69AE23006BA05B 4EB70.pygtex [264]) (./_minted-Tutorial/96CF6391E5068D8E84EDAEEE6F6DB70A9543DFECA235A69AE23006BA05B 4EB70.pygtex [265]) (./_minted-Tutorial/43EC7DBFBCAE4E8B197BA170F7FE7CB2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F55F80E3D84EDCE0B63B5BCEC4E927ABD02851C2FB632864165FCA4920 46548.pygtex)) [266] (./Tutorial/chapter_uniprot.tex Chapter 13. (./_minted-Tutorial/9F44B6472AF40E72394F44F9065D3E49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A668BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD6768BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6F95F555D5FF56504BCE05FDB71E3767BD02851C2FB632864165FCA4920 46548.pygtex) [267] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA6519182BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB52ADBD7A08C2F90E5BB486EDFA1FF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD69228BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D14BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C06BD02851C2FB632864165FCA4920 46548.pygtex [268]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A4517918BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09ABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF25628224669566ECC2CFEDC7429F829576A D0DC6.pygtex [269]) (./_minted-Tutorial/956383F4066B9E093C9D2E3843CA0220BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307BBD02851C2FB632864165FCA4920 46548.pygtex [270]) (./_minted-Tutorial/9AB12EEC55BEE868B932EF7EF12109CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B669566ECC2CFEDC7429F829576A D0DC6.pygtex [271]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC783BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF9BD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20DD2D91201FBA08EE81FE73D557B622BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 363--364 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/30A3D5D1EA4F73DD0984EDFDDAF9090CBD02851C2FB632864165FCA4920 46548.pygtex [273]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 407--408 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E59BD02851C2FB632864165FCA4920 46548.pygtex [274]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A8669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/64ACD8E8EC2C5F323A9D84639080EBCBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0947A460CB4FBD78843CCF1E91E5FAA2BD02851C2FB632864165FCA4920 46548.pygtex [275]) (./_minted-Tutorial/4D3A0EF15DB535907DD377ECFBD51879BD02851C2FB632864165FCA4920 46548.pygtex)) [276] (./Tutorial/chapter_pdb.tex Chapter 14. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C22853BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E69085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C71BD02851C2FB632864165FCA4920 46548.pygtex [277]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA7388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A7F199DA98E2BD66B92177EFD14AA59ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB8231BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879EBD02851C2FB632864165FCA4920 46548.pygtex) [278] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D176BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A5BD02851C2FB632864165FCA4920 46548.pygtex) [279] (./_minted-Tutorial/684AC0ECE33D6BA84F0409CE669AB136BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA4BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.022pt too wide) in paragraph at lines 262--264 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) [280] Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D979BD02851C2FB632864165FCA4920 46548.pygtex) [281] [282 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB247BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E2727622BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A12BD02851C2FB632864165FCA4920 46548.pygtex) [283] (./_minted-Tutorial/8A579A2F82E38AFC725C7AD02B2F5D57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/38F92E91F7EF83579513DC2A23D231DCBD02851C2FB632864165FCA4920 46548.pygtex) [284] (./_minted-Tutorial/35E34E333445AAAA4E33570211335BA5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2470AECC1DA459F7A1ACC68FCD911B1BD02851C2FB632864165FCA4920 46548.pygtex [285]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC88098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB12492BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76657140082404C594EE786B642215C3BD02851C2FB632864165FCA4920 46548.pygtex [286]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254CBD02851C2FB632864165FCA4920 46548.pygtex) [287] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B128BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B3BD02851C2FB632864165FCA4920 46548.pygtex [288]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF231899BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0B35B80BBDE5AE1373CAE9105C01A624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC2663BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA39BD02851C2FB632864165FCA4920 46548.pygtex [289]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E667BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/866FA21894DE0E73CE09F7F50E59FDC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2CF9B1EBC15ECA1536AFA86FAF01899BBD02851C2FB632864165FCA4920 46548.pygtex [290]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE729029ED6ABA2E38F17FAA1C60732CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8BB12A44CF293B1BF656E236EFE0BE12BD02851C2FB632864165FCA4920 46548.pygtex [291]) (./_minted-Tutorial/F0EFB999D116D041397B95C62B2EED29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FE5531F727D4D28736FC18DF8A430EBBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E045C9432637E8C515E37CB4917FD57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD9DB5C434FCB2537E43EF340112BD08BD02851C2FB632864165FCA4920 46548.pygtex [292]) (./_minted-Tutorial/C1D5880B46A9CAEDCEB7F545F21B98CBBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.2397pt too wide) in paragraph at lines 1070--1074 \OT1/cmr/m/n/10 Missing atoms and other is-sues can cause prob-lems when re-bui ld-ing a struc-ture. Use \OT1/cmtt/m/n/10 structure[]rebuild[]test$$ (./_minted-Tutorial/BD4323A41DFED2A7E4CD261AA65F95EDBD02851C2FB632864165FCA4920 46548.pygtex) [293] (./_minted-Tutorial/6395F38A139598C6CC297CDBA73A8A43BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D2C13C2AA9395E0B1E4F1DDC801798BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12E711A2CBFD0B046AA026208A117C1E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/813FE78A3F8D8E46F06FF71539F000E69543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/CD78F368EB103F71947A3184BB62B46F9543DFECA235A69AE23006BA05B 4EB70.pygtex [294]) (./_minted-Tutorial/8E34478E945971E05C77F0A0E8C1B9D89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0D3FBB23D21A6A468370D56058193010BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBA5405CCC4A3178ADA49DA358246C819543DFECA235A69AE23006BA05B 4EB70.pygtex [295]) (./_minted-Tutorial/DE601B1883F045FBEE1B28168CFF0CCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD606A07E346D24D5D31174E036406399543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [296 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1293--1296 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1293--1296 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . (./_minted-Tutorial/BACD9263B6DB9FE9B9C8FA59C017D190BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2AECB4AED1E5DFDC387B42EF509CC3F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D3E5D8C6C6880A4C1D7DC0DEE7DC0C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/815743EBD76EB14B6A71E1A4AE6433A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B285099D410967E19F3165C7B5395544BD02851C2FB632864165FCA4920 46548.pygtex [297]) Excluding 'htmlonly' comment. (./_minted-Tutorial/5DFAFA7DE84292336F50FFB5DD8AD22A9543DFECA235A69AE23006BA05B 4EB70.pygtex [298 <./images/phe-pairs-3pbl.png>]) (./_minted-Tutorial/ED5201F27B6F2CC7A881AC419DF87B5E9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (214.06847pt too wide) in paragraph at lines 1459--1475 [][] [299] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/10BEDFA26FE20B8B11FC832131C1705EBD02851C2FB632864165FCA4920 46548.pygtex [300]) (./_minted-Tutorial/12DBC9D94FB0B4B78A481C6C111C6709BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/895E3343902EFB0E5475667B01C4B691BD02851C2FB632864165FCA4920 46548.pygtex [301]) [302] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A9BD02851C2FB632864165FCA4920 46548.pygtex [303]) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5DBD02851C2FB632864165FCA4920 46548.pygtex) [304]) [305] (./Tutorial/chapter_popgen.tex Chapter 15. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/331BEE386F268F55DE217F54E27EAB6B9543DFECA235A69AE23006BA05B 4EB70.pygtex) [306] (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [307] (./Tutorial/chapter_phylo.tex Chapter 16. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC5671669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE15844BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4ADBD02851C2FB632864165FCA4920 46548.pygtex [308]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6621A01BB423374C8FC608E267D0EA7DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [309] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 183--186 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [310 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/D713148814BA75DCDEB1C77B12674D9BBD02851C2FB632864165FCA4920 46548.pygtex [311 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/69333D76AA5D97D8BF9E95DEECEEE2B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/456F5679DCD4FF740E7A110889D86573BD02851C2FB632864165FCA4920 46548.pygtex [312]) (./_minted-Tutorial/2B3BFA62F3A778E4818959ED3E8AD3EEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A1E441205EAE188E6F4319753E3982D3BD02851C2FB632864165FCA4920 46548.pygtex [313]) (./_minted-Tutorial/C3E382424C6F17EF8DB95D08D8AC9FEEBD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. [314 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 481--488 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [315] Overfull \hbox (13.48741pt too wide) in paragraph at lines 536--539 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [316] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [317] Overfull \hbox (15.04868pt too wide) in paragraph at lines 705--709 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . (./_minted-Tutorial/20AACD5E58630D4B64529F3A1ACD8119BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EB4CA3626331FD00CE50FECC3590095BBD02851C2FB632864165FCA4920 46548.pygtex) [318] (./_minted-Tutorial/0702C9875263768417DD3ED2EF78755EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D2BD02851C2FB632864165FCA4920 46548.pygtex) [319]) [320] (./Tutorial/chapter_motifs.tex Chapter 17. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AB934E1AD357BE20BA1F223A29AE486ABD02851C2FB632864165FCA4920 46548.pygtex [321]) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FD74672EB5AFA6884F8D499FED8275BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5192D61C78C1A3C85C526E8A343B2D1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/780058F0AF2BD1667406082AF62B622BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1AA6C485CC966DC35852E2E56CB690CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/114CF431D502A1771C56B9B94DC877C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/24FEE45DD1241EADADB4B18D6AD262D2BD02851C2FB632864165FCA4920 46548.pygtex [322]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F61243192022BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) [323] (./_minted-Tutorial/9E99895E29C3369AC7D546CE91F1E814BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/558D14A34910CE0F1CE14AC8AB8674D1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CADD201D618F08B90493FFBD7C160BD1BD02851C2FB632864165FCA4920 46548.pygtex) [324] (./_minted-Tutorial/09688621FC642BD071CE8B14DE593BDABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B6055E3EDC34B64895539DAABF61813BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB2476BD02851C2FB632864165FCA4920 46548.pygtex) [325] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C6BD02851C2FB632864165FCA4920 46548.pygtex [326]) (./_minted-Tutorial/15622530AF3C0273D3804ACCBDE86922BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D14669566ECC2CFEDC7429F829576A D0DC6.pygtex [327]) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA693ACE906F3FCF6D9B4DB2D841E650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF92669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4910FFD3FDCDF743F7F37BE10B04F706BD02851C2FB632864165FCA4920 46548.pygtex [328]) (./_minted-Tutorial/AF4CF0FDC0B4EBF46401E9953A293EF5BD02851C2FB632864165FCA4920 46548.pygtex [329]) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FDBD02851C2FB632864165FCA4920 46548.pygtex [330]) (./_minted-Tutorial/46FF514D13E6C4030C26EC4EFF8CFAFDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AEBD02851C2FB632864165FCA4920 46548.pygtex) [331] (./_minted-Tutorial/47B231A79951117DFE8D7B369F5A0EDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C378BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7EDF217AC860547FAAC456716F6D6BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F8669566ECC2CFEDC7429F829576A D0DC6.pygtex [332]) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E44669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909FBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 692--695 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B84BD02851C2FB632864165FCA4920 46548.pygtex [333]) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37411E4F0C2364A16573A917D3E3918DBD02851C2FB632864165FCA4920 46548.pygtex [334]) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA7669566ECC2CFEDC7429F829576A D0DC6.pygtex [335]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4293959D98D2DC2DC0CE6CA72DFD5D5CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EFBD02851C2FB632864165FCA4920 46548.pygtex [336] [337]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F26406BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA782BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE0BD02851C2FB632864165FCA4920 46548.pygtex [338]) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EBBD02851C2FB632864165FCA4920 46548.pygtex [339]) (./_minted-Tutorial/5CBFAEFFA194A41048B5DAFCF4C98812BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E225BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EABD02851C2FB632864165FCA4920 46548.pygtex [340]) (./_minted-Tutorial/6E38B20582EF8FBF09C0864F13C6172DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CEF4EF7AD2559AA1A840E9E5F4F1E33EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D1D6AE9E3598EC28091C3C92ADBF6891BD02851C2FB632864165FCA4920 46548.pygtex [341]) (./_minted-Tutorial/FAE6232F395C5C5C9B45609DB98ABE96BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA161BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E25BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A5092BD02851C2FB632864165FCA4920 46548.pygtex [342]) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C86073BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE970BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF4BD02851C2FB632864165FCA4920 46548.pygtex [343]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E322BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C9BD02851C2FB632864165FCA4920 46548.pygtex [344]) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD7261603BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA2473BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21BBD02851C2FB632864165FCA4920 46548.pygtex [345]) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA16BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/868ABF9ABD2736A12F423306646D7706BD02851C2FB632864165FCA4920 46548.pygtex [346]) (./_minted-Tutorial/912C817861E626118AB2FA06F12910B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F4472669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB41BD02851C2FB632864165FCA4920 46548.pygtex [347]) (./_minted-Tutorial/19ABF38625E3814B04BE6103C2AC4E6ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E422EFFCDD59E6EF6FB3B86E29D8F0B7BD02851C2FB632864165FCA4920 46548.pygtex)) [348] (./Tutorial/chapter_cluster.tex Chapter 18. [349] [350] [351] [352] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [353]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [354] [355] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [356] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [357] [358] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C239049267861739BD02851C2FB632864165FCA4920 46548.pygtex) [359] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE22BD02851C2FB632864165FCA4920 46548.pygtex) [360] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D41BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF8895055BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEBBD02851C2FB632864165FCA4920 46548.pygtex [361]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [362] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C175BD02851C2FB632864165FCA4920 46548.pygtex) [363] Overfull \hbox (106.77225pt too wide) in paragraph at lines 654--656 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEABD02851C2FB632864165FCA4920 46548.pygtex) [364] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8D3928D79091BFFA7AFB6D6F35A52C7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4D59CC328F454A26A4BE9F91740D961CBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.39864pt too wide) in paragraph at lines 739--750 [] [365] [366] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FCBD02851C2FB632864165FCA4920 46548.pygtex) [367] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E0BD02851C2FB632864165FCA4920 46548.pygtex [368]) (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA8504BD02851C2FB632864165FCA4920 46548.pygtex) [369] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [370]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--119 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [371] (./Tutorial/chapter_graphics.tex Chapter 19. [372] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A09543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D8169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B0359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA79543DFECA235A69AE23006BA05B 4EB70.pygtex [373]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E9543DFECA235A69AE23006BA05B 4EB70.pygtex [374 <./images/plasmid_linear.png (PNG copy)>]) [375 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/ECF4549C3ED9BED5D89616D96689FF279543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F6FC21242AEF7E7CBB38249DA932A7359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D8509543DFECA235A69AE23006BA05B 4EB70.pygtex [376]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B949543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C9543DFECA235A69AE23006BA05B 4EB70.pygtex [377] [378 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/67B3F646AA5F8690151428081229D39B9543DFECA235A69AE23006BA05B 4EB70.pygtex [379] [380 <./images/GD_sigils.png>] [381 <./images/GD_sigil_arrow _shafts.png>] [382 <./images/GD_sigil_arrow_heads.png>] [383]) Excluding 'htmlonly' comment. [384 <./images/plasmid_linear_nice.png (PNG copy) >] [385 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA899543DFECA235A69AE23006BA05B 4EB70.pygtex [386]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A9543DFECA235A69AE23006BA05B 4EB70.pygtex [387]) Excluding 'htmlonly' comment. [388 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex [389]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [390] Excluding 'htmlonly' comment. [391 <./image s/three_track_cl.png>] [392 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F7284149779543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F9543DFECA235A69AE23006BA05B 4EB70.pygtex) [393] (./_minted-Tutorial/362E20D07B620886BB870C2BA76C6D809543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C9543DFECA235A69AE23006BA05B 4EB70.pygtex [394] [395 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A759543DFECA235A69AE23006BA05B 4EB70.pygtex [396]) Excluding 'htmlonly' comment.) [397] (./Tutorial/chapter_kegg.tex Chapter 20. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C71BD02851C2FB632864165FCA4920 46548.pygtex) [398] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B9543DFECA235A69AE23006BA05B 4EB70.pygtex [399]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C95669566ECC2CFEDC7429F829576A D0DC6.pygtex)) [400] (./Tutorial/chapter_phenotype.tex Chapter 21. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8DBD02851C2FB632864165FCA4920 46548.pygtex) [401] (./_minted-Tutorial/1742F69ECDDF3F5D15E6B5DBFEFA9721BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB44BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB081BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDF372B652AEF5EA570E28DA8244BF8BD02851C2FB632864165FCA4920 46548.pygtex [402]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D7206BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579DBD02851C2FB632864165FCA4920 46548.pygtex [403]) (./_minted-Tutorial/AEDB3BBBBA5C2503EDA86617E0872188BD02851C2FB632864165FCA4920 46548.pygtex [404]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E6BD02851C2FB632864165FCA4920 46548.pygtex)) [405] (./Tutorial/chapter_cookbook.tex Chapter 22. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB9543DFECA235A69AE23006BA05B 4EB70.pygtex [406]) (./_minted-Tutorial/CA0835D76EF6887731674D8AB555091B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E57164BD02851C2FB632864165FCA4920 46548.pygtex) [407] (./_minted-Tutorial/C6B2C783E94EA95E84DF3F108F727AD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/19A3D00CDA3CDDA100F55F41BCAAF54F9543DFECA235A69AE23006BA05B 4EB70.pygtex [408]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F649543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A02396470619543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B9543DFECA235A69AE23006BA05B 4EB70.pygtex [409]) (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC655419543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE4087939543DFECA235A69AE23006BA05B 4EB70.pygtex) [410] (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA29543DFECA235A69AE23006BA05B 4EB70.pygtex) [411] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF6418319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F354509543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 454--458 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [412]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA5569543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A9543DFECA235A69AE23006BA05B 4EB70.pygtex [413]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C9543DFECA235A69AE23006BA05B 4EB70.pygtex) [414] (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F89159543DFECA235A69AE23006BA05B 4EB70.pygtex) [415] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC407373679543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C6B1FCFF3C4616196F6CE060D97D2587BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B69543DFECA235A69AE23006BA05B 4EB70.pygtex [416]) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A09543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582EBD02851C2FB632864165FCA4920 46548.pygtex [417]) (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/474B445E26A3CD55A1BA5820E4D03C7DBD02851C2FB632864165FCA4920 46548.pygtex [418]) (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B802763B27D7694A759DB2EBF16EF098BD02851C2FB632864165FCA4920 46548.pygtex) [419] (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A63052669566ECC2CFEDC7429F829576A D0DC6.pygtex [420]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B79543DFECA235A69AE23006BA05B 4EB70.pygtex [421]) Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [422 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [423 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [424 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/90D5858002A1CEE4D697634EADDD2CA49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/6655B5CD97C33186A22E6897501301FF9543DFECA235A69AE23006BA05B 4EB70.pygtex [425]) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [426 <./images/dot_plot_scatter.png >] (./_minted-Tutorial/601CCA4B782F1DA528DB81B0248031959543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment.) [427] [428 <./images/SRR001666.png >] (./Tutorial/chapter_testing.tex Chapter 23. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062144BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0444BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907344BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D44BBF456F55B5DC060035246D76 9EADB.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [429] (./_minted-Tutorial/3FB66F60C11B0B8CE53B4D1228F39850669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED44BBF456F55B5DC060035246D76 9EADB.pygtex [430]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A79543DFECA235A69AE23006BA05B 4EB70.pygtex) [431] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E9543DFECA235A69AE23006BA05B 4EB70.pygtex [432]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F444BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA299543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B82977119543DFECA235A69AE23006BA05B 4EB70.pygtex [433]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) [434] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B0345644BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC4344BBF456F55B5DC060035246D76 9EADB.pygtex)) [435] (./Tutorial/chapter_contributing.tex Chapter 24. [436] (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A3644BBF456F55B5DC060035246D76 9EADB.pygtex) [437]) [438] (./Tutorial/chapter_appendix.tex Chapter 25. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A4628599543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B429543DFECA235A69AE23006BA05B 4EB70.pygtex [439]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C429543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A203BD02851C2FB632864165FCA4920 46548.pygtex)) [440] [441] [442] [443] [444] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_pairwise.aux) (./Tutorial/chapter_msa.aux) (./Tutorial/chapter_pairwise2.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (445 pages, 3170897 bytes). Transcript written on Tutorial.log. pdflatex --shell-escape "\def\bpversion{1.83}\input{Tutorial}" This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) \write18 enabled. entering extended mode LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (./Tutorial.tex (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/preprint/fullpage.sty) (/usr/share/texmf/tex/latex/misc/hevea.sty (/usr/share/texlive/texmf-dist/tex/latex/comment/comment.sty Excluding comment 'comment') Excluding comment 'rawhtml' Excluding comment 'htmlonly') (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/minted/minted.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fvextra/fvextra.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/lineno/lineno.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/shellesc.sty) (/usr/share/texlive/texmf-dist/tex/latex/ifplatform/ifplatform.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty)) (/usr/share/texlive/texmf-dist/tex/generic/catchfile/catchfile.sty (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty)) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifluatex.sty) (./Tutorial.w18) ) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 70. (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx))/usr/bin/pygmentize (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_pairwise.aux) (./Tutorial/chapter_msa.aux) (./Tutorial/chapter_pairwise2.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (./Tutorial.out) (./Tutorial.out) Excluding 'htmlonly' comment. Excluding 'rawhtml' comment. [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.m ap} <./images/biopython_logo.pdf>] (./Tutorial.toc pdfTeX warning (ext4): destination with the same identifier (name{page.1}) has been already used, duplicate ignored \relax l.39 ...}SeqFeature objects}{38}{subsection.4.3.1} % [1] [2] [3] [4] [5] [6] [7] [8]) [9] (./Tutorial/chapter_introduction.tex Chapter 1. [10] [11] Excluding 'rawhtml' comment. Underfull \hbox (badness 10000) in paragraph at lines 120--126 Underfull \hbox (badness 10000) in paragraph at lines 132--134 (./_minted-Tutorial/default.pygstyle) (./_minted-Tutorial/C3217FD04973F24516F5530BB525A22CBD02851C2FB632864165FCA4920 46548.pygtex) [12 <./images/biopython_logo_old.jpg>] Overfull \hbox (2.99303pt too wide) in paragraph at lines 185--187 \OT1/cmr/m/n/10 Check the built in doc-strings (\OT1/cmtt/m/n/10 from Bio impor t SeqIO\OT1/cmr/m/n/10 , then \OT1/cmtt/m/n/10 help(SeqIO)\OT1/cmr/m/n/10 ), or see [][]$\OT1/cmtt/m/n/10 http : / / biopython . [13]) [14] (./Tutorial/chapter_quick_start.tex Chapter 2. (./_minted-Tutorial/C083BA757ADC0A392BD8802D1351612CBD02851C2FB632864165FCA4920 46548.pygtex [15]) (./_minted-Tutorial/BCD1E3D53103B8919C8BBE66D33535ABBD02851C2FB632864165FCA4920 46548.pygtex) [16] (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/33F85FAC7266F854F2B0213346781855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57D5D2D450B93D59CC2D6708C6BA430BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9951EE2B2EB57108F1B91BF42B5EF26DBD02851C2FB632864165FCA4920 46548.pygtex [17]) (./_minted-Tutorial/D0C141F7F69A52FF8D2723831BF439F2BD02851C2FB632864165FCA4920 46548.pygtex) [18]) [19] (./Tutorial/chapter_seq_objects.tex Chapter 3. (./_minted-Tutorial/048D805D0CE39D0271B0A9A9F6FA0B90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CCFAD09A7C678CC6F23FB63113DD1EDCBD02851C2FB632864165FCA4920 46548.pygtex) [20] (./_minted-Tutorial/FD65D36A7B14289ADEAB241851842BCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0F44B540F3531194878FC29AF017902BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/739024CAA2FC886FEC674E3B4C3FD3A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EB307D8D2C6B186F102975D2F777C5C8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/504E820336D4D852A5104D8E97622504BD02851C2FB632864165FCA4920 46548.pygtex [21]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6C027F180664948287C5ED0C06A70E36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8900FA9A050CA74204F5DCB8D9386420BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A43D1A8AC729BFB659D75BFD070C79ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/732D927996C79742AC990312B3D6EEB0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36BB9CB69ABA7149C7050E321F74C270BD02851C2FB632864165FCA4920 46548.pygtex [22]) (./_minted-Tutorial/14DC45CA9BEAFF3B8A49C8E43A9FF33CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FC9049D1029A23D48B33F9D862ACC47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E62329AC6ED4D8F7B1EF4988F8DBA19FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/008EC869056581873654FF9A8E92D394BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/457BF67E0722BB5B93A17BD27C0B6D8DBD02851C2FB632864165FCA4920 46548.pygtex [23]) (./_minted-Tutorial/21058E2884DE0E2797798658CEC2E54FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34FD0122B81370E5F3563284D60CFF17BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54827F8BB70B416D99923FF5088CCC0BD02851C2FB632864165FCA4920 46548.pygtex [24]) (./_minted-Tutorial/427B060556C1BB93F326E658CF6C8753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/692203B43955DEEBA597180E090EBEBDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4AF1735B84470B955325263082B386BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F7FFCC027B254744B7B47314F48923FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/186028EBD7A9B4B4276808BC5B218A70BD02851C2FB632864165FCA4920 46548.pygtex [25]) (./_minted-Tutorial/2F42D08D321C7BC408E4704103B70F2EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/544C1E23D35FAC62FBE120AA24D6EF82BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A487EC21D16913E80A948528AA61CD64BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7BC83BB268F7BA2D207FDE001034CF98BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59D2BC7361BC3147180163BF1D4DDE79BD02851C2FB632864165FCA4920 46548.pygtex [26]) (./_minted-Tutorial/087889BE640F25A1E1D26EB819B55990BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C387354CBEC6317F42CD9F596E775BE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3542F02D57EFCE9A6BD62C8FAB75CE3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F712265A78CB2524ABF9371BE2F3874DBD02851C2FB632864165FCA4920 46548.pygtex [27]) (./_minted-Tutorial/3A75E7306D7D2D81DE0C37038600A10ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/06DBC59F2EAD33E7A951888537876615BD02851C2FB632864165FCA4920 46548.pygtex) [28] (./_minted-Tutorial/4393B8540CDD633A481E29B1CF252CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7F9F7641B195E2CACA3F77158DBE190CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04626286E6AB345CB89BE7B7A049C338BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F2723D89FDBA794E82A8285BABB369CB669566ECC2CFEDC7429F829576A D0DC6.pygtex [29]) (./_minted-Tutorial/64147FAF6F5C5028B073B3C809EE3E84BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFDB859800920408E228736AD921B5DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D95D20C3283ADEDD76DAB3382BB1B040BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA99EB190DCB9061B7FD403ECDCEE451BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F5B125A1E250BEBA411CA3B2BBF3EDDDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/39AA48793A64869F7458C1A2A0D69D2EBD02851C2FB632864165FCA4920 46548.pygtex [30]) (./_minted-Tutorial/29E9F3CE64EB99D132246C3633BA375CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/394CF49B3AAB621203EE87F2BD334CC4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3F2DB933A33BDAA3DB2299F2701B61CBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC4041D75FEA645B55AE8CD6DE45F64EBD02851C2FB632864165FCA4920 46548.pygtex [31]) (./_minted-Tutorial/43513B61020FA6436B91828F06EC1F8FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE692511644781A937B5C5E0025044B3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D388BA3E0B925CD1E55F633CBAD85C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/651C905E140A6022D7D692602C70F0A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4307A980AB242F22FB1B0952E3FD37C0BD02851C2FB632864165FCA4920 46548.pygtex)) [32] [33] (./Tutorial/chapter_seq_annot.tex Chapter 4. (./_minted-Tutorial/032C91EF2474FD3535629DC0CDABC809BD02851C2FB632864165FCA4920 46548.pygtex) [34] (./_minted-Tutorial/28ED5ED993E569AC59FDA480CD731BBCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD6AF21FB49ADADD3E9DF52EA341F92CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9404FB47549766BD16858F97A6D407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9321587EBA597104E435182128B200FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FC566F5A2B47EFD3D63327C15F7FC2BD02851C2FB632864165FCA4920 46548.pygtex [35]) (./_minted-Tutorial/510764EE0BB38AD6C688E71989677507669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/885E3C393ABBD6448EFA8A6D8D849822BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C60AA1EB70D11A096523A07FC1BD2085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7D4386614F3407AC9AFEDB894B0987D9669566ECC2CFEDC7429F829576A D0DC6.pygtex [36]) (./_minted-Tutorial/B659A3B495F4BF5A9945B83B9A29DC2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20D2783513E8123B155B9FE0B3FE7B4A669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/86FA506E88E30EB82E7186A57112C98CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D582F58715BB8D12B0A5A9CF9631A27CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9D6C80CD8B460806CB6E7C2935EA601BD02851C2FB632864165FCA4920 46548.pygtex [37]) (./_minted-Tutorial/332D9C95CC14B124A8528A76F4917ECEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/925BCB3D0BD30380832BA5F2C6367AD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20F0AF7810B74883E42451F5810F926BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/47F0F8DD59EC4A71D5CA336E217F0C0DBD02851C2FB632864165FCA4920 46548.pygtex) [38] [39] (./_minted-Tutorial/AD47AD29D6F7927F9406BE5609676388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A89E686BA7930FBF8AE5CCC27E1AC5BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD11055284C1F524585846BFB03F6EE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C597DC49857D56C7E140B1D795218F3BD02851C2FB632864165FCA4920 46548.pygtex [40]) (./_minted-Tutorial/EF871449F651FE5E7DFD84165065B14ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9ABE11BA111CDBEACB55DC5424AC66A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D86C559003980DC8749AF92530435DFDBD02851C2FB632864165FCA4920 46548.pygtex) [41] (./_minted-Tutorial/1C0A562378DEEE8E210765437B3E1700BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7BB516F80A4A8F5C291ABDF3B6E0B49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C737C9C2EF139AD4F965B3AC1FF72C75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/411A7DB0F7208D21C6099C86249233F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0C3ED75879971F09D72A92585654A32CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4ED33BCBC94515EF1D3FF0CB0F2ACE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1432CF672342B0A065BD2202A12E3920BD02851C2FB632864165FCA4920 46548.pygtex [42]) (./_minted-Tutorial/3B61DDBFCC5B04C6BD9F6ED183CD312DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5039524AFDCC2184E0FA37B45448443DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93B3AF8F7193FF3944CC29E4FE0F9689BD02851C2FB632864165FCA4920 46548.pygtex [43]) (./_minted-Tutorial/B952BEC5DDC5176F8F8F8984196831F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D16AA28F327A9B07E6AE64737A6B2340BD02851C2FB632864165FCA4920 46548.pygtex [44]) (./_minted-Tutorial/C08741A8063662E3CF1313052B7EA7A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/83934A12FA213409ADDBED937D121BEBBD02851C2FB632864165FCA4920 46548.pygtex [45]) (./_minted-Tutorial/7693A79AF1B5C3B342CEF51858B48A85BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C59A3BD3577D6DA7BB95528A68C9B311BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7FC68DDC3F22A92C79064A5F631D2457BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4EE1174D845FF0CABBFC735D0B5DF82BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/890A92414EE9EE5FB3B2F7B834307EDFBD02851C2FB632864165FCA4920 46548.pygtex [46]) (./_minted-Tutorial/CC2666A1113601FF5DADD7ED2118A3FEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E29BCA3E51B6B75E0E5EFF1718501669BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D20811F7EAA2FB2ED0A37B2C0F1B24D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E92A933EB86A743F11CDB887CD2A9C1BBD02851C2FB632864165FCA4920 46548.pygtex [47]) (./_minted-Tutorial/675833B93A69F5DE13F680548E25EA3EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A8312A90F6B97A21EE1619F9A898ED36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68AB1E9E397375F82B6F3361E55900E7BD02851C2FB632864165FCA4920 46548.pygtex) [48] (./_minted-Tutorial/B650815DDD2D74A390771EC1DCA2F0EFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9A2AD70EFB345CF0A1412F8838EE8843BD02851C2FB632864165FCA4920 46548.pygtex)) [49] (./Tutorial/chapter_seqio.tex Chapter 5. (./_minted-Tutorial/3F38D5012926DD7C810DA2383F53D498BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CE17C15EEBC1BDC9846A29B8188EB6789543DFECA235A69AE23006BA05B 4EB70.pygtex [50]) (./_minted-Tutorial/357B0F655AFAF3808FD8EE23EE5009549543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/480025795249845BAA7F48D4A45ADB21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F164035E9D5F8C01F84F5F95E2B166F19543DFECA235A69AE23006BA05B 4EB70.pygtex [51]) (./_minted-Tutorial/C82398A4A04383A063D2E648811230529543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1A4F5B10F895EA1A0898B313C8FE3AED9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/665A7700DAC7A651C288CFBC04910736669566ECC2CFEDC7429F829576A D0DC6.pygtex) [52] (./_minted-Tutorial/3FC3FD6D12B3257730F3B4F11F7F82E99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/8C2F2A27559FC0864F47BBE543950C26669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C1B7B447DBB266302BC82D7DBD1622219543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3453EFD7B001ACCBD0126A13C98BAA4F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/23C65980427B41C7D9E32947CD41FD829543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36073AAEBADCD344208056C9868E001CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32EC540B3F53C56F8F39A2A185A32CE6BD02851C2FB632864165FCA4920 46548.pygtex [53]) (./_minted-Tutorial/3B09F0463D35461C42D2272763E734519543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/16EB556A216CBBE3D3F735350EA21A2A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1A3FE258B41FCC45D4A8272B13EC395669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD9EF2BC42CEF4E413923F9BFFE1BE07669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/58A82383AA9DEBBEEEC6694BA2DE777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9562C263804C6DD613F075A435553A9FBD02851C2FB632864165FCA4920 46548.pygtex [54]) (./_minted-Tutorial/5654C63CA8B2C75821B4DD795E1D9C91BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1525A6F338DC70B7A056F15305A9579DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DCDC3EB1E5C136F423AC65A1907BE6B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/23394A4616015FFE4619934E98424178BD02851C2FB632864165FCA4920 46548.pygtex [55]) (./_minted-Tutorial/48D36449ADA742065AC871DB512A14FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7160C98DFF3E9F14B8FDC3EDEA5AAADEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E26B09583F35CC794E34E0D3C822C09BD02851C2FB632864165FCA4920 46548.pygtex) [56] (./_minted-Tutorial/A06B859656EACE1EB197B276B0CAD4769543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5B68AB5634E46F0A59E5C238174AC4F0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AAC02B6C28E92C88B051BB2DE451DBD89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FECB9DCFA3C63121DB586752E4215990669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/CC27A8BEB077BCA7346A8D13F39867D79543DFECA235A69AE23006BA05B 4EB70.pygtex [57]) (./_minted-Tutorial/AE8667CEAACFF0F40839EE86774DD05D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/6467B5574DF68CEA13D016BEEC8841A49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3D2A207C38AC647D99F5A8861A9D1AA6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/DDD2E1D663317F4FFB7F8B7F03E4989FBD02851C2FB632864165FCA4920 46548.pygtex [58]) (./_minted-Tutorial/2EE890D1737C8A159C79BA4FCA81BB03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77FD1FB1550DD72BE3E8CFAC5C21C7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/022009B5C6117EE88C29BE7A45D87CF6BD02851C2FB632864165FCA4920 46548.pygtex [59]) (./_minted-Tutorial/FE4CF732C73126A3874795838D95FAB5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/55430EAFE498E385842834603E0B8C869543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB89543DFECA235A69AE23006BA05B 4EB70.pygtex [60]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E83669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/74E272C92C546FD61FA6D3DA5C178893BD02851C2FB632864165FCA4920 46548.pygtex) [61] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [62]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 849--854 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 892--895 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [63]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [64] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 46548.pygtex) [65] (./_minted-Tutorial/9CEF7BF9B2634ACBC930BA5EB6DD73429543DFECA235A69AE23006BA05B 4EB70.pygtex [66]) (./_minted-Tutorial/AC02E3950380715FC960C04EF317D69F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1C65F538FA7F22F7BB5183FC1553A0C6669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/935F773BF84C3BF326F4BA093FEC79D4669566ECC2CFEDC7429F829576A D0DC6.pygtex [67]) (./_minted-Tutorial/C194E2231D844AE7D0223173D2A899919543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/10CB116B7358444BA68AFA046B5B84D59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/29D12D495374A5A8C37AEB7083851DEABD02851C2FB632864165FCA4920 46548.pygtex) [68] (./_minted-Tutorial/920133226A22EEB682D854077D7FB78FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [69] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1350--1352 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [70] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1394--1398 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [71] (./Tutorial/chapter_align.tex Chapter 6. (./_minted-Tutorial/3ADFB33A8FCD44DE0B5C01507B2DB238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25A6E63137B6A56CD2D73764BCE1E544BD02851C2FB632864165FCA4920 46548.pygtex) [72] (./_minted-Tutorial/D13F0042F125CA05626436DE4E8CB781BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2DB00FB61E886C9B2B0C32167865EF74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0949AD3DC6BE9CCF58F64F79BD4915A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CF32FADC31B097962A862D90D8A10CBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/903AB6690A1CF4AE727DC1FFB77A1C15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6F33B32BDC9680C9C7D7040612986506BD02851C2FB632864165FCA4920 46548.pygtex [73]) (./_minted-Tutorial/5F6577782E5DE79D2397B15BF86DC967BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07DC41A8BF287DA498DE4B15959D18BBBD02851C2FB632864165FCA4920 46548.pygtex) [74] (./_minted-Tutorial/591BBA1E8577010030620B01E5A14F20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB5982C8C32C47C82ABE174DA3544818BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2AEA73DD0A6E98B0116831C28909C61BD02851C2FB632864165FCA4920 46548.pygtex [75]) (./_minted-Tutorial/64BF6D35A03F70AEAAA2AAA3DC43503EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CBD23C79E3C74FF315A3AB96291C072CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/550CDC6F594FE8F9C8698B9498651D1FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C3B7BF91745CF80C21DDA7BC7E12DB9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D369F36288FDAE66507B7EA3133785BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/275C57CA9346FD92D66ED772EFB638D5BD02851C2FB632864165FCA4920 46548.pygtex [76]) (./_minted-Tutorial/E351517D2F72634807B0BA082864BC91BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/561499D273F7482F80B85971281528A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F8F8BF3E533C10411B330D0DFBBAEDBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (39.79793pt too wide) in paragraph at lines 303--304 [][]\OT1/cmtt/m/n/10 alignment2.sequences[]\OT1/cmr/m/n/10 , and if they are eq ual, by com-par-ing [][]\OT1/cmtt/m/n/10 alignment1.coordinates []\OT1/cmr/m/n/ 10 to [][]\OT1/cmtt/m/n/10 alignment2.coordinates[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/FFF39C1BDE890CFD0D421309D7984FE9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/94DE849C111B89EAF838DA335BBAF476BD02851C2FB632864165FCA4920 46548.pygtex [77]) (./_minted-Tutorial/EF8DD639E0B998522A0CCE5992B06FFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EFE3503086B619AD8E4D3CDE2157BB92BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/189516A17EE4564FFF9585613681ECABBD02851C2FB632864165FCA4920 46548.pygtex [78]) (./_minted-Tutorial/C6DB00074C37AA3A343241C7A25F8C48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A18B67253A310A659816946E20BE7953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C2BA4F675E7D3F80C73C1FC12B124E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BE9C889E033D5EBCC58AA22DE23A73A1BD02851C2FB632864165FCA4920 46548.pygtex [79]) (./_minted-Tutorial/7D0BA7CE3F074B380509C5718A93E555BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72E54CB8027D30B56F048D9BB0D4B8A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FA0C2F12873C34FFB4AEBD61E0691477BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F1427CDA782B7144A8EBFF22527912FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7FCEB2243EF9A554817F810B090D8B1BD02851C2FB632864165FCA4920 46548.pygtex [80]) (./_minted-Tutorial/76E34587E6003DC67C174EEC524C4088BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BF95AC10B0E3B6757FAD7C8076C4317BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5821BC1C27000ECB009BBA0C76C836CCBD02851C2FB632864165FCA4920 46548.pygtex [81]) (./_minted-Tutorial/FCF2AE05D74D27A241E13170CFA42D6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/727B246DA4EC05B845383788E75A74DDBD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/6625CF78F73663DAA9EAD5F94CA7F09CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B61C21FD4FCD600A92C640255AEC19E4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6D7600C21431793B09B1445F3A714A5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72CCEF720EA6C136F734C715ADE5D584BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CE5E2A26CDD0636AB39B8066B992C33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/135C4B907D639EE153F66AD086FAB9B9BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/1F25F002C64691EAC8F06C6A94F725ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6D493E8CA48305C711FA03FFB282583BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E5063A0500138E66FD3E42A6E0C9FA3EBD02851C2FB632864165FCA4920 