I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 31 09:55:29 +14 2024 I: pbuilder-time-stamp: 1711828529 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lammps_20240207+dfsg-1.1.dsc] I: copying [./lammps_20240207+dfsg.orig.tar.xz] I: copying [./lammps_20240207+dfsg-1.1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 28 17:24:24 2024 gpgv: using RSA key E3DE869822F99B6CBC35F279BF7DB622B303AC8B gpgv: issuer "slyon@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1.dsc: no acceptable signature found dpkg-source: info: extracting lammps in lammps-20240207+dfsg dpkg-source: info: unpacking lammps_20240207+dfsg.orig.tar.xz dpkg-source: info: unpacking lammps_20240207+dfsg-1.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_set_potentials_path.patch dpkg-source: info: applying 30_build_docs.patch dpkg-source: info: applying do-not-install-potentials.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25750/tmp/hooks/D01_modify_environment starting debug: Running on virt64z. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 30 19:55 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/25750/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/25750/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=9c517ca9c40f43f5bc37b32e9bdbdef5 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=25750 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4z48f4i2/pbuilderrc_Xy4u --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4z48f4i2/b2 --logfile b2/build.log lammps_20240207+dfsg-1.1.dsc' SUDO_GID=110 SUDO_UID=103 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 25 16:02 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25750/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, gfortran | fortran-compiler, libavcodec-dev, libeigen3-dev, libfftw3-dev, libhdf5-mpi-dev, libjpeg-dev, libkim-api-dev, libnetcdf-dev, libsymspg-dev, libvtk9-dev, libvtk9-qt-dev, mpi-default-bin, mpi-default-dev, ocl-icd-opencl-dev | opencl-dev, python3-all-dev, python3-sphinx, voro++-dev, libjs-sphinxdoc, libjs-jquery, libjs-mathjax, libjs-underscore, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, tex-gyre, doxygen, sphinx-rtd-theme-common, latexmk, htmldoc, python3-sphinx-tabs, python3-sphinxcontrib.jquery, python3-sphinxcontrib.spelling, python3-breathe, python3-venv, git dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19467 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on gfortran | fortran-compiler; however: Package gfortran is not installed. Package fortran-compiler is not installed. pbuilder-satisfydepends-dummy depends on libavcodec-dev; however: Package libavcodec-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-mpi-dev; however: Package libhdf5-mpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libkim-api-dev; however: Package libkim-api-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libsymspg-dev; however: Package libsymspg-dev is not installed. pbuilder-satisfydepends-dummy depends on libvtk9-dev; however: Package libvtk9-dev is not installed. pbuilder-satisfydepends-dummy depends on libvtk9-qt-dev; however: Package libvtk9-qt-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-bin; however: Package mpi-default-bin is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on ocl-icd-opencl-dev | opencl-dev; however: Package ocl-icd-opencl-dev is not installed. Package opencl-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on voro++-dev; however: Package voro++-dev is not installed. pbuilder-satisfydepends-dummy depends on libjs-sphinxdoc; however: Package libjs-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on libjs-underscore; however: Package libjs-underscore is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on tex-gyre; however: Package tex-gyre is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on sphinx-rtd-theme-common; however: Package sphinx-rtd-theme-common is not installed. pbuilder-satisfydepends-dummy depends on latexmk; however: Package latexmk is not installed. pbuilder-satisfydepends-dummy depends on htmldoc; however: Package htmldoc is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-tabs; however: Package python3-sphinx-tabs is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.jquery; however: Package python3-sphinxcontrib.jquery is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinxcontrib.spelling; however: Package python3-sphinxcontrib.spelling is not installed. pbuilder-satisfydepends-dummy depends on python3-breathe; however: Package python3-breathe is not installed. pbuilder-satisfydepends-dummy depends on python3-venv; however: Package python3-venv is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cmake{a} cmake-data{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} default-libmysqlclient-dev{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dictionaries-common{a} docutils-common{a} doxygen{a} dwz{a} emacsen-common{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-lato{a} fonts-lmodern{a} fonts-mathjax{a} gdal-data{a} gdal-plugins{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} git{a} git-man{a} graphviz{a} groff-base{a} gtk-update-icon-cache{a} hdf5-helpers{a} hicolor-icon-theme{a} htmldoc{a} htmldoc-common{a} hunspell-en-us{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} iso-codes{a} java-common{a} latexmk{a} libabsl20220623{a} libaec-dev{a} libaec0{a} libaom-dev{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libarmadillo-dev{a} libarmadillo12{a} libarpack2-dev{a} libarpack2t64{a} libasound2-data{a} libasound2t64{a} libaspell15{a} libatk1.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavcodec-dev{a} libavcodec60{a} libavformat-dev{a} libavformat60{a} libavif16{a} libavutil-dev{a} libavutil58{a} libblas-dev{a} libblas3{a} libblosc-dev{a} libblosc1{a} libbluray2{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo2{a} libcap2-bin{a} libcbor0.10{a} libcdt5{a} libcfitsio-dev{a} libcfitsio10t64{a} libcgraph6{a} libchromaprint1{a} libcjson1{a} libclang-cpp16t64{a} libclang1-15t64{a} libclang1-16t64{a} libcodec2-1.2{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdatrie1{a} libdav1d-dev{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libde265-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion-dev{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdw1t64{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libenchant-2-2{a} liberror-perl{a} libevdev2{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfltk-images1.3t64{a} libfltk1.3t64{a} libfmt9{a} libfontbox-java{a} libfontconfig-dev{a} libfontconfig1{a} libfontconfig1-dev{a} libfontenc1{a} libfreetype-dev{a} libfreetype6{a} libfreexl-dev{a} libfreexl1{a} libfribidi0{a} libfyba-dev{a} libfyba0t64{a} libgav1-1{a} libgbm1{a} libgd3{a} libgdal-dev{a} libgdal34t64{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeos-c1t64{a} libgeos-dev{a} libgeos3.12.1t64{a} libgeotiff-dev{a} libgeotiff5{a} libgfortran-13-dev{a} libgfortran5{a} libgif-dev{a} libgif7{a} libgl-dev{a} libgl1{a} libgl1-mesa-dev{a} libgl1-mesa-dri{a} libgl2ps-dev{a} libgl2ps1.4{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglew-dev{a} libglew2.2{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd-core-dev{a} libglvnd-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgme0{a} libgraphite2-3{a} libgsm1{a} libgssapi-krb5-2{a} libgstreamer-plugins-base1.0-0{a} libgstreamer1.0-0{a} libgtk2.0-0t64{a} libgtk2.0-common{a} libgts-0.7-5t64{a} libgudev-1.0-0{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf4-0-alt{a} libhdf4-alt-dev{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1t64{a} libhdf5-openmpi-cpp-103-1t64{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102t64{a} libhdf5-openmpi-hl-100t64{a} libhdf5-openmpi-hl-cpp-100t64{a} libhdf5-openmpi-hl-fortran-100t64{a} libheif-dev{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhunspell-1.7-0{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhwy1t64{a} libhyphen0{a} libibverbs-dev{a} libibverbs1{a} libice-dev{a} libice6{a} libicu-dev{a} libicu72{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} libjsoncpp-dev{a} libjsoncpp25{a} libjxl0.7{a} libk5crypto3{a} libkeyutils1{a} libkim-api-dev{a} libkim-api2{a} libkml-dev{a} libkmlbase1t64{a} libkmlconvenience1t64{a} libkmldom1t64{a} libkmlengine1t64{a} libkmlregionator1t64{a} libkmlxsd1t64{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm15t64{a} libllvm16t64{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmariadb-dev{a} libmariadb-dev-compat{a} libmariadb3{a} libmbedcrypto7t64{a} libmd4c0{a} libminizip-dev{a} libminizip1t64{a} libmp3lame0{a} libmpg123-0{a} libmtdev1t64{a} libmunge2{a} libnetcdf-dev{a} libnetcdf19t64{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnorm1t64{a} libnspr4{a} libnss3{a} libnuma-dev{a} libnuma1{a} libodbc2{a} libodbccr2{a} libodbcinst2{a} libogdi-dev{a} libogdi4.1{a} libogg-dev{a} libogg0{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenjp2-7-dev{a} libopenmpi-dev{a} libopenmpi3t64{a} libopenmpt0t64{a} libopus0{a} liborc-0.4-0t64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpdfbox-java{a} libpgm-5.3-0t64{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libpoppler-dev{a} libpoppler-private-dev{a} libpoppler126t64{a} libpotrace0{a} libpq-dev{a} libpq5{a} libproc2-0{a} libproj-dev{a} libproj25{a} libpsl5t64{a} libptexenc1{a} libpthread-stubs0-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-dev{a} libqhull-r8.0{a} libqhull8.0{a} libqhullcpp8.0{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5designercomponents5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5positioning5{a} libqt5printsupport5t64{a} libqt5qml5{a} libqt5qmlmodels5{a} libqt5qmlworkerscript5{a} libqt5quick5{a} libqt5quickparticles5{a} libqt5quickshapes5{a} libqt5quicktest5{a} libqt5quickwidgets5{a} libqt5sensors5{a} libqt5sql5-sqlite{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5webchannel5{a} libqt5webkit5{a} libqt5webkit5-dev{a} libqt5widgets5t64{a} libqt5xml5t64{a} librabbitmq4{a} librav1e0{a} librdmacm1t64{a} libreadline8t64{a} librhash0{a} librist4{a} librsvg2-2{a} librtmp1{a} librttopo-dev{a} librttopo1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libshine3{a} libsm-dev{a} libsm6{a} libsnappy1v5{a} libsodium23{a} libsoxr0{a} libspatialite-dev{a} libspatialite8t64{a} libspeex1{a} libsqlite3-dev{a} libsrt1.5-gnutls{a} libssh-gcrypt-4{a} libssh2-1t64{a} libssl-dev{a} libsub-override-perl{a} libsuperlu-dev{a} libsuperlu6{a} libsvtav1enc1d1{a} libswresample-dev{a} libswresample4{a} libswscale-dev{a} libswscale7{a} libsymspg-dev{a} libsymspg2{a} libsynctex2{a} libsz2{a} libtbb-dev{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtext-iconv-perl{a} libthai-data{a} libthai0{a} libtheora-dev{a} libtheora0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtwolame0{a} libuchardet0{a} libudfread0{a} libunwind8{a} liburiparser-dev{a} liburiparser1{a} libutfcpp-dev{a} libuv1t64{a} libva-drm2{a} libva-x11-2{a} libva2{a} libvdpau1{a} libvorbis0a{a} libvorbisenc2{a} libvorbisfile