46548.pygtex [84]) (./_minted-Tutorial/1B43BDD39D94F9C28C02B03683B294D7BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (17.52367pt too wide) in paragraph at lines 727--1 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 122835789:122907314 ) (./_minted-Tutorial/7728ACBB8B5654A283BAC5E395F18EFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/65029EC2DE0387CBC1E35DD57E5037FCBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (17.52367pt too wide) in paragraph at lines 768--769 \OT1/cmr/m/n/10 This shows that nu-cleotide range 32:344 of ex-pressed se-quenc e tag DC525629 aligns to range 111982717:112009302 [85] (./_minted-Tutorial/4EEFD900807408EA076A3B9A9EA19BA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16E885E4228A1D53A85034B247975B7C669566ECC2CFEDC7429F829576A D0DC6.pygtex [86]) (./_minted-Tutorial/580FE58D8556F89B4F9DAB0B87E3CB6DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/436183BFDCF16E9CD994EFC472B940F4BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/02A14522C76BFFA1B6703CE73CEB4FE4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3168C611E2DFD6FF95EFCF8DD8AC500ABD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/0D8823DC13281FA67190F84B2EB65487BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DABC9E3F5430B52B4495D933CEF8F977BD02851C2FB632864165FCA4920 46548.pygtex) [89] (./_minted-Tutorial/63E9C7C15D3D496819075F363F942676BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2CA86AB1748972B28293A90E94331AFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/93389450EEC92A30A6EAD14CB609C12EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/326D8AE82DD364BB2AE47D3268F235E0BD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/BA1C75B95D0577519E26FA1234C0E78FBD02851C2FB632864165FCA4920 46548.pygtex [91]) Overfull \hbox (47.19006pt too wide) in paragraph at lines 1079--1102 [] (./_minted-Tutorial/F3C6459BBEE5DC58BA23DE6A902E861E669566ECC2CFEDC7429F829576A D0DC6.pygtex [92]) (./_minted-Tutorial/878C4A71864137A879F515402C152953BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62FDEB3CA937C176A55D32E8E2D9734FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/652288688656D87DB2236C858CA5E234BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/02ED2ECCD74F4EE93C5BD73ECF98808EBD02851C2FB632864165FCA4920 46548.pygtex [93]) (./_minted-Tutorial/F72FF9290B96E9DB4BB47406647CD586BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/620D3E672393822494756E9230009A53BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9E9D51005B371CD3068E46CFFF5138ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/27810C4F2B279E7D09594E917E7CCC5C669566ECC2CFEDC7429F829576A D0DC6.pygtex [94]) (./_minted-Tutorial/408828C89C3A93995AAF8919261A3BACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72457E1B58E712485EE91BE4473EEE72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB98E799197F765387B6A45A09FAA7E4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E15CE8A0C57207AA19F76AD8E491A47BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/088B23A633BB93F3628BB91E22FA9C32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9FECB08222E65B8690849E14245AD70BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D7CAF6F4125F840746A040D87B213078BD02851C2FB632864165FCA4920 46548.pygtex [95]) (./_minted-Tutorial/13FAFA72DE7E5D7ED5C7AA146C87E07C669566ECC2CFEDC7429F829576A D0DC6.pygtex [96]) (./_minted-Tutorial/FCE46CA6ACACF0C7944504F6C593F092BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F582FFD514E469F0BCC94B0A8D6C2309BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6C6E1CD361994D53909B5E92EDCC3A2ABD02851C2FB632864165FCA4920 46548.pygtex [97]) (./_minted-Tutorial/6B6B2C99C0A1F58F9A0A4D856A12EB29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FF08D4C80088C9A776F6CA0B6D13CDA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7525AB42EC6D0D322D22333D6E0DB4C6BD02851C2FB632864165FCA4920 46548.pygtex [98]) (./_minted-Tutorial/F06485BF4AECFA0C2925D97B9BBBBFCCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71FC072DD12D6A49A5EF04056D641289BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0C4B3DD5091108A53F462038C0BF984BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E5CFE89E2460A5F7AEA9A9A70315A745669566ECC2CFEDC7429F829576A D0DC6.pygtex [99]) (./_minted-Tutorial/3145318078A1E0D11EF08F2B4A723DF9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/6BEDCFEC52171C194CCBEEE68336B6FEBD02851C2FB632864165FCA4920 46548.pygtex [100]) (./_minted-Tutorial/728D95FF1157A4F55E0F89EE37FBB3DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/775FBC2022BDA37BFA4EB2AB71CA857ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFED1C90C7E7C1ACD1F2455F0B1EB130BD02851C2FB632864165FCA4920 46548.pygtex [101]) (./_minted-Tutorial/4031E6CD0032524E67FFDDFB760A32C3669566ECC2CFEDC7429F829576A D0DC6.pygtex [102]) (./_minted-Tutorial/DDA66B46BA334A6C95DED4D77AF3A329BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D49B53CB216BC60B4A0CD93F8EDCEEFEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B67982D457FD8E29E4C09FB1A86B6B5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AAF8B775C65E63C6DEA2CF99E4CF3F5CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C52714D3F31A23FF97AE13AC68F31D24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B1A4A6B67A42A8FE1F47A03C39D8C2BD02851C2FB632864165FCA4920 46548.pygtex [103]) (./_minted-Tutorial/32B0268F696E6C906B39B8A7E2EADB99BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/369365DB6BB86DD5F99CDDDCBE808FC7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3DFC00B619541BFC22DB2A1F9E1CF3F1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B418F5413E3E5967675F1EE20E43E7D2669566ECC2CFEDC7429F829576A D0DC6.pygtex [104]) (./_minted-Tutorial/E7CA8E49B48EDEAC89645C5D46367209BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BF0EFC3BBA49964C1F7EDC699CA2119BD02851C2FB632864165FCA4920 46548.pygtex [105]) (./_minted-Tutorial/710584AB2A17222A6CF044216E625547BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F0E6F76CD168A7DA467A15173D3E5F5FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2C7D1C8BB3FFCAE7F757F20452F57398669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F7D955447EE56C5213D504995DA81512BD02851C2FB632864165FCA4920 46548.pygtex [106]) (./_minted-Tutorial/4275ACEB46197BFA7CBB55DFB23D04F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7ECD6774A96C15E49BF845A3F32E9792BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E3F3096732803EAB55BEB5C85E00158BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D0CA54BA1AC51140D944EC7677AB40ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FCA7B705B226BD00CEBA6B5CA464C90BD02851C2FB632864165FCA4920 46548.pygtex) [107] (./_minted-Tutorial/991497AC1F8BC8EB3BC0932103D72E97BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F3A6067477F91454C0E0F897247238A9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAB65899C8C61CAE9A5B9F57B0525168BD02851C2FB632864165FCA4920 46548.pygtex [108]) (./_minted-Tutorial/4176F2D72DD806E2581563C9A3E1CCF8669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/E7795BC7D9C9EEDA96F7F0ACE547D6A8BD02851C2FB632864165FCA4920 46548.pygtex [109]) (./_minted-Tutorial/F479B578897BBBCA13291638972D27D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/70D9A814BC91183C4203F2C91A9F5D18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BB9243FFB4F82E108CA4783B9AE90032669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A79FD4B98960A552D11D76D39107647EBD02851C2FB632864165FCA4920 46548.pygtex [110]) (./_minted-Tutorial/35219A367A7A259D653DB851AFF9B48BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E8940648A6DC5BE55245ED0695D6637BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36B05D091F3889C47C41E8035C57ACCBD02851C2FB632864165FCA4920 46548.pygtex [111]) (./_minted-Tutorial/C7841EA697DC62B8874776CF6589B339BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/01DB3E327B7A6B94CAC76D2A55FF51D8669566ECC2CFEDC7429F829576A D0DC6.pygtex [112]) [113] (./_minted-Tutorial/97B71D65044A8A79ABF94F73EAFCEEA0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/10F25524E3AEE86E3E204995105A190ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3202D4E9772EE38E2013380B2E2CC181BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08CF1EF07A3F38F868150C9856B58A27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6E8B87BC559E608D255ECEC23FB5033BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B02B23920569460C1CB82D1FCF7BF6B9BD02851C2FB632864165FCA4920 46548.pygtex [114]) (./_minted-Tutorial/50ECFF8668DB07517383C44AABCC8F2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2C72F0FFD36515704CE3627577398079BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E5C95FE7BAA0B71FB579FCFAD90A7EABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AC9AE3BAD46A3283D7695A8A1DFC09CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/608C2857C3DA290EF766A8CEF7B1C7B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCD1D44140BADB1AF9FB5D8E5554370DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B145C500B6E80787AD14F38D64D583D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5E41F1911035A7C9C91D8D3584522777BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (66.10475pt too wide) in paragraph at lines 2400--1 \OT1/cmr/m/n/10 Confidence val-ues for the pair-wise align-ment are stored un-d er the [][]\OT1/cmtt/m/n/10 "Confidence" []\OT1/cmr/m/n/10 key in the [][]\OT1/ cmtt/m/n/10 alignment.column_annotations [115]) (./_minted-Tutorial/7BD0A13AC34B05F6B26F4E5A3DE9CAD5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/490600366C0690E5A4119EE69F1A27BEBD02851C2FB632864165FCA4920 46548.pygtex [116]) (./_minted-Tutorial/AA2DF31C3E608D48FACD9B1AD6A3B06DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA18A90574233A7CBD7AC58CEE8C61ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C4EE37E97FADDD20B90D67D355ABC641669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/466D9AC63E30EC1D8DBB385FDDE97605669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9EFDBE406FBBC44613EA7FE6429D79CF669566ECC2CFEDC7429F829576A D0DC6.pygtex [117]) (./_minted-Tutorial/9A57704BA82726E81B0CFAC8EC274F18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/970B10888A855C998FC6B51F7B24852BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C9D0266C5AC74051B0CE621CD4A4DFBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9B6E2D243CC026BFB3F3EC39E26649ABD02851C2FB632864165FCA4920 46548.pygtex [118]) (./_minted-Tutorial/876138142A523ACF7D2168D57A36547C669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8A2B8E693CDDB40736BBBEB205FAD998669566ECC2CFEDC7429F829576A D0DC6.pygtex [119]) (./_minted-Tutorial/F0EF92601DF394F0DE666A27F8EA38C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB568F215EFD0BAF6D3AB0AED2E3568FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6E86846A6EEB5463DCE1D426E20D18BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7AACEF698A7ECEA3201959C460F7C449BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD72B9B4FB0A7A55B3D4358101869C38BD02851C2FB632864165FCA4920 46548.pygtex [120]) (./_minted-Tutorial/42385B036BF17C722FAD3F83E75FDEF4BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (0.18794pt too wide) in paragraph at lines 2685--1 \OT1/cmr/m/n/10 Here, the writer makes use of the in-for-ma-tion stored in [][] \OT1/cmtt/m/n/10 alignments.metadata []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 alignments.identifiers ) (./_minted-Tutorial/A711A2B68D61BDEC7BBF208D12A5E99ABD02851C2FB632864165FCA4920 46548.pygtex [121]) (./_minted-Tutorial/A5E9CB9B5E078AE40453E67976FBFFB7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F8AB36DAF4F80C7F9570A5A27E5CBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/A221309DA1262965A6A47038C07CA1EABD02851C2FB632864165FCA4920 46548.pygtex [122]) (./_minted-Tutorial/03997BF8FD904516364706538520D638BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8B9AA9FE7614ADF0166372B2B4DCBE98BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2E092FEC403E36D654CD1C513AC61BEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1602FA8DDE44CF495CA71021E8A69CA4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEC68A2971DD620A61F610A3EB178532BD02851C2FB632864165FCA4920 46548.pygtex [123]) (./_minted-Tutorial/B3AF874327BA15EBE6204D91C0D86CF7669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/617E2070639B6FAA65FFAE9505A68098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32B286EC4D6B81356503CD173A5CF440BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FFB280D587B0F04991BA484540291F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DBB25FD6EFAF4F04B1C523503FD7F57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7D2D9F2132871FD986A19CAFEF99AD9669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/25F14621C45419CA1F5D3183667F338DBD02851C2FB632864165FCA4920 46548.pygtex [124]) (./_minted-Tutorial/924ADD068BEF8F0614EDD05997B9249DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (38.57419pt too wide) in paragraph at lines 2940--2941 \OT1/cmr/m/n/10 in [][]\OT1/cmtt/m/n/10 alignment.query.annotations["hard_clip_ right"] []\OT1/cmr/m/n/10 (or [][]\OT1/cmtt/m/n/10 alignment.query.annotations[ "hard_clip_left"][]\OT1/cmr/m/n/10 , (./_minted-Tutorial/9474707530175BC7B9D6A1D03533361EBD02851C2FB632864165FCA4920 46548.pygtex [125]) (./_minted-Tutorial/121ED15AC63942C5E8C155D208F51642669566ECC2CFEDC7429F829576A D0DC6.pygtex [126]) (./_minted-Tutorial/44C53D5554120E7C471E54177E855AAABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/473C2F0DACB920D96F956D9EC1E0FE2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C672D7F97D9560C4165396EE0AABB2FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E8B29E8871EDF193B23B50B7F8E78B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AEA5ACF2CDA6FED4928E102348916BFCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EC0AA256D9EAEE293C008EDA1843C94BD02851C2FB632864165FCA4920 46548.pygtex [127]) (./_minted-Tutorial/2C4E6A03B034FAA4C45E9D84BB3CCD85BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3F1B3C24801F420BC846C7C6EFB2F160BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex [128]) (./_minted-Tutorial/FA4FFD0DB7DAF8EAF7DDF9EC40FBF9CDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C68F3814A4AF124F08223E08EAB5EACBD02851C2FB632864165FCA4920 46548.pygtex [129]) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C46E00AFDD445BF5A1696DA110EC1108BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5D6C1752DC3E67EFB4B1F35AE1FE9CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/66E5C3A06978A0FE5189F36167EC3560BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDE2E897AFFF16770CB3BDE90724144BD02851C2FB632864165FCA4920 46548.pygtex [130]) (./_minted-Tutorial/6252059FEB1C539AB3AA84065D1AFE0A669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D1ECEEC0CDB23D95023740F189D293D6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/829F30DD660CB5F31B0BB2E8EF830166BD02851C2FB632864165FCA4920 46548.pygtex [131]) (./_minted-Tutorial/865853EFB9A9F2444191804BDD976FE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46D2E859D898B3FD9CDBF6F46910A518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61A566C18C28E8933ABF3876588877B8BD02851C2FB632864165FCA4920 46548.pygtex [132]) Overfull \hbox (20.18835pt too wide) in paragraph at lines 3330--3331 \OT1/cmr/m/n/10 The same ar-gu-ments can be used when writ-ing align-ments to a n out-put file in PSL for-mat us-ing [][]\OT1/cmtt/m/n/10 Bio.Align.write[]\OT1 /cmr/m/n/10 . (./_minted-Tutorial/B66E52A450DAB10C11EF0A5303F7F66EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/75A887FC47BD51521208CEC8CD530989BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B3446A67A6D36BD7649B7DA288A73602BD02851C2FB632864165FCA4920 46548.pygtex [133]) (./_minted-Tutorial/6AF73C9E0BDB5FC4193DF4ABFE090E4CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC47399FD605CA3F8836E32997DFBD1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EBC50F8A4A84EA141473F0B681CE103EBD02851C2FB632864165FCA4920 46548.pygtex [134]) (./_minted-Tutorial/8B79D88CC108A51F0F80C33707F28F17BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C1F549C9C2DA082C13B1BFC78B689FA3BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (30.38152pt too wide) in paragraph at lines 3454--3455 []\OT1/cmr/m/n/10 To write a big-Psl file with Biopy-thon, use [][]\OT1/cmtt/m/ n/10 Bio.Align.write(alignments, "myfilename.bb", fmt="bigpsl")[]\OT1/cmr/m/n/1 0 , (./_minted-Tutorial/DB4A558C022A90213DAB447D381A2ECB669566ECC2CFEDC7429F829576A D0DC6.pygtex [135]) (./_minted-Tutorial/6A346D8618DC3432DE9566F9215CECE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/89A48A5075DC87C268A946A0C95240FABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex [136]) (./_minted-Tutorial/BDC663A31E94EAB00717271E001B32C9669566ECC2CFEDC7429F829576A D0DC6.pygtex [137]) (./_minted-Tutorial/97D9AC3C79900370497414083DEB2D76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F14B11D4C5AEFC47BBFC6FBF8352CC20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2115B439B9C7613ABE3C048C7F77E511BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (21.6891pt too wide) in paragraph at lines 3610--1 []\OT1/cmr/m/n/10 The "[][]\OT1/cmtt/m/n/10 q[]\OT1/cmr/m/n/10 " lines show the se-quence qual-ity, which is stored un-der the "[][]\OT1/cmtt/m/n/10 quality[] \OT1/cmr/m/n/10 " dic-tio-nary key of the[][]\OT1/cmtt/m/n/10 annotations ) (./_minted-Tutorial/DA5833B89F52A7B4A2B9B32D40B54EA3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/452401475A94573BF37D7D123698A53CBD02851C2FB632864165FCA4920 46548.pygtex [138]) Overfull \hbox (1.04709pt too wide) in paragraph at lines 3654--3655 \OT1/cmr/m/n/10 To write a com-plete MAF file, use [][]\OT1/cmtt/m/n/10 Bio.Ali gn.write(alignments, "myfilename.maf", fmt="maf")[]\OT1/cmr/m/n/10 , where (./_minted-Tutorial/4A087A9D83F47C007944C81E5F701759BD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/B2EBB3A8D801374C6400A39E9710C3E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A9CB551F030A4F90B8B7BFF2B326EF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CEAA559B7186E2C8E02813D13980A48ABD02851C2FB632864165FCA4920 46548.pygtex [140]) Overfull \hbox (5.88144pt too wide) in paragraph at lines 3775--3776 []\OT1/cmr/m/n/10 To write a com-plete big-Maf file, use [][]\OT1/cmtt/m/n/10 B io.Align.write(alignments, "myfilename.bb", fmt="bigMaf")[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/96732D1FD6A8A472AD4BC4FB4E609A49BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/92EE0FCB2E3CBC30A200F4F5FE5BEDBA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9585E934C115EF3B41C1E16EAAFFA2B6BD02851C2FB632864165FCA4920 46548.pygtex [142]) (./_minted-Tutorial/118275EA6694D0B766E9BD4F4D97FFF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20992EB20E2B00D18C30E5283B8F8620BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04A222C3764F8292CD85E13113B2E355BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF2CB3A0227D1D6D123733A23C3502FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/134808D506F7EBEDDC21AEFB8B1C1AD4BD02851C2FB632864165FCA4920 46548.pygtex [143])) [144] (./Tutorial/chapter_pairwise.tex Chapter 7. (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAAB94B5EBAA776852055B38D072679EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/59C4861F9CFA406680FB108F7638DB18BD02851C2FB632864165FCA4920 46548.pygtex [145]) (./_minted-Tutorial/5214A9AAFC8A40430707E3A6B6DC0D01BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/32985CB8E0884A44019C3AD3006E3F9FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2422230E37F8F87089496D212F415650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/385490B66B3AC742DD6257196C784FE2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7C1865F3A0AC01C199018850C2CBF24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76E331C5187C259B69198E91FC4AD112BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF7EA4D0E316F88B3A609CF62C6CD357BD02851C2FB632864165FCA4920 46548.pygtex [146]) (./_minted-Tutorial/A564D138D2F52B4E2858B9D14814966BBD02851C2FB632864165FCA4920 46548.pygtex) [147] (./_minted-Tutorial/B0937117DDA6BB67D133C99E550AD5BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9C81CE609C3C74FF6DDE53A3528FDA3ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/0A885050DEEEFE55D8800A555FD32426BD02851C2FB632864165FCA4920 46548.pygtex) [149] (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) [150] (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 397--401 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. Overfull \hbox (32.852pt too wide) in paragraph at lines 466--510 [][] (./_minted-Tutorial/DCCEE6D592009E7B8E7DE81563D8D4CEBD02851C2FB632864165FCA4920 46548.pygtex [151] [152] [153]) (./_minted-Tutorial/98D9A5E0CD47E306CA0DA2AFE878514ABD02851C2FB632864165FCA4920 46548.pygtex [154]) (./_minted-Tutorial/FBB2100548FA74FADE3EAE28A2DE1911BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C9DFA2EBF75572BAC340EC89D69B3D4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B788F0FBC120E74A47922EA232EB8671BD02851C2FB632864165FCA4920 46548.pygtex) [155] (./_minted-Tutorial/27E1D19EBBD5F4A0476AAC2BD7950A46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE91DA6F7C30BDD779CED0A91AB75DAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A59C6CF4854355E98CC312686998A38BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/ED55B2BAF04247D4F10E951590AA5077BD02851C2FB632864165FCA4920 46548.pygtex [156]) (./_minted-Tutorial/BA096BCFB5777C90CA38AE388186DAA6BD02851C2FB632864165FCA4920 46548.pygtex [157]) (./_minted-Tutorial/9FF41FE72E025C3EC8E41470B268E105BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCBF8AC8128D86DFE3607A8465EC034BBD02851C2FB632864165FCA4920 46548.pygtex [158]) (./_minted-Tutorial/96A1DC106863D5F4D96B9200B7B5BE06BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7323803F0E90CDA6FB16D10E868318BBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FBFC10402209A281F117C1A7C3D2057DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/04CF4E50F88DE1F6947064E1188A1BABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/88E3C6FE8CD1E52180656649B61F8CBBBD02851C2FB632864165FCA4920 46548.pygtex [159]) (./_minted-Tutorial/3352A1628AB7C0D638BB368952D0DEDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/842D73F66680850822D006857AE71FE7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2D6A808BF4EE516297A6B3C245DD911BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F18349AE10604FDE1CA7EB0C07144518BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E4DBF912323F10D195B3AA3AEC63F53BD02851C2FB632864165FCA4920 46548.pygtex [160]) (./_minted-Tutorial/5E9D6563DE4DEF6BBF8840F7693212F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E19493E35A1B212412F37B3A7079D5ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/79A21B2A8F8F6AD65F6B1F3793D80A86BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6463A9B121897EB3CE22238D6527FE06BD02851C2FB632864165FCA4920 46548.pygtex [161]) (./_minted-Tutorial/CC9E9C07C5DC6BDB4071B2A0EA825278BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFDD135A81C509EC7F35C141D2CAD51BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E6126AB026498E1F63D451B1D4658AA8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/902EEC7A1CB3027146D926159B4B460ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2BD903EAA6E97263AEFF453922CD6CD3BD02851C2FB632864165FCA4920 46548.pygtex [162]) (./_minted-Tutorial/0CFA6BD42F59D71E296FF2027BC6CC94BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/007A62C4B86AFB9385A7D86241664707BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9316B67A34DB9BF6C888C15D5F0F593BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BA3947FA62C1EB757A2C26D0BF0AC4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBBB23BD87A1FCE1DBDC131052E5E921BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/957759CC14C7D6EB3A9289AC275F965FBD02851C2FB632864165FCA4920 46548.pygtex [163]) (./_minted-Tutorial/E342F3558CF8E1CEC0DA0A4E3B4A0159BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4FA358182F6BF8C8A2D01A4AB6C958DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (44.90923pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 Here, [][]\OT1/cmtt/m/n/10 background[:, None] []\OT1/cmr/m/n/1 0 cre-ates a 2D ar-ray con-sist-ing of a sin-gle col-umn with the val-ues of [] []\OT1/cmtt/m/n/10 expected_frequencies[]\OT1/cmr/m/n/10 , Overfull \hbox (13.77237pt too wide) in paragraph at lines 1152--1153 \OT1/cmr/m/n/10 (in-ner prod-uct) cre-ates a ma-trix of ex-pected fre-quen-cies where each en-try con-sists of two [][]\OT1/cmtt/m/n/10 expected_frequencies Overfull \hbox (211.48245pt too wide) in paragraph at lines 1152--1153 []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1 /cmtt/m/n/10 expected_frequencies[^^MD^^M, ^^ME^^M] []\OT1/cmr/m/n/10 is equal to [][]\OT1/cmtt/m/n/10 residue_frequencies[^^MD^^M] * residue_frequencies[^^ME ^^M][]\OT1/cmr/m/n/10 . (./_minted-Tutorial/C9E8E52F2D57AA9166F02E5B946490F8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4CCE619EDA1B5136415DCBC81E02F94ABD02851C2FB632864165FCA4920 46548.pygtex [164]) (./_minted-Tutorial/0B051755682044B54FDC8CE728FD23B5669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/659317FF2415828FBE0F4505ECB5B4E5BD02851C2FB632864165FCA4920 46548.pygtex [165]) (./_minted-Tutorial/60D893638743BD147116D13E00593D6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC6687367D9EC6B1C018CE84CA30555D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9AD9216297281F0858F16EA5C03B98AFBD02851C2FB632864165FCA4920 46548.pygtex [166]) (./_minted-Tutorial/CB8FA536E934FA2DC233E7FF52DEAED4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14104DE21243051DA2E8D004C5D1A9EDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C42B04C08C3B07CABB6D2D7AE1F1B6DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A6E4A89F3F3E07605D5B2BD57C7671CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1795B10D0BABDD4E83A8B6EBE5DAF8CDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/691C9A3D9A1EB52FAECF7E4C91F03BE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9A7868CC2484B4CFB34F94E7549F2519BD02851C2FB632864165FCA4920 46548.pygtex [167]) (./_minted-Tutorial/779CE460F4F768A71E6F35DDB7FDFA77BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9EF49B98A62C70CD81126514DF796600BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (19.80069pt too wide) in paragraph at lines 1380--1381 \OT1/cmr/m/n/10 In this ex-am-ple, the to-tal num-ber of op-ti-mal align-ments is huge (more than $4 \OMS/cmsy/m/n/10 ^^B \OT1/cmr/m/n/10 10[]$), and call-ing [][]\OT1/cmtt/m/n/10 len(alignments) (./_minted-Tutorial/F89522EF58FB067C6521C367C7134716BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76A8D90A1791A7B42DD5E6329FCCBE20BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/399250FB2BC395588B8004ACD928BE9CBD02851C2FB632864165FCA4920 46548.pygtex [168]) (./_minted-Tutorial/882BD2544386DECA236BF25C7DD64857BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22FCA15B328DDB0383F97012E3C1FA70BD02851C2FB632864165FCA4920 46548.pygtex [169]) (./_minted-Tutorial/DA98355B1CF48169F9C82F2DD1F86A29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/13D646E6B49807044DBDC43707A09846BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/467CA50C36874E405E988587FEC07686BD02851C2FB632864165FCA4920 46548.pygtex [170]) (./_minted-Tutorial/E4398C5237FE7113BC5A8DE3B0E138A6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E827958137C7E69DAEDB0C4151298E62BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A94C18D2207C354646F831D57FD85B35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/801A90831A5799E3FF1FC0A5E721F4F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4329189CC201D756D0770BD7596DF0D8BD02851C2FB632864165FCA4920 46548.pygtex [171]) (./_minted-Tutorial/0FE6E4AA3B9932059ECAAF000D2B335ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E006359914F4A2F87CC6BE376E4E5BB9BD02851C2FB632864165FCA4920 46548.pygtex [172]) (./_minted-Tutorial/E44672122CC05CB47AD10A19D652F781BD02851C2FB632864165FCA4920 46548.pygtex [173]) (./_minted-Tutorial/DF0F53F9E417CC5E3DE7A77007840AF7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0D981AA6FBDA65EF7598D9446CAD490BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/170B41004F15599FA3468CE46E0C5585BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (35.76202pt too wide) in paragraph at lines 1725--1 [][]\OT1/cmtt/m/n/10 PairwiseAligner []\OT1/cmr/m/n/10 class de-scribed above ( see Sec-tion [][]7.2[][]). The val-ues spec-i-fied by the [][]\OT1/cmtt/m/n/10 frameshift_minus_two_score[]\OT1/cmr/m/n/10 , [174]) (./_minted-Tutorial/9C680E660852DC23B54FAE3FACAE931CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BEDEB1E0209E6C09A0B1747245E6DA33BD02851C2FB632864165FCA4920 46548.pygtex Overfull \hbox (22.90215pt too wide) in paragraph at lines 1769--1 \OT1/cmr/m/n/10 This is due to a -1 frame shift event dur-ing trans-la-tion of the sec-ond nu-cleotide se-quence. Use [][]\OT1/cmtt/m/n/10 CodonAligner.align [175]) (./_minted-Tutorial/ED358F65899143A8C9C2BD533FBCB992BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DEE5ACDC4529864EB53E97C276F5529DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B42BF333D0818A27536BF9C3E60B86DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE6F9F5E53CD7E33BB3EB34479259508BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B5BC2DDE1D32E1F60B8EDEC763D06CBABD02851C2FB632864165FCA4920 46548.pygtex [176]) (./_minted-Tutorial/D74D5F09CEB9C29FD7B152A56BAC5CEABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/98DC2A4B7E45278A8B59A43E816DB897BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (11.49387pt too wide) in paragraph at lines 1909--1910 \OT1/cmr/m/n/10 tions per site (dN) and syn-ony-mous sub-sti-tu-tions per site (dS). These can be cal-cu-lated by the [][]\OT1/cmtt/m/n/10 calculate_dn_ds [177] (./_minted-Tutorial/60AFD6CEF624135FDFB352FB0261DE45BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/80F110C5D8FAD1898979F32619E5AB26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4DB4DC7F5A7830C22B1CDBAE4515CFCBD02851C2FB632864165FCA4920 46548.pygtex) [178] (./_minted-Tutorial/7B94E0EE4938A8FCA9BA75776BF6FBFABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B97288BF34F7AF5F3DB622A20FF46C98BD02851C2FB632864165FCA4920 46548.pygtex [179] [180])) [181] (./Tutorial/chapter_msa.tex Chapter 8. (./_minted-Tutorial/9CC7A6864E21FFDDB3F4D02F2870DF42669566ECC2CFEDC7429F829576A D0DC6.pygtex [182]) (./_minted-Tutorial/81FAFBAECB3A03B11080ECF19D4CCC80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31E7567531B3A1035700A1E555A47FC0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D2523B56ECD3F392CD3E37EEBE302AECBD02851C2FB632864165FCA4920 46548.pygtex [183]) (./_minted-Tutorial/AC12821BA0AEE8F48238EAC359A31077BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A6D29782988E1FB75F30F2D60AB93C4EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E48647CD11476AB33349258EA43C50F2669566ECC2CFEDC7429F829576A D0DC6.pygtex) [184] (./_minted-Tutorial/16CCFD1DA7A71D5F6D9A86870C560407BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0B89B536EECC0E9CC886A8B4CC9713EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EE5558D4A829B63692DC55F8215FD331669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/FA669D1E3279749AAAA27A72F3B44533669566ECC2CFEDC7429F829576A D0DC6.pygtex [185]) (./_minted-Tutorial/9119ACDDD7EFFD39008E7F98AB7BF756BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C54BE5D00F2871BB58E36C383B3B4DE669566ECC2CFEDC7429F829576A D0DC6.pygtex) [186] (./_minted-Tutorial/CE4E385956165A535376F6D73447D3F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F55715342346472744E837C465922E6E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/1B5E788850B45798FCA06125D5880A14669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/B913EFE8AC0AC995AF3DCCAC856FF020669566ECC2CFEDC7429F829576A D0DC6.pygtex [187]) (./_minted-Tutorial/5F9DFDCFBF42A04D6BD31E8E9638DA57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDB62F4C6418AA14588B7DBEA69D61C5669566ECC2CFEDC7429F829576A D0DC6.pygtex) [188] (./_minted-Tutorial/A8D0C008D3D8E2CB96D91B2A5FF2D318BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9458BC75C22971F0F7F09C79C7D6AFE0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEF99AFE39529F3F1A5EFC7A23714477669566ECC2CFEDC7429F829576A D0DC6.pygtex [189]) Overfull \hbox (5.54102pt too wide) in paragraph at lines 436--437 \OT1/cmr/m/n/10 ever you can't do that when your records come from a gen-er-a-t or/iterator. There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 444--449 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [190]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [191]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [192]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [193] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [194]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [195]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [196] (./_minted-Tutorial/57CFE9DC5CD81FB0596F85897E6DA692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [197] (./_minted-Tutorial/13CFE6D1070039CAFDFF56DF04368770BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD8C82261629F77671BA754C74700E87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/584F58A1C6A85AF94480529177AA7D3FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B2B320FCB1CB4E31AB099291F932EB0BBD02851C2FB632864165FCA4920 46548.pygtex) [198] (./_minted-Tutorial/9D45F62EAC81CD13AAAF3450CF3A232ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/340D58639C2681751BEF2047783DEEE9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F21E2E5C5DBD6EF9E6F640CC5F4C714BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/72F8B65B0D3D88C3B10844472B106E41BD02851C2FB632864165FCA4920 46548.pygtex [199]) (./_minted-Tutorial/070923CB2703E5E0E057E642A4BBBF6CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57DABAC595397F03A13BD4FDF5EDA15FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/58DE1694476DA2E216D59B45BB05C7C7BD02851C2FB632864165FCA4920 46548.pygtex) [200] (./_minted-Tutorial/421102D8AD818AF5ACDDF3088BC94F74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2E95BC5863623750A91BBE3F39CC619BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7036E919E25181C06CA4FE1AB45111CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E934A51665FDB7C86D79CF26E1D3355BD02851C2FB632864165FCA4920 46548.pygtex [201]) (./_minted-Tutorial/CC02B4199DEBDF02C873B29A4D23E2F8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA0C3D2760186CF61A1F541B6E07C05BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD48495FAB2341AA078121E9286C0717BD02851C2FB632864165FCA4920 46548.pygtex [202]) (./_minted-Tutorial/01E13C07FE452CF1FDB6A6A35FDCA3C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E3EA69F3BBE8D7A4714A13459DD7618BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF976D90D5CFB8FBE1740CE553C3DE82BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.15053pt too wide) in paragraph at lines 1256--1257 \OT1/cmr/m/n/10 two [][]\OT1/cmtt/m/n/10 residue_frequencies []\OT1/cmr/m/n/10 val-ues mul-ti-plied with each other. For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/666ED93D8D8EA6ECB692EA545A34C9BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex [203]) (./_minted-Tutorial/27194EF8B620D19B97A86FC4EBC01851BD02851C2FB632864165FCA4920 46548.pygtex) [204] (./_minted-Tutorial/5543453A39ABA62157B76DBB62BF3769BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex [205]) (./_minted-Tutorial/DCCFE080F632390BC5C8A4A75BFBDD23BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8457D1842F832E12A9AD5EADD8062630BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex [206]) (./_minted-Tutorial/3BD4CBE24FA7DB3D645FBBF99722FA4F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/9878C5723ABE83D5948A4EBBD103F2CA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5FE9E0DE95593B6491CC762F62613D36BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/92EB98E95BD8980B6AE82598444E9F00BD02851C2FB632864165FCA4920 46548.pygtex [207])) [208] (./Tutorial/chapter_pairwise2.tex Chapter 9. (/usr/share/texlive/texmf-dist/tex/latex/base/omlcmr.fd) (./_minted-Tutorial/A7706714F4982C826867A73C2B665ED0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/44E2C06C8661B128385CD75A7E7608AABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F120EF3444F3192D48657B4E52407017BD02851C2FB632864165FCA4920 46548.pygtex [209]) (./_minted-Tutorial/9AC50DD22A56E4DC2B26465D89DE35EABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFB7E0A19AF729834746B283E60F2091BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7DA73F8FE9E6D95C2255220886791B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E9F207F5DA488246642864EBF9EA466DBD02851C2FB632864165FCA4920 46548.pygtex [210]) (./_minted-Tutorial/15FD2886E49804AE97038F2733592C71BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D1D98CF394058EA9EB8F6FA3B0DB75ABD02851C2FB632864165FCA4920 46548.pygtex)) [211] (./Tutorial/chapter_blast.tex Chapter 10. Overfull \hbox (5.71313pt too wide) in paragraph at lines 43--44 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? CMD = Web & PAGE _ TYPE = BlastDocs & [212] (./_minted-Tutorial/A6D333F851BCB09A0C02030C1BC37AB1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69F91830197D9990EA9A0BD7D074EE21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00F087159F0534545C0B7288838BEF0EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8A150C3E431DF572EF74B2B19AB15AF8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDF7B3FB3DC9B4B3C157122F78C3F4EBD02851C2FB632864165FCA4920 46548.pygtex [213]) (./_minted-Tutorial/0E750E34F5C53FAE26988AF1CDC7FBC6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) [214] (./_minted-Tutorial/21FCFA3232935EE0DF07988BE50D1AEF44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/88BD5D9B190061FD4FD34D2573EE4792BD02851C2FB632864165FCA4920 46548.pygtex) [215] (./_minted-Tutorial/CF5D749C3878C5A1FD3C8C63CA51FD08BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C9558BD802C8764E46CF73625C14C204BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E34865BFB20F9D165069B84AE5218004BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0F63513A18DD0126288BC98B9F40394BD02851C2FB632864165FCA4920 46548.pygtex [216]) (./_minted-Tutorial/A614B982013DB6EC38FCADD82303A8BEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD49CD888784736545A3066AC257FBFFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B7DE908D2BB5BA4FD1BB179810D8D238BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/16EEC09BFB431080BCE9C5E6ADA5DAA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68259DF5B1930070C029D5A72D891A36BD02851C2FB632864165FCA4920 46548.pygtex [217]) (./_minted-Tutorial/0C1E2B9A587BB44A7E19E83A4E5B1924669566ECC2CFEDC7429F829576A D0DC6.pygtex) Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 476. ) [218] [219 <./images/BlastRecord.png>] [220 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 11. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [221] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [222]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [223]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [224]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [225] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [226]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [227]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [228] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [229] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [230]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [231]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [232]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [233]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [234] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [235] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [236] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [237] (./Tutorial/chapter_entrez.tex Chapter 12. [238] (./_minted-Tutorial/95F72AA1E59C898262005610BC25A6BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/320E9A38F759168BA03B078BD9CC013BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAEC2235DDE454C09ECEB0DF4CD26FB5BD02851C2FB632864165FCA4920 46548.pygtex [239]) (./_minted-Tutorial/BE69E60966963418560089D2DFFA721BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E8E7490F3E1B9120A0B1B53C024FA36BD02851C2FB632864165FCA4920 46548.pygtex [240]) (./_minted-Tutorial/90EE68BD33BA5A5CDDC15A58DE3769DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E05622F86D5C6456282864B1095B19CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/846A93AAA063B5CBA3EDEF3D5FC8C008BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474B6317DE32E44C65767FFD4D132892BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B7AA3167A6472C6C33ACA91F8E88FACBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DFC9B19D35F2D9482DE6B365FC35F6BD02851C2FB632864165FCA4920 46548.pygtex [241]) (./_minted-Tutorial/570A44C26E360300ABEECACE7E48FE7BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F74B27B285F0D0CC7E69CABE07232C68BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4E8F788B5B01D8C8A4DBF9235CB05362BD02851C2FB632864165FCA4920 46548.pygtex) [242] (./_minted-Tutorial/00763064983507F32B88C306DFA40494BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53F668B0CE9069489F6D35B114D072B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/49E5F2A1DFC2444E5A673AD6C6E3F19FBD02851C2FB632864165FCA4920 46548.pygtex) [243] (./_minted-Tutorial/46751534B93778AB6E7EE90ACA2EC1DEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C50C3FBF7BB51714D959B2E35A15830FBD02851C2FB632864165FCA4920 46548.pygtex [244] [245]) (./_minted-Tutorial/90B50EB67F311E9802115D3378F7F3A3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D4D148476913E81D469C49EC2ED2E4269543DFECA235A69AE23006BA05B 4EB70.pygtex [246]) (./_minted-Tutorial/7BEF78A395312D4138ADAAED85869FE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/01919CABECEE21D3FA5A6B7A01CCCB5EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0DD80468D8C175A94BC63142BD16EF1DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/414E52C4377A1D0E6A428B032A7756FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6109D29005C5EC9FAE01CDFBE62EF008BD02851C2FB632864165FCA4920 46548.pygtex [247]) (./_minted-Tutorial/A0ED7F47BA117071BA21263E7AF6DB27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3C5A1B892E98E1E6E8C179B5F465500ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/68622353B578A611D2F621023E3C4BD1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D3C77609B61D3F46B793852609D1E4A1BD02851C2FB632864165FCA4920 46548.pygtex [248]) (./_minted-Tutorial/01E1B282D67C006BF30065A545EABFB4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E02371BEF7596435E8F90267E0362E0944BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E0DB204F613774290A8485A084337CECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A760ECBEB3B2FD29A53BCA5D183DAFFCBD02851C2FB632864165FCA4920 46548.pygtex [249]) (./_minted-Tutorial/0E5336FE7E3A88121498608010025EF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B17732B358EE5D871A248019977CF38669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2186E927D5A018F8950E8A7D0F734E71669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4E46E525923D539FE28933C22912C4F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1516062A6E16A043D5996183E67DEB86669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C20FD6887ACA76A3A6BB41D0F8D1E49CBD02851C2FB632864165FCA4920 46548.pygtex [250]) (./_minted-Tutorial/898885F88FEAC697F30E8E063D95F24D669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/5A768DAE26A5087A2B94A01E741705DABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B89E703729CE0DB5EB3456180292FA1B669566ECC2CFEDC7429F829576A D0DC6.pygtex [251]) (./_minted-Tutorial/D6F6C0600C1A353DC53F7C5053F21845BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/42D56AFB832DDE5E3731A1DA56712385BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EF35C66998219AA15568E5FA366261EBD02851C2FB632864165FCA4920 46548.pygtex [252]) (./_minted-Tutorial/CD3676C48A9629929A55320028B512E5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9BFD2F013E1A1D8756C2BFF5B3706AAD669566ECC2CFEDC7429F829576A D0DC6.pygtex [253]) (./_minted-Tutorial/BA0AB018AAD76A735A66112724779B6EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/474ACCF7269CF6DA8C1148E094B63C80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/265BCBE09451F85D4BB86E81E6F3D4E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/077B6C28FFFD9E8EB72387BF7F1D9BF1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/444791288FF5BDC5902CCB9784A155F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B09039A2D5E19CEC9E137775753247BBBD02851C2FB632864165FCA4920 46548.pygtex [254]) (./_minted-Tutorial/8A37ACED6410F897928FCB7C50949E76BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E8409E14FB2D552933B09043928680F9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD7F3CF796C1A867CB155C96F23EEF1BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A31A48992D09DD96D61522A7043B6CD3BD02851C2FB632864165FCA4920 46548.pygtex [255]) (./_minted-Tutorial/2A4C90292B912D4CC89B37352989263BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4802D221A3EBE7AAC3E07CB05144CA27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F7C9857DB48F3111F31BB49EC39F2019669566ECC2CFEDC7429F829576A D0DC6.pygtex [256]) (./_minted-Tutorial/650077A39F2D52831A52D045B184B624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/17E5085C64881C08DC82C2B5573291F2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/076325C16F7C56460228C73B3147DF7A9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2018A02508D4B36EF0217BE478D18CE1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/67F7BC27D166185C4B7B9A9F270ACDA5BD02851C2FB632864165FCA4920 46548.pygtex [257]) (./_minted-Tutorial/F01452391D049758B3588D8F37184AA19543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/DB935BA8B2CE7FC7C166E4B75EBE6265BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/291147B743C75A3F4B2DE070CFA1B2D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57648E2674FE9BB727770109CA65C71ABD02851C2FB632864165FCA4920 46548.pygtex) [258] (./_minted-Tutorial/18B8A1741AF884D30B8BE92DFD650BAEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8778F0F3798A99FE0C3840234CAC2B5BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FAD1D32BBD3E6FC5FE31DBBF8029928ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/85AA5F6E67E515A70F5F0A4D9A0548C0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/24D6870F7CF00B7F93EF1F55424D4AD0BD02851C2FB632864165FCA4920 46548.pygtex) [259] (./_minted-Tutorial/50F11612D2ABC00C1DFEDBD9AAF8BB3BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CC25FFF338C00383DCB063570D88219BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E963D1B8D3330FC994CC39110B642038BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/574A29DDA761C1725F490FB0F1CD4EEFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6FD15C01D270A661A77854FF78F033B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5845916CE276A61945EF5849B982E8A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C29234A01846A769E0662D844733154DBD02851C2FB632864165FCA4920 46548.pygtex [260]) (./_minted-Tutorial/4DA8ECCF1EA4588537B571B9F46E13A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/83AF94F97D8DB6C14498938D53D9F761BD02851C2FB632864165FCA4920 46548.pygtex [261]) (./_minted-Tutorial/F84312826D2E2BBFA3208F42493E2349BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E0918D05D7A12068693442FD750C7FA9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A10F5BBA5C9ACB9164926A93053C9077BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E45AACFBE1E2FA38805A72A89828A00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D76169664531538D144C55FFC33571BBD02851C2FB632864165FCA4920 46548.pygtex [262]) (./_minted-Tutorial/FD60404C05CBEF7AE40C25F2F0EC251FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8322E0DFB7ADD0CF84E8BD23054A83B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0D86B77B8C40BC4335F18EE35CB93649BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37575ADC7CF832C14B5854633F9C88D8BD02851C2FB632864165FCA4920 46548.pygtex) [263] (./_minted-Tutorial/FA6B767638A94C23AD0E7E718EA9F2B0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7212F8F4D805E6009D8612AB61498E24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B038E9BC100BB2A231E2B4BF11B0330CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3256378680D2E01A0D283817FC4F9633BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6AA72E956B557A0745C07301394654629543DFECA235A69AE23006BA05B 4EB70.pygtex [264]) (./_minted-Tutorial/96CF6391E5068D8E84EDAEEE6F6DB70A9543DFECA235A69AE23006BA05B 4EB70.pygtex [265]) (./_minted-Tutorial/43EC7DBFBCAE4E8B197BA170F7FE7CB2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F55F80E3D84EDCE0B63B5BCEC4E927ABD02851C2FB632864165FCA4920 46548.pygtex)) [266] (./Tutorial/chapter_uniprot.tex Chapter 13. (./_minted-Tutorial/9F44B6472AF40E72394F44F9065D3E49BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DD1C7AE6EB54A3133F3D58EE95B3A668BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BB844FCBFB442A424E4ED0D244DD6768BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6F95F555D5FF56504BCE05FDB71E3767BD02851C2FB632864165FCA4920 46548.pygtex) [267] (./_minted-Tutorial/ADCE00FC778B0EA886D44F1AA6519182BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DB52ADBD7A08C2F90E5BB486EDFA1FF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C65ED72167AAF5D5730D19463FD69228BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CFBCB7DFF63857026EF72107C91C4D14BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D965DDAA766509A8449374C475416C06BD02851C2FB632864165FCA4920 46548.pygtex [268]) (./_minted-Tutorial/747E2FE5A2594F5385BB7437A4517918BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8837CDE38481CF679BB33997916F09ABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E15781AA166AC63C2DF3BCF25628224669566ECC2CFEDC7429F829576A D0DC6.pygtex [269]) (./_minted-Tutorial/956383F4066B9E093C9D2E3843CA0220BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BA8B23CD43F97133B0CE8ECD0A9462AA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/8B296BCFBFAA7137B45E8CB899424BE4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2EF087C5641CFFF6A40A4396FE9307BBD02851C2FB632864165FCA4920 46548.pygtex [270]) (./_minted-Tutorial/9AB12EEC55BEE868B932EF7EF12109CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E2B75EC45BA35CA8C7799FFAFE69A4DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1DE080CE5283B4D334F81719880190E2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6ED198EEC186F92A098C5692A874CF5B669566ECC2CFEDC7429F829576A D0DC6.pygtex [271]) (./_minted-Tutorial/F4AB180AFE85CC09CE3F73EE547FC783BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B1A88EF3A17DB1FA7EC5A60B27A37BF9BD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/454E46BC171F751C15F6A295F2284AB7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8DCADA174B7DBC35827913027E1507B4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/20DD2D91201FBA08EE81FE73D557B622BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (24.29903pt too wide) in paragraph at lines 363--364 []\OT1/cmr/m/n/10 If the ac-ces-sion num-ber you pro-vided to [][]\OT1/cmtt/m/n /10 ExPASy.get_sprot_raw []\OT1/cmr/m/n/10 does not ex-ist, then [][]\OT1/cmtt/ m/n/10 SwissProt.read(handle) (./_minted-Tutorial/30A3D5D1EA4F73DD0984EDFDDAF9090CBD02851C2FB632864165FCA4920 46548.pygtex [273]) (./_minted-Tutorial/950511DA0658C1A2824DF92F06F34BE8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6A833CD3DDDD6A4CCF169D082C63D87DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (65.93893pt too wide) in paragraph at lines 407--408 []\OT1/cmr/m/n/10 The same func-tion can be used to re-trieve a Prosite doc-u-m en-ta-tion record and parse it into a [][]\OT1/cmtt/m/n/10 Bio.ExPASy.Prodoc.Re cord (./_minted-Tutorial/DF2DA17EFC0F6336210C74066809B753BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9457A436D281E066D350873A88476E59BD02851C2FB632864165FCA4920 46548.pygtex [274]) (./_minted-Tutorial/5C1399E579A6AA8D432E509AE441C2AEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7528F52197E46B376DB12FB34672D7A8669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/64ACD8E8EC2C5F323A9D84639080EBCBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C8BC3187BF8F96BDF009A2CA8A95A3C3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0947A460CB4FBD78843CCF1E91E5FAA2BD02851C2FB632864165FCA4920 46548.pygtex [275]) (./_minted-Tutorial/4D3A0EF15DB535907DD377ECFBD51879BD02851C2FB632864165FCA4920 46548.pygtex)) [276] (./Tutorial/chapter_pdb.tex Chapter 14. (./_minted-Tutorial/D779A8F555F6BCC207B905D5D6C22853BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/946CAECCFDBF1349958F40A0FC03463FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2FDED7F9BEF9EA1F5CE28B11996ED43DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05714E0F28AC6B36B176161D8A9FA84DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3D3953EF520FE9546FC19DB705E69085BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E37E6F74461E0075B61AF24790D37C71BD02851C2FB632864165FCA4920 46548.pygtex [277]) (./_minted-Tutorial/32D78458130807D5C8DD536942BA7388BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49437C8CCF1C8D72B8DBA0CFE1DCB35BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A7F199DA98E2BD66B92177EFD14AA59ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57A82B690A435E6AD7DAD62778DB8231BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3AABC2CB1B50E66D5DBACF20EF52245ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C79D210A6D0E5501910FFF311063879EBD02851C2FB632864165FCA4920 46548.pygtex) [278] (./_minted-Tutorial/41FC845107E552AB47AA881B90236E18BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B41B5BFD7D85ED4E7E70DA059AE1D176BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36AD36AC9E663BF06BB871053927CDF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1BBCC7F8F1756C270C4D99E9F943A024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4AD3361A8DEC1848967C5C4904CBAA6BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8411ECFB826F8858D5702457B0FB9A5BD02851C2FB632864165FCA4920 46548.pygtex) [279] (./_minted-Tutorial/684AC0ECE33D6BA84F0409CE669AB136BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C85B5FA2C9BF8127C2FEFF62553FECECBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/05AAA27695D5E74A2F0C892230E4EFA4BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.022pt too wide) in paragraph at lines 262--264 \OT1/cmr/m/n/10 The over-all lay-out of a \OT1/cmtt/m/n/10 Structure \OT1/cmr/m /n/10 ob-ject fol-lows the so-called SM-CRA (Struc-ture/Model/Chain/Residue/Ato m) [280] Excluding 'htmlonly' comment. (./_minted-Tutorial/DCB043864D9F8E2B59DEBF1784B30CDCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B6B956752D54554859CB3FC041890BD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/958010CCD8250B2A6D359F037738B54EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69627B7F3108FCBC466F45AE8D24D979BD02851C2FB632864165FCA4920 46548.pygtex) [281] [282 <./images/smcra.png (PNG copy)>] (./_minted-Tutorial/13774A78311C8B2B99285E3D509AD855BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EC253507D414D1E9DDE9BC5CAF6BC78CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/69D3F9059506073A988980B78CEAB247BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5A42A68287048A843E1066F2E2727622BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22421A9A4B194CFEBFABE1E2DDFC8A12BD02851C2FB632864165FCA4920 46548.pygtex) [283] (./_minted-Tutorial/8A579A2F82E38AFC725C7AD02B2F5D57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C4346C691565244D87DFA5ED26B512E3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/38F92E91F7EF83579513DC2A23D231DCBD02851C2FB632864165FCA4920 46548.pygtex) [284] (./_minted-Tutorial/35E34E333445AAAA4E33570211335BA5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2470AECC1DA459F7A1ACC68FCD911B1BD02851C2FB632864165FCA4920 46548.pygtex [285]) (./_minted-Tutorial/874F41EC8F1C0D727A004EAEFDC88098BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/94A9BE470837AFDA4B8581B79BB12492BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/76657140082404C594EE786B642215C3BD02851C2FB632864165FCA4920 46548.pygtex [286]) (./_minted-Tutorial/17EB0A1D2812B68E199CC00449B9254CBD02851C2FB632864165FCA4920 46548.pygtex) [287] (./_minted-Tutorial/D94A742238FBA8E89BB46038CDBDEB90BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BFD7EDA2178705DA7C24F4D3735823EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/73DA0F97AF01C85175F4AF2DFAE2C6B7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E80E6D2D75417229F3B2B705315B128BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/618AFB68C3893C2A344D3A532D9BD99ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/82DD3285068398C1A65910EDE1BE970CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0799FD26AFF50D33D257B86E8D3E40B3BD02851C2FB632864165FCA4920 46548.pygtex [288]) (./_minted-Tutorial/2857EE83D7FCEE22018F0C0AD63239E0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/365D7E5A27BEEE6ED9265079DF231899BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0B35B80BBDE5AE1373CAE9105C01A624BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BDCD0910528B95EADEE1C7C6BD40AD3CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3A499902396CBA88B311EE3A93BC2663BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B2412D9441598FCD30172739CB3CCA39BD02851C2FB632864165FCA4920 46548.pygtex [289]) (./_minted-Tutorial/728242DAC9077785511462C5CD16E667BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/866FA21894DE0E73CE09F7F50E59FDC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D6328A6D8E47F7B8E9530D396E8ED50DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2CF9B1EBC15ECA1536AFA86FAF01899BBD02851C2FB632864165FCA4920 46548.pygtex [290]) (./_minted-Tutorial/F412BF266412BEC93BB127CA53AB4D0CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A73938953B2223965D08B528F27C56E8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE729029ED6ABA2E38F17FAA1C60732CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8BB12A44CF293B1BF656E236EFE0BE12BD02851C2FB632864165FCA4920 46548.pygtex [291]) (./_minted-Tutorial/F0EFB999D116D041397B95C62B2EED29BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FE5531F727D4D28736FC18DF8A430EBBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6E045C9432637E8C515E37CB4917FD57BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD9DB5C434FCB2537E43EF340112BD08BD02851C2FB632864165FCA4920 46548.pygtex [292]) (./_minted-Tutorial/C1D5880B46A9CAEDCEB7F545F21B98CBBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.2397pt too wide) in paragraph at lines 1070--1074 \OT1/cmr/m/n/10 Missing atoms and other is-sues can cause prob-lems when re-bui ld-ing a struc-ture. Use \OT1/cmtt/m/n/10 structure[]rebuild[]test$$ (./_minted-Tutorial/BD4323A41DFED2A7E4CD261AA65F95EDBD02851C2FB632864165FCA4920 46548.pygtex) [293] (./_minted-Tutorial/6395F38A139598C6CC297CDBA73A8A43BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D2C13C2AA9395E0B1E4F1DDC801798BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12E711A2CBFD0B046AA026208A117C1E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/813FE78A3F8D8E46F06FF71539F000E69543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/CD78F368EB103F71947A3184BB62B46F9543DFECA235A69AE23006BA05B 4EB70.pygtex [294]) (./_minted-Tutorial/8E34478E945971E05C77F0A0E8C1B9D89543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0D3FBB23D21A6A468370D56058193010BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BBA5405CCC4A3178ADA49DA358246C819543DFECA235A69AE23006BA05B 4EB70.pygtex [295]) (./_minted-Tutorial/DE601B1883F045FBEE1B28168CFF0CCABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AD606A07E346D24D5D31174E036406399543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/0ABBC5325B76EBCC5687BB33E7595F219543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [296 <./images/1a8o-ca-plot.png>] Overfull \hbox (15.27203pt too wide) in paragraph at lines 1293--1296 []\OT1/cmr/m/n/10 This work uses equa-tions de-vel-oped by Blue, the Hedronome- ter, dis-cussed in [][]$\OT1/cmtt/m/n/10 https : / / math . stackexchange . Overfull \hbox (116.15723pt too wide) in paragraph at lines 1293--1296 \OT1/cmtt/m/n/10 com / a / 49340 / 409$[][] \OT1/cmr/m/n/10 and fur-ther in [][ ]$\OT1/cmtt/m/n/10 http : / / daylateanddollarshort . com / mathdocs / Heron-[] like-[]Results-[]for-[]Tetrahedral-[]Volume . (./_minted-Tutorial/BACD9263B6DB9FE9B9C8FA59C017D190BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2AECB4AED1E5DFDC387B42EF509CC3F4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1D3E5D8C6C6880A4C1D7DC0DEE7DC0C7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/815743EBD76EB14B6A71E1A4AE6433A4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B285099D410967E19F3165C7B5395544BD02851C2FB632864165FCA4920 46548.pygtex [297]) Excluding 'htmlonly' comment. (./_minted-Tutorial/5DFAFA7DE84292336F50FFB5DD8AD22A9543DFECA235A69AE23006BA05B 4EB70.pygtex [298 <./images/phe-pairs-3pbl.png>]) (./_minted-Tutorial/ED5201F27B6F2CC7A881AC419DF87B5E9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (214.06847pt too wide) in paragraph at lines 1459--1475 [][] [299] (./_minted-Tutorial/10F60558792DABA08CE906FCD09A993CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/10BEDFA26FE20B8B11FC832131C1705EBD02851C2FB632864165FCA4920 46548.pygtex [300]) (./_minted-Tutorial/12DBC9D94FB0B4B78A481C6C111C6709BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/895E3343902EFB0E5475667B01C4B691BD02851C2FB632864165FCA4920 46548.pygtex [301]) [302] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A9BD02851C2FB632864165FCA4920 46548.pygtex [303]) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5DBD02851C2FB632864165FCA4920 46548.pygtex) [304]) [305] (./Tutorial/chapter_popgen.tex Chapter 15. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/331BEE386F268F55DE217F54E27EAB6B9543DFECA235A69AE23006BA05B 4EB70.pygtex) [306] (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [307] (./Tutorial/chapter_phylo.tex Chapter 16. (./_minted-Tutorial/8F8EFC1C83277AE6C5B5A259FAAC5671669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4914B4679D1C933D9AD76E95F18CE15844BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/3D758844BE2A5D4414B741470EDE8C24BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/719B0C758B666CDEEB2B250C2143A4ADBD02851C2FB632864165FCA4920 46548.pygtex [308]) (./_minted-Tutorial/8698B66B622D8A91E7706D889D5F35DDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6621A01BB423374C8FC608E267D0EA7DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [309] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 183--186 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [310 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/D713148814BA75DCDEB1C77B12674D9BBD02851C2FB632864165FCA4920 46548.pygtex [311 <./images/phylo-color-draw.png>]) (./_minted-Tutorial/69333D76AA5D97D8BF9E95DEECEEE2B1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/456F5679DCD4FF740E7A110889D86573BD02851C2FB632864165FCA4920 46548.pygtex [312]) (./_minted-Tutorial/2B3BFA62F3A778E4818959ED3E8AD3EEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/08F738B2988883F2B3BAD96FA439AD7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8C7F4AB58CCB44E2FF66E36A26E59F55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/00BD91C09868B2B26E32B5FB41A2583CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A1E441205EAE188E6F4319753E3982D3BD02851C2FB632864165FCA4920 46548.pygtex [313]) (./_minted-Tutorial/C3E382424C6F17EF8DB95D08D8AC9FEEBD02851C2FB632864165FCA4920 46548.pygtex) Excluding 'htmlonly' comment. [314 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 481--488 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [315] Overfull \hbox (13.48741pt too wide) in paragraph at lines 536--539 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [316] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [317] Overfull \hbox (15.04868pt too wide) in paragraph at lines 705--709 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . (./_minted-Tutorial/20AACD5E58630D4B64529F3A1ACD8119BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EB4CA3626331FD00CE50FECC3590095BBD02851C2FB632864165FCA4920 46548.pygtex) [318] (./_minted-Tutorial/0702C9875263768417DD3ED2EF78755EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C395044A3DB827E8D2E36BA5259475D2BD02851C2FB632864165FCA4920 46548.pygtex) [319]) [320] (./Tutorial/chapter_motifs.tex Chapter 17. (./_minted-Tutorial/9344D5588F066D22473BF4F77E39E1F3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AB934E1AD357BE20BA1F223A29AE486ABD02851C2FB632864165FCA4920 46548.pygtex [321]) (./_minted-Tutorial/A7AAAF382950D3CAD77D17E6B6489D03BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1FD74672EB5AFA6884F8D499FED8275BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5192D61C78C1A3C85C526E8A343B2D1ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9293BA115F68336B4D0213D24C96AE75BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BFC042DE8B1588B2D23A8510A608989CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/780058F0AF2BD1667406082AF62B622BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1AA6C485CC966DC35852E2E56CB690CFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/114CF431D502A1771C56B9B94DC877C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/24FEE45DD1241EADADB4B18D6AD262D2BD02851C2FB632864165FCA4920 46548.pygtex [322]) (./_minted-Tutorial/8572965E772BA3D97A5ACAB64A3CEA2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0CFCBF886B5144440F79F61243192022BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) [323] (./_minted-Tutorial/9E99895E29C3369AC7D546CE91F1E814BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/558D14A34910CE0F1CE14AC8AB8674D1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CADD201D618F08B90493FFBD7C160BD1BD02851C2FB632864165FCA4920 46548.pygtex) [324] (./_minted-Tutorial/09688621FC642BD071CE8B14DE593BDABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B6055E3EDC34B64895539DAABF61813BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EDCE72CAE83814FFFF4AE6A97CBB2476BD02851C2FB632864165FCA4920 46548.pygtex) [325] (./_minted-Tutorial/C6095CA0913B3D01D81200EBA18DE7FA669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2CAEA4D1EDEE84068D05546A212DB0C6BD02851C2FB632864165FCA4920 46548.pygtex [326]) (./_minted-Tutorial/15622530AF3C0273D3804ACCBDE86922BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/30EDED7029501226C973943BBA0D1ECDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5C8E141CD14F7220B986B96A3E564D14669566ECC2CFEDC7429F829576A D0DC6.pygtex [327]) (./_minted-Tutorial/95F985CC0D974FEE28E0B2667232BA3FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AA693ACE906F3FCF6D9B4DB2D841E650BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D11003572C5456D15CB1BF6CD74B860EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD308858A86E4C77FD58BD7CFCB2EF92669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/4910FFD3FDCDF743F7F37BE10B04F706BD02851C2FB632864165FCA4920 46548.pygtex [328]) (./_minted-Tutorial/AF4CF0FDC0B4EBF46401E9953A293EF5BD02851C2FB632864165FCA4920 46548.pygtex [329]) (./_minted-Tutorial/7D8B23E400A55050254232F7CA2CC9E1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0E771A916EB510C91DEEBFC8201442DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1C14559B3C7AC9C35B84F1518D8088FDBD02851C2FB632864165FCA4920 46548.pygtex [330]) (./_minted-Tutorial/46FF514D13E6C4030C26EC4EFF8CFAFDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8E9A5519710E4288CC6DA45EFD61B3AEBD02851C2FB632864165FCA4920 46548.pygtex) [331] (./_minted-Tutorial/47B231A79951117DFE8D7B369F5A0EDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CF5314A9EF9BBFFA32CFF87ADC53C378BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7EDF217AC860547FAAC456716F6D6BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7EC0366BAB057E95DD30855AF8AD06F8669566ECC2CFEDC7429F829576A D0DC6.pygtex [332]) (./_minted-Tutorial/805B769BEA8271618919879EBC73D6AB669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/AD271A766709EB68A386A406C3E3DCB0669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/3C12150A1943B695BB045865F0A87E44669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/95318595464A829C3F1A431E3C76909FBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (13.10551pt too wide) in paragraph at lines 692--695 \OT1/cmr/m/n/10 The [][]\OT1/cmtt/m/n/10 motifs.parse []\OT1/cmr/m/n/10 com-man d reads the com-plete file di-rectly, so you can close the file af-ter call-ing [][]\OT1/cmtt/m/n/10 motifs.parse[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/147DE2DA7F37C2A5A1C1344033AB8B84BD02851C2FB632864165FCA4920 46548.pygtex [333]) (./_minted-Tutorial/36E981BB5EF7EC3A1829EC830B0AF9C2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/22F78F0EFBBBF61FA3DB5795B5820CD7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F87F681AD46E2F9ABF3B87ADA8B1EFB6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37411E4F0C2364A16573A917D3E3918DBD02851C2FB632864165FCA4920 46548.pygtex [334]) (./_minted-Tutorial/64B1E8E30714DF156170A704E0AF9B9E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/744EE283B3B7A72BE718EF244D782CA7669566ECC2CFEDC7429F829576A D0DC6.pygtex [335]) (./_minted-Tutorial/BCCDFDD968CCC98039C6D6F4886917C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2F48F226FED2AEC7A54EAA6C769060B9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9D8413811B6BC75226431D501B682BD9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4293959D98D2DC2DC0CE6CA72DFD5D5CBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: `h' float specifier changed to `ht'. LaTeX Warning: `h' float specifier changed to `ht'. (./_minted-Tutorial/86BE687BF0F504548CFBA35246A755EFBD02851C2FB632864165FCA4920 46548.pygtex [336] [337]) (./_minted-Tutorial/21510EFF9B5DA96F8CCEE8DFB8F26406BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BD3FAF76582F3CDB784BAED2806A23BDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/841786D4B432970D606160D13E29453EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/57B039D0323A8CF9DC7A8F3DCA3CA782BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/46C8C36973CB3D67D276A48C8EA6FEE0BD02851C2FB632864165FCA4920 46548.pygtex [338]) (./_minted-Tutorial/99B6E6DD45FE4AED26044A4FD1A68C74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/001DF21D4EE824968A1A6CCAE41948EBBD02851C2FB632864165FCA4920 46548.pygtex [339]) (./_minted-Tutorial/5CBFAEFFA194A41048B5DAFCF4C98812BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E2EC88874CB26E442AD8A92E3073E225BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/176227E746894D602FF7231BCB8E5F21BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B9A36F2FAD2C11328984E7BBD1033E48BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F98B5F648636905472A89ADB4396EABD02851C2FB632864165FCA4920 46548.pygtex [340]) (./_minted-Tutorial/6E38B20582EF8FBF09C0864F13C6172DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D36079E59E9C6C6FCEFB62B1C38D03DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/949879BACF1AC9FDD5E01F1FDF5D0C7BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CEF4EF7AD2559AA1A840E9E5F4F1E33EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D1D6AE9E3598EC28091C3C92ADBF6891BD02851C2FB632864165FCA4920 46548.pygtex [341]) (./_minted-Tutorial/FAE6232F395C5C5C9B45609DB98ABE96BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CD7B5AA933F3E10D95D901D3BB5DA161BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/21D3336F2855CBE535339D390FE18E25BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/33B5E369AD9661A05C861A5AE12A5092BD02851C2FB632864165FCA4920 46548.pygtex [342]) (./_minted-Tutorial/A80C26CD370CE20C0095D5E8948B4CA2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/34B3515117C70C6DAC332384F14FD0D0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6EC91D6C707FE27D0D4D730403C86073BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B3D49921528F0B11F6E5813C6062BEC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3712C0CA690A1E7FF72D1693AABFE970BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4F50929124655BC08B3D6057B14984E5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA79BC51C090F498913A417759345DF4BD02851C2FB632864165FCA4920 46548.pygtex [343]) (./_minted-Tutorial/4B2423E325126B67BF464F894752E322BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/25136DD7F6E2BE72E81866FB3F2A41C9BD02851C2FB632864165FCA4920 46548.pygtex [344]) (./_minted-Tutorial/50111CA97C115B1826E19F91E69CE8BFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/9E8A7295F5BEF290E7F4283BD7261603BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5F089B3901176BD3F7658EA70DA2473BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/753220AB94A0DA3FD9F8379D30465A7ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/35B38D8BFFB75E06C84D419CF8CBB21BBD02851C2FB632864165FCA4920 46548.pygtex [345]) (./_minted-Tutorial/A6DBEC036FAC23CE4697722B836743C1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF57AC6C176D67E4A7B147371D11BA16BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B593C755A27EDDCAF56E94C0930898D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/53BF343E6B63B739979E29182E1485D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/868ABF9ABD2736A12F423306646D7706BD02851C2FB632864165FCA4920 46548.pygtex [346]) (./_minted-Tutorial/912C817861E626118AB2FA06F12910B6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/62D830B5536F542C80973708E7B78A26BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4A6B49E72A96FB6AC93E0E280B4F4472669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/F99AB908B88D7B819F597C02D259A52BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB4926B7151E97486270449C8F84AB41BD02851C2FB632864165FCA4920 46548.pygtex [347]) (./_minted-Tutorial/19ABF38625E3814B04BE6103C2AC4E6ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E422EFFCDD59E6EF6FB3B86E29D8F0B7BD02851C2FB632864165FCA4920 46548.pygtex)) [348] (./Tutorial/chapter_cluster.tex Chapter 18. [349] [350] [351] [352] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [353]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [354] [355] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [356] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [357] [358] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C239049267861739BD02851C2FB632864165FCA4920 46548.pygtex) [359] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE22BD02851C2FB632864165FCA4920 46548.pygtex) [360] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D41BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF8895055BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEBBD02851C2FB632864165FCA4920 46548.pygtex [361]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [362] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C175BD02851C2FB632864165FCA4920 46548.pygtex) [363] Overfull \hbox (106.77225pt too wide) in paragraph at lines 654--656 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEABD02851C2FB632864165FCA4920 46548.pygtex) [364] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8D3928D79091BFFA7AFB6D6F35A52C7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4D59CC328F454A26A4BE9F91740D961CBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.39864pt too wide) in paragraph at lines 739--750 [] [365] [366] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FCBD02851C2FB632864165FCA4920 46548.pygtex) [367] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E0BD02851C2FB632864165FCA4920 46548.pygtex [368]) (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA8504BD02851C2FB632864165FCA4920 46548.pygtex) [369] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [370]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--119 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [371] (./Tutorial/chapter_graphics.tex Chapter 19. [372] (./_minted-Tutorial/775A7C8BD2C1E8942CA7A717928F51A09543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/997BE59EDA00B2D427337713C8A7E3D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/684A3C9C1713469B78289C6B9952D8169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F1FF3DF6D6F3CDAA260F74B59EE3502F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/864F43F6883D29AB2276A3D7B4C4B0359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/F52EB727435E5F7D4D3C22DD13755CA79543DFECA235A69AE23006BA05B 4EB70.pygtex [373]) Excluding 'htmlonly' comment. (./_minted-Tutorial/68BE5A2D2503535D27E3B265B36AB36E9543DFECA235A69AE23006BA05B 4EB70.pygtex [374 <./images/plasmid_linear.png (PNG copy)>]) [375 <./images/pla smid_circular.png (PNG copy)>] (./_minted-Tutorial/ECF4549C3ED9BED5D89616D96689FF279543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F6FC21242AEF7E7CBB38249DA932A7359543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/E9061B00D3D1F94D19518B622458CA8B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/869D4007B198B35A03870134DB69E5F29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/83AFE18710C133D7AFEBCF65D9D3D8509543DFECA235A69AE23006BA05B 4EB70.pygtex [376]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7767B7CE8DD842D17DB77A8BF9691B949543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B7F9EB41E9BA682D9273C414D13CA80C9543DFECA235A69AE23006BA05B 4EB70.pygtex [377] [378 <./images/GD_sigil_labels.png (PNG copy)>]) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. (./_minted-Tutorial/6EE3865BBB66BBD15ABFD7BAE73F8FEB9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/74C150D1D11511477A4CD9DC0CD7863A9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/2216BF82E557F1E99146777612D2BA8F9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/67B3F646AA5F8690151428081229D39B9543DFECA235A69AE23006BA05B 4EB70.pygtex [379] [380 <./images/GD_sigils.png>] [381 <./images/GD_sigil_arrow _shafts.png>] [382 <./images/GD_sigil_arrow_heads.png>] [383]) Excluding 'htmlonly' comment. [384 <./images/plasmid_linear_nice.png (PNG copy) >] [385 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA899543DFECA235A69AE23006BA05B 4EB70.pygtex [386]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A9543DFECA235A69AE23006BA05B 4EB70.pygtex [387]) Excluding 'htmlonly' comment. [388 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex [389]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. [390] Excluding 'htmlonly' comment. [391 <./image s/three_track_cl.png>] [392 <./images/three_track_cl2a.png>] (./_minted-Tutorial/F9FFB9659EC22BC166AEB6F7284149779543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/A9695DE54C455E13B400269BF9F424FE9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F545B5C3D394029AA34E76D27DC2DBAF9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/3BACFFDF9009929D690C44BF09EFB67F9543DFECA235A69AE23006BA05B 4EB70.pygtex) [393] (./_minted-Tutorial/362E20D07B620886BB870C2BA76C6D809543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F5380F7F462C2A51219D9EF8994C192C9543DFECA235A69AE23006BA05B 4EB70.pygtex [394] [395 <./images/simple_chrom.pdf> <./images/tRNA_chrom.pdf>]) Excluding 'htmlonly' comment. (./_minted-Tutorial/7B75AD289117B9F25E36C48BBFCB0A759543DFECA235A69AE23006BA05B 4EB70.pygtex [396]) Excluding 'htmlonly' comment.) [397] (./Tutorial/chapter_kegg.tex Chapter 20. (./_minted-Tutorial/27731B46F813E809C1F5AB60C050CD4ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4FAF7CA55B5CBF29D4D0569020062C71BD02851C2FB632864165FCA4920 46548.pygtex) [398] (./_minted-Tutorial/39B217C0E81B95398ED4BBC9D1B0F5CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D9724C7E513E9BF6FDCCF6A64359AD4B9543DFECA235A69AE23006BA05B 4EB70.pygtex [399]) (./_minted-Tutorial/64868CEDE925B08BA4840E27792F9C95669566ECC2CFEDC7429F829576A D0DC6.pygtex)) [400] (./Tutorial/chapter_phenotype.tex Chapter 21. (./_minted-Tutorial/252224E77AA1520CEA1F05EB2C082F8DBD02851C2FB632864165FCA4920 46548.pygtex) [401] (./_minted-Tutorial/1742F69ECDDF3F5D15E6B5DBFEFA9721BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4835A2D15014EC539B36FCA111ABBB44BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD6100DF6B4884776EB70DBE176DB081BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/943877B8F1F5B9C773FB1AA7B24E159EBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BDF372B652AEF5EA570E28DA8244BF8BD02851C2FB632864165FCA4920 46548.pygtex [402]) (./_minted-Tutorial/BE8D8FA0E8D3D6C871BF41D7B5DEB51DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/290D0631491AEE7E10A3CE09C85D7206BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EA2967473FD2864501AEB5123E3D579DBD02851C2FB632864165FCA4920 46548.pygtex [403]) (./_minted-Tutorial/AEDB3BBBBA5C2503EDA86617E0872188BD02851C2FB632864165FCA4920 46548.pygtex [404]) (./_minted-Tutorial/43A346E75A27D33FDB3F346C240E06E6BD02851C2FB632864165FCA4920 46548.pygtex)) [405] (./Tutorial/chapter_cookbook.tex Chapter 22. (./_minted-Tutorial/D080533227BF139CB7F7C56D06E7D6EB9543DFECA235A69AE23006BA05B 4EB70.pygtex [406]) (./_minted-Tutorial/CA0835D76EF6887731674D8AB555091B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1F5CA35662EA2CAC7BDBA9D33CDB13A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A3BD1DBCF883DB2E1DD394B912E57164BD02851C2FB632864165FCA4920 46548.pygtex) [407] (./_minted-Tutorial/C6B2C783E94EA95E84DF3F108F727AD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EC0DF654B46A2F2CE5F2C795E0321ED29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/19A3D00CDA3CDDA100F55F41BCAAF54F9543DFECA235A69AE23006BA05B 4EB70.pygtex [408]) (./_minted-Tutorial/FF8E30AFA718C8DC6288D5C9AD354F649543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/019E169CFF67EC7D891D6A02396470619543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/9CFE18F499906D88CC2737F15500C03B9543DFECA235A69AE23006BA05B 4EB70.pygtex [409]) (./_minted-Tutorial/C2311B95BFB64D51B766D16ACEF028DD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D6A48411D1CBD21E55ABF85BFBC655419543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7448CA91BF0AA6E19C1517B6DE4087939543DFECA235A69AE23006BA05B 4EB70.pygtex) [410] (./_minted-Tutorial/C3FBD2FC664129F7A578076AD05E79D99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/38576C78990D3D95691E2AC6EB80ABA29543DFECA235A69AE23006BA05B 4EB70.pygtex) [411] (./_minted-Tutorial/D08928CA73DF435476A35E8ADF6418319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D51441AC892832CAA5031DFFA5F354509543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (5.83499pt too wide) in paragraph at lines 454--458 \OT1/cmr/m/n/10 mat (e.g. FASTA files). How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [412]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . (./_minted-Tutorial/6D336A88208F39729D1A90FF60CB5EBD9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2C62FFE33ECD45881AC7A8296BCCA5569543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7E077104A49653CA66AAC778C604E64A9543DFECA235A69AE23006BA05B 4EB70.pygtex [413]) (./_minted-Tutorial/ECD311074B098CDA38E7451A88AC0F9C9543DFECA235A69AE23006BA05B 4EB70.pygtex) [414] (./_minted-Tutorial/CC6E723850600015A2C6BAC6C88F89159543DFECA235A69AE23006BA05B 4EB70.pygtex) [415] (./_minted-Tutorial/1E88A30624397E1FA5202CD67F078C319543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/55F15E0B4613AC1B2AC177DC407373679543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C6B1FCFF3C4616196F6CE060D97D2587BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7B877C459BB3438E40CD76B614F605B69543DFECA235A69AE23006BA05B 4EB70.pygtex [416]) (./_minted-Tutorial/C47681A25A04F989A9657602F996D5B59543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/20E6EE0734FD2ED211933BE632478CAB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/BF6F632251CC051592D2BE57B36A38A09543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C8587EE0D03D0937B88179912FC3582EBD02851C2FB632864165FCA4920 46548.pygtex [417]) (./_minted-Tutorial/7F8C2BBB4F26A8E6A0FD7BCC41E2BB80BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FCE533CC3550AB6D1B3C6F6ED53E0CEBBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/37A86DCC1F181ADAA1855D9EBC303BAC44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/474B445E26A3CD55A1BA5820E4D03C7DBD02851C2FB632864165FCA4920 46548.pygtex [418]) (./_minted-Tutorial/DDBEEE137CB936CA422E560A63FB97B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B802763B27D7694A759DB2EBF16EF098BD02851C2FB632864165FCA4920 46548.pygtex) [419] (./_minted-Tutorial/EE9671DEE2B114F544A5881F074C33B29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/5A7FB5AC8923F9582CAE20A770A63052669566ECC2CFEDC7429F829576A D0DC6.pygtex [420]) (./_minted-Tutorial/8F229FE70B397EEE7D48ECD1D5BAD1CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/71434DB3B51372DFED40CEB6F06647B79543DFECA235A69AE23006BA05B 4EB70.pygtex [421]) Excluding 'htmlonly' comment. Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [422 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [423 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [424 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/90D5858002A1CEE4D697634EADDD2CA49543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/6655B5CD97C33186A22E6897501301FF9543DFECA235A69AE23006BA05B 4EB70.pygtex [425]) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [426 <./images/dot_plot_scatter.png >] (./_minted-Tutorial/601CCA4B782F1DA528DB81B0248031959543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment.) [427] [428 <./images/SRR001666.png >] (./Tutorial/chapter_testing.tex Chapter 23. (./_minted-Tutorial/867AD481B37AFD4F1A17FC0F2F42FCAE44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E8078015A2C53794A733DDC875BD062144BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/754EBE4BCCE307413E74F18728530D0444BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/E40D6903CCE8EA230C75C80B7C2D907344BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/BC243371043473AEE20C23FF0FABFF0D44BBF456F55B5DC060035246D76 9EADB.pygtex) Overfull \hbox (39.35472pt too wide) in paragraph at lines 73--77 []\OT1/cmr/m/n/10 Tests based on Python's stan-dard [][]\OT1/cmtt/m/n/10 unitte st []\OT1/cmr/m/n/10 frame-work will [][]\OT1/cmtt/m/n/10 import unittest []\OT 1/cmr/m/n/10 and then de-fine [][]\OT1/cmtt/m/n/10 unittest.TestCase [429] (./_minted-Tutorial/3FB66F60C11B0B8CE53B4D1228F39850669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/2A1F0B8D037B993D748BF652420448ED44BBF456F55B5DC060035246D76 9EADB.pygtex [430]) (./_minted-Tutorial/61465735FDB5BC7ADF12D7A4628FC9A79543DFECA235A69AE23006BA05B 4EB70.pygtex) [431] (./_minted-Tutorial/826F7B9143F73D7CFCAB00906377DAB99543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/B1E279D3993E4775FBE4555B6DD342AD44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/313C740A73E814DA220EB71149FE706E9543DFECA235A69AE23006BA05B 4EB70.pygtex [432]) (./_minted-Tutorial/99DA0A53F2BD41D9D1BCE2B0332444F444BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/4916E014295B56C6CDDB3C287542DA299543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/1B0AB11BDA71CF4763A5A4A8B82977119543DFECA235A69AE23006BA05B 4EB70.pygtex [433]) (./_minted-Tutorial/7A0DBB9735CDAA1699A6FA164701062F44BBF456F55B5DC060035246D76 9EADB.pygtex) [434] (./_minted-Tutorial/3E57444149EF1ACC12DA2995F5B0345644BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/DD3A1A642CB850F292FC934F9336EC4344BBF456F55B5DC060035246D76 9EADB.pygtex)) [435] (./Tutorial/chapter_contributing.tex Chapter 24. [436] (./_minted-Tutorial/61D19A91BF1A1F95030292E40EF87A3644BBF456F55B5DC060035246D76 9EADB.pygtex) [437]) [438] (./Tutorial/chapter_appendix.tex Chapter 25. (./_minted-Tutorial/109DA6882E9B770A79B0E47E5D014D32BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8DF7F2BE4A1010E81F7C5AD3A4628599543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/268983882DD871BC94F164D025D08B429543DFECA235A69AE23006BA05B 4EB70.pygtex [439]) (./_minted-Tutorial/940D9D0165FD2273E52C2D203CE26C429543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/4B521F4803AD1FD3B86D09A2ECD5A203BD02851C2FB632864165FCA4920 46548.pygtex)) [440] [441] [442] [443] [444] (./Tutorial.aux (./Tutorial/chapter_introduction.aux) (./Tutorial/chapter_quick_start.aux) (./Tutorial/chapter_seq_objects.aux) (./Tutorial/chapter_seq_annot.aux) (./Tutorial/chapter_seqio.aux) (./Tutorial/chapter_align.aux) (./Tutorial/chapter_pairwise.aux) (./Tutorial/chapter_msa.aux) (./Tutorial/chapter_pairwise2.aux) (./Tutorial/chapter_blast.aux) (./Tutorial/chapter_searchio.aux) (./Tutorial/chapter_entrez.aux) (./Tutorial/chapter_uniprot.aux) (./Tutorial/chapter_pdb.aux) (./Tutorial/chapter_popgen.aux) (./Tutorial/chapter_phylo.aux) (./Tutorial/chapter_motifs.aux) (./Tutorial/chapter_cluster.aux) (./Tutorial/chapter_graphics.aux) (./Tutorial/chapter_kegg.aux) (./Tutorial/chapter_phenotype.aux) (./Tutorial/chapter_cookbook.aux) (./Tutorial/chapter_testing.aux) (./Tutorial/chapter_contributing.aux) (./Tutorial/chapter_appendix.aux)) ) (see the transcript file for additional information) < /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmmi10.pfb> Output written on Tutorial.pdf (445 pages, 3170888 bytes). Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file biopdb_faq.aux. *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- LaTeX Warning: Reference `sub:The-Structure-object' on page 4 undefined on inpu t line 335. [4] [5] LaTeX Warning: Reference `cap:SMCRA' on page 6 undefined on input line 548. [6] [7 <./images/smcra.png (PNG copy)>] [8] LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 750. LaTeX Warning: Reference `cap:SMCRA' on page 9 undefined on input line 779. LaTeX Warning: Reference `sub:Analysis' on page 9 undefined on input line 821. [9] LaTeX Warning: Reference `sub:Analysis' on page 10 undefined on input line 826. [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] LaTeX Warning: Reference `cap:DSSP-codes' on page 12 undefined on input line 10 41. [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `biopdb_faq.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on biopdb_faq.pdf (15 pages, 163591 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information) Output written on biopdb_faq.pdf (15 pages, 165504 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.25 (TeX Live 2023/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-01-22> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information) Output written on biopdb_faq.pdf (15 pages, 165504 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1/Doc' make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online GraphicsBitmaps raxml_tool Tutorial BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p "3.12 3.11" --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:311: set -e; \ mkdir -p /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/home; \ mkdir -p /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc; \ cp -a Doc/Tutorial /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc; \ cp -a Doc/examples /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc; \ cp -a Tests /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build; \ cd /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/home python3.12 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Align_Alignment ... ok test_Align_a2m ... ok test_Align_bed ... ok test_Align_bigbed ... ok test_Align_bigmaf ... ok test_Align_bigpsl ... ok test_Align_chain ... ok test_Align_clustal ... ok test_Align_codonalign ... ok test_Align_emboss ... ok test_Align_exonerate ... ok test_Align_fasta ... ok test_Align_hhr ... ok test_Align_maf ... ok test_Align_mauve ... ok test_Align_msf ... ok test_Align_nexus ... ok test_Align_phylip ... ok test_Align_psl ... ok test_Align_sam ... ok test_Align_stockholm ... ok test_Align_tabular ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_CEAligner ... ok test_PDB_DSSP ... ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path test_PDB_Polypeptide ... ok test_PDB_QCPSuperimposer ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_Selection ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqFeature.py:1040: BiopythonParserWarning: Attempting to fix invalid location '3..2' as it looks like incorrect origin wrapping. Please fix input file, this could have unintended behavior. warnings.warn( ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py:549: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._codonaligner docstring test ... ok Bio.Align._pairwisealigner docstring test ... ok Bio.Align.a2m docstring test ... ok Bio.Align.analysis docstring test ... ok Bio.Align.bed docstring test ... ok Bio.Align.bigbed docstring test ... ok Bio.Align.bigmaf docstring test ... ok Bio.Align.bigpsl docstring test ... ok Bio.Align.chain docstring test ... ok Bio.Align.clustal docstring test ... ok Bio.Align.emboss docstring test ... ok Bio.Align.exonerate docstring test ... ok Bio.Align.fasta docstring test ... ok Bio.Align.hhr docstring test ... ok Bio.Align.interfaces docstring test ... ok Bio.Align.maf docstring test ... ok Bio.Align.mauve docstring test ... ok Bio.Align.msf docstring test ... ok Bio.Align.nexus docstring test ... ok Bio.Align.phylip docstring test ... ok Bio.Align.psl docstring test ... ok Bio.Align.sam docstring test ... ok Bio.Align.stockholm docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.Align.tabular docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.PDBData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ccealign docstring test ... ok Bio.PDB.cealign docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.qcprot docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 538 tests in 1622.464 seconds Skipping any tests requiring internet access Python version: 3.12.3 (main, Apr 10 2024, 05:33:47) [GCC 13.2.0] Operating system: posix linux I: pybuild base:311: set -e; \ mkdir -p /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/home; \ mkdir -p /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/Tutorial /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/examples /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc; \ cp -a Tests /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build; \ cd /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/home python3.11 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Align_Alignment ... ok test_Align_a2m ... ok test_Align_bed ... ok test_Align_bigbed ... ok test_Align_bigmaf ... ok test_Align_bigpsl ... ok test_Align_chain ... ok test_Align_clustal ... ok test_Align_codonalign ... ok test_Align_emboss ... ok test_Align_exonerate ... ok test_Align_fasta ... ok test_Align_hhr ... ok test_Align_maf ... ok test_Align_mauve ... ok test_Align_msf ... ok test_Align_nexus ... ok test_Align_phylip ... ok test_Align_psl ... ok test_Align_sam ... ok test_Align_stockholm ... ok test_Align_tabular ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... skipping. Install clustalw or clustalw2 if you want to use it from Biopython. test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... ok test_EmbossPrimer ... ok test_Entrez ... ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Helvetica' ok test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_CEAligner ... ok test_PDB_DSSP ... ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path test_PDB_Polypeptide ... ok test_PDB_QCPSuperimposer ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_Selection ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqFeature.py:1040: BiopythonParserWarning: Attempting to fix invalid location '3..2' as it looks like incorrect origin wrapping. Please fix input file, this could have unintended behavior. warnings.warn( ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:549: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_samtools_tool ... skipping. Install samtools and correctly set the file path to the program if you want to use it from Biopython test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._codonaligner docstring test ... ok Bio.Align._pairwisealigner docstring test ... ok Bio.Align.a2m docstring test ... ok Bio.Align.analysis docstring test ... ok Bio.Align.bed docstring test ... ok Bio.Align.bigbed docstring test ... ok Bio.Align.bigmaf docstring test ... ok Bio.Align.bigpsl docstring test ... ok Bio.Align.chain docstring test ... ok Bio.Align.clustal docstring test ... ok Bio.Align.emboss docstring test ... ok Bio.Align.exonerate docstring test ... ok Bio.Align.fasta docstring test ... ok Bio.Align.hhr docstring test ... ok Bio.Align.interfaces docstring test ... ok Bio.Align.maf docstring test ... ok Bio.Align.mauve docstring test ... ok Bio.Align.msf docstring test ... ok Bio.Align.nexus docstring test ... ok Bio.Align.phylip docstring test ... ok Bio.Align.psl docstring test ... ok Bio.Align.sam docstring test ... ok Bio.Align.stockholm docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.Align.tabular docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.PDBData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ccealign docstring test ... ok Bio.PDB.cealign docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.qcprot docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 538 tests in 1555.772 seconds Skipping any tests requiring internet access Python version: 3.11.9 (main, Apr 10 2024, 13:16:36) [GCC 13.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-KZ_QA6n6 mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_auto_install install -m0755 -d /build/reproducible-path/python-biopython-1.83\+dfsg1/debian/tmp pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/python-biopython-1.83\+dfsg1/debian/tmp I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsaFp2x8a creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/tmpdirprankmsajhF5mh copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/output.best.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/output.best.fas -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_translate.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_seq.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_samtools_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_prosite.