3{a} libvoro++1{a} libvpx8{a} libvtk9-dev{a} libvtk9-java{a} libvtk9-qt-dev{a} libvtk9.1t64{a} libvtk9.1t64-qt{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libx264-164{a} libx265-199{a} libx265-dev{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxnvctrl0{a} libxpm4{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss-dev{a} libxss1{a} libxt-dev{a} libxt6t64{a} libxtst6{a} libxvidcore4{a} libxxf86vm1{a} libyuv0{a} libz3-4{a} libzmq5{a} libzstd-dev{a} libzvbi-common{a} libzvbi0t64{a} libzzip-0-13t64{a} m4{a} man-db{a} mariadb-common{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} mysql-common{a} netbase{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} preview-latex-style{a} procps{a} proj-data{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-breathe{a} python3-build{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-enchant{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-installer{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-packaging{a} python3-pip-whl{a} python3-pkg-resources{a} python3-pygments{a} python3-pyproject-hooks{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-setuptools-whl{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-tabs{a} python3-sphinxcontrib.jquery{a} python3-sphinxcontrib.spelling{a} python3-toml{a} python3-tz{a} python3-urllib3{a} python3-venv{a} python3-vtk9{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.11-venv{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} qdoc-qt5{a} qhelpgenerator-qt5{a} qt5-assistant{a} qt5-qmake{a} qt5-qmake-bin{a} qt5-qmltooling-plugins{a} qtattributionsscanner-qt5{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} qtdeclarative5-dev{a} qtdeclarative5-dev-tools{a} qttools5-dev{a} qttools5-dev-tools{a} qttools5-private-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} sphinx-rtd-theme-common{a} t1utils{a} tcl{a} tcl-dev{a} tcl8.6{a} tcl8.6-dev{a} tex-common{a} tex-gyre{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tk{a} tk-dev{a} tk8.6{a} tk8.6-dev{a} tzdata{a} ucf{a} unixodbc-common{a} unixodbc-dev{a} uuid-dev{a} voro++-dev{a} vtk9{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf apvlv aspell-am aspell-ar aspell-ar-large aspell-bg aspell-br aspell-ca aspell-cs aspell-cy aspell-da aspell-de aspell-de-1901 aspell-el aspell-en aspell-eo aspell-eo-cx7 aspell-es aspell-et aspell-eu aspell-fa aspell-fo aspell-fr aspell-ga aspell-gl-minimos aspell-he aspell-hr aspell-hsb aspell-hu aspell-hy aspell-is aspell-it aspell-kk aspell-ku aspell-lt aspell-lv aspell-nl aspell-no aspell-pl aspell-pt-br aspell-pt-pt aspell-ro aspell-ru aspell-sk aspell-sl aspell-sv aspell-tl aspell-uk aspell-uz atril bzip2-doc curl dbus dvisvgm enchant-2 evince fonts-dejavu-extra fonts-liberation2 fonts-texgyre fonts-texgyre-math geoclue-2.0 ghostscript gstreamer1.0-plugins-base gv javascript-common krb5-locales less libaacs0 libarchive-cpio-perl libatk-wrapper-java-jni libcfitsio-doc libcoarrays-openmpi-dev libcups2 libfile-mimeinfo-perl libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgtk2.0-bin libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libjson-xs-perl libldap-common libmail-sendmail-perl libnet-dbus-perl libpam-cap libpng-tools libqt5svg5 librsvg2-common libsasl2-modules libspreadsheet-parseexcel-perl libssl3 libvdpau-va-gl1 libx11-protocol-perl lmodern lynx mesa-va-drivers mesa-vdpau-drivers mesa-vulkan-drivers mupdf okular poppler-data proj-bin psmisc publicsuffix python3-pil qpdfview qpdfview-ps-plugin qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 ruby texlive-plain-generic tipa va-driver-all vdpau-driver-all viewpdf.app wget x11-utils x11-xserver-utils xauth xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps 0 packages upgraded, 723 newly installed, 0 to remove and 0 not upgraded. Need to get 638 MB of archives. After unpacking 2467 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libglvnd0 armhf 1.7.0-1 [52.3 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libdrm-common all 2.4.120-2 [7688 B] Get: 4 http://deb.debian.org/debian unstable/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libwayland-server0 armhf 1.22.0-2.1+b1 [26.7 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libgbm1 armhf 24.0.4-1 [37.3 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libglapi-mesa armhf 24.0.4-1 [43.4 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libwayland-client0 armhf 1.22.0-2.1+b1 [20.4 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libx11-xcb1 armhf 2:1.8.7-1 [231 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 24 http://deb.debian.org/debian unstable/main armhf libegl-mesa0 armhf 24.0.4-1 [98.6 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libegl1 armhf 1.7.0-1 [28.7 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libgles2 armhf 1.7.0-1 [17.4 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.78.4-6 [1053 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1 [183 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libdw1t64 armhf 0.191-1 [227 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libunwind8 armhf 1.6.2-3 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libcap2-bin armhf 1:2.66-5 [33.0 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libgstreamer1.0-0 armhf 1.24.1-1 [1269 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf liborc-0.4-0t64 armhf 1:0.4.38-1 [161 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf iso-codes all 4.16.0-1 [2936 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libgstreamer-plugins-base1.0-0 armhf 1.24.1-1 [887 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libhyphen0 armhf 2.8.8-7+b1 [28.5 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-2+b2 [143 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf shared-mime-info armhf 2.4-3 [580 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libdouble-conversion3 armhf 3.3.0-1+b1 [38.5 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libpcre2-16-0 armhf 10.42-4+b1 [212 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libqt5core5t64 armhf 5.15.10+dfsg-7.2 [1577 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b2 [372 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23 [252 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libevdev2 armhf 1.13.1+dfsg-1 [25.9 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libmtdev1t64 armhf 1.1.6-1.1 [21.0 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libgudev-1.0-0 armhf 238-5 [12.6 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libwacom-common all 2.10.0-1 [62.4 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libwacom9 armhf 2.10.0-1+b1 [19.8 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libinput-bin armhf 1.25.0-1+b1 [23.1 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libinput10 armhf 1.25.0-1+b1 [110 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libmd4c0 armhf 0.4.8-1+b1 [40.0 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libqt5dbus5t64 armhf 5.15.10+dfsg-7.2 [190 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.0-2.4 [19.5 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 70 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libqt5network5t64 armhf 5.15.10+dfsg-7.2 [598 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libxcb-icccm4 armhf 0.4.1-1.1+b1 [25.7 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libxcb-util1 armhf 0.4.0-1+b1 [22.2 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libxcb-image0 armhf 0.4.0-2+b1 [21.1 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libxcb-shape0 armhf 1.15-1 [106 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libxcb-xinerama0 armhf 1.15-1 [105 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libxcb-xinput0 armhf 1.15-1 [127 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libxcb-xkb1 armhf 1.15-1 [127 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf xkb-data all 2.41-2 [795 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libxkbcommon0 armhf 1.6.0-1 [96.3 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libxkbcommon-x11-0 armhf 1.6.0-1 [14.1 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libqt5gui5t64 armhf 5.15.10+dfsg-7.2 [2650 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libqt5positioning5 armhf 5.15.10+dfsg-3+b2 [178 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libcups2t64 armhf 2.4.7-1.2 [213 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libqt5widgets5t64 armhf 5.15.10+dfsg-7.2 [2106 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libqt5printsupport5t64 armhf 5.15.10+dfsg-7.2 [187 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libqt5qml5 armhf 5.15.10+dfsg-2+b2 [1199 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libqt5qmlmodels5 armhf 5.15.10+dfsg-2+b2 [165 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libqt5quick5 armhf 5.15.10+dfsg-2+b2 [1378 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libqt5sensors5 armhf 5.15.10-2+b2 [96.2 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libqt5webchannel5 armhf 5.15.10-2+b2 [50.4 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.3.2-0.4+b1 [106 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.3.2-0.4+b1 [262 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libwoff1 armhf 1.0.2-2+b1 [36.4 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libqt5webkit5 armhf 5.212.0~alpha4-33+b3 [9376 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libvulkan1 armhf 1.3.275.0-1 [109 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libllvm17t64 armhf 1:17.0.6-9 [21.6 MB] Get: 118 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dri armhf 24.0.4-1 [6473 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libglx-mesa0 armhf 24.0.4-1 [130 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libglx0 armhf 1.7.0-1 [32.2 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libgl1 armhf 1.7.0-1 [90.8 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf x11proto-dev all 2023.2-1 [598 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 130 http://deb.debian.org/debian unstable/main armhf libxcb1-dev armhf 1.15-1 [179 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libx11-dev armhf 2:1.8.7-1 [816 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libglx-dev armhf 1.7.0-1 [15.5 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf libgl-dev armhf 1.7.0-1 [100 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libegl-dev armhf 1.7.0-1 [19.2 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf libgles1 armhf 1.7.0-1 [12.0 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf libgles-dev armhf 1.7.0-1 [50.5 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf libqt5concurrent5t64 armhf 5.15.10+dfsg-7.2 [42.2 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libqt5sql5t64 armhf 5.15.10+dfsg-7.2 [110 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libqt5test5t64 armhf 5.15.10+dfsg-7.2 [133 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libqt5xml5t64 armhf 5.15.10+dfsg-7.2 [110 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.8-3+b3 [804 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.8-3+b3 [1600 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-1 [255 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.8-3+b3 [1703 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.8-3+b3 [597 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 152 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf libvulkan-dev armhf 1.3.275.0-1 [1310 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libxext-dev armhf 2:1.3.4-1+b1 [103 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf qt5-qmake-bin armhf 5.15.10+dfsg-7.2 [902 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf qtchooser armhf 66-2 [23.6 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf qt5-qmake armhf 5.15.10+dfsg-7.2 [222 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf qtbase5-dev-tools armhf 5.15.10+dfsg-7.2 [651 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf qtbase5-dev armhf 5.15.10+dfsg-7.2 [1068 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf libqt5qmlworkerscript5 armhf 5.15.10+dfsg-2+b2 [33.1 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf libqt5quickparticles5 armhf 5.15.10+dfsg-2+b2 [185 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf libqt5quickshapes5 armhf 5.15.10+dfsg-2+b2 [85.6 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf libqt5quicktest5 armhf 5.15.10+dfsg-2+b2 [52.2 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf libqt5quickwidgets5 armhf 5.15.10+dfsg-2+b2 [36.6 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf qt5-qmltooling-plugins armhf 5.15.10+dfsg-2+b2 [155 kB] Get: 166 http://deb.debian.org/debian unstable/main armhf qtdeclarative5-dev-tools armhf 5.15.10+dfsg-2+b2 [520 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf qtdeclarative5-dev armhf 5.15.10+dfsg-2+b2 [426 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libqt5webkit5-dev armhf 5.212.0~alpha4-33+b3 [55.3 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.2-4+b2 [794 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.2-4+b2 [1739 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf sgml-base all 1.31 [15.4 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.1.5-1.1 [1208 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 179 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.39.3-11 [82.5 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.0-4 [1373 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf libcbor0.10 armhf 0.10.2-1.2 [24.3 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf libfido2-1 armhf 1.14.0-1+b1 [70.5 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf openssh-client armhf 1:9.7p1-2+b2 [870 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 194 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-3+b2 [124 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf gtk-update-icon-cache armhf 3.24.41-4 [45.6 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 198 http://deb.debian.org/debian unstable/main armhf adwaita-icon-theme all 46.0-1 [614 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf at-spi2-common all 2.52.0-1 [166 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 201 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 202 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 203 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 204 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 205 http://deb.debian.org/debian unstable/main armhf ca-certificates-java all 20240118 [11.6 kB] Get: 206 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.2-1.1 [304 kB] Get: 207 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.60.0-1 [62.8 kB] Get: 208 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 209 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b3 [53.2 kB] Get: 210 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-4.1+b1 [198 kB] Get: 211 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.7.1-1 [390 kB] Get: 212 http://deb.debian.org/debian unstable/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 213 http://deb.debian.org/debian unstable/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 214 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 215 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.28.3-1 [2128 kB] Get: 216 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.28.3-1+b2 [5115 kB] Get: 217 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 218 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 219 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 220 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 221 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 222 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 223 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 224 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b1 [106 kB] Get: 225 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 226 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 227 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 228 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 229 http://deb.debian.org/debian unstable/main armhf java-common all 0.75 [6640 B] Get: 230 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 231 http://deb.debian.org/debian unstable/main armhf libnspr4 armhf 2:4.35-1.1+b1 [87.2 kB] Get: 232 http://deb.debian.org/debian unstable/main armhf libnss3 armhf 2:3.99-1 [1220 kB] Get: 233 http://deb.debian.org/debian unstable/main armhf libpcsclite1 armhf 2.0.3-1 [47.7 kB] Get: 234 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre-headless armhf 17.0.11~7ea-1 [38.2 MB] Get: 235 http://deb.debian.org/debian unstable/main armhf default-jre-headless armhf 2:1.17-75 [3068 B] Get: 236 http://deb.debian.org/debian unstable/main armhf libgtk2.0-common all 2.24.33-4 [2661 kB] Get: 237 http://deb.debian.org/debian unstable/main armhf libatk1.0-0t64 armhf 2.52.0-1 [44.0 kB] Get: 238 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 239 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.0-3 [441 kB] Get: 240 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 241 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 242 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 243 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 244 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.52.1+ds-1 [192 kB] Get: 245 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.52.1+ds-1 [41.8 kB] Get: 246 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.52.1+ds-1 [31.2 kB] Get: 247 http://deb.debian.org/debian unstable/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.1 kB] Get: 248 http://deb.debian.org/debian unstable/main armhf libxcursor1 armhf 1:1.2.1-1 [37.9 kB] Get: 249 http://deb.debian.org/debian unstable/main armhf libxdamage1 armhf 1:1.1.6-1 [14.6 kB] Get: 250 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 251 http://deb.debian.org/debian unstable/main armhf libxinerama1 armhf 2:1.1.4-3 [17.4 kB] Get: 252 http://deb.debian.org/debian unstable/main armhf libxrandr2 armhf 2:1.5.4-1 [33.0 kB] Get: 253 http://deb.debian.org/debian unstable/main armhf libgtk2.0-0t64 armhf 2.24.33-4 [1556 kB] Get: 254 http://deb.debian.org/debian unstable/main armhf libasound2-data all 1.2.11-1 [20.9 kB] Get: 255 http://deb.debian.org/debian unstable/main armhf libasound2t64 armhf 1.2.11-1+b1 [316 kB] Get: 256 http://deb.debian.org/debian unstable/main armhf libgif7 armhf 5.2.2-1 [41.2 kB] Get: 257 http://deb.debian.org/debian unstable/main armhf libxtst6 armhf 2:1.2.3-1.1 [26.2 kB] Get: 258 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre armhf 17.0.11~7ea-1 [163 kB] Get: 259 http://deb.debian.org/debian unstable/main armhf default-jre armhf 2:1.17-75 [1056 B] Get: 260 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk-headless armhf 17.0.11~7ea-1 [67.5 MB] Get: 261 http://deb.debian.org/debian unstable/main armhf default-jdk-headless armhf 2:1.17-75 [1108 B] Get: 262 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk armhf 17.0.11~7ea-1 [10.1 kB] Get: 263 http://deb.debian.org/debian unstable/main armhf default-jdk armhf 2:1.17-75 [1068 B] Get: 264 http://deb.debian.org/debian unstable/main armhf mysql-common all 5.8+1.1.0 [6636 B] Get: 265 http://deb.debian.org/debian unstable/main armhf mariadb-common all 1:10.11.7-3 [25.8 kB] Get: 266 http://deb.debian.org/debian unstable/main armhf libmariadb3 armhf 1:10.11.7-3 [159 kB] Get: 267 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.1.5-1.1 [2154 kB] Get: 268 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 269 http://deb.debian.org/debian unstable/main armhf libmariadb-dev armhf 1:10.11.7-3 [248 kB] Get: 270 http://deb.debian.org/debian unstable/main armhf libmariadb-dev-compat armhf 1:10.11.7-3 [24.6 kB] Get: 271 http://deb.debian.org/debian unstable/main armhf default-libmysqlclient-dev armhf 1.1.0+b1 [3376 B] Get: 272 http://deb.debian.org/debian unstable/main armhf python3-lib2to3 all 3.12.2-3 [77.6 kB] Get: 273 http://deb.debian.org/debian unstable/main armhf python3-distutils all 3.12.2-3 [131 kB] Get: 274 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 275 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 276 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240310 [106 kB] Get: 277 http://deb.debian.org/debian unstable/main armhf libtext-iconv-perl armhf 1.7-8+b3 [13.7 kB] Get: 278 http://deb.debian.org/debian unstable/main armhf emacsen-common all 3.0.5 [12.3 kB] Get: 279 http://deb.debian.org/debian unstable/main armhf dictionaries-common all 1.29.7 [184 kB] Get: 280 http://deb.debian.org/debian unstable/main armhf xml-core all 0.19 [20.1 kB] Get: 281 http://deb.debian.org/debian unstable/main armhf docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 282 http://deb.debian.org/debian unstable/main armhf libllvm16t64 armhf 1:16.0.6-24 [20.6 MB] Get: 283 http://deb.debian.org/debian unstable/main armhf libclang-cpp16t64 armhf 1:16.0.6-24 [9878 kB] Get: 284 http://deb.debian.org/debian unstable/main armhf libclang1-16t64 armhf 1:16.0.6-24 [5547 kB] Get: 285 http://deb.debian.org/debian unstable/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB] Get: 286 http://deb.debian.org/debian unstable/main armhf doxygen armhf 1.9.8+ds-2+b1 [4461 kB] Get: 287 http://deb.debian.org/debian unstable/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 288 http://deb.debian.org/debian unstable/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 289 http://deb.debian.org/debian unstable/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 290 http://deb.debian.org/debian unstable/main armhf gdal-data all 3.8.4+dfsg-3 [545 kB] Get: 291 http://deb.debian.org/debian unstable/main armhf gdal-plugins armhf 3.8.4+dfsg-3+b1 [330 kB] Get: 292 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14-20240315-1 [264 kB] Get: 293 http://deb.debian.org/debian unstable/main armhf libgfortran-13-dev armhf 13.2.0-23 [306 kB] Get: 294 