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_prodoc.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phyml_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phenotype_fit.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_phenotype.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise_aligner.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise2_no_C.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/pairwise2_testCases.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_pairwise2.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_motifs_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_motifs.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_kNN.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_geo.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_codonalign.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_cellosaurus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_bgzf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_align_substitution_matrices.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_align.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Uniprot.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_UniProt_GOA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_UniGene.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TreeConstruction.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TogoWS.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_TCoffee_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SwissProt.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SffIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Seq_objs.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqUtils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqRecord.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_write.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_features.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_Gck.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqFeature.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_write.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_model.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/search_tests_common.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SVDSuperimposer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Scop.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Residues.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Raf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Hie.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Dom.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Des.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Cla.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SCOP_Astral.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Restriction.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_RCSBFormats.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ProtParam.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Probcons_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Prank_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_networkx.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_NeXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo_CDAO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PhyloXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phylo.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Phd.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Pathway.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PQR.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_vectors.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_internal_coords.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Superimposer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Selection.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_SMCRA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_SASA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_QCPSuperimposer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PSEA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PDBParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_PDBIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_NACCESS.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_KDTree.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Exposure.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Disordered.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_Dice.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_DSSP.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDB_CEAligner.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PDBList.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_yn00.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_codeml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_PAML_baseml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Nexus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NaiveBayes.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NMR.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBI_qblast.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_NCBIXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Muscle_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Medline.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_MarkovModel.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Mafft_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_MafIO_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_LogisticRegression.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KeyWList.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_nographics.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_graphics_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KGML_graphics.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KEGG_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_KEGG.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_HMMGeneral.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_HMMCasino.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsGeneral.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsDistribution.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GraphicsChromosome.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GenomeDiagram.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_GenBank.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_File.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Fasttree_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ExPASy.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Enzyme.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez_parser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Entrez.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_EmbossPrimer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Emboss.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_EMBL_unittest.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Dialign_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Consensus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Compass.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ColorSpiral.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_CodonTable.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Cluster.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Clustalw_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Chi2.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_CAPS.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Blast_Record.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/common_BioSQL_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_SeqIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/seq_tests_common.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/common_BioSQL.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_BWA_tool.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Application.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_tabular.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_stockholm.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_sam.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_psl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_phylip.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_nexus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_msf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_mauve.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_maf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_hhr.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_fasta.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_exonerate.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_emboss.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_codonalign.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_clustal.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_chain.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigpsl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigmaf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bigbed.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_bed.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_a2m.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Align_Alignment.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignInfo.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_convert.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_AlignIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Affy.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/test_Ace.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/__pycache__/requires_internet.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Muscle_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_translate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_samtools_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_phyml_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_phenotype_fit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_phenotype.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_pairwise_alignment_map.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_pairwise_aligner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_pairwise2_no_C.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_motifs_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_motifs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_geo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_codonalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_align_substitution_matrices.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_align.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Uniprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_UniProt_GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_UniGene.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_TogoWS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_TCoffee_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SwissProt.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Seq_objs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_write.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_features.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Xdna.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_SnapGene.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_SeqXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Insdc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_Gck.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqIO_AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_write.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_fasta_m10.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blat_psl_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blat_psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_xml_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_tab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SearchIO_blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SVDSuperimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Scop.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_SCOP_Astral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_RCSBFormats.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Probcons_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Prank_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phylo_networkx.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phylo_matplotlib.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phylo_NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phylo_CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phylo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PQR.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_SMCRA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_QCPSuperimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIFIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_KDTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Exposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Disordered.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDB_CEAligner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PAML_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PAML_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_PAML_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_NMR.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_NCBI_qblast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_NCBI_BLAST_tools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Medline.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Mafft_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_MafIO_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KGML_nographics.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KGML_graphics_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KGML_graphics.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KEGG_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_KEGG.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_HMMGeneral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_HMMCasino.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_GraphicsGeneral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_GraphicsDistribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_GraphicsChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_GenomeDiagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_GenBank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Fasttree_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_ExPASy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Entrez_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Entrez_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Entrez.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_EmbossPrimer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_EMBL_unittest.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Dialign_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Compass.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Cluster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Clustalw_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_ClustalOmega_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_CAPS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Blast_Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_sqlite3_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_sqlite3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_psycopg2_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_mysql_connector.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_BWA_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Application.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_codonalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Align_Alignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_convert.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO_ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_AlignIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Affy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/test_Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/seq_tests_common.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/search_tests_common.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/run_tests.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/requires_internet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlate_2.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/SmallPlate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/Plates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/Plate_2.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/Plate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/phenotype/BadPlate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/pairwise2_testCases.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/msf/W_prot.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/msf/DOA_prot.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/msf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/transfac.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/minimal_test.meme -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/meme.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/meme.adh.classic.oops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.adh.de.oops.html.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.adh.de.oops.html.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/fourrows.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/fourcolumns.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/clusterbuster.pfm.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/clusterbuster.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/alignace.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/abdb.xms -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/SRF.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/REB1.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/MA0056.1.transfac -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/motifs/Arnt.sites -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/common_BioSQL_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/common_BioSQL.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/pro5.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/pro4.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/pro3.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/pro2.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/pro1.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl5.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl4.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl3.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl2.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/nucl1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_pro.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_nucl.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/egfr_id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/drosophila.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/codonalign/adh.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/biosql.ini.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/biosql.ini.appveyor -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-c.xprt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-b.xdna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Xdna/sample-a.xdna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Xdna creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_yeast.gaf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniProt/goa_human_sample.gpi -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniGene/Mdm_partial.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniGene/Hs.2.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/UniGene/Eca.1.2425.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.long.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.littleendian.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TwoBit/sequence.bigendian.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TwoBit creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/upgma.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/trees.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/test.log -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/strict_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/pars3.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/nj_min.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/nj.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/msa.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/majority_ref.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/consensus_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/TreeConstruction/adam_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/TreeConstruction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni003 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni002 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/uni001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp016 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp015 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp013 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/sp012 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.rdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.list -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.gff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/multi_ex.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/keywlist2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/keywlist.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/UniRef90_P99999.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/R5HY77.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q7Z739.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13639.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13639.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/Q13454.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P97881.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P84001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P68308.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P62258.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P60904.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P60137.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P39896.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P16235.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P0CK95.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P0A186.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/P04439.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/O95832.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/O23729.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/H2CNN8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/H2CNN8.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/F2CXE6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SwissProt/F2CXE6.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/redAltAADistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/redAADistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/protein_freq.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/protein_count.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/acc_rep_mat.pik -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SubsMat/aaDistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SubsMat creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/simple.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam5.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam4.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam3.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam2.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/rfam1.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam9.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam8.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam7.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam6.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam5.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam4.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam3.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam2.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/pfam1.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/globins45.ali -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/funny.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/example_nonstandardannotations.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/example.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath3.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath2.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Stockholm/cath1.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Stockholm creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-f.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-e.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SnapGene/sample-d.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SnapGene/pFA-KanMX4.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SnapGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/rna_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/protein_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/global_species_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/dna_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/corrupt_example2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SeqXML/corrupt_example1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SeqXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/sam2.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/sam1.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/readme.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_refresh.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_header.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1_header.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/ex1.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/bam2_sorted.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/bam2.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/bam1_sorted.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SamBam/bam1.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SamBam creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Saf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Saf/saf1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Saf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/testDom.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/raftest.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.des.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/triple_sff.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/paired.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/greek.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Roche creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Registry/seqs.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Registry/bt001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Registry/EDD_RAT.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Registry creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/taqi.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/taqi.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/pvuii.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/pvuii.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/foki.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/foki.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/crei.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/crei.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/cac81.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/cac81.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/bamii.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Rebase/bamii.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Rebase creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/zero_length.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/tricky.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/solexa_example.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/sanger_93.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/longreads_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/illumina_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example_dos.fastq.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example_dos.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/example.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_title.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_tabs.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_spaces.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_short_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_vtab.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_tab.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_space.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_null.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_escape.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_qual_del.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_no_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_long_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_double_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_double_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Quality/error_diff_ids.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00546.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00488.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00432.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00165.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00159.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/ps00107.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Prosite/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo3.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo2.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/haplo.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/c3space.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/c3line.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/c2space.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/c2line.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/big.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PopGen/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/made_up.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/distribution.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/bcl_2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PhyloXML/apaf.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PhyloXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/two.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/three.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/six.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/sequential2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/sequential.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/reference_dna2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/reference_dna.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/random.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/one.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/interlaced2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/interlaced.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/horses.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/horses.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/hennigian.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/four.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phylip/five.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phylip creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phd/phd_solexa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phd/phd_454 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phd/phd2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Phd/phd1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Phd creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PQR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PQR/1A80.pqr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PQR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/occupancy.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/lib_10_z_5.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/ions.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/header.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/disordered.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/d256ba_.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/alignment_file.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/a_structure.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/a_structure.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/Wilke_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/Sander_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/Miller_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/Ahmad_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/7DDO.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/7CFN_aligned.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/7CFN.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/6WQA.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/4ZHL.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/4ZHL.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/4Q9R_min.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/4CUP.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/4CUP.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/3JQH.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2n0n_M1.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2XHE.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2XHE.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2OFG.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG_noheader.dssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.dssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/2BEG.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1SSU_mod.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1SSU_mod.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1MOM_min.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1LCD.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1LCD.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1AS5.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.xyzr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.rsa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A8O.asa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PDB/1A7G.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/gen_results.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/species.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/lysin.trees -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Trees/bad.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Trees creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/yn00 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/SE creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/versions creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Results/bad_results.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Results creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/yn00.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/species.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/codeml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/baseml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/bad1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Control_files/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/longnames.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/dottednum.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/dottednames.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/alignment.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/Alignments creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd_littleendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd_bigendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_odd.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_even_littleendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_even_bigendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nib/test_even.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/test_Nexus_input.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/test.new -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/int_node_labels.nwk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/codonposset.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/bats.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeuralNetwork/repeat.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeuralNetwork/enolase.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeuralNetwork creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/trees.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/trees-uris.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/treebase-record.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/tolweb.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/timetree.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/taxa.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/sets.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/phenoscape.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/nexml.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/meta_types.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/meta_taxa.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/edgelabels.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NeXML/characters.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NeXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NMR/out_example.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NMR/noed.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NBRF/clustalw.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NBRF/DMB_prot.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NBRF/DMA_nuc.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NBRF/Cw_prot.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/NBRF/B_nuc.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/NBRF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta9.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta2.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/meta.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MetaTool/Meta3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MetaTool creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Medline/pubmed_result1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/simple_short.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/simple.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/separate.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/mm9.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/equCab1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/combined.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Mauve/canFam2.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Mauve creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/wrong_version.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/unfinished.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_test.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_test.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/ucsc_mm9_chr10.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/length_coords_mismatch.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/invalid.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/humor.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/corrupt.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/cnksr3.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/bundle_without_target.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/bundle_without_target.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/bug2453.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/MAF/bigMaf.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/MAF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/map03070.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/map01100.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/map00950.rea -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/ko03070.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/ko01100.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/ko00253.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/ko00010.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/gene.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.new -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.irregular -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/enzyme.4letter -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/compound.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/KEGG/compound.irregular -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/InterProScan copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/InterProScan/test_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/InterProScan creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/IntelliGenetics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_011.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Hmmer/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Hmmer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/hhpred_9590198.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/allx.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/7rbx_A_hhsearch_trunc.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/HHsuite/2uvo_hhblits.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/HHsuite creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_transparency.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_transparency.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_colors.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_widths.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map03070_original.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/map01100_original.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/scatter_test_7.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/scatter_test_1.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/simple_bar.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/multi_bar.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/tRNA_chrom.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.eps -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/organism.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/random_organism.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_labels.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrows.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigils_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigils.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_sigils.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/labels_default_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/labels_default.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/labels_default.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/line_graph_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/line_graph.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_circular.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_linear.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_region_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/square_test.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/spiral_test.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Graphics/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_series.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_platform.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_family.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_dual.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/soft_ex_affy.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/GSM804.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/GSM700.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/GSM691.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/GSM645.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Geo/GSE16.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/tsa_acropora.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/tls_KDHP01000000.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/protein_refseq2.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/protein_refseq.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/pri1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/pBAD30.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/origin_line.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/one_of.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/noref.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/no_origin_no_end.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/no_end_marker.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/negative_location.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/iro.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_structured_comment.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_product.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_misc_feature.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/gbvrl1_start.seq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/extra_keywords.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_version.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/empty_accession.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/dbsource_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/cor6_6.gb.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/cor6_6.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/blank_seq.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_origin_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/bad_loc_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/arab1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NT_019265.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NP_416719.gbwithparts -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.tsv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.ffn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_005816.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.gb.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/NC_000932.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/KF527485_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/KF527485.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/HM138502_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/HM138502.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/GU949562.1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/EU851978_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/EU851978.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/DS830848.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GenBank/1MRR_A.gp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Gck copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Gck/artificial.gck -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Gck creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GFF/multi.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802x.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802lc.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001802.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/GFF/NC_001422.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/GFF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/tc_out.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/wisteria.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/sweetpea.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/rosemary.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/rose.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_m8CC.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_m8CB.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/protein_lib.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/phlox.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output016.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output015.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output014.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output013.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output012.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output011.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output010.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output009.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output008.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output007.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output006.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output005.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output004.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output003.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output002.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/output001.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_m8CC.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_m8CB.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/nucleotide_lib.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/lupine.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/loveliesbleeding.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/lavender.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/flowers.pro.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/fa01 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/f003 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/f002 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/f001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/elderberry.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/dups.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/centaurea.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/aster_no_wrap.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/aster.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Fasta/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Fasta creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/FSSP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/FSSP/1cnv.fssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/FSSP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/ExtendedPhylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/ExtendedPhylip/primates.phyx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/ExtendedPhylip creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_none.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_o_cigar_fshifts2.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cigar_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Exonerate/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Exonerate creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Enzymes/valine.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Enzymes/proline.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Enzymes/lipoprotein.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Enzymes/lactate.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Enzymes creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/taxonomy.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed3.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/pubmed1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/protein.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/nucleotide2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/nucleotide1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/ncbi_mim.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/journals.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary9.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esummary1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/espell.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/esearch1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/epost3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/epost2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/epost1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/elink1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/einfo1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/egquery2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/egquery1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/efetch_schemas.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/efetch_pmc.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Entrez/biosample.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse4.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water_reverse1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/water.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/short.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/no_oligo.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_overhang.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_nobrief_multiple.pair -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/needle_asis.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/needle.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/matcher_simple.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/matcher_pair.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/internal_oligo.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/cds_reverse.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/cds_forward.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/bac_find.psearch -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/bac_find.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/alignret.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/NirK_full.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Emboss/NirK.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/xx_after_co.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/patents.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/location_wrap.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/kipo_prt_sample.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/hla_3260_sample.imgt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/epo_prt_selection.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/embl_with_0_line.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/U87107.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/TRBG361.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/SC10H5.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/RepBase23.02.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/Human_contigs.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/DS830848.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/DD231055_edited2.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/DD231055_edited.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/AE017046.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/AAA03323.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/A04195.imgt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/EMBL/101ma_no_coords.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/EMBL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Compass/comtest2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Compass/comtest1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CodonUsage copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CodonUsage creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Cluster/cyano.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Cluster/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/temp horses.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/protein.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/promals3d.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/probcons.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/opuntia.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/odd_consensus.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/muscle.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/msaprobs.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/kalign.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/hedgehog.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Clustalw/clustalw.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Clustalw creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Cellosaurus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CDAO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/CDAO/test.cdao -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/CDAO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/rna.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/rn6ToRn7.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/rheMac8ToRheMac10.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_35_002.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_35_001.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_005.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_004.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_003.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_002.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/pslx_34_001.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_002.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_35_001.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_005.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_004.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_003.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_002.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_002.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/psl_34_001.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/panTro6.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/panTro5ToPanTro6.over.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/panTro5ToPanTro6.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/panTro5.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/panTro5.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/mm10ToMm39.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/mirna.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/hg38.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/hg19ToHg38.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/fasta_34.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/est.panTro5.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/est.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna_rna.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/dna.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/calJac3ToCalJac4.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigbedtest.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigbedtest.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigbedtest.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigbed_extended.littleendian.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigbed_extended.bigendian.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigPsl.cds -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigPsl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bigPsl.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bedExample2.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed9.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed9.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed9.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed8.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed8.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed8.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed7.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed7.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed7.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed6.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed6.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed6.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed5.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed5.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed5.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed4.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed4.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed4.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed3.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed3.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed3.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed12.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed12.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/bed12.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/balAcu1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blat/CAG33136.1.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blat creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2900_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/wnts.xml.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/wnts.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_wait.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_short_result.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_short_empty.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_pcr.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_orchid.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_disco.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mock_actin.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mirna.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/mirna.tab -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Blast/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BioSQL/cor6_6.db -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-pg.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/BWA creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/rn7.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/rheMac10.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/pig.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/pig.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/panTro6.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/mm39.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/hg38.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/hg38.chrom.sizes -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/ecoli.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/ecoli.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/cow.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/cow.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/calJac4.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/bsubtilis.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Align/bsubtilis.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Affy/affy_v4_example.CEL -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Affy/affy_v3_example.CEL -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Ace/seq.cap.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Ace/contig1.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Ace/consed_sample.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Ace creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/test_data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/test.fsa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/nonascii_encoding.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/no_smpl1.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/fake.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/empty.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/A6_1-DB3.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/3730.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/3100.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/Abi/310.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Tests/.coveragerc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_appendix.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_contributing.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_testing.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cookbook.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phenotype.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_kegg.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_graphics.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cluster.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_motifs.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phylo.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_popgen.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pdb.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_uniprot.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_entrez.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_searchio.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_blast.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pairwise2.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_msa.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pairwise.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_align.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seqio.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_quick_start.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_introduction.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_uniprot.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_testing.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seqio.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_searchio.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_quick_start.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_popgen.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phylo.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_phenotype.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pdb.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pairwise2.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_pairwise.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_msa.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_motifs.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_kegg.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_introduction.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_graphics.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_entrez.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cookbook.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_contributing.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_cluster.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_blast.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_appendix.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial/chapter_align.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/Tutorial.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/www_blast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/swissprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/simple.dnd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.dnd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/opuntia.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/nmr/simplepredict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/nmr/noed.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/my_blat.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/my_blast.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/m_cold.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ls_orchid.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/fasta_iterator.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/fasta_dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ec_5.4.2.2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/clustal_run.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/beta.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/alpha.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/Plates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/PF05371_seed.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Doc/examples/ACT_example.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/plugins creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/plugins/linux creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/methods creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/mcoffee creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.t_coffee/cache creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache/matplotlib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/home/.cache/matplotlib/fontlist-v330.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.cache/matplotlib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/matplotlib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/DBUtils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/Loader.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/BioSeqDatabase.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/BioSeq.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/BioSeq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/BioSeqDatabase.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/DBUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/Loader.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/BioSQL/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/MaxEntropy.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/pairwise2.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/kNN.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/NaiveBayes.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/MarkovModel.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/LogisticRegression.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/bgzf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/SeqFeature.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/SeqRecord.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/Seq.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/File.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/cpairwise2module.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt/__pycache__/GOA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt/GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniGene/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/UniGene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/Consensus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/CDAO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/CDAOIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NeXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/PhyloXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NexusIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/Newick.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/NewickIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/BaseTree.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/_io.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_paml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PAML/yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Fasttree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Phyml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/_Raxml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/BaseTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/CDAOIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/NeXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/Newick.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/NewickIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/PhyloXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/_cdao_owl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/_io.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Phylo/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/TogoWS/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/TogoWS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt/__pycache__/KeyWList.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt/KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SwissProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SVDSuperimposer/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/Phd.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/Ace.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_bwa.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Applications/_samtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Sequencing/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/lcc.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/CheckSum.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/MeltingTemp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/ProtParamData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqUtils/lcc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/TabIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SwissIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SffIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PirIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/QualityIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PhdIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/PdbIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/NibIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/IgIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/GckIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/AceIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/Interfaces.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/AbiIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/_twoBitIO.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/AceIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/GckIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/IgIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/InsdcIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/PhdIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/PirIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/SeqXmlIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/SnapGeneIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/SwissIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/TabIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/UniprotIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/XdnaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/BlatIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/_index.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/_utils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/hit.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/_base.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/query.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/hit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/hsp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_model/query.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/BlatIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SearchIO/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Raf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Dom.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Hie.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Residues.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Cla.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/Des.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SCOP/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/PrintFormat.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/Restriction.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/PrintFormat.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/Restriction_Dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Restriction/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/Controller.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/EasyController.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/FileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/GenePop/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PopGen/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/pm_fitting.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/phen_micro.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/phen_micro.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/phenotype/pm_fitting.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/MultiGraph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/Rep/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Pathway/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/NOEtools.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/xpktools.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/NOEtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NMR/xpktools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Nodes.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Trees.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/StandardData.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/Nexus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/cnexus.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/Nodes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/StandardData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/Trees.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Nexus/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/thresholds.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/xms.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/minimal.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/meme.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/mast.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/pfm.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/clusterbuster.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/alignace.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/transfac.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/matrix.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/_pwm.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__pycache__/db.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/jaspar/db.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/applications/_xxmotif.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/alignace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/clusterbuster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/mast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/matrix.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/meme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/minimal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/pfm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/thresholds.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/transfac.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/motifs/xms.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Medline/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Medline/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/SCADIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PICIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ic_rebuild.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PSEA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/NACCESS.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/SASA.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/NeighborSearch.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Dice.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/FragmentMapper.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/HSExposure.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ResidueDepth.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/DSSP.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/StructureAlignment.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/qcprot.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/cealign.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Superimposer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Selection.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/mmcifio.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Polypeptide.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBList.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/MMCIFParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Residue.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Chain.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/ic_data.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/vectors.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Atom.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/internal_coords.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Model.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Entity.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/Structure.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/StructureBuilder.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBExceptions.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/PDBParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/kdtrees.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ccealignmodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/AbstractPropertyMap.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Atom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Entity.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/HSExposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/NeighborSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PDBExceptions.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PICIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Residue.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ResidueDepth.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/SCADIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Structure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/StructureBuilder.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/cealign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ic_data.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/ic_rebuild.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmcifio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/qcprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/DefaultParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/PDB/mmtf/mmtfio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/__pycache__/REST.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/KGML_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/KGML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Map/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Map/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Gene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Enzyme/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/Compound/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/REST.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/KEGG/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/Utilities.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/Trainer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/MarkovModel.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/DynamicProgramming.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/Trainer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/Utilities.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/HMM/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/KGML_vis.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/Comparative.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/Distribution.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/BasicChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/Comparative.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/DisplayRepresentation.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/Distribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/KGML_vis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Graphics/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo/__pycache__/Record.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Geo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/Record.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/Scanner.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/Scanner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/GenBank/utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Prosite.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Prodoc.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/Enzyme.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/Prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/Prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/ScanProsite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/ExPASy/cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/__pycache__/Parser.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/XSDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/XSDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/taxon.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/section.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/references.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/phrase.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/para.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/notat.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/math.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/list.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/link.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isotech.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isopub.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isonum.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomscr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomopf.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isolat2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isolat1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isodia.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isobox.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamso.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/format.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esummary_gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/esearch.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/epost.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/elink.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/einfo.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/egquery.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/display.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/default-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/common.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/chars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/backmatter.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NSE.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/Parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Entrez/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/Primer3.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/Applications.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/Primer3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/PrimerSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Emboss/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/PDBData.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/IUPACData.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/CodonTable.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/IUPACData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/PDBData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Data/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Compass/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Compass/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/codonalignment.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/codonseq.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/codonalignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/codonalign/codonseq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/clustermodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/cluster.h -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/cluster.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Cluster/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/CAPS/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/CAPS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/NCBIWWW.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/Applications.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/NCBIXML.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/Record.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/NCBIWWW.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Blast/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Application/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Application/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Alphabet/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/NexusIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MsfIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MauveIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/MafIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/FastaIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/Interfaces.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/MafIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/MsfIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/StockholmIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/AlignIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/analysis.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/tabular.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/stockholm.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/sam.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/phylip.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/nexus.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/msf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/mauve.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/hhr.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/exonerate.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/emboss.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/clustal.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/psl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigpsl.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigmaf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bigbed.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/bed.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/a2m.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/maf.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/interfaces.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/chain.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/AlignInfo.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_pairwisealigner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/_codonaligner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/TRANS -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/STR -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/RISLER -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/RAO -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MEGABLAST -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/JONES -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/FENG -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLASTP -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BLASTN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/substitution_matrices/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Prank.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_ClustalOmega.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Clustalw.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Dialign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_MSAProbs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Mafft.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Prank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Probcons.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_TCoffee.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/Applications/_Muscle.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/analysis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Align/tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy/__pycache__/CelFile.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy/CelFile.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Affy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/MaxEntropy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/Seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.12/build/Bio/pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_translate.py to test_translate.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_seq.py to test_seq.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_prosite.py to test_prosite.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_motifs.py to test_motifs.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_kNN.py to test_kNN.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_geo.py to test_geo.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_align.py to test_align.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Phd.py to test_Phd.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PQR.py to test_PQR.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Selection.py to test_PDB_Selection.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_QCPSuperimposer.py to test_PDB_QCPSuperimposer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PSEA.py to test_PDB_PSEA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDB_CEAligner.py to test_PDB_CEAligner.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NMR.py to test_NMR.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Medline.py to test_Medline.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_File.py to test_File.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Compass.py to test_Compass.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Application.py to test_Application.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_tabular.py to test_Align_tabular.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_stockholm.py to test_Align_stockholm.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_sam.py to test_Align_sam.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_psl.py to test_Align_psl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_phylip.py to test_Align_phylip.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_nexus.py to test_Align_nexus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_msf.py to test_Align_msf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_mauve.py to test_Align_mauve.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_maf.py to test_Align_maf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_hhr.py to test_Align_hhr.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_fasta.py to test_Align_fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_exonerate.py to test_Align_exonerate.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_emboss.py to test_Align_emboss.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_codonalign.py to test_Align_codonalign.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_clustal.py to test_Align_clustal.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_chain.py to test_Align_chain.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigpsl.py to test_Align_bigpsl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigmaf.py to test_Align_bigmaf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bigbed.py to test_Align_bigbed.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_bed.py to test_Align_bed.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_a2m.py to test_Align_a2m.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Align_Alignment.py to test_Align_Alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Affy.py to test_Affy.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/test_Ace.py to test_Ace.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/run_tests.py to run_tests.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/requires_internet.py to requires_internet.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/Loader.py to Loader.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/BioSQL/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_io.py to _io.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqIO/_index.py to _index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_index.py to _index.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Des.py to Des.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/alignace.py to alignace.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/mast.py to mast.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/matrix.py to matrix.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/meme.py to meme.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/minimal.py to minimal.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/pfm.py to pfm.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/transfac.py to transfac.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/motifs/xms.py to xms.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Medline/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Atom.py to Atom.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Chain.py to Chain.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Dice.py to Dice.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Entity.py to Entity.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Model.py to Model.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Residue.py to Residue.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/SASA.py to SASA.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Selection.py to Selection.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Structure.py to Structure.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/cealign.py to cealign.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/qcprot.py to qcprot.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/vectors.py to vectors.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/REST.py to REST.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/HMM/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/Record.py to Record.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Geo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/Record.py to Record.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/GenBank/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/PDBData.py to PDBData.