http://deb.debian.org/debian unstable/main armhf gfortran-13-arm-linux-gnueabihf armhf 13.2.0-23 [8198 kB] Get: 295 http://deb.debian.org/debian unstable/main armhf gfortran-13 armhf 13.2.0-23 [11.2 kB] Get: 296 http://deb.debian.org/debian unstable/main armhf gfortran-arm-linux-gnueabihf armhf 4:13.2.0-7 [1288 B] Get: 297 http://deb.debian.org/debian unstable/main armhf gfortran armhf 4:13.2.0-7 [1432 B] Get: 298 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.7.1-1 [383 kB] Get: 299 http://deb.debian.org/debian unstable/main armhf liberror-perl all 0.17029-2 [29.0 kB] Get: 300 http://deb.debian.org/debian unstable/main armhf git-man all 1:2.43.0-1 [2112 kB] Get: 301 http://deb.debian.org/debian unstable/main armhf git armhf 1:2.43.0-1+b1 [6296 kB] Get: 302 http://deb.debian.org/debian unstable/main armhf libcdt5 armhf 2.42.2-9+b1 [37.3 kB] Get: 303 http://deb.debian.org/debian unstable/main armhf libcgraph6 armhf 2.42.2-9+b1 [56.3 kB] Get: 304 http://deb.debian.org/debian unstable/main armhf libaom3 armhf 3.8.2-2 [1526 kB] Get: 305 http://deb.debian.org/debian unstable/main armhf libdav1d7 armhf 1.4.1-1 [262 kB] Get: 306 http://deb.debian.org/debian unstable/main armhf libabsl20220623 armhf 20220623.1-3 [361 kB] Get: 307 http://deb.debian.org/debian unstable/main armhf libgav1-1 armhf 0.18.0-1+b1 [284 kB] Get: 308 http://deb.debian.org/debian unstable/main armhf librav1e0 armhf 0.7.1-2 [546 kB] Get: 309 http://deb.debian.org/debian unstable/main armhf libsvtav1enc1d1 armhf 1.7.0+dfsg-2+b1 [936 kB] Get: 310 http://deb.debian.org/debian unstable/main armhf libyuv0 armhf 0.0~git202401110.af6ac82-1 [85.1 kB] Get: 311 http://deb.debian.org/debian unstable/main armhf libavif16 armhf 1.0.4-1+b2 [95.2 kB] Get: 312 http://deb.debian.org/debian unstable/main armhf libheif-plugin-dav1d armhf 1.17.6-1+b2 [9508 B] Get: 313 http://deb.debian.org/debian unstable/main armhf libde265-0 armhf 1.0.15-1+b1 [145 kB] Get: 314 http://deb.debian.org/debian unstable/main armhf libheif-plugin-libde265 armhf 1.17.6-1+b2 [12.3 kB] Get: 315 http://deb.debian.org/debian unstable/main armhf libheif1 armhf 1.17.6-1+b2 [243 kB] Get: 316 http://deb.debian.org/debian unstable/main armhf libxpm4 armhf 1:3.5.17-1+b1 [50.0 kB] Get: 317 http://deb.debian.org/debian unstable/main armhf libgd3 armhf 2.3.3-9+b2 [104 kB] Get: 318 http://deb.debian.org/debian unstable/main armhf libgts-0.7-5t64 armhf 0.7.6+darcs121130-5.2 [132 kB] Get: 319 http://deb.debian.org/debian unstable/main armhf libltdl7 armhf 2.4.7-7 [390 kB] Get: 320 http://deb.debian.org/debian unstable/main armhf libpathplan4 armhf 2.42.2-9+b1 [39.7 kB] Get: 321 http://deb.debian.org/debian unstable/main armhf libgvc6 armhf 2.42.2-9+b1 [578 kB] Get: 322 http://deb.debian.org/debian unstable/main armhf libgvpr2 armhf 2.42.2-9+b1 [165 kB] Get: 323 http://deb.debian.org/debian unstable/main armhf liblab-gamut1 armhf 2.42.2-9+b1 [198 kB] Get: 324 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2 [159 kB] Get: 325 http://deb.debian.org/debian unstable/main armhf libxmu6 armhf 2:1.1.3-3+b1 [51.0 kB] Get: 326 http://deb.debian.org/debian unstable/main armhf libxaw7 armhf 2:1.0.14-1+b1 [165 kB] Get: 327 http://deb.debian.org/debian unstable/main armhf graphviz armhf 2.42.2-9+b1 [499 kB] Get: 328 http://deb.debian.org/debian unstable/main armhf hdf5-helpers armhf 1.10.10+repack-3.3 [23.4 kB] Get: 329 http://deb.debian.org/debian unstable/main armhf htmldoc-common all 1.9.18-1 [1993 kB] Get: 330 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 331 http://deb.debian.org/debian unstable/main armhf libfltk1.3t64 armhf 1.3.8-6.1 [492 kB] Get: 332 http://deb.debian.org/debian unstable/main armhf libfltk-images1.3t64 armhf 1.3.8-6.1 [46.7 kB] Get: 333 http://deb.debian.org/debian unstable/main armhf htmldoc armhf 1.9.18-1 [154 kB] Get: 334 http://deb.debian.org/debian unstable/main armhf hunspell-en-us all 1:2020.12.07-2 [269 kB] Get: 335 http://deb.debian.org/debian unstable/main armhf libnl-3-200 armhf 3.7.0-0.3 [51.7 kB] Get: 336 http://deb.debian.org/debian unstable/main armhf libnl-route-3-200 armhf 3.7.0-0.3 [153 kB] Get: 337 http://deb.debian.org/debian unstable/main armhf libibverbs1 armhf 50.0-2+b1 [55.0 kB] Get: 338 http://deb.debian.org/debian unstable/main armhf ibverbs-providers armhf 50.0-2+b1 [28.7 kB] Get: 339 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 340 http://deb.debian.org/debian unstable/main armhf tex-common all 6.18 [32.5 kB] Get: 341 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 342 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 343 http://deb.debian.org/debian unstable/main armhf libkpathsea6 armhf 2023.20230311.66589-9+b1 [145 kB] Get: 344 http://deb.debian.org/debian unstable/main armhf libptexenc1 armhf 2023.20230311.66589-9+b1 [43.1 kB] Get: 345 http://deb.debian.org/debian unstable/main armhf libsynctex2 armhf 2023.20230311.66589-9+b1 [48.8 kB] Get: 346 http://deb.debian.org/debian unstable/main armhf libtexlua53-5 armhf 2023.20230311.66589-9+b1 [82.4 kB] Get: 347 http://deb.debian.org/debian unstable/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 348 http://deb.debian.org/debian unstable/main armhf libpotrace0 armhf 1.16-2+b1 [22.6 kB] Get: 349 http://deb.debian.org/debian unstable/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB] Get: 350 http://deb.debian.org/debian unstable/main armhf libzzip-0-13t64 armhf 0.13.72+dfsg.1-1.2 [52.7 kB] Get: 351 http://deb.debian.org/debian unstable/main armhf texlive-binaries armhf 2023.20230311.66589-9+b1 [6066 kB] Get: 352 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 353 http://deb.debian.org/debian unstable/main armhf texlive-base all 2023.20240207-1 [22.0 MB] Get: 354 http://deb.debian.org/debian unstable/main armhf texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 355 http://deb.debian.org/debian unstable/main armhf latexmk all 1:4.83-1 [217 kB] Get: 356 http://deb.debian.org/debian unstable/main armhf libaec0 armhf 1.1.3-1 [21.5 kB] Get: 357 http://deb.debian.org/debian unstable/main armhf libsz2 armhf 1.1.3-1 [7724 B] Get: 358 http://deb.debian.org/debian unstable/main armhf libaec-dev armhf 1.1.3-1 [18.8 kB] Get: 359 http://deb.debian.org/debian unstable/main armhf libaom-dev armhf 3.8.2-2 [1741 kB] Get: 360 http://deb.debian.org/debian unstable/main armhf libapache-pom-java all 29-2 [5276 B] Get: 361 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 362 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 363 http://deb.debian.org/debian unstable/main armhf libarpack2t64 armhf 3.9.1-1.1+b1 [85.0 kB] Get: 364 http://deb.debian.org/debian unstable/main armhf libsuperlu6 armhf 6.0.1+dfsg1-1+b1 [139 kB] Get: 365 http://deb.debian.org/debian unstable/main armhf libarmadillo12 armhf 1:12.6.7+dfsg-1+b1 [99.9 kB] Get: 366 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 367 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Get: 368 http://deb.debian.org/debian unstable/main armhf libarpack2-dev armhf 3.9.1-1.1+b1 [103 kB] Get: 369 http://deb.debian.org/debian unstable/main armhf libhdf5-103-1t64 armhf 1.10.10+repack-3.3 [1190 kB] Get: 370 http://deb.debian.org/debian unstable/main armhf libhdf5-fortran-102t64 armhf 1.10.10+repack-3.3 [78.7 kB] Get: 371 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-100t64 armhf 1.10.10+repack-3.3 [61.2 kB] Get: 372 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-fortran-100t64 armhf 1.10.10+repack-3.3 [34.7 kB] Get: 373 http://deb.debian.org/debian unstable/main armhf libhdf5-cpp-103-1t64 armhf 1.10.10+repack-3.3 [121 kB] Get: 374 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-cpp-100t64 armhf 1.10.10+repack-3.3 [20.9 kB] Get: 375 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2+b2 [260 kB] Get: 376 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-2+b2 [72.1 kB] Get: 377 http://deb.debian.org/debian unstable/main armhf libcurl4-openssl-dev armhf 8.7.1-1 [504 kB] Get: 378 http://deb.debian.org/debian unstable/main armhf libhdf5-dev armhf 1.10.10+repack-3.3 [2613 kB] Get: 379 http://deb.debian.org/debian unstable/main armhf libsuperlu-dev armhf 6.0.1+dfsg1-1+b1 [21.8 kB] Get: 380 http://deb.debian.org/debian unstable/main armhf libarmadillo-dev armhf 1:12.6.7+dfsg-1+b1 [408 kB] Get: 381 http://deb.debian.org/debian unstable/main armhf libaspell15 armhf 0.60.8.1-1+b1 [292 kB] Get: 382 http://deb.debian.org/debian unstable/main armhf libva2 armhf 2.20.0-2 [65.3 kB] Get: 383 http://deb.debian.org/debian unstable/main armhf libva-drm2 armhf 2.20.0-2 [17.2 kB] Get: 384 http://deb.debian.org/debian unstable/main armhf libva-x11-2 armhf 2.20.0-2 [20.8 kB] Get: 385 http://deb.debian.org/debian unstable/main armhf libvdpau1 armhf 1.5-2 [24.4 kB] Get: 386 http://deb.debian.org/debian unstable/main armhf ocl-icd-libopencl1 armhf 2.3.2-1 [36.8 kB] Get: 387 http://deb.debian.org/debian unstable/main armhf libavutil58 armhf 7:6.1.1-3+b1 [358 kB] Get: 388 http://deb.debian.org/debian unstable/main armhf libcodec2-1.2 armhf 1.2.0-2+b1 [8153 kB] Get: 389 http://deb.debian.org/debian unstable/main armhf libgsm1 armhf 1.0.22-1 [27.9 kB] Get: 390 http://deb.debian.org/debian unstable/main armhf libhwy1t64 armhf 1.0.7-8.1 [214 kB] Get: 391 http://deb.debian.org/debian unstable/main armhf libjxl0.7 armhf 0.7.0-10.2+b3 [644 kB] Get: 392 http://deb.debian.org/debian unstable/main armhf libmp3lame0 armhf 3.100-6+b2 [344 kB] Get: 393 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 394 http://deb.debian.org/debian unstable/main armhf libopus0 armhf 1.4-1+b1 [174 kB] Get: 395 http://deb.debian.org/debian unstable/main armhf libcairo-gobject2 armhf 1.18.0-3 [128 kB] Get: 396 http://deb.debian.org/debian unstable/main armhf librsvg2-2 armhf 2.58.0+dfsg-1 [1651 kB] Get: 397 http://deb.debian.org/debian unstable/main armhf libshine3 armhf 3.1.1-2+b1 [21.0 kB] Get: 398 http://deb.debian.org/debian unstable/main armhf libsnappy1v5 armhf 1.1.10-1+b1 [25.2 kB] Get: 399 http://deb.debian.org/debian unstable/main armhf libspeex1 armhf 1.2.1-2+b1 [47.2 kB] Get: 400 http://deb.debian.org/debian unstable/main armhf libsoxr0 armhf 0.1.3-4 [67.0 kB] Get: 401 http://deb.debian.org/debian unstable/main armhf libswresample4 armhf 7:6.1.1-3+b1 [86.3 kB] Get: 402 http://deb.debian.org/debian unstable/main armhf libogg0 armhf 1.3.5-3 [21.6 kB] Get: 403 http://deb.debian.org/debian unstable/main armhf libtheora0 armhf 1.1.1+dfsg.1-16.1+b2 [129 kB] Get: 404 http://deb.debian.org/debian unstable/main armhf libtwolame0 armhf 0.4.0-2+b1 [45.9 kB] Get: 405 http://deb.debian.org/debian unstable/main armhf libvorbis0a armhf 1.3.7-2 [79.0 kB] Get: 406 http://deb.debian.org/debian unstable/main armhf libvorbisenc2 armhf 1.3.7-2 [69.3 kB] Get: 407 http://deb.debian.org/debian unstable/main armhf libvpx8 armhf 1.13.1-2 [1359 kB] Get: 408 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.3.2-0.4+b1 [116 kB] Get: 409 http://deb.debian.org/debian unstable/main armhf libx264-164 armhf 2:0.164.3108+git31e19f9-1 [424 kB] Get: 410 http://deb.debian.org/debian unstable/main