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Compass/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/Applications.py to Applications.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/Record.py to Record.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Blast/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Application/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/a2m.py to a2m.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/analysis.py to analysis.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bed.py to bed.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigbed.py to bigbed.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigmaf.py to bigmaf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/bigpsl.py to bigpsl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/chain.py to chain.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/clustal.py to clustal.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/emboss.py to emboss.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/exonerate.py to exonerate.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/hhr.py to hhr.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/interfaces.py to interfaces.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/maf.py to maf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/mauve.py to mauve.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/msf.py to msf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/nexus.py to nexus.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/phylip.py to phylip.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/psl.py to psl.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/sam.py to sam.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/stockholm.py to stockholm.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Align/tabular.py to tabular.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Affy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/File.py to File.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/Seq.py to Seq.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/_utils.py to _utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/bgzf.py to bgzf.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/kNN.py to kNN.cpython-312.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/Bio/pairwise2.py to pairwise2.cpython-312.pyc running install_egg_info Copying biopython.egg-info to /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.12/dist-packages/biopython-1.83.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running build_ext running install_lib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsabYlRBS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsaIBvujl copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/output.best.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/output.best.fas -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_translate.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_seq.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_samtools_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prosite.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prodoc.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phyml_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype_fit.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_aligner.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2_no_C.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/pairwise2_testCases.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_kNN.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_geo.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_codonalign.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_cellosaurus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_bgzf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align_substitution_matrices.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Uniprot.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniProt_GOA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniGene.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TreeConstruction.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TogoWS.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TCoffee_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SwissProt.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SffIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Seq_objs.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqUtils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqRecord.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_write.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_features.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Gck.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqFeature.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_write.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_model.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/search_tests_common.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SVDSuperimposer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Scop.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Residues.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Raf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Hie.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Dom.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Des.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Cla.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Astral.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Restriction.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_RCSBFormats.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ProtParam.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Probcons_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Prank_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_networkx.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_NeXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_CDAO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PhyloXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phd.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Pathway.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PQR.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_vectors.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_internal_coords.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Superimposer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Selection.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SMCRA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SASA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_QCPSuperimposer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PSEA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_NACCESS.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_KDTree.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Exposure.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Disordered.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Dice.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_DSSP.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_CEAligner.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDBList.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_yn00.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_codeml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_baseml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Nexus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NaiveBayes.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NMR.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_qblast.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBIXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Muscle_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Medline.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MarkovModel.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Mafft_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MafIO_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_LogisticRegression.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KeyWList.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_nographics.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMGeneral.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMCasino.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsGeneral.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsDistribution.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsChromosome.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenomeDiagram.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenBank.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_File.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Fasttree_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ExPASy.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Enzyme.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_parser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EmbossPrimer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Emboss.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EMBL_unittest.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Dialign_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Consensus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Compass.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ColorSpiral.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CodonTable.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Cluster.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Clustalw_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Chi2.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CAPS.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Blast_Record.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/seq_tests_common.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BWA_tool.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Application.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_tabular.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_stockholm.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_sam.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_psl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_phylip.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_nexus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_msf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_mauve.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_maf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_hhr.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_fasta.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_exonerate.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_emboss.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_codonalign.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_clustal.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_chain.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigpsl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigmaf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigbed.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bed.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_a2m.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_Alignment.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignInfo.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_convert.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Affy.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Ace.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/__pycache__/requires_internet.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Muscle_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_translate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_samtools_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_phyml_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_phenotype_fit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_phenotype.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_pairwise_alignment_map.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_pairwise_aligner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_pairwise2_no_C.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_motifs_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_motifs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_geo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_codonalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_align_substitution_matrices.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_align.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Uniprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_UniProt_GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_UniGene.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_TogoWS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_TCoffee_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SwissProt.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Seq_objs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_write.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_features.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Xdna.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SnapGene.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SeqXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Insdc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Gck.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_write.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SVDSuperimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Scop.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Astral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_RCSBFormats.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Probcons_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Prank_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phylo_networkx.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phylo_matplotlib.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phylo_NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phylo_CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phylo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PQR.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_SMCRA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_QCPSuperimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_KDTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Exposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Disordered.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDB_CEAligner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PAML_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PAML_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_PAML_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_NMR.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_NCBI_qblast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_NCBI_BLAST_tools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Medline.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Mafft_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_MafIO_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KGML_nographics.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KEGG_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_KEGG.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_HMMGeneral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_HMMCasino.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_GraphicsGeneral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_GraphicsDistribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_GraphicsChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_GenomeDiagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_GenBank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Fasttree_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_ExPASy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Entrez_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Entrez_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Entrez.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_EmbossPrimer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_EMBL_unittest.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Dialign_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Compass.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Cluster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Clustalw_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_ClustalOmega_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_CAPS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Blast_Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_psycopg2_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_BWA_tool.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Application.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_codonalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Align_Alignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_convert.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_AlignIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Affy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/test_Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/seq_tests_common.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/search_tests_common.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/run_tests.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/requires_internet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate_2.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/Plates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate_2.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/phenotype/BadPlate.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/pairwise2_testCases.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/msf/W_prot.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/msf/DOA_prot.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/transfac.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/minimal_test.meme -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/meme.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/meme.adh.classic.oops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/fourrows.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/fourcolumns.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/alignace.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/abdb.xms -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/SRF.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/REB1.pfm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/MA0056.1.transfac -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/motifs/Arnt.sites -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/common_BioSQL_online.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/common_BioSQL.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/pro5.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/pro4.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/pro3.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/pro2.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/pro1.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl5.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl4.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl3.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl2.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_pro.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_nucl.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/drosophila.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/codonalign/adh.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/biosql.ini.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/biosql.ini.appveyor -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-c.xprt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-b.xdna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-a.xdna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gaf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_human_sample.gpi -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniGene/Mdm_partial.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniGene/Hs.2.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/UniGene/Eca.1.2425.data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.long.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.littleendian.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.bigendian.2bit -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/upgma.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/trees.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/test.log -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/strict_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/pars3.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj_min.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/msa.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/majority_ref.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/consensus_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/adam_refs.tre -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni003 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni002 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp016 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp015 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp013 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp012 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.rdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.list -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.gff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/UniRef90_P99999.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/R5HY77.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q7Z739.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13454.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P97881.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P84001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P68308.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P62258.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60904.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60137.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P39896.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P16235.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0CK95.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0A186.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/P04439.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/O95832.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/O23729.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAltAADistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAADistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_freq.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_count.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/acc_rep_mat.pik -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SubsMat/aaDistrib.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/simple.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam5.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam4.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam3.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam2.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam1.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam9.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam8.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam7.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam6.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam5.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam4.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam3.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam2.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam1.seed.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/globins45.ali -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/funny.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/example_nonstandardannotations.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/example.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath3.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath2.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath1.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-f.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-e.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-d.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SnapGene/pFA-KanMX4.dna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/rna_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/protein_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/global_species_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/dna_example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/sam2.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/sam1.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/readme.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_refresh.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2_sorted.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1_sorted.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1.bam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Saf/saf1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/testDom.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/raftest.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.des.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/paired.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/greek.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Registry/seqs.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Registry/bt001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Registry/EDD_RAT.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.htm -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/zero_length.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/tricky.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_example.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_93.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_original_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_faked.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example.qual -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/example.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_title.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_tabs.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_spaces.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_short_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_vtab.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_tab.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_space.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_null.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_escape.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_del.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_no_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_long_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_seq.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_qual.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Quality/error_diff_ids.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00546.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00488.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00432.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00165.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00159.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00107.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo3.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo2.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/c3space.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/c3line.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/c2space.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/c2line.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/big.gen -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PopGen/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/made_up.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/example.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/distribution.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/bcl_2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PhyloXML/apaf.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/two.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/three.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/six.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/random.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/one.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced2.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/hennigian.phy -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/four.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phylip/five.dat -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phd/phd_solexa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phd/phd_454 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phd/phd2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Phd/phd1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PQR/1A80.pqr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/occupancy.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/lib_10_z_5.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/ions.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/header.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/disordered.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/d256ba_.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/alignment_file.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/Wilke_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/Sander_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/Miller_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/Ahmad_RASA.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/7DDO.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN_aligned.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/6WQA.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/4Q9R_min.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/3JQH.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2n0n_M1.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2OFG.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG_noheader.dssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.dssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1MOM_min.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1AS5.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.xyzr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.rsa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.pdb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.mmtf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.asa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PDB/1A7G.cif -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/gen_results.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/species.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/bad.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Results/bad_results.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/species.tree -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad3.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad2.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad1.ctl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/longnames.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednum.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednames.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/alignment.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_littleendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_bigendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_littleendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_bigendian.nib -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nib/test_even.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/test_Nexus_input.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/test.new -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/int_node_labels.nwk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/codonposset.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/bats.nex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/repeat.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/enolase.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/trees.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/trees-uris.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/treebase-record.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/tolweb.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/timetree.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/taxa.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/sets.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/phenoscape.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/nexml.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_types.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_taxa.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/edgelabels.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NeXML/characters.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NMR/out_example.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NMR/noed.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NBRF/clustalw.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NBRF/DMB_prot.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NBRF/DMA_nuc.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NBRF/Cw_prot.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/NBRF/B_nuc.pir -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta9.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta2.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta8.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta7.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta6.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta4.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta3.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/simple_short.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/mm9.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/equCab1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.bbcols -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.backbone -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Mauve/canFam2.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/wrong_version.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/unfinished.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/length_coords_mismatch.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/invalid.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/humor.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/corrupt.idx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/cnksr3.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/bug2453.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/MAF/bigMaf.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/map03070.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/map01100.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/map00950.rea -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/ko03070.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/ko01100.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00253.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00010.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/gene.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.new -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.irregular -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.4letter -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.sample -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.irregular -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/InterProScan/test_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_011.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Hmmer/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhpred_9590198.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/allx.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/7rbx_A_hhsearch_trunc.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits.hhr -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_transparency.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_transparency.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_colors.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_widths.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_original.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_original.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_7.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_1.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/simple_bar.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/multi_bar.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.eps -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/random_organism.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default.png -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph_c.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.svg -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/square_test.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/spiral_test.pdf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Graphics/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_series.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_platform.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_family.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_dual.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/GSM804.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/GSM700.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/GSM691.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/GSM645.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Geo/GSE16.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/tsa_acropora.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/tls_KDHP01000000.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq2.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/pri1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/pBAD30.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/origin_line.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/one_of.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/noref.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/no_origin_no_end.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/no_end_marker.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/negative_location.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/iro.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_structured_comment.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_product.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_misc_feature.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/gbvrl1_start.seq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/extra_keywords.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_version.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_accession.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/dbsource_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/blank_seq.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_loc_wrap.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/arab1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NT_019265.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NP_416719.gbwithparts -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.tsv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.ffn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/GU949562.1.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978_output.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/DS830848.gb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GenBank/1MRR_A.gp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Gck/artificial.gck -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GFF/multi.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802x.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802lc.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802.fna -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001422.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/tc_out.msf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/wisteria.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/sweetpea.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/rosemary.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/rose.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CC.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CB.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_lib.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/phlox.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output016.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output015.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output014.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output013.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output012.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output011.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output010.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output009.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output008.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output007.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output006.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output005.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output004.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output003.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output002.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/output001.m10 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CC.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CB.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_lib.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/lupine.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/loveliesbleeding.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/lavender.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/flowers.pro.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/fa01 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/f003 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/f002 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/f001 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/elderberry.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/dups.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/centaurea.nu -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/aster_no_wrap.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/aster.pro -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Fasta/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/FSSP/1cnv.fssp -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/ExtendedPhylip/primates.phyx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_none.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_cigar_fshifts2.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cigar_fshifts.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_vulgar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_cigar.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Exonerate/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Enzymes/valine.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Enzymes/proline.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Enzymes/lipoprotein.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Enzymes/lactate.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/taxonomy.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed3.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/protein.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/ncbi_mim.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/journals.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary9.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/espell.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/epost3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/epost2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/epost1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink8.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink7.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink6.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink5.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/elink1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo4.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo3.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery1.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_schemas.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_pmc.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Entrez/biosample.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse4.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/water.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/short.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/no_oligo.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_overhang.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_nobrief_multiple.pair -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_asis.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/needle.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_simple.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_pair.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/internal_oligo.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_reverse.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_forward.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.psearch -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/alignret.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK_full.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK.primer3 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/xx_after_co.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/patents.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/location_wrap.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/kipo_prt_sample.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/hla_3260_sample.imgt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/epo_prt_selection.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/embl_with_0_line.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/U87107.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/TRBG361.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/SC10H5.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/RepBase23.02.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/Human_contigs.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/DS830848.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited2.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/AE017046.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/AAA03323.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/A04195.imgt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/EMBL/101ma_no_coords.embl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Compass/comtest2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Compass/comtest1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Cluster/cyano.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Cluster/README -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/temp horses.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/protein.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/promals3d.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/opuntia.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/odd_consensus.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/hedgehog.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.a2m -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/CDAO/test.cdao -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/rna.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/rn6ToRn7.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/rheMac8ToRheMac10.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_002.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_001.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_005.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_004.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_003.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_002.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_001.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_002.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_002.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/panTro6.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/panTro5ToPanTro6.over.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/panTro5ToPanTro6.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/panTro5.maf -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/panTro5.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/mm10ToMm39.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/mirna.pslx -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/hg38.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/hg19ToHg38.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/fasta_34.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/est.panTro5.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/est.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.sam -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/dna.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/calJac3ToCalJac4.chain -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.psl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigbed_extended.littleendian.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigbed_extended.bigendian.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigPsl.cds -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigPsl.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bigPsl.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bedExample2.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bb -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.as -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/balAcu1.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blat/CAG33136.1.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_wait.html -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_result.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_empty.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_pcr.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_orchid.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_disco.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mock_actin.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.tab -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Blast/README.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BioSQL/cor6_6.db -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-pg.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/rn7.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/rheMac10.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/pig.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/pig.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/panTro6.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/mm39.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/hg38.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/hg38.chrom.sizes -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/cow.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/cow.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/calJac4.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.fa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v4_example.CEL -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v3_example.CEL -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Ace/seq.cap.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Ace/contig1.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Ace/consed_sample.ace -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/test_data -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/test.fsa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/nonascii_encoding.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/no_smpl1.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/fake.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/empty.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/A6_1-DB3.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/3730.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/3100.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/Abi/310.ab1 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Tests/.coveragerc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pairwise2.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_msa.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pairwise.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.aux -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pairwise2.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pairwise.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_msa.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/Tutorial.tex -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/www_blast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/swissprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/simple.dnd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.dnd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.aln -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/nmr/simplepredict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/nmr/noed.xpk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/my_blat.psl -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/my_blast.xml -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/m_cold.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.gz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bgz -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.fasta -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/fasta_iterator.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/fasta_dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ec_5.4.2.2.txt -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/clustal_run.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/beta.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/alpha.faa -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/Plates.csv -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/PF05371_seed.sth -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Doc/examples/ACT_example.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins/linux creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/methods creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/mcoffee creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/cache creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/home/.cache/matplotlib/fontlist-v330.json -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/matplotlib creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/DBUtils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/Loader.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeqDatabase.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeq.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/BioSeq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/BioSeqDatabase.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/DBUtils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/Loader.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/BioSQL/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/MaxEntropy.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/pairwise2.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/kNN.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/NaiveBayes.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/MarkovModel.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/LogisticRegression.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/bgzf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqFeature.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqRecord.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/Seq.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/File.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/py.typed -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/cpairwise2module.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/GOA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt/GOA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniGene/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/UniGene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Consensus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAOIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NexusIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Newick.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NewickIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/BaseTree.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_io.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_paml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/baseml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/chi2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/codeml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/yn00.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Fasttree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Phyml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Raxml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/BaseTree.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAOIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Consensus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/Newick.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/NewickIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXMLIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/TreeConstruction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/_cdao_owl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/_io.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Phylo/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/TogoWS/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/TogoWS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/KeyWList.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt/KeyWList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SwissProt/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Phd.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Ace.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_bwa.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_samtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Ace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/Phd.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Sequencing/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/lcc.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CheckSum.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/MeltingTemp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParamData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqUtils/lcc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TabIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SwissIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SffIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PirIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/QualityIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PhdIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PdbIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/NibIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/IgIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/GckIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AceIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/Interfaces.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AbiIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/AbiIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/AceIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/GckIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/IgIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/NibIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/PdbIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/PhdIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/PirIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/QualityIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/SeqXmlIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/SffIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/SnapGeneIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/SwissIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/TabIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/TwoBitIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/UniprotIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/XdnaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/BlatIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_index.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_utils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hit.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/_base.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/query.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/_base.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hit.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hsp.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/query.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlatIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_index.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SearchIO/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Raf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Dom.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Hie.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Residues.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Cla.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Des.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Cla.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Des.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Dom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Hie.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Raf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/Residues.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SCOP/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/PrintFormat.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/PrintFormat.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction_Dictionary.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Restriction/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/Controller.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/EasyController.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/FileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PopGen/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/pm_fitting.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/phen_micro.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/phen_micro.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/phenotype/pm_fitting.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/MultiGraph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Pathway/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/NOEtools.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/xpktools.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/NOEtools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NMR/xpktools.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nodes.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Trees.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/StandardData.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nexus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/Nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/Nodes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/StandardData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/Trees.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Nexus/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/thresholds.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/xms.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/minimal.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/meme.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/mast.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/pfm.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/clusterbuster.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/alignace.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/transfac.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/matrix.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/db.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/db.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/applications/_xxmotif.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/alignace.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/clusterbuster.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/mast.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/matrix.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/meme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/minimal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/pfm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/thresholds.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/transfac.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/motifs/xms.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Medline/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Medline/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SCADIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PICIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_rebuild.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PSEA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NACCESS.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SASA.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NeighborSearch.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Dice.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/FragmentMapper.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/HSExposure.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ResidueDepth.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/DSSP.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureAlignment.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/qcprot.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/cealign.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Superimposer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Selection.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/mmcifio.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Polypeptide.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBList.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIFParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Residue.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Chain.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_data.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/vectors.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Atom.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/internal_coords.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Model.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Entity.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Structure.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureBuilder.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBExceptions.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ccealignmodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/AbstractPropertyMap.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Atom.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/DSSP.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Dice.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Entity.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/FragmentMapper.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/HSExposure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIF2Dict.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIFParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Model.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/NACCESS.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/NeighborSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PDBExceptions.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PDBIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PDBList.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PDBParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PICIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/PSEA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Residue.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ResidueDepth.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/SASA.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/SCADIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Selection.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Structure.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/StructureAlignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/StructureBuilder.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/Superimposer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/cealign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ic_data.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/ic_rebuild.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/internal_coords.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmcifio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/parse_pdb_header.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/qcprot.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/vectors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/DefaultParser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/mmtfio.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/REST.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/REST.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/KEGG/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Utilities.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Trainer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/MarkovModel.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/DynamicProgramming.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/Trainer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/Utilities.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/HMM/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/KGML_vis.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Comparative.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Distribution.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/BasicChromosome.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/ColorSpiral.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/Comparative.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/DisplayRepresentation.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/Distribution.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/KGML_vis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Graphics/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/Record.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Geo/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Record.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Scanner.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/Scanner.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/GenBank/utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prosite.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prodoc.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Enzyme.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/Enzyme.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prodoc.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prosite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/ScanProsite.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/ExPASy/cellosaurus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/Parser.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/taxon.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/section.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/references.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/phrase.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/para.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/notat.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/math.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/list.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/link.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isotech.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isopub.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isonum.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomscr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomopf.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isodia.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isobox.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamso.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/format.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esummary_gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esearch.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/epost.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/elink.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/einfo.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/egquery.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/display.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/common.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/chars.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/backmatter.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/Parser.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Entrez/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Primer3.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Applications.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/Primer3.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/PrimerSearch.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Emboss/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/PDBData.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/IUPACData.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/CodonTable.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/CodonTable.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/IUPACData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/PDBData.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Data/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Compass/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Compass/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonalignment.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonseq.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/codonalignment.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/codonalign/codonseq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/clustermodule.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.h -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Cluster/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/CAPS/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/CAPS/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIWWW.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Applications.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIXML.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Record.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/Applications.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIWWW.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIXML.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/Record.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Blast/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Application/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Application/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Alphabet/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/NexusIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MsfIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MauveIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MafIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/FastaIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/Interfaces.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/ClustalIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/EmbossIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/FastaIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/Interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/MafIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/MauveIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/MsfIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/NexusIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/PhylipIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/StockholmIO.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/AlignIO/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/analysis.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/tabular.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/stockholm.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/sam.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/phylip.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/nexus.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/msf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/mauve.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/hhr.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/fasta.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/exonerate.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/emboss.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/clustal.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/psl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigpsl.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigmaf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigbed.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bed.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/a2m.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/maf.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/interfaces.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/chain.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/AlignInfo.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_pairwisealigner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/_codonaligner.c -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/TRANS -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/STR -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RISLER -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RAO -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MEGABLAST -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JONES -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/FENG -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTP -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTN -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Prank.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_ClustalOmega.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Clustalw.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Dialign.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_MSAProbs.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Mafft.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Prank.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Probcons.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_TCoffee.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Muscle.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/AlignInfo.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/a2m.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/analysis.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/bed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/bigbed.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/bigmaf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/bigpsl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/chain.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/clustal.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/emboss.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/exonerate.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/fasta.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/hhr.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/interfaces.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/maf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/mauve.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/msf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/nexus.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/phylip.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/psl.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/sam.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/stockholm.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Align/tabular.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy creating /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/CelFile.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy/CelFile.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Affy/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/File.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/LogisticRegression.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/MarkovModel.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/MaxEntropy.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/NaiveBayes.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/Seq.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqFeature.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/SeqRecord.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/__init__.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/_utils.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/bgzf.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/kNN.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/reproducible-path/python-biopython-1.83+dfsg1/.pybuild/cpython3_3.11/build/Bio/pairwise2.py -> /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_translate.py to test_translate.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_seq.py to test_seq.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prosite.py to test_prosite.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs.py to test_motifs.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_kNN.py to test_kNN.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_geo.py to test_geo.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align.py to test_align.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phd.py to test_Phd.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PQR.py to test_PQR.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Selection.py to test_PDB_Selection.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_QCPSuperimposer.py to test_PDB_QCPSuperimposer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PSEA.py to test_PDB_PSEA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_CEAligner.py to test_PDB_CEAligner.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NMR.py to test_NMR.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Medline.py to test_Medline.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_File.py to test_File.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Compass.py to test_Compass.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Application.py to test_Application.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_tabular.py to test_Align_tabular.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_stockholm.py to test_Align_stockholm.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_sam.py to test_Align_sam.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_psl.py to test_Align_psl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_phylip.py to test_Align_phylip.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_nexus.py to test_Align_nexus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_msf.py to test_Align_msf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_mauve.py to test_Align_mauve.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_maf.py to test_Align_maf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_hhr.py to test_Align_hhr.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_fasta.py to test_Align_fasta.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_exonerate.py to test_Align_exonerate.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_emboss.py to test_Align_emboss.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_codonalign.py to test_Align_codonalign.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_clustal.py to test_Align_clustal.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_chain.py to test_Align_chain.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigpsl.py to test_Align_bigpsl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigmaf.py to test_Align_bigmaf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigbed.py to test_Align_bigbed.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bed.py to test_Align_bed.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_a2m.py to test_Align_a2m.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_Alignment.py to test_Align_Alignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Affy.py to test_Affy.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Ace.py to test_Ace.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/run_tests.py to run_tests.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/requires_internet.py to requires_internet.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/Loader.py to Loader.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_io.py to _io.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/_index.py to _index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_index.py to _index.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Des.py to Des.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/alignace.py to alignace.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/mast.py to mast.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/matrix.py to matrix.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/meme.py to meme.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/minimal.py to minimal.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/pfm.py to pfm.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/transfac.py to transfac.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/xms.py to xms.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Atom.py to Atom.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Chain.py to Chain.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Dice.py to Dice.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Entity.py to Entity.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Model.py to Model.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Residue.py to Residue.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SASA.py to SASA.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Selection.py to Selection.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Structure.py to Structure.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/cealign.py to cealign.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/qcprot.py to qcprot.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/vectors.py to vectors.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/REST.py to REST.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/Record.py to Record.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Record.py to Record.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/utils.py to utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/PDBData.py to PDBData.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Applications.py to Applications.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Record.py to Record.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/a2m.py to a2m.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bed.py to bed.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigbed.py to bigbed.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigmaf.py to bigmaf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigpsl.py to bigpsl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/chain.py to chain.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/clustal.py to clustal.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/emboss.py to emboss.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/exonerate.py to exonerate.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/fasta.py to fasta.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/hhr.py to hhr.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/interfaces.py to interfaces.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/maf.py to maf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/mauve.py to mauve.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/msf.py to msf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/nexus.py to nexus.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/phylip.py to phylip.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/psl.py to psl.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/sam.py to sam.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/stockholm.py to stockholm.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/tabular.py to tabular.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/File.py to File.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Seq.py to Seq.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/_utils.py to _utils.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/bgzf.py to bgzf.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/kNN.py to kNN.cpython-311.pyc byte-compiling /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/Bio/pairwise2.py to pairwise2.cpython-311.pyc running install_egg_info Copying biopython.egg-info to /build/reproducible-path/python-biopython-1.83+dfsg1/debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.83.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_install -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython//usr/lib/python3.11/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.11/dist-packages/Bio debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.83.egg-info debian/python3-biopython//usr/lib/python3.11/dist-packages/ install -m0755 -d debian/python3-biopython//usr/lib/python3.12/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.12/dist-packages/Bio debian/tmp/usr/lib/python3.12/dist-packages/biopython-1.83.egg-info debian/python3-biopython//usr/lib/python3.12/dist-packages/ install -m0755 -d debian/python3-biopython-sql//usr/lib/python3.11/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.11/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.11/dist-packages/ install -m0755 -d debian/python3-biopython-sql//usr/lib/python3.12/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.12/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.12/dist-packages/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_installdocs -i dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biopython-1.83+dfsg1/debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/python-biopython-1.83+dfsg1/debian/python-biopython-doc/usr/share/doc/python-biopython-doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -m0755 -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/python-biopython-doc.biopython-tutorial install -m0755 -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality/example.fastq.gz debian/tmp/usr/lib/python3.12/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /build/reproducible-path/python-biopython-1.83+dfsg1/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' grep: ../Bio/__init__.py: No such file or directory File "", line 1 ; print('dev' if 'dev' in __version__ else __version__) ^ SyntaxError: invalid syntax ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux rm -rf _minted-Tutorial make[2]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython3-biopython-sql install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/.debhelper/generated/python3-biopython-sql/dh_installchangelogs.dch.trimmed debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-biopython-sql/dh_installchangelogs.news.trimmed debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/NEWS.Debian install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.dch.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.news.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/NEWS.Debian install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.dch.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.news.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/NEWS.Debian dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:166: skipping package python-biopython-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:204: processing package python3-biopython... D: dh_python3 fs:50: moving files from debian/python3-biopython/usr/lib/python3.11/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biopython/usr/lib/python3.12/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.83.egg-info/requires.txt'}, 'egg-info': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.83.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biopython D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3 (>= 3.11~)', 'python3 (<< 3.13)', 'python3-numpy', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:204: processing package python3-biopython-sql... D: dh_python3 fs:50: moving files from debian/python3-biopython-sql/usr/lib/python3.11/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-biopython-sql/usr/lib/python3.12/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-biopython-sql D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython install -m0755 -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/w3c-sgml-lib/schema/dtd/XX-MathML2-20031104/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1713353548 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_white.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/1a8o-ca-plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phe-pairs-3pbl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python-biopython-doc cd debian/python3-biopython cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/build/reproducible-path/python-biopython-1.83+dfsg1' gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian cd '/build/reproducible-path/python-biopython-1.83+dfsg1' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_msa.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pairwise.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pairwise2.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex usr/share/doc/python-biopython-doc/Doc/api/conf.py usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/biopdb_faq.tex usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/doc.tex usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/NEWS.Debian usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/Align/cow.fa usr/share/doc/python-biopython-doc/Tests/Align/hg38.chrom.sizes usr/share/doc/python-biopython-doc/Tests/Align/pig.fa usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blat/balAcu1.fa usr/share/doc/python-biopython-doc/Tests/Blat/bed12.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed3.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed4.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed5.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed6.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed7.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed8.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed9.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigPsl.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbed_extended.bigendian.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbed_extended.littleendian.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbedtest.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbedtest.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/dna.fa usr/share/doc/python-biopython-doc/Tests/Blat/dna_rna.bb usr/share/doc/python-biopython-doc/Tests/Blat/dna_rna.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/hg38.fa usr/share/doc/python-biopython-doc/Tests/Blat/panTro5.fa usr/share/doc/python-biopython-doc/Tests/Blat/panTro6.fa usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_001.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_001.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_003.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_003.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_004.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_004.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_005.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_005.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_001.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_001.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_002.psl.bb usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/Cluster/cyano.txt usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/EMBL/hla_3260_sample.imgt usr/share/doc/python-biopython-doc/Tests/EMBL/kipo_prt_sample.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/emboss_pair_aln_full_blank_line.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_overhang.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/esummary9.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed5.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed6.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/README.txt usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/nucleotide_lib.fa usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_fuzzy.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_accession.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/empty_version.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_structured_comment.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhsearch.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/7rbx_A_hhsearch_trunc.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/allx.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhpred_9590198.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_011.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample chmod a-x usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MAF/bundle_without_target.bb usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.bb usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_test.bb usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_long-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A7G.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.xyzr usr/share/doc/python-biopython-doc/Tests/PDB/1AS5.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2n0n_M1.pdb usr/share/doc/python-biopython-doc/Tests/PDB/3JQH.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/6WQA.cif usr/share/doc/python-biopython-doc/Tests/PDB/7CFN.cif usr/share/doc/python-biopython-doc/Tests/PDB/7CFN_aligned.cif usr/share/doc/python-biopython-doc/Tests/PDB/7DDO.pdb usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.cif usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/PDB/lib_10_z_5.txt usr/share/doc/python-biopython-doc/Tests/PQR/1A80.pqr usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SnapGene/pFA-KanMX4.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-d.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-e.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-f.dna usr/share/doc/python-biopython-doc/Tests/Stockholm/globins45.ali usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam3.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam4.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam5.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam7.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam8.seed.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/O95832.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P04439.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0A186.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0CK95.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P16235.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60137.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60904.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P62258.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P68308.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P97881.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13454.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q7Z739.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/R5HY77.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/UniRef90_P99999.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/UniProt/gene_association.goa_yeast.1.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gpa.59.gpa usr/share/doc/python-biopython-doc/Tests/UniProt/gp_information.goa_yeast.28.gpi usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophila.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/common_BioSQL_online.py usr/share/doc/python-biopython-doc/Tests/motifs/abdb.xms usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.INO_up800.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.adh.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.farntrans5.classic.anr.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.psp_test.classic.zoops.xml usr/share/doc/python-biopython-doc/Tests/msf/DOA_prot.msf usr/share/doc/python-biopython-doc/Tests/pairwise2_testCases.py usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py usr/share/doc/python-biopython-doc/Tests/test_Affy.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Align_Alignment.py usr/share/doc/python-biopython-doc/Tests/test_Align_a2m.py chmod a-x usr/share/doc/python-biopython-doc/Tests/test_Align_bed.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigbed.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigmaf.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigpsl.py usr/share/doc/python-biopython-doc/Tests/test_Align_chain.py usr/share/doc/python-biopython-doc/Tests/test_Align_clustal.py usr/share/doc/python-biopython-doc/Tests/test_Align_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_Align_emboss.py usr/share/doc/python-biopython-doc/Tests/test_Align_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_Align_fasta.py usr/share/doc/python-biopython-doc/Tests/test_Align_hhr.py usr/share/doc/python-biopython-doc/Tests/test_Align_maf.py usr/share/doc/python-biopython-doc/Tests/test_Align_mauve.py usr/share/doc/python-biopython-doc/Tests/test_Align_msf.py usr/share/doc/python-biopython-doc/Tests/test_Align_nexus.py usr/share/doc/python-biopython-doc/Tests/test_Align_phylip.py usr/share/doc/python-biopython-doc/Tests/test_Align_psl.py usr/share/doc/python-biopython-doc/Tests/test_Align_sam.py usr/share/doc/python-biopython-doc/Tests/test_Align_stockholm.py usr/share/doc/python-biopython-doc/Tests/test_Align_tabular.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_CAPS.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_File.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NMR.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Disordered.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypeptide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SASA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Selection.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_TwoBitIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_alignment_map.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_GraphicsBitmaps.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian gzip -9nf usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_appendix.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_blast.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cluster.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_contributing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_cookbook.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_entrez.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_graphics.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_introduction.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_kegg.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_motifs.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_msa.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pairwise.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pairwise2.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_pdb.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phenotype.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_phylo.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_popgen.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_quick_start.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_searchio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_annot.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seq_objects.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_seqio.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_testing.tex usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_uniprot.tex usr/share/doc/python-biopython-doc/Doc/api/conf.py usr/share/doc/python-biopython-doc/Doc/biopdb_faq.pdf usr/share/doc/python-biopython-doc/Doc/biopdb_faq.tex usr/share/doc/python-biopython-doc/Doc/cookbook/Restriction/Restriction.md usr/share/doc/python-biopython-doc/Doc/doc.rst usr/share/doc/python-biopython-doc/Doc/doc.tex usr/share/doc/python-biopython-doc/Doc/examples/ACT_example.py usr/share/doc/python-biopython-doc/Doc/examples/Plates.csv usr/share/doc/python-biopython-doc/Doc/examples/Proux_et_al_2002_Figure_6.py usr/share/doc/python-biopython-doc/Doc/examples/ec_5.4.2.2.txt usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.fasta usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.bgz usr/share/doc/python-biopython-doc/Doc/examples/my_blast.xml usr/share/doc/python-biopython-doc/Doc/examples/nmr/simplepredict.py usr/share/doc/python-biopython-doc/Doc/examples/opuntia.aln usr/share/doc/python-biopython-doc/Doc/examples/opuntia.fasta usr/share/doc/python-biopython-doc/Doc/images/biopython_logo.pdf usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.pdf usr/share/doc/python-biopython-doc/Doc/images/smcra.eps usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.pdf usr/share/doc/python-biopython-doc/NEWS.Debian usr/share/doc/python-biopython-doc/Tests/Abi/310.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3100.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/3730.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/A6_1-DB3.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/empty.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/no_smpl1.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/nonascii_encoding.ab1 usr/share/doc/python-biopython-doc/Tests/Abi/test.fsa usr/share/doc/python-biopython-doc/Tests/Abi/test_data usr/share/doc/python-biopython-doc/Tests/Ace/consed_sample.ace usr/share/doc/python-biopython-doc/Tests/Ace/contig1.ace usr/share/doc/python-biopython-doc/Tests/Ace/seq.cap.ace usr/share/doc/python-biopython-doc/Tests/Align/cow.fa usr/share/doc/python-biopython-doc/Tests/Align/hg38.chrom.sizes usr/share/doc/python-biopython-doc/Tests/Align/pig.fa usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_1_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/HNSCC1_2_truncated.fastq usr/share/doc/python-biopython-doc/Tests/BWA/human_g1k_v37_truncated.fasta usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-mysql.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-pg.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/biosqldb-sqlite.sql usr/share/doc/python-biopython-doc/Tests/BioSQL/cor6_6.db usr/share/doc/python-biopython-doc/Tests/Blast/mirna.tab usr/share/doc/python-biopython-doc/Tests/Blast/mirna.xml usr/share/doc/python-biopython-doc/Tests/Blast/tab_2226_tblastn_011.txt usr/share/doc/python-biopython-doc/Tests/Blast/tab_2228_tblastx_001.txt usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml usr/share/doc/python-biopython-doc/Tests/Blast/wnts.xml.bgz usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2212L_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218L_rpsblast_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2218_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2222_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastn_006.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastp_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_blastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastn_005.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_003.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2226_tblastx_004.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastp_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_blastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastn_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001.xml usr/share/doc/python-biopython-doc/Tests/Blast/xml_2900_tblastx_001_v2.xml usr/share/doc/python-biopython-doc/Tests/Blat/balAcu1.fa usr/share/doc/python-biopython-doc/Tests/Blat/bed12.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed3.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed4.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed5.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed6.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed7.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed8.bb usr/share/doc/python-biopython-doc/Tests/Blat/bed9.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigPsl.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbed_extended.bigendian.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbed_extended.littleendian.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbedtest.bb usr/share/doc/python-biopython-doc/Tests/Blat/bigbedtest.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/dna.fa usr/share/doc/python-biopython-doc/Tests/Blat/dna_rna.bb usr/share/doc/python-biopython-doc/Tests/Blat/dna_rna.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/hg38.fa usr/share/doc/python-biopython-doc/Tests/Blat/panTro5.fa usr/share/doc/python-biopython-doc/Tests/Blat/panTro6.fa usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_001.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_001.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_003.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_003.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_004.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_004.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_005.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_34_005.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_001.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_001.psl.bb usr/share/doc/python-biopython-doc/Tests/Blat/psl_35_002.psl.bb usr/share/doc/python-biopython-doc/Tests/CDAO/test.cdao usr/share/doc/python-biopython-doc/Tests/Clustalw/hedgehog.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/promals3d.aln usr/share/doc/python-biopython-doc/Tests/Clustalw/protein.aln usr/share/doc/python-biopython-doc/Tests/Cluster/cyano.txt usr/share/doc/python-biopython-doc/Tests/CodonUsage/HighlyExpressedGenes.txt usr/share/doc/python-biopython-doc/Tests/EMBL/AAA03323.embl usr/share/doc/python-biopython-doc/Tests/EMBL/AE017046.embl usr/share/doc/python-biopython-doc/Tests/EMBL/Human_contigs.embl usr/share/doc/python-biopython-doc/Tests/EMBL/SC10H5.embl usr/share/doc/python-biopython-doc/Tests/EMBL/TRBG361.embl usr/share/doc/python-biopython-doc/Tests/EMBL/U87107.embl usr/share/doc/python-biopython-doc/Tests/EMBL/epo_prt_selection.embl usr/share/doc/python-biopython-doc/Tests/EMBL/hla_3260_sample.imgt usr/share/doc/python-biopython-doc/Tests/EMBL/kipo_prt_sample.embl usr/share/doc/python-biopython-doc/Tests/Emboss/NirK.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/NirK_full.primer3 usr/share/doc/python-biopython-doc/Tests/Emboss/emboss_pair_aln_full_blank_line.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_asis.txt usr/share/doc/python-biopython-doc/Tests/Emboss/needle_overhang.txt usr/share/doc/python-biopython-doc/Tests/Emboss/no_oligo.primer3 usr/share/doc/python-biopython-doc/Tests/Entrez/egquery1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/egquery2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/einfo3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink3.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/elink7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/esummary9.xml usr/share/doc/python-biopython-doc/Tests/Entrez/journals.xml usr/share/doc/python-biopython-doc/Tests/Entrez/ncbi_mim.xml usr/share/doc/python-biopython-doc/Tests/Entrez/nucleotide1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/protein.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed1.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed2.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed4.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed5.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed6.xml usr/share/doc/python-biopython-doc/Tests/Entrez/pubmed7.xml usr/share/doc/python-biopython-doc/Tests/Entrez/taxonomy.xml usr/share/doc/python-biopython-doc/Tests/Exonerate/README.txt usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_affine_local.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_cdna2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2coding.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_coding2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_est2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_genome2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ner.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2dna.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_protein2genome.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_m_ungapped_trans.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_22_q_multiple.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn usr/share/doc/python-biopython-doc/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn usr/share/doc/python-biopython-doc/Tests/ExtendedPhylip/primates.phyx usr/share/doc/python-biopython-doc/Tests/FSSP/1cnv.fssp usr/share/doc/python-biopython-doc/Tests/Fasta/nucleotide_lib.fa usr/share/doc/python-biopython-doc/Tests/Fasta/output001.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output002.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output003.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output007.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output008.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output009.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output011.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output012.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output013.m10 usr/share/doc/python-biopython-doc/Tests/Fasta/output016.m10 usr/share/doc/python-biopython-doc/Tests/GFF/NC_001422.gbk usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802lc.fna usr/share/doc/python-biopython-doc/Tests/GFF/NC_001802x.fna usr/share/doc/python-biopython-doc/Tests/GenBank/1MRR_A.gp usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/EU851978_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/HM138502_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/KF527485_output.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.faa usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NC_000932.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.ffn usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.fna usr/share/doc/python-biopython-doc/Tests/GenBank/NC_005816.gb usr/share/doc/python-biopython-doc/Tests/GenBank/NP_416719.gbwithparts usr/share/doc/python-biopython-doc/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/arab1.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_loc_wrap.gb usr/share/doc/python-biopython-doc/Tests/GenBank/bad_origin_wrap_fuzzy.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb usr/share/doc/python-biopython-doc/Tests/GenBank/cor6_6.gb.bgz usr/share/doc/python-biopython-doc/Tests/GenBank/empty_accession.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/empty_feature_qualifier.gb usr/share/doc/python-biopython-doc/Tests/GenBank/empty_version.gbk usr/share/doc/python-biopython-doc/Tests/GenBank/extra_keywords.gb usr/share/doc/python-biopython-doc/Tests/GenBank/gbvrl1_start.seq usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_locus_line_spacing.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_misc_feature.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_product.gb usr/share/doc/python-biopython-doc/Tests/GenBank/invalid_structured_comment.gb usr/share/doc/python-biopython-doc/Tests/GenBank/iro.gb usr/share/doc/python-biopython-doc/Tests/GenBank/negative_location.gb usr/share/doc/python-biopython-doc/Tests/GenBank/no_end_marker.gb usr/share/doc/python-biopython-doc/Tests/GenBank/noref.gb usr/share/doc/python-biopython-doc/Tests/GenBank/one_of.gb usr/share/doc/python-biopython-doc/Tests/GenBank/pBAD30.gb usr/share/doc/python-biopython-doc/Tests/GenBank/protein_refseq2.gb usr/share/doc/python-biopython-doc/Tests/GenBank/wrong_sequence_indent.gb usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_affy_chp.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_dual.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_family.txt usr/share/doc/python-biopython-doc/Tests/Geo/soft_ex_platform.txt usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhblits.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/2uvo_hhsearch.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/7rbx_A_hhsearch_trunc.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/allx.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhpred_9590198.hhr usr/share/doc/python-biopython-doc/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_30_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/domtab_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_20_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_22_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_23_hmmpfam_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_24_hmmpfam_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_006.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_007.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_008.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_009.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_010.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmscan_011.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_003.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_004.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_30_hmmsearch_005.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b1_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmscan_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_001.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_hmmsearch_002.out usr/share/doc/python-biopython-doc/Tests/Hmmer/text_31b2_phmmer_001.out usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/TAT_mase_nuc.txt usr/share/doc/python-biopython-doc/Tests/IntelliGenetics/VIF_mase-pro.txt usr/share/doc/python-biopython-doc/Tests/InterProScan/test_001.xml usr/share/doc/python-biopython-doc/Tests/KEGG/compound.sample usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.4letter usr/share/doc/python-biopython-doc/Tests/KEGG/enzyme.sample gzip -9nf usr/share/doc/python-biopython-doc/Tests/KEGG/ko00010.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko00253.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko01100.xml usr/share/doc/python-biopython-doc/Tests/KEGG/ko03070.xml usr/share/doc/python-biopython-doc/Tests/KEGG/map00950.rea usr/share/doc/python-biopython-doc/Tests/MAF/bundle_without_target.bb usr/share/doc/python-biopython-doc/Tests/MAF/corrupt.idx usr/share/doc/python-biopython-doc/Tests/MAF/humor.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.bb usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_bad.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.maf usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_mm9_chr10_big.mafindex usr/share/doc/python-biopython-doc/Tests/MAF/ucsc_test.bb usr/share/doc/python-biopython-doc/Tests/MAF/unfinished.idx usr/share/doc/python-biopython-doc/Tests/MAF/wrong_version.idx usr/share/doc/python-biopython-doc/Tests/Mauve/simple.fa usr/share/doc/python-biopython-doc/Tests/Mauve/simple.xmfa usr/share/doc/python-biopython-doc/Tests/Medline/pubmed_result2.txt usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta4.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta6.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta7.out usr/share/doc/python-biopython-doc/Tests/MetaTool/Meta8.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta2.out usr/share/doc/python-biopython-doc/Tests/MetaTool/meta9.out usr/share/doc/python-biopython-doc/Tests/NBRF/B_nuc.pir usr/share/doc/python-biopython-doc/Tests/NBRF/Cw_prot.pir usr/share/doc/python-biopython-doc/Tests/NBRF/clustalw.pir usr/share/doc/python-biopython-doc/Tests/NeXML/characters.xml usr/share/doc/python-biopython-doc/Tests/NeXML/timetree.xml usr/share/doc/python-biopython-doc/Tests/NeXML/treebase-record.xml usr/share/doc/python-biopython-doc/Tests/NeXML/trees.xml usr/share/doc/python-biopython-doc/Tests/Nexus/bats.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Heptascelio_no-states_10\+chars.nex usr/share/doc/python-biopython-doc/Tests/Nexus/vSysLab_Oreiscelio_discrete\+continuous.nex usr/share/doc/python-biopython-doc/Tests/PAML/Alignments/lysinYangSwanson2002.nuc usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/SE/SE-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/codeml/tree_regexp_versatility.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_1.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_3.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_4c.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_5.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_6.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_7.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out usr/share/doc/python-biopython-doc/Tests/PAML/Results/yn00/yn00_long-4_8.out usr/share/doc/python-biopython-doc/Tests/PAML/gen_results.py usr/share/doc/python-biopython-doc/Tests/PDB/1A7G.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.asa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.cif usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.pdb usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.rsa usr/share/doc/python-biopython-doc/Tests/PDB/1A8O.xyzr usr/share/doc/python-biopython-doc/Tests/PDB/1AS5.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.cif usr/share/doc/python-biopython-doc/Tests/PDB/1LCD.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2BEG.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2BEG_noheader.dssp usr/share/doc/python-biopython-doc/Tests/PDB/2OFG.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.cif usr/share/doc/python-biopython-doc/Tests/PDB/2XHE.pdb usr/share/doc/python-biopython-doc/Tests/PDB/2n0n_M1.pdb usr/share/doc/python-biopython-doc/Tests/PDB/3JQH.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.cif usr/share/doc/python-biopython-doc/Tests/PDB/4CUP.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.cif usr/share/doc/python-biopython-doc/Tests/PDB/4ZHL.mmtf usr/share/doc/python-biopython-doc/Tests/PDB/6WQA.cif usr/share/doc/python-biopython-doc/Tests/PDB/7CFN.cif usr/share/doc/python-biopython-doc/Tests/PDB/7CFN_aligned.cif usr/share/doc/python-biopython-doc/Tests/PDB/7DDO.pdb usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.cif usr/share/doc/python-biopython-doc/Tests/PDB/a_structure.pdb usr/share/doc/python-biopython-doc/Tests/PDB/dssp_xtra_Sander.txt usr/share/doc/python-biopython-doc/Tests/PDB/lib_10_z_5.txt usr/share/doc/python-biopython-doc/Tests/PQR/1A80.pqr usr/share/doc/python-biopython-doc/Tests/Phd/phd1 usr/share/doc/python-biopython-doc/Tests/PhyloXML/apaf.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/bcl_2.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/made_up.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/o_tol_332_d_dollo.xml usr/share/doc/python-biopython-doc/Tests/PhyloXML/phyloxml_examples.xml usr/share/doc/python-biopython-doc/Tests/PopGen/big.gen usr/share/doc/python-biopython-doc/Tests/PopGen/haplo.gen usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/pdoc00100.txt usr/share/doc/python-biopython-doc/Tests/Prosite/Doc/prosite.excerpt.doc usr/share/doc/python-biopython-doc/Tests/Prosite/ps00107.txt usr/share/doc/python-biopython-doc/Tests/Prosite/ps00432.txt usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_illumina.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_as_solexa.fastq usr/share/doc/python-biopython-doc/Tests/Quality/longreads_original_sanger.fastq usr/share/doc/python-biopython-doc/Tests/Registry/EDD_RAT.dat usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_end.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_at_start.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_index_in_middle.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_no_manifest.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.qual usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual usr/share/doc/python-biopython-doc/Tests/Roche/greek.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_greek_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/invalid_paired_E3MFGYR02.sff usr/share/doc/python-biopython-doc/Tests/Roche/paired.sff usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff.idx usr/share/doc/python-biopython-doc/Tests/Roche/triple_sff_rel_paths.idx usr/share/doc/python-biopython-doc/Tests/SCOP/raftest.txt usr/share/doc/python-biopython-doc/Tests/SamBam/bam1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam1_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2.bam usr/share/doc/python-biopython-doc/Tests/SamBam/bam2_sorted.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.bam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_header.sam usr/share/doc/python-biopython-doc/Tests/SamBam/ex1_refresh.bam usr/share/doc/python-biopython-doc/Tests/SamBam/sam1.sam usr/share/doc/python-biopython-doc/Tests/SamBam/sam2.sam usr/share/doc/python-biopython-doc/Tests/SnapGene/pFA-KanMX4.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-d.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-e.dna usr/share/doc/python-biopython-doc/Tests/SnapGene/sample-f.dna usr/share/doc/python-biopython-doc/Tests/Stockholm/globins45.ali usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam3.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam4.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam5.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam7.seed.txt usr/share/doc/python-biopython-doc/Tests/Stockholm/pfam8.seed.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/F2CXE6.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/O95832.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P04439.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0A186.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P0CK95.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P16235.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60137.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P60904.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P62258.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P68308.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/P97881.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13454.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/Q13639.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/Q7Z739.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/R5HY77.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/UniRef90_P99999.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.gff usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.rdf usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.txt usr/share/doc/python-biopython-doc/Tests/SwissProt/multi_ex.xml usr/share/doc/python-biopython-doc/Tests/SwissProt/sp016 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni001 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni002 usr/share/doc/python-biopython-doc/Tests/SwissProt/uni003 usr/share/doc/python-biopython-doc/Tests/UniGene/Eca.1.2425.data usr/share/doc/python-biopython-doc/Tests/UniGene/Hs.2.data usr/share/doc/python-biopython-doc/Tests/UniProt/gene_association.goa_yeast.1.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gaf usr/share/doc/python-biopython-doc/Tests/UniProt/goa_yeast.gpa.59.gpa usr/share/doc/python-biopython-doc/Tests/UniProt/gp_information.goa_yeast.28.gpi usr/share/doc/python-biopython-doc/Tests/codonalign/adh.aln usr/share/doc/python-biopython-doc/Tests/codonalign/drosophila.fasta usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_nucl.fa usr/share/doc/python-biopython-doc/Tests/codonalign/egfr_pro.aln usr/share/doc/python-biopython-doc/Tests/codonalign/nucl2.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl3.fa usr/share/doc/python-biopython-doc/Tests/codonalign/nucl4.fa usr/share/doc/python-biopython-doc/Tests/codonalign/pro2.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro3.aln usr/share/doc/python-biopython-doc/Tests/codonalign/pro4.aln usr/share/doc/python-biopython-doc/Tests/common_BioSQL.py usr/share/doc/python-biopython-doc/Tests/common_BioSQL_online.py usr/share/doc/python-biopython-doc/Tests/motifs/abdb.xms usr/share/doc/python-biopython-doc/Tests/motifs/alignace.out usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.txt usr/share/doc/python-biopython-doc/Tests/motifs/mast.crp0.de.oops.txt.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.INO_up800.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.adh.classic.oops.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.farntrans5.classic.anr.xml usr/share/doc/python-biopython-doc/Tests/motifs/meme.out usr/share/doc/python-biopython-doc/Tests/motifs/meme.psp_test.classic.zoops.xml usr/share/doc/python-biopython-doc/Tests/msf/DOA_prot.msf usr/share/doc/python-biopython-doc/Tests/pairwise2_testCases.py usr/share/doc/python-biopython-doc/Tests/phenotype/BadPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/Plates.csv usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlate_2.json usr/share/doc/python-biopython-doc/Tests/phenotype/SmallPlates.csv usr/share/doc/python-biopython-doc/Tests/run_tests.py usr/share/doc/python-biopython-doc/Tests/search_tests_common.py usr/share/doc/python-biopython-doc/Tests/seq_tests_common.py usr/share/doc/python-biopython-doc/Tests/test_Ace.py usr/share/doc/python-biopython-doc/Tests/test_Affy.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_ClustalIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_MauveIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignIO_PhylipIO.py usr/share/doc/python-biopython-doc/Tests/test_AlignInfo.py usr/share/doc/python-biopython-doc/Tests/test_Align_Alignment.py usr/share/doc/python-biopython-doc/Tests/test_Align_a2m.py gzip -9nf usr/share/doc/python-biopython-doc/Tests/test_Align_bed.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigbed.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigmaf.py usr/share/doc/python-biopython-doc/Tests/test_Align_bigpsl.py usr/share/doc/python-biopython-doc/Tests/test_Align_chain.py usr/share/doc/python-biopython-doc/Tests/test_Align_clustal.py usr/share/doc/python-biopython-doc/Tests/test_Align_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_Align_emboss.py usr/share/doc/python-biopython-doc/Tests/test_Align_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_Align_fasta.py usr/share/doc/python-biopython-doc/Tests/test_Align_hhr.py usr/share/doc/python-biopython-doc/Tests/test_Align_maf.py usr/share/doc/python-biopython-doc/Tests/test_Align_mauve.py usr/share/doc/python-biopython-doc/Tests/test_Align_msf.py usr/share/doc/python-biopython-doc/Tests/test_Align_nexus.py usr/share/doc/python-biopython-doc/Tests/test_Align_phylip.py usr/share/doc/python-biopython-doc/Tests/test_Align_psl.py usr/share/doc/python-biopython-doc/Tests/test_Align_sam.py usr/share/doc/python-biopython-doc/Tests/test_Align_stockholm.py usr/share/doc/python-biopython-doc/Tests/test_Align_tabular.py usr/share/doc/python-biopython-doc/Tests/test_Application.py usr/share/doc/python-biopython-doc/Tests/test_BWA_tool.py usr/share/doc/python-biopython-doc/Tests/test_CAPS.py usr/share/doc/python-biopython-doc/Tests/test_ClustalOmega_tool.py usr/share/doc/python-biopython-doc/Tests/test_Clustalw_tool.py usr/share/doc/python-biopython-doc/Tests/test_Cluster.py usr/share/doc/python-biopython-doc/Tests/test_CodonTable.py usr/share/doc/python-biopython-doc/Tests/test_ColorSpiral.py usr/share/doc/python-biopython-doc/Tests/test_Consensus.py usr/share/doc/python-biopython-doc/Tests/test_Dialign_tool.py usr/share/doc/python-biopython-doc/Tests/test_Emboss.py usr/share/doc/python-biopython-doc/Tests/test_EmbossPrimer.py usr/share/doc/python-biopython-doc/Tests/test_Entrez.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_online.py usr/share/doc/python-biopython-doc/Tests/test_Entrez_parser.py usr/share/doc/python-biopython-doc/Tests/test_Enzyme.py usr/share/doc/python-biopython-doc/Tests/test_Fasttree_tool.py usr/share/doc/python-biopython-doc/Tests/test_File.py usr/share/doc/python-biopython-doc/Tests/test_GenBank.py usr/share/doc/python-biopython-doc/Tests/test_GenomeDiagram.py usr/share/doc/python-biopython-doc/Tests/test_GraphicsChromosome.py usr/share/doc/python-biopython-doc/Tests/test_HMMCasino.py usr/share/doc/python-biopython-doc/Tests/test_HMMGeneral.py usr/share/doc/python-biopython-doc/Tests/test_KEGG.py usr/share/doc/python-biopython-doc/Tests/test_KEGG_online.py usr/share/doc/python-biopython-doc/Tests/test_KGML_graphics.py usr/share/doc/python-biopython-doc/Tests/test_KGML_nographics.py usr/share/doc/python-biopython-doc/Tests/test_KeyWList.py usr/share/doc/python-biopython-doc/Tests/test_LogisticRegression.py usr/share/doc/python-biopython-doc/Tests/test_MafIO_index.py usr/share/doc/python-biopython-doc/Tests/test_Mafft_tool.py usr/share/doc/python-biopython-doc/Tests/test_MarkovModel.py usr/share/doc/python-biopython-doc/Tests/test_Medline.py usr/share/doc/python-biopython-doc/Tests/test_Muscle_tool.py usr/share/doc/python-biopython-doc/Tests/test_NCBIXML.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_BLAST_tools.py usr/share/doc/python-biopython-doc/Tests/test_NCBI_qblast.py usr/share/doc/python-biopython-doc/Tests/test_NMR.py usr/share/doc/python-biopython-doc/Tests/test_NaiveBayes.py usr/share/doc/python-biopython-doc/Tests/test_Nexus.py usr/share/doc/python-biopython-doc/Tests/test_PAML_baseml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_codeml.py usr/share/doc/python-biopython-doc/Tests/test_PAML_yn00.py usr/share/doc/python-biopython-doc/Tests/test_PDBList.py usr/share/doc/python-biopython-doc/Tests/test_PDB_DSSP.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Disordered.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Exposure.py usr/share/doc/python-biopython-doc/Tests/test_PDB_KDTree.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIF2Dict.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_MMCIFParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBIO.py usr/share/doc/python-biopython-doc/Tests/test_PDB_PDBParser.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Polypeptide.py usr/share/doc/python-biopython-doc/Tests/test_PDB_QCPSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SASA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_SMCRA.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Selection.py usr/share/doc/python-biopython-doc/Tests/test_PDB_Superimposer.py usr/share/doc/python-biopython-doc/Tests/test_PDB_internal_coords.py usr/share/doc/python-biopython-doc/Tests/test_PDB_parse_pdb_header.py usr/share/doc/python-biopython-doc/Tests/test_PDB_vectors.py usr/share/doc/python-biopython-doc/Tests/test_PQR.py usr/share/doc/python-biopython-doc/Tests/test_Pathway.py usr/share/doc/python-biopython-doc/Tests/test_Phd.py usr/share/doc/python-biopython-doc/Tests/test_Phylo.py usr/share/doc/python-biopython-doc/Tests/test_PhyloXML.py usr/share/doc/python-biopython-doc/Tests/test_PopGen_GenePop_nodepend.py usr/share/doc/python-biopython-doc/Tests/test_Prank_tool.py usr/share/doc/python-biopython-doc/Tests/test_ProtParam.py usr/share/doc/python-biopython-doc/Tests/test_Restriction.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Raf.py usr/share/doc/python-biopython-doc/Tests/test_SCOP_Scop.py usr/share/doc/python-biopython-doc/Tests/test_SVDSuperimposer.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_model.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqFeature.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_AbiIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_FastaIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Insdc.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_PdbIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_QualityIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SeqXML.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_SnapGene.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_TwoBitIO.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_Xdna.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_features.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_index.py usr/share/doc/python-biopython-doc/Tests/test_SeqIO_write.py usr/share/doc/python-biopython-doc/Tests/test_SeqRecord.py usr/share/doc/python-biopython-doc/Tests/test_SeqUtils.py usr/share/doc/python-biopython-doc/Tests/test_Seq_objs.py usr/share/doc/python-biopython-doc/Tests/test_SffIO.py usr/share/doc/python-biopython-doc/Tests/test_SwissProt.py usr/share/doc/python-biopython-doc/Tests/test_TCoffee_tool.py usr/share/doc/python-biopython-doc/Tests/test_TogoWS.py usr/share/doc/python-biopython-doc/Tests/test_TreeConstruction.py usr/share/doc/python-biopython-doc/Tests/test_UniGene.py usr/share/doc/python-biopython-doc/Tests/test_UniProt_GOA.py usr/share/doc/python-biopython-doc/Tests/test_Uniprot.py usr/share/doc/python-biopython-doc/Tests/test_align.py usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_alignment_map.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_GraphicsBitmaps.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_Tutorial.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/build/reproducible-path/python-biopython-1.83+dfsg1' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_fixperms find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/reproducible-path/python-biopython-1.83+dfsg1' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug chmod 0644 -- debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/7bb827b3b828bf2b8877580a04bc215e41ae26.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/7bb827b3b828bf2b8877580a04bc215e41ae26.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/7bb827b3b828bf2b8877580a04bc215e41ae26.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/0122e93c8c1950d674cf3fdee34aa79bc47f66.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/0122e93c8c1950d674cf3fdee34aa79bc47f66.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d9/0122e93c8c1950d674cf3fdee34aa79bc47f66.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/32 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/32/69851cc979217bc40bd9765d9c193013173631.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/32/69851cc979217bc40bd9765d9c193013173631.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/32/69851cc979217bc40bd9765d9c193013173631.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/08 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/08/7bc05557535b5852a17f8be27f39f2bd3b5ed3.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/08/7bc05557535b5852a17f8be27f39f2bd3b5ed3.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/08/7bc05557535b5852a17f8be27f39f2bd3b5ed3.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/3a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/3a/4a359c6a0f4d77a8d7ed6656a1c58a7ba6b1d5.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/3a/4a359c6a0f4d77a8d7ed6656a1c58a7ba6b1d5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/3a/4a359c6a0f4d77a8d7ed6656a1c58a7ba6b1d5.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/64 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/64/03f79f86548313bf9b3f49e4d1bc31cc9f2716.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/64/03f79f86548313bf9b3f49e4d1bc31cc9f2716.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/64/03f79f86548313bf9b3f49e4d1bc31cc9f2716.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0e/8e23b01b442f3d77ea7cab4ed409d9aa49d72d.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0e/8e23b01b442f3d77ea7cab4ed409d9aa49d72d.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/0e/8e23b01b442f3d77ea7cab4ed409d9aa49d72d.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/87270410fc974c5f37fcc1846ba0c26d27b91b.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/87270410fc974c5f37fcc1846ba0c26d27b91b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/eb/87270410fc974c5f37fcc1846ba0c26d27b91b.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/7d5114abbdfd5983986eadb46b45e842ac16d4.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/7d5114abbdfd5983986eadb46b45e842ac16d4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/56/7d5114abbdfd5983986eadb46b45e842ac16d4.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23/164fbb41881800f3e213622011fd373e8150f4.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23/164fbb41881800f3e213622011fd373e8150f4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/23/164fbb41881800f3e213622011fd373e8150f4.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/a2f5f54ec6e014e5687578c9a1fb8e34bb3d77.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/a2f5f54ec6e014e5687578c9a1fb8e34bb3d77.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/b3/a2f5f54ec6e014e5687578c9a1fb8e34bb3d77.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/89c857c74d1d5ab9b5fd18086959dec7f82305.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/89c857c74d1d5ab9b5fd18086959dec7f82305.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/84/89c857c74d1d5ab9b5fd18086959dec7f82305.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/26 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/26/d7995000cf6c2e2484dfc9edf121c02fcde125.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/26/d7995000cf6c2e2484dfc9edf121c02fcde125.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/26/d7995000cf6c2e2484dfc9edf121c02fcde125.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/4f987927fc29229f8acfcfa3b4a14ba5885f1b.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/4f987927fc29229f8acfcfa3b4a14ba5885f1b.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/5a/4f987927fc29229f8acfcfa3b4a14ba5885f1b.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/14 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/14/dad198baa36c6720a2fdb4331eef8b2c88f7eb.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/14/dad198baa36c6720a2fdb4331eef8b2c88f7eb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/14/dad198baa36c6720a2fdb4331eef8b2c88f7eb.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/09/c092fccea3f62d80a7336a37acde146d66acaf.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/09/c092fccea3f62d80a7336a37acde146d66acaf.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/09/c092fccea3f62d80a7336a37acde146d66acaf.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/19d8120ddcb6193ae21559dcf2a8204de2822f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/19d8120ddcb6193ae21559dcf2a8204de2822f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/f2/19d8120ddcb6193ae21559dcf2a8204de2822f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/88ccf803a2fe09f4b4cfc4592844bb077db574.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/88ccf803a2fe09f4b4cfc4592844bb077db574.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/42/88ccf803a2fe09f4b4cfc4592844bb077db574.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym install -m0755 -d debian/.debhelper/python3-biopython dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_pairwisealigner.cpython-312-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-311-aarch64-linux-gnu.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_codonaligner.cpython-312-aarch64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm install -m0755 -d debian/python-biopython-doc/DEBIAN install -m0755 -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython-sql/DEBIAN echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -cdebian/control -Pdebian/python3-biopython-sql install -m0755 -d debian/python-biopython-doc/DEBIAN echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -cdebian/control -Pdebian/python-biopython-doc install -m0755 -d debian/python3-biopython/DEBIAN echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -cdebian/control -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=087bc05557535b5852a17f8be27f39f2bd3b5ed3 09c092fccea3f62d80a7336a37acde146d66acaf 0e8e23b01b442f3d77ea7cab4ed409d9aa49d72d 14dad198baa36c6720a2fdb4331eef8b2c88f7eb 23164fbb41881800f3e213622011fd373e8150f4 26d7995000cf6c2e2484dfc9edf121c02fcde125 3269851cc979217bc40bd9765d9c193013173631 3a4a359c6a0f4d77a8d7ed6656a1c58a7ba6b1d5 4288ccf803a2fe09f4b4cfc4592844bb077db574 567d5114abbdfd5983986eadb46b45e842ac16d4 5a4f987927fc29229f8acfcfa3b4a14ba5885f1b 6403f79f86548313bf9b3f49e4d1bc31cc9f2716 8489c857c74d1d5ab9b5fd18086959dec7f82305 887bb827b3b828bf2b8877580a04bc215e41ae26 b3a2f5f54ec6e014e5687578c9a1fb8e34bb3d77 d90122e93c8c1950d674cf3fdee34aa79bc47f66 eb87270410fc974c5f37fcc1846ba0c26d27b91b f219d8120ddcb6193ae21559dcf2a8204de2822f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -cdebian/control -Pdebian/python3-biopython dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined chmod 0644 -- debian/python-biopython-doc/DEBIAN/control chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython-sql/DEBIAN install -m0755 -d debian/python3-biopython/DEBIAN install -m0755 -d debian/python-biopython-doc/DEBIAN cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.83+dfsg1-2_all.deb'. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.83+dfsg1-2_all.deb'. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.83+dfsg1-2_arm64.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.83+dfsg1-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-biopython_1.83+dfsg1-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-biopython_1.83+dfsg1-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1310250/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1310250 and its subdirectories I: Current time: Sat Jun 14 00:35:56 +14 2025 I: pbuilder-time-stamp: 1749810956