armhf libx265-199 armhf 3.5-2+b1 [580 kB] Get: 411 http://deb.debian.org/debian unstable/main armhf libxvidcore4 armhf 2:1.3.7-1+b1 [194 kB] Get: 412 http://deb.debian.org/debian unstable/main armhf libzvbi-common all 0.2.42-2 [70.4 kB] Get: 413 http://deb.debian.org/debian unstable/main armhf libzvbi0t64 armhf 0.2.42-2 [246 kB] Get: 414 http://deb.debian.org/debian unstable/main armhf libavcodec60 armhf 7:6.1.1-3+b1 [4846 kB] Get: 415 http://deb.debian.org/debian unstable/main armhf libavutil-dev armhf 7:6.1.1-3+b1 [507 kB] Get: 416 http://deb.debian.org/debian unstable/main armhf libswresample-dev armhf 7:6.1.1-3+b1 [95.5 kB] Get: 417 http://deb.debian.org/debian unstable/main armhf libavcodec-dev armhf 7:6.1.1-3+b1 [5411 kB] Get: 418 http://deb.debian.org/debian unstable/main armhf libudfread0 armhf 1.1.2-1 [14.4 kB] Get: 419 http://deb.debian.org/debian unstable/main armhf libbluray2 armhf 1:1.3.4-1 [122 kB] Get: 420 http://deb.debian.org/debian unstable/main armhf libchromaprint1 armhf 1.5.1-5 [34.3 kB] Get: 421 http://deb.debian.org/debian unstable/main armhf libgme0 armhf 0.6.3-7+b1 [106 kB] Get: 422 http://deb.debian.org/debian unstable/main armhf libmpg123-0 armhf 1.32.5-1 [127 kB] Get: 423 http://deb.debian.org/debian unstable/main armhf libvorbisfile3 armhf 1.3.7-2 [20.3 kB] Get: 424 http://deb.debian.org/debian unstable/main armhf libopenmpt0t64 armhf 0.7.3-1.1 [698 kB] Get: 425 http://deb.debian.org/debian unstable/main armhf librabbitmq4 armhf 0.11.0-1+b2 [37.0 kB] Get: 426 http://deb.debian.org/debian unstable/main armhf libcjson1 armhf 1.7.17-2 [25.3 kB] Get: 427 http://deb.debian.org/debian unstable/main armhf libmbedcrypto7t64 armhf 2.28.7-1.1 [248 kB] Get: 428 http://deb.debian.org/debian unstable/main armhf librist4 armhf 0.2.10+dfsg-1+b2 [65.5 kB] Get: 429 http://deb.debian.org/debian unstable/main armhf libsrt1.5-gnutls armhf 1.5.3-1+b2 [293 kB] Get: 430 http://deb.debian.org/debian unstable/main armhf libssh-gcrypt-4 armhf 0.10.6-2+b1 [191 kB] Get: 431 http://deb.debian.org/debian unstable/main armhf libnorm1t64 armhf 1.5.9+dfsg-3.1 [186 kB] Get: 432 http://deb.debian.org/debian unstable/main armhf libpgm-5.3-0t64 armhf 5.3.128~dfsg-2.1 [154 kB] Get: 433 http://deb.debian.org/debian unstable/main armhf libsodium23 armhf 1.0.18-1 [147 kB] Get: 434 http://deb.debian.org/debian unstable/main armhf libzmq5 armhf 4.3.5-1+b2 [238 kB] Get: 435 http://deb.debian.org/debian unstable/main armhf libavformat60 armhf 7:6.1.1-3+b1 [1053 kB] Get: 436 http://deb.debian.org/debian unstable/main armhf libavformat-dev armhf 7:6.1.1-3+b1 [1291 kB] Get: 437 http://deb.debian.org/debian unstable/main armhf libblosc1 armhf 1.21.5+ds-1+b1 [37.2 kB] Get: 438 http://deb.debian.org/debian unstable/main armhf libblosc-dev armhf 1.21.5+ds-1+b1 [48.1 kB] Get: 439 http://deb.debian.org/debian unstable/main armhf libboost1.83-dev armhf 1.83.0-2.1+b1 [10.6 MB] Get: 440 http://deb.debian.org/debian unstable/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 441 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b3 [292 kB] Get: 442 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-5.1 [28.3 kB] Get: 443 http://deb.debian.org/debian unstable/main armhf libcfitsio10t64 armhf 4.3.1-1.1+b1 [522 kB] Get: 444 http://deb.debian.org/debian unstable/main armhf libcfitsio-dev armhf 4.3.1-1.1+b1 [581 kB] Get: 445 http://deb.debian.org/debian unstable/main armhf libllvm15t64 armhf 1:15.0.7-14 [20.6 MB] Get: 446 http://deb.debian.org/debian unstable/main armhf libclang1-15t64 armhf 1:15.0.7-14 [5352 kB] Get: 447 http://deb.debian.org/debian unstable/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 448 http://deb.debian.org/debian unstable/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 449 http://deb.debian.org/debian unstable/main armhf libdav1d-dev armhf 1.4.1-1 [26.3 kB] Get: 450 http://deb.debian.org/debian unstable/main armhf libde265-dev armhf 1.0.15-1+b1 [14.4 kB] Get: 451 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 452 http://deb.debian.org/debian unstable/main armhf libdouble-conversion-dev armhf 3.3.0-1+b1 [59.4 kB] Get: 453 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 454 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 455 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 456 http://deb.debian.org/debian unstable/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 457 http://deb.debian.org/debian unstable/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 458 http://deb.debian.org/debian unstable/main armhf libhunspell-1.7-0 armhf 1.7.2+really1.7.2-10+b2 [216 kB] Get: 459 http://deb.debian.org/debian unstable/main armhf libenchant-2-2 armhf 2.3.3-2+b2 [40.3 kB] Get: 460 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-8.1+b2 [164 kB] Get: 461 http://deb.debian.org/debian unstable/main armhf libevent-core-2.1-7t64 armhf 2.1.12-stable-8.1+b2 [122 kB] Get: 462 http://deb.debian.org/debian unstable/main armhf libevent-extra-2.1-7t64 armhf 2.1.12-stable-8.1+b2 [99.2 kB] Get: 463 http://deb.debian.org/debian unstable/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-8.1+b2 [53.8 kB] Get: 464 http://deb.debian.org/debian unstable/main armhf libevent-openssl-2.1-7t64 armhf 2.1.12-stable-8.1+b2 [58.7 kB] Get: 465 http://deb.debian.org/debian unstable/main armhf libevent-dev armhf 2.1.12-stable-8.1+b2 [292 kB] Get: 466 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 467 http://deb.debian.org/debian unstable/main armhf librdmacm1t64 armhf 50.0-2+b1 [62.1 kB] Get: 468 http://deb.debian.org/debian unstable/main armhf libfabric1 armhf 1.17.0-3+b1 [386 kB] Get: 469 http://deb.debian.org/debian unstable/main armhf libfftw3-double3 armhf 3.3.10-1+b2 [330 kB] Get: 470 http://deb.debian.org/debian unstable/main armhf libfftw3-single3 armhf 3.3.10-1+b2 [521 kB] Get: 471 http://deb.debian.org/debian unstable/main armhf libfftw3-bin armhf 3.3.10-1+b2 [41.9 kB] Get: 472 http://deb.debian.org/debian unstable/main armhf libfftw3-dev armhf 3.3.10-1+b2 [834 kB] Get: 473 http://deb.debian.org/debian unstable/main armhf libfontbox-java all 1:1.8.16-5 [211 kB] Get: 474 http://deb.debian.org/debian unstable/main armhf libpng-dev armhf 1.6.43-5 [344 kB] Get: 475 http://deb.debian.org/debian unstable/main armhf libfreetype-dev armhf 2.13.2+dfsg-1+b2 [546 kB] Get: 476 http://deb.debian.org/debian unstable/main armhf uuid-dev armhf 2.39.3-11 [40.4 kB] Get: 477 http://deb.debian.org/debian unstable/main armhf libfontconfig-dev armhf 2.15.0-1.1 [395 kB] Get: 478 http://deb.debian.org/debian unstable/main armhf libfontconfig1-dev armhf 2.15.0-1.1 [269 kB] Get: 479 http://deb.debian.org/debian unstable/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 480 http://deb.debian.org/debian unstable/main armhf libminizip1t64 armhf 1:1.3.dfsg-3.1 [50.0 kB] Get: 481 http://deb.debian.org/debian unstable/main armhf libfreexl1 armhf 2.0.0-1+b2 [35.2 kB] Get: 482 http://deb.debian.org/debian unstable/main armhf libminizip-dev armhf 1:1.3.dfsg-3.1 [58.3 kB] Get: 483 http://deb.debian.org/debian unstable/main armhf libfreexl-dev armhf 2.0.0-1+b2 [37.7 kB] Get: 484 http://deb.debian.org/debian unstable/main armhf libfyba0t64 armhf 4.1.1-11 [100 kB] Get: 485 http://deb.debian.org/debian unstable/main armhf libfyba-dev armhf 4.1.1-11 [162 kB] Get: 486 http://deb.debian.org/debian unstable/main armhf libgeos3.12.1t64 armhf 3.12.1-3 [799 kB] Get: 487 http://deb.debian.org/debian unstable/main armhf libgeos-c1t64 armhf 3.12.1-3 [86.7 kB] Get: 488 http://deb.debian.org/debian unstable/main armhf proj-data all 9.4.0-1 [6258 kB] Get: 489 http://deb.debian.org/debian unstable/main armhf libproj25 armhf 9.4.0-1+b1 [1169 kB] Get: 490 http://deb.debian.org/debian unstable/main armhf libgeotiff5 armhf 1.7.1-5 [59.9 kB] Get: 491 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.2 [10.9 kB] Get: 492 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.2 [71.0 kB] Get: 493 http://deb.debian.org/debian unstable/main armhf libhdf4-0-alt armhf 4.2.16-4+b1 [227 kB] Get: 494 http://deb.debian.org/debian unstable/main armhf libjson-c5 armhf 0.17-1+b1 [40.4 kB] Get: 495 http://deb.debian.org/debian unstable/main armhf liburiparser1 armhf 0.9.7+dfsg-2+b1 [37.4 kB] Get: 496 http://deb.debian.org/debian unstable/main armhf libkmlbase1t64 armhf 1.3.0-12 [41.9 kB] Get: 497 http://deb.debian.org/debian unstable/main armhf libkmldom1t64 armhf 1.3.0-12 [134 kB] Get: 498 http://deb.debian.org/debian unstable/main armhf libkmlengine1t64 armhf 1.3.0-12 [67.0 kB] Get: 499 http://deb.debian.org/debian unstable/main armhf libnetcdf19t64 armhf 1:4.9.2-5+b1 [419 kB] Get: 500 http://deb.debian.org/debian unstable/main armhf libodbc2 armhf 2.3.12-1+b2 [130 kB] Get: 501 http://deb.debian.org/debian unstable/main armhf unixodbc-common all 2.3.12-1 [8496 B] Get: 502 http://deb.debian.org/debian unstable/main armhf libodbcinst2 armhf 2.3.12-1+b2 [28.8 kB] Get: 503 http://deb.debian.org/debian unstable/main armhf libogdi4.1 armhf 4.1.1+ds-3+b1 [180 kB] Get: 504 http://deb.debian.org/debian unstable/main armhf libpoppler126t64 armhf 22.12.0-2.2 [1708 kB] Get: 505 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 506 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 507 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.16+dfsg-2 [161 kB] Get: 508 http://deb.debian.org/debian unstable/main armhf libpq5 armhf 16.2-2+b1 [198 kB] Get: 509 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b1 [219 kB] Get: 510 http://deb.debian.org/debian unstable/main armhf librttopo1 armhf 1.1.0-3+b1 [147 kB] Get: 511 http://deb.debian.org/debian unstable/main armhf libspatialite8t64 armhf 5.1.0-3+b1 [1725 kB] Get: 512 http://deb.debian.org/debian unstable/main armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.2+b1 [745 kB] Get: 513 http://deb.debian.org/debian unstable/main armhf libgdal34t64 armhf 3.8.4+dfsg-3+b1 [7355 kB] Get: 514 http://deb.debian.org/debian unstable/main armhf libgeos-dev armhf 3.12.1-3 [56.2 kB] Get: 515 http://deb.debian.org/debian unstable/main armhf libsqlite3-dev armhf 3.45.2-1 [986 kB] Get: 516 http://deb.debian.org/debian unstable/main armhf libjbig-dev armhf 2.1-6.1+b1 [27.8 kB] Get: 517 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [281 kB] Get: 518 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.5+dfsg2-2 [322 kB] Get: 519 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.3.2-0.4+b1 [107 kB] Get: 520 http://deb.debian.org/debian unstable/main armhf libwebpdecoder3 armhf 1.3.2-0.4+b1 [177 kB] Get: 521 http://deb.debian.org/debian unstable/main armhf libsharpyuv-dev armhf 1.3.2-0.4+b1 [108 kB] Get: 522 http://deb.debian.org/debian unstable/main armhf libwebp-dev armhf 1.3.2-0.4+b1 [383 kB] Get: 523 http://deb.debian.org/debian unstable/main armhf libtiffxx6 armhf 4.5.1+git230720-4 [149 kB] Get: 524 http://deb.debian.org/debian unstable/main armhf liblerc-dev armhf 4.0.0+ds-4+b1 [153 kB] Get: 525 http://deb.debian.org/debian unstable/main armhf libtiff-dev armhf 4.5.1+git230720-4 [441 kB] Get: 526 http://deb.debian.org/debian unstable/main armhf libproj-dev armhf 9.4.0-1+b1 [133 kB] Get: 527 http://deb.debian.org/debian unstable/main armhf libgeotiff-dev armhf 1.7.1-5 [91.0 kB] Get: 528 http://deb.debian.org/debian unstable/main armhf libgif-dev armhf 5.2.2-1 [44.0 kB] Get: 529 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 530 http://deb.debian.org/debian unstable/main armhf libxml2-dev armhf 2.9.14+dfsg-1.3+b2 [717 kB] Get: 531 http://deb.debian.org/debian unstable/main armhf libnetcdf-dev armhf 1:4.9.2-5+b1 [104 kB] Get: 532 http://deb.debian.org/debian unstable/main armhf libhdf4-alt-dev armhf 4.2.16-4+b1 [322 kB] Get: 533 http://deb.debian.org/debian unstable/main armhf libx265-dev armhf 3.5-2+b1 [603 kB] Get: 534 http://deb.debian.org/debian unstable/main armhf libheif-dev armhf 1.17.6-1+b2 [43.4 kB] Get: 535 http://deb.debian.org/debian unstable/main armhf libjson-c-dev armhf 0.17-1+b1 [68.3 kB] Get: 536 http://deb.debian.org/debian unstable/main armhf libkmlconvenience1t64 armhf 1.3.0-12 [44.0 kB] Get: 537 http://deb.debian.org/debian unstable/main armhf libkmlregionator1t64 armhf 1.3.0-12 [19.3 kB] Get: 538 http://deb.debian.org/debian unstable/main armhf libkmlxsd1t64 armhf 1.3.0-12 [27.6 kB] Get: 539 http://deb.debian.org/debian unstable/main armhf liburiparser-dev armhf 0.9.7+dfsg-2+b1 [25.7 kB] Get: 540 http://deb.debian.org/debian unstable/main armhf libkml-dev armhf 1.3.0-12 [662 kB] Get: 541 http://deb.debian.org/debian unstable/main armhf libltdl-dev armhf 2.4.7-7 [162 kB] Get: 542 http://deb.debian.org/debian unstable/main armhf liblz4-dev armhf 1.9.4-1+b2 [75.1 kB] Get: 543 http://deb.debian.org/debian unstable/main armhf libtirpc-dev armhf 1.3.4+ds-1.2 [180 kB] Get: 544 http://deb.debian.org/debian unstable/main armhf libogdi-dev armhf 4.1.1+ds-3+b1 [35.5 kB] Get: 545 http://deb.debian.org/debian unstable/main armhf libopenjp2-7-dev armhf 2.5.0-2+b3 [242 kB] Get: 546 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.42-4+b1 [203 kB] Get: 547 http://deb.debian.org/debian unstable/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.3 kB] Get: 548 http://deb.debian.org/debian unstable/main armhf libpcre2-dev armhf 10.42-4+b1 [668 kB] Get: 549 http://deb.debian.org/debian unstable/main armhf libpoppler-dev armhf 22.12.0-2.2 [7624 B] Get: 550 http://deb.debian.org/debian unstable/main armhf libpoppler-private-dev armhf 22.12.0-2.2 [189 kB] Get: 551 http://deb.debian.org/debian unstable/main armhf libpq-dev armhf 16.2-2+b1 [131 kB] Get: 552 http://deb.debian.org/debian unstable/main armhf libqhull8.0 armhf 2020.2-6+b1 [220 kB] Get: 553 http://deb.debian.org/debian unstable/main armhf libqhullcpp8.0 armhf 2020.2-6+b1 [102 kB] Get: 554 http://deb.debian.org/debian unstable/main armhf libqhull-dev armhf 2020.2-6+b1 [469 kB] Get: 555 http://deb.debian.org/debian unstable/main armhf librttopo-dev armhf 1.1.0-3+b1 [189 kB] Get: 556 http://deb.debian.org/debian unstable/main armhf libspatialite-dev armhf 5.1.0-3+b1 [2012 kB] Get: 557 http://deb.debian.org/debian unstable/main armhf libxerces-c-dev armhf 3.2.4+debian-1.2+b1 [1552 kB] Get: 558 http://deb.debian.org/debian unstable/main armhf libodbccr2 armhf 2.3.12-1+b2 [15.1 kB] Get: 559 http://deb.debian.org/debian unstable/main armhf unixodbc-dev armhf 2.3.12-1+b2 [209 kB] Get: 560 http://deb.debian.org/debian unstable/main armhf libgdal-dev armhf 3.8.4+dfsg-3+b1 [518 kB] Get: 561 http://deb.debian.org/debian unstable/main armhf libglvnd-core-dev armhf 1.7.0-1 [13.1 kB] Get: 562 http://deb.debian.org/debian unstable/main armhf libopengl0 armhf 1.7.0-1 [31.9 kB] Get: 563 http://deb.debian.org/debian unstable/main armhf libopengl-dev armhf 1.7.0-1 [5104 B] Get: 564 http://deb.debian.org/debian unstable/main armhf libglvnd-dev armhf 1.7.0-1 [4868 B] Get: 565 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dev armhf 24.0.4-1 [17.0 kB] Get: 566 http://deb.debian.org/debian unstable/main armhf libgl2ps1.4 armhf 1.4.2+dfsg1-2 [36.5 kB] Get: 567 http://deb.debian.org/debian unstable/main armhf libgl2ps-dev armhf 1.4.2+dfsg1-2 [24.8 kB] Get: 568 http://deb.debian.org/debian unstable/main armhf libglew2.2 armhf 2.2.0-4+b1 [172 kB] Get: 569 http://deb.debian.org/debian unstable/main armhf libglu1-mesa armhf 9.0.2-1.1 [137 kB] Get: 570 http://deb.debian.org/debian unstable/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [177 kB] Get: 571 http://deb.debian.org/debian unstable/main armhf libglew-dev armhf 2.2.0-4+b1 [266 kB] Get: 572 http://deb.debian.org/debian unstable/main armhf libhwloc15 armhf 2.10.0-1+b1 [133 kB] Get: 573 http://deb.debian.org/debian unstable/main armhf libmunge2 armhf 0.5.15-4 [16.4 kB] Get: 574 http://deb.debian.org/debian unstable/main armhf libpciaccess0 armhf 0.17-3 [49.0 kB] Get: 575 http://deb.debian.org/debian unstable/main armhf libxnvctrl0 armhf 535.171.04-1 [12.8 kB] Get: 576 http://deb.debian.org/debian unstable/main armhf libhwloc-plugins armhf 2.10.0-1+b1 [16.1 kB] Get: 577 http://deb.debian.org/debian unstable/main armhf libpmix2t64 armhf 5.0.1-4.1 [545 kB] Get: 578 http://deb.debian.org/debian unstable/main armhf libopenmpi3t64 armhf 4.1.6-7+b1 [1857 kB] Get: 579 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-103-1t64 armhf 1.10.10+repack-3.3 [1248 kB] Get: 580 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-fortran-102t64 armhf 1.10.10+repack-3.3 [79.3 kB] Get: 581 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-hl-100t64 armhf 1.10.10+repack-3.3 [61.3 kB] Get: 582 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-hl-fortran-100t64 armhf 1.10.10+repack-3.3 [34.8 kB] Get: 583 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-cpp-103-1t64 armhf 1.10.10+repack-3.3 [121 kB] Get: 584 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-hl-cpp-100t64 armhf 1.10.10+repack-3.3 [20.9 kB] Get: 585 http://deb.debian.org/debian unstable/main armhf openmpi-common all 4.1.6-7 [168 kB] Get: 586 http://deb.debian.org/debian unstable/main armhf libnl-3-dev armhf 3.7.0-0.3 [94.3 kB] Get: 587 http://deb.debian.org/debian unstable/main armhf libnl-route-3-dev armhf 3.7.0-0.3 [180 kB] Get: 588 http://deb.debian.org/debian unstable/main armhf libibverbs-dev armhf 50.0-2+b1 [198 kB] Get: 589 http://deb.debian.org/debian unstable/main armhf libnuma1 armhf 2.0.18-1 [18.5 kB] Get: 590 http://deb.debian.org/debian unstable/main armhf libnuma-dev armhf 2.0.18-1 [34.2 kB] Get: 591 http://deb.debian.org/debian unstable/main armhf libhwloc-dev armhf 2.10.0-1+b1 [223 kB] Get: 592 http://deb.debian.org/debian unstable/main armhf libpmix-dev armhf 5.0.1-4.1 [3844 kB] Get: 593 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 594 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 595 http://deb.debian.org/debian unstable/main armhf openmpi-bin armhf 4.1.6-7+b1 [195 kB] Get: 596 http://deb.debian.org/debian unstable/main armhf libopenmpi-dev armhf 4.1.6-7+b1 [923 kB] Get: 597 http://deb.debian.org/debian unstable/main armhf libhdf5-openmpi-dev armhf 1.10.10+repack-3.3 [2690 kB] Get: 598 http://deb.debian.org/debian unstable/main armhf mpi-default-dev armhf 1.15 [3152 B] Get: 599 http://deb.debian.org/debian unstable/main armhf libhdf5-mpi-dev armhf 1.10.10+repack-3.3 [15.5 kB] Get: 600 http://deb.debian.org/debian unstable/main armhf libice-dev armhf 2:1.0.10-1 [61.9 kB] Get: 601 http://deb.debian.org/debian unstable/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 602 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 603 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 604 http://deb.debian.org/debian unstable/main armhf libjson-perl all 4.10000-1 [87.5 kB] Get: 605 http://deb.debian.org/debian unstable/main armhf libjsoncpp-dev armhf 1.9.5-6+b2 [24.8 kB] Get: 606 http://deb.debian.org/debian unstable/main armhf libkim-api2 armhf 2.3.0-1+b1 [488 kB] Get: 607 http://deb.debian.org/debian unstable/main armhf libkim-api-dev armhf 2.3.0-1+b1 [104 kB] Get: 608 http://deb.debian.org/debian unstable/main armhf libogg-dev armhf 1.3.5-3 [198 kB] Get: 609 http://deb.debian.org/debian unstable/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 610 http://deb.debian.org/debian unstable/main armhf libpython3.11t64 armhf 3.11.8-3+b3 [1674 kB] Get: 611 http://deb.debian.org/debian unstable/main armhf libpython3.11-dev armhf 3.11.8-3+b3 [3107 kB] Get: 612 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.11.8-1 [9560 B] Get: 613 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.2-4+b2 [1790 kB] Get: 614 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.2-4+b2 [1820 kB] Get: 615 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.2-4+b2 [3363 kB] Get: 616 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.11.8-1 [1072 B] Get: 617 http://deb.debian.org/debian unstable/main armhf libqt5designer5 armhf 5.15.10-6+b1 [2644 kB] Get: 618 http://deb.debian.org/debian unstable/main armhf libqt5designercomponents5 armhf 5.15.10-6+b1 [642 kB] Get: 619 http://deb.debian.org/debian unstable/main armhf libqt5help5 armhf 5.15.10-6+b1 [130 kB] Get: 620 http://deb.debian.org/debian unstable/main armhf libqt5opengl5t64 armhf 5.15.10+dfsg-7.2 [127 kB] Get: 621 http://deb.debian.org/debian unstable/main armhf libqt5opengl5-dev armhf 5.15.10+dfsg-7.2 [50.3 kB] Get: 622 http://deb.debian.org/debian unstable/main armhf libqt5sql5-sqlite armhf 5.15.10+dfsg-7.2 [53.9 kB] Get: 623 http://deb.debian.org/debian unstable/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 624 http://deb.debian.org/debian unstable/main armhf libswscale7 armhf 7:6.1.1-3+b1 [169 kB] Get: 625 http://deb.debian.org/debian unstable/main armhf libswscale-dev armhf 7:6.1.1-3+b1 [186 kB] Get: 626 http://deb.debian.org/debian unstable/main armhf libsymspg2 armhf 2.3.1-1+b1 [185 kB] Get: 627 http://deb.debian.org/debian unstable/main armhf libsymspg-dev armhf 2.3.1-1+b1 [35.5 kB] Get: 628 http://deb.debian.org/debian unstable/main armhf libtbbmalloc2 armhf 2021.11.0-2 [42.1 kB] Get: 629 http://deb.debian.org/debian unstable/main armhf libtbbbind-2-5 armhf 2021.11.0-2 [12.7 kB] Get: 630 http://deb.debian.org/debian unstable/main armhf libtbb12 armhf 2021.11.0-2 [73.4 kB] Get: 631 http://deb.debian.org/debian unstable/main armhf libtbb-dev armhf 2021.11.0-2 [193 kB] Get: 632 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [928 kB] Get: 633 http://deb.debian.org/debian unstable/main armhf libtheora-dev armhf 1.1.1+dfsg.1-16.1+b2 [151 kB] Get: 634 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 635 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.14-1 [693 kB] Get: 636 http://deb.debian.org/debian unstable/main armhf libutfcpp-dev all 3.2.5+really3.2.4-2 [11.8 kB] Get: 637 http://deb.debian.org/debian unstable/main armhf libvoro++1 armhf 0.5+revert-to-0.4.6+dfsg1-1 [103 kB] Get: 638 http://deb.debian.org/debian unstable/main armhf libvtk9.1t64 armhf 9.1.0+really9.1.0+dfsg2-7.1 [15.6 MB] Get: 639 http://deb.debian.org/debian unstable/main armhf libvtk9.1t64-qt armhf 9.1.0+really9.1.0+dfsg2-7.1 [139 kB] Get: 640 http://deb.debian.org/debian unstable/main armhf libvtk9-java armhf 9.1.0+really9.1.0+dfsg2-7.1 [5668 kB] Get: 641 http://deb.debian.org/debian unstable/main armhf libxrender-dev armhf 1:0.9.10-1.1 [38.1 kB] Get: 642 http://deb.debian.org/debian unstable/main armhf libxft-dev armhf 2.3.6-1+b1 [65.9 kB] Get: 643 http://deb.debian.org/debian unstable/main armhf libxss-dev armhf 1:1.2.3-1 [23.1 kB] Get: 644 http://deb.debian.org/debian unstable/main armhf libxt-dev armhf 1:1.2.1-1.2 [385 kB] Get: 645 http://deb.debian.org/debian unstable/main armhf mpi-default-bin armhf 1.15 [2408 B] Get: 646 http://deb.debian.org/debian unstable/main armhf python3-mpi4py armhf 3.1.5-5+b1 [678 kB] Get: 647 http://deb.debian.org/debian unstable/main armhf python3-vtk9 armhf 9.1.0+really9.1.0+dfsg2-7.1 [5823 kB] Get: 648 http://deb.debian.org/debian unstable/main armhf tcl8.6 armhf 8.6.14+dfsg-1 [120 kB] Get: 649 http://deb.debian.org/debian unstable/main armhf tcl8.6-dev armhf 8.6.14+dfsg-1 [940 kB] Get: 650 http://deb.debian.org/debian unstable/main armhf tcl armhf 8.6.14 [4028 B] Get: 651 http://deb.debian.org/debian unstable/main armhf tcl-dev armhf 8.6.14 [6572 B] Get: 652 http://deb.debian.org/debian unstable/main armhf tk8.6 armhf 8.6.14-1 [69.4 kB] Get: 653 http://deb.debian.org/debian unstable/main armhf tk8.6-dev armhf 8.6.14-1 [719 kB] Get: 654 http://deb.debian.org/debian unstable/main armhf tk armhf 8.6.14 [4072 B] Get: 655 http://deb.debian.org/debian unstable/main armhf tk-dev armhf 8.6.14 [3896 B] Get: 656 http://deb.debian.org/debian unstable/main armhf vtk9 armhf 9.1.0+really9.1.0+dfsg2-7.1 [16.9 kB] Get: 657 http://deb.debian.org/debian unstable/main armhf libvtk9-dev armhf 9.1.0+really9.1.0+dfsg2-7.1 [2731 kB] Get: 658 http://deb.debian.org/debian unstable/main armhf qdoc-qt5 armhf 5.15.10-6+b1 [512 kB] Get: 659 http://deb.debian.org/debian unstable/main armhf qhelpgenerator-qt5 armhf 5.15.10-6+b1 [52.0 kB] Get: 660 http://deb.debian.org/debian unstable/main armhf qt5-assistant armhf 5.15.10-6+b1 [330 kB] Get: 661 http://deb.debian.org/debian unstable/main armhf qtattributionsscanner-qt5 armhf 5.15.10-6+b1 [28.7 kB] Get: 662 http://deb.debian.org/debian unstable/main armhf qttools5-dev-tools armhf 5.15.10-6+b1 [913 kB] Get: 663 http://deb.debian.org/debian unstable/main armhf qttools5-dev armhf 5.15.10-6+b1 [177 kB] Get: 664 http://deb.debian.org/debian unstable/main armhf qttools5-private-dev armhf 5.15.10-6+b1 [73.7 kB] Get: 665 http://deb.debian.org/debian unstable/main armhf libvtk9-qt-dev armhf 9.1.0+really9.1.0+dfsg2-7.1 [30.9 kB] Get: 666 http://deb.debian.org/debian unstable/main armhf opencl-c-headers all 3.0~2023.12.14-1 [45.0 kB] Get: 667 http://deb.debian.org/debian unstable/main armhf opencl-clhpp-headers all 3.0~2023.12.14-1 [49.5 kB] Get: 668 http://deb.debian.org/debian unstable/main armhf ocl-icd-opencl-dev armhf 2.3.2-1 [8380 B] Get: 669 http://deb.debian.org/debian unstable/main armhf preview-latex-style all 13.2-1 [350 kB] Get: 670 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.2.0-1 [59.9 kB] Get: 671 http://deb.debian.org/debian unstable/main armhf python3-zipp all 1.0.0-6 [6696 B] Get: 672 http://deb.debian.org/debian unstable/main armhf python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 673 http://deb.debian.org/debian unstable/main armhf python3-packaging all 23.2-1 [44.8 kB] Get: 674 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 675 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB] Get: 676 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.43.0-1 [52.5 kB] Get: 677 http://deb.debian.org/debian unstable/main armhf python3-build all 1.1.1-1 [32.5 kB] Get: 678 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 679 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20240310 [10.9 kB] Get: 680 http://deb.debian.org/debian unstable/main armhf python-babel-localedata all 2.10.3-3 [5611 kB] Get: 681 http://deb.debian.org/debian unstable/main armhf python3-alabaster all 0.7.12-1 [20.8 kB] Get: 682 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.2-4+b2 [653 kB] Get: 683 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.11.8-1 [1056 B] Get: 684 http://deb.debian.org/debian unstable/main armhf python3.11-dev armhf 3.11.8-3+b3 [501 kB] Get: 685 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.11.8-1 [26.1 kB] Get: 686 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.2-4+b2 [499 kB] Get: 687 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.11.8-1 [1072 B] Get: 688 http://deb.debian.org/debian unstable/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 689 http://deb.debian.org/debian unstable/main armhf python3-babel all 2.10.3-3 [100.0 kB] Get: 690 http://deb.debian.org/debian unstable/main armhf python3-roman all 3.3-3 [9880 B] Get: 691 http://deb.debian.org/debian unstable/main armhf python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 692 http://deb.debian.org/debian unstable/main armhf sphinx-common all 7.2.6-6 [702 kB] Get: 693 http://deb.debian.org/debian unstable/main armhf python3-imagesize all 1.4.1-1 [6688 B] Get: 694 http://deb.debian.org/debian unstable/main armhf python3-markupsafe armhf 2.1.5-1 [13.9 kB] Get: 695 http://deb.debian.org/debian unstable/main armhf python3-jinja2 all 3.1.3-1 [119 kB] Get: 696 http://deb.debian.org/debian unstable/main armhf python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 697 http://deb.debian.org/debian unstable/main armhf python3-certifi all 2023.11.17-1 [155 kB] Get: 698 http://deb.debian.org/debian unstable/main armhf python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 699 http://deb.debian.org/debian unstable/main armhf python3-idna all 3.6-2 [37.0 kB] Get: 700 http://deb.debian.org/debian unstable/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 701 http://deb.debian.org/debian unstable/main armhf python3-urllib3 all 1.26.18-2 [116 kB] Get: 702 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 703 http://deb.debian.org/debian unstable/main armhf python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 704 http://deb.debian.org/debian unstable/main armhf python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 705 http://deb.debian.org/debian unstable/main armhf python3-sphinx all 7.2.6-6 [552 kB] Get: 706 http://deb.debian.org/debian unstable/main armhf python3-breathe all 4.35.0-3 [78.2 kB] Get: 707 http://deb.debian.org/debian unstable/main armhf python3-enchant all 3.2.2-1 [39.2 kB] Get: 708 http://deb.debian.org/debian unstable/main armhf python3-pip-whl all 24.0+dfsg-2 [1774 kB] Get: 709 http://deb.debian.org/debian unstable/main armhf python3-setuptools-whl all 68.1.2-2 [797 kB] Get: 710 http://deb.debian.org/debian unstable/main armhf python3-sphinx-tabs all 3.4.4-1 [14.8 kB] Get: 711 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 712 http://deb.debian.org/debian unstable/main armhf python3-sphinxcontrib.spelling all 7.7.0-1 [34.3 kB] Get: 713 http://deb.debian.org/debian unstable/main armhf python3.11-venv armhf 3.11.8-3+b3 [5884 B] Get: 714 http://deb.debian.org/debian unstable/main armhf python3-venv armhf 3.11.8-1 [1188 B] Get: 715 http://deb.debian.org/debian unstable/main armhf sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1021 kB] Get: 716 http://deb.debian.org/debian unstable/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 717 http://deb.debian.org/debian unstable/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 718 http://deb.debian.org/debian unstable/main armhf tex-gyre all 20180621-6 [6209 kB] Get: 719 http://deb.debian.org/debian unstable/main armhf texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 720 http://deb.debian.org/debian unstable/main armhf texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 721 http://deb.debian.org/debian unstable/main armhf texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 722 http://deb.debian.org/debian unstable/main armhf texlive-latex-extra all 2023.20240207-1 [19.7 MB] Get: 723 http://deb.debian.org/debian unstable/main armhf voro++-dev armhf 0.5+revert-to-0.4.6+dfsg1-1 [136 kB] Fetched 638 MB in 9s (74.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19467 files and directories currently installed.) Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libglvnd0:armhf. Preparing to unpack .../001-libglvnd0_1.7.0-1_armhf.deb ... Unpacking libglvnd0:armhf (1.7.0-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../002-libdrm-common_2.4.120-2_all.deb ... Unpacking libdrm-common (2.4.120-2) ... Selecting previously unselected package libdrm2:armhf. Preparing to unpack .../003-libdrm2_2.4.120-2_armhf.deb ... Unpacking libdrm2:armhf (2.4.120-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../004-libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package libwayland-server0:armhf. Preparing to unpack .../005-libwayland-server0_1.22.0-2.1+b1_armhf.deb ... Unpacking libwayland-server0:armhf (1.22.0-2.1+b1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../006-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../007-libbsd0_0.12.2-1_armhf.deb ... Unpacking libbsd0:armhf (0.12.2-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../008-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../009-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libxcb-randr0:armhf. Preparing to unpack .../010-libxcb-randr0_1.15-1_armhf.deb ... Unpacking libxcb-randr0:armhf (1.15-1) ... Selecting previously unselected package libgbm1:armhf. Preparing to unpack .../011-libgbm1_24.0.4-1_armhf.deb ... Unpacking libgbm1:armhf (24.0.4-1) ... Selecting previously unselected package libglapi-mesa:armhf. Preparing to unpack .../012-libglapi-mesa_24.0.4-1_armhf.deb ... Unpacking libglapi-mesa:armhf (24.0.4-1) ... Selecting previously unselected package libwayland-client0:armhf. Preparing to unpack .../013-libwayland-client0_1.22.0-2.1+b1_armhf.deb ... Unpacking libwayland-client0:armhf (1.22.0-2.1+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../014-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../015-libx11-6_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.7-1) ... Selecting previously unselected package libx11-xcb1:armhf. Preparing to unpack .../016-libx11-xcb1_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-xcb1:armhf (2:1.8.7-1) ... Selecting previously unselected package libxcb-dri2-0:armhf. Preparing to unpack .../017-libxcb-dri2-0_1.15-1_armhf.deb ... Unpacking libxcb-dri2-0:armhf (1.15-1) ... Selecting previously unselected package libxcb-dri3-0:armhf. Preparing to unpack .../018-libxcb-dri3-0_1.15-1_armhf.deb ... Unpacking libxcb-dri3-0:armhf (1.15-1) ... Selecting previously unselected package libxcb-present0:armhf. Preparing to unpack .../019-libxcb-present0_1.15-1_armhf.deb ... Unpacking libxcb-present0:armhf (1.15-1) ... Selecting previously unselected package libxcb-sync1:armhf. Preparing to unpack .../020-libxcb-sync1_1.15-1_armhf.deb ... Unpacking libxcb-sync1:armhf (1.15-1) ... Selecting previously unselected package libxcb-xfixes0:armhf. Preparing to unpack .../021-libxcb-xfixes0_1.15-1_armhf.deb ... Unpacking libxcb-xfixes0:armhf (1.15-1) ... Selecting previously unselected package libxshmfence1:armhf. Preparing to unpack .../022-libxshmfence1_1.3-1_armhf.deb ... Unpacking libxshmfence1:armhf (1.3-1) ... Selecting previously unselected package libegl-mesa0:armhf. Preparing to unpack .../023-libegl-mesa0_24.0.4-1_armhf.deb ... Unpacking libegl-mesa0:armhf (24.0.4-1) ... Selecting previously unselected package libegl1:armhf. Preparing to unpack .../024-libegl1_1.7.0-1_armhf.deb ... Unpacking libegl1:armhf (1.7.0-1) ... Selecting previously unselected package libgles2:armhf. Preparing to unpack .../025-libgles2_1.7.0-1_armhf.deb ... Unpacking libgles2:armhf (1.7.0-1) ... Selecting previously unselected package libglib2.0-0t64:armhf. Preparing to unpack .../026-libglib2.0-0t64_2.78.4-6_armhf.deb ... Unpacking libglib2.0-0t64:armhf (2.78.4-6) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../027-libelf1t64_0.191-1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1) ... Selecting previously unselected package libdw1t64:armhf. Preparing to unpack .../028-libdw1t64_0.191-1_armhf.deb ... Unpacking libdw1t64:armhf (0.191-1) ... Selecting previously unselected package libunwind8:armhf. Preparing to unpack .../029-libunwind8_1.6.2-3_armhf.deb ... Unpacking libunwind8:armhf (1.6.2-3) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../030-libcap2-bin_1%3a2.66-5_armhf.deb ... Unpacking libcap2-bin (1:2.66-5) ... Selecting previously unselected package libgstreamer1.0-0:armhf. Preparing to unpack .../031-libgstreamer1.0-0_1.24.1-1_armhf.deb ... Unpacking libgstreamer1.0-0:armhf (1.24.1-1) ... Selecting previously unselected package liborc-0.4-0t64:armhf. Preparing to unpack .../032-liborc-0.4-0t64_1%3a0.4.38-1_armhf.deb ... Unpacking liborc-0.4-0t64:armhf (1:0.4.38-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../033-iso-codes_4.16.0-1_all.deb ... Unpacking iso-codes (4.16.0-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:armhf. Preparing to unpack .../034-libgstreamer-plugins-base1.0-0_1.24.1-1_armhf.deb ... Unpacking libgstreamer-plugins-base1.0-0:armhf (1.24.1-1) ... Selecting previously unselected package libhyphen0:armhf. Preparing to unpack .../035-libhyphen0_2.8.8-7+b1_armhf.deb ... Unpacking libhyphen0:armhf (2.8.8-7+b1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../036-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../037-libjpeg62-turbo_1%3a2.1.5-2+b2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2+b2) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../038-libpng16-16t64_1.6.43-5_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.43-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../039-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../040-shared-mime-info_2.4-3_armhf.deb ... Unpacking shared-mime-info (2.4-3) ... Selecting previously unselected package libdouble-conversion3:armhf. Preparing to unpack .../041-libdouble-conversion3_3.3.0-1+b1_armhf.deb ... Unpacking libdouble-conversion3:armhf (3.3.0-1+b1) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../042-libpcre2-16-0_10.42-4+b1_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.42-4+b1) ... Selecting previously unselected package libqt5core5t64:armhf. Preparing to unpack .../043-libqt5core5t64_5.15.10+dfsg-7.2_armhf.deb ... Unpacking libqt5core5t64:armhf (5.15.10+dfsg-7.2) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../044-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../045-libfreetype6_2.13.2+dfsg-1+b2_armhf.deb ... Unpacking libfreetype6:armhf (2.13.2+dfsg-1+b2) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../046-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.15.0-1.1_armhf.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../049-libfontconfig1_2.15.0-1.1_armhf.deb ... Unpacking libfontconfig1:armhf (2.15.0-1.1) ... Selecting previously unselected package fontconfig. Preparing to unpack .../050-fontconfig_2.15.0-1.1_armhf.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../051-libgraphite2-3_1.3.14-2_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../052-libharfbuzz0b_8.3.0-2+b1_armhf.deb ... Unpacking libharfbuzz0b:armhf (8.3.0-2+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../053-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../054-libice6_2%3a1.0.10-1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-1) ... Selecting previously unselected package libevdev2:armhf. 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-3+b3_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.8-3+b3) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-3+b3_armhf.deb ... Unpacking python3.11 (3.11.8-3+b3) ... 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Preparing to unpack .../337-libproj25_9.4.0-1+b1_armhf.deb ... Unpacking libproj25:armhf (9.4.0-1+b1) ... Selecting previously unselected package libgeotiff5:armhf. Preparing to unpack .../338-libgeotiff5_1.7.1-5_armhf.deb ... Unpacking libgeotiff5:armhf (1.7.1-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../339-libtirpc-common_1.3.4+ds-1.2_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.2) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../340-libtirpc3t64_1.3.4+ds-1.2_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.2) ... Selecting previously unselected package libhdf4-0-alt:armhf. 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Selecting previously unselected package libnetcdf19t64:armhf. Preparing to unpack .../347-libnetcdf19t64_1%3a4.9.2-5+b1_armhf.deb ... Unpacking libnetcdf19t64:armhf (1:4.9.2-5+b1) ... Selecting previously unselected package libodbc2:armhf. Preparing to unpack .../348-libodbc2_2.3.12-1+b2_armhf.deb ... Unpacking libodbc2:armhf (2.3.12-1+b2) ... Selecting previously unselected package unixodbc-common. Preparing to unpack .../349-unixodbc-common_2.3.12-1_all.deb ... Unpacking unixodbc-common (2.3.12-1) ... Selecting previously unselected package libodbcinst2:armhf. Preparing to unpack .../350-libodbcinst2_2.3.12-1+b2_armhf.deb ... Unpacking libodbcinst2:armhf (2.3.12-1+b2) ... Selecting previously unselected package libogdi4.1:armhf. Preparing to unpack .../351-libogdi4.1_4.1.1+ds-3+b1_armhf.deb ... Unpacking libogdi4.1:armhf (4.1.1+ds-3+b1) ... Selecting previously unselected package libpoppler126t64:armhf. Preparing to unpack .../352-libpoppler126t64_22.12.0-2.2_armhf.deb ... 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Selecting previously unselected package libsharpyuv-dev:armhf. Preparing to unpack .../369-libsharpyuv-dev_1.3.2-0.4+b1_armhf.deb ... Unpacking libsharpyuv-dev:armhf (1.3.2-0.4+b1) ... Selecting previously unselected package libwebp-dev:armhf. Preparing to unpack .../370-libwebp-dev_1.3.2-0.4+b1_armhf.deb ... Unpacking libwebp-dev:armhf (1.3.2-0.4+b1) ... Selecting previously unselected package libtiffxx6:armhf. Preparing to unpack .../371-libtiffxx6_4.5.1+git230720-4_armhf.deb ... Unpacking libtiffxx6:armhf (4.5.1+git230720-4) ... Selecting previously unselected package liblerc-dev:armhf. Preparing to unpack .../372-liblerc-dev_4.0.0+ds-4+b1_armhf.deb ... Unpacking liblerc-dev:armhf (4.0.0+ds-4+b1) ... Selecting previously unselected package libtiff-dev:armhf. Preparing to unpack .../373-libtiff-dev_4.5.1+git230720-4_armhf.deb ... Unpacking libtiff-dev:armhf (4.5.1+git230720-4) ... Selecting previously unselected package libproj-dev:armhf. 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Selecting previously unselected package libtirpc-dev:armhf. Preparing to unpack .../391-libtirpc-dev_1.3.4+ds-1.2_armhf.deb ... Unpacking libtirpc-dev:armhf (1.3.4+ds-1.2) ... Selecting previously unselected package libogdi-dev. Preparing to unpack .../392-libogdi-dev_4.1.1+ds-3+b1_armhf.deb ... Unpacking libogdi-dev (4.1.1+ds-3+b1) ... Selecting previously unselected package libopenjp2-7-dev:armhf. Preparing to unpack .../393-libopenjp2-7-dev_2.5.0-2+b3_armhf.deb ... Unpacking libopenjp2-7-dev:armhf (2.5.0-2+b3) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../394-libpcre2-32-0_10.42-4+b1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.42-4+b1) ... Selecting previously unselected package libpcre2-posix3:armhf. Preparing to unpack .../395-libpcre2-posix3_10.42-4+b1_armhf.deb ... Unpacking libpcre2-posix3:armhf (10.42-4+b1) ... Selecting previously unselected package libpcre2-dev:armhf. Preparing to unpack .../396-libpcre2-dev_10.42-4+b1_armhf.deb ... Unpacking libpcre2-dev:armhf (10.42-4+b1) ... Selecting previously unselected package libpoppler-dev:armhf. Preparing to unpack .../397-libpoppler-dev_22.12.0-2.2_armhf.deb ... Unpacking libpoppler-dev:armhf (22.12.0-2.2) ... Selecting previously unselected package libpoppler-private-dev:armhf. Preparing to unpack .../398-libpoppler-private-dev_22.12.0-2.2_armhf.deb ... Unpacking libpoppler-private-dev:armhf (22.12.0-2.2) ... Selecting previously unselected package libpq-dev. Preparing to unpack .../399-libpq-dev_16.2-2+b1_armhf.deb ... Unpacking libpq-dev (16.2-2+b1) ... Selecting previously unselected package libqhull8.0:armhf. Preparing to unpack .../400-libqhull8.0_2020.2-6+b1_armhf.deb ... Unpacking libqhull8.0:armhf (2020.2-6+b1) ... Selecting previously unselected package libqhullcpp8.0:armhf. Preparing to unpack .../401-libqhullcpp8.0_2020.2-6+b1_armhf.deb ... Unpacking libqhullcpp8.0:armhf (2020.2-6+b1) ... 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Setting up libmunge2:armhf (0.5.15-4) ... Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2+b2) ... Setting up emacsen-common (3.0.5) ... Setting up qt5-qmake-bin (5.15.10+dfsg-7.2) ... Setting up libzzip-0-13t64:armhf (0.13.72+dfsg.1-1.2) ... Setting up libva2:armhf (2.20.0-2) ... Setting up libsqlite3-dev:armhf (3.45.2-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2+b2) ... Setting up libnspr4:armhf (2:4.35-1.1+b1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up libteckit0:armhf (2.5.12+ds1-1) ... Setting up htmldoc-common (1.9.18-1) ... Setting up uuid-dev:armhf (2.39.3-11) ... Setting up libpathplan4:armhf (2.42.2-9+b1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13+b2) ... Setting up libgeos-dev (3.12.1-3) ... Setting up libgles1:armhf (1.7.0-1) ... Setting up libdbus-1-3:armhf (1.14.10-4+b1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libopus0:armhf (1.4-1+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:armhf (2023.20230311.66589-9+b1) ... Setting up libproc2-0:armhf (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:armhf (3.1.5-1.1) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up libhwloc15:armhf (2.10.0-1+b1) ... Setting up libvorbis0a:armhf (1.3.7-2) ... Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:armhf (1.9.5-6+b2) ... Setting up icu-devtools (72.1-4+b1) ... Setting up liblz4-dev:armhf (1.9.4-1+b2) ... Setting up libmariadb3:armhf (1:10.11.7-3) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up unixodbc-common (2.3.12-1) ... Setting up libqhullcpp8.0:armhf (2020.2-6+b1) ... Setting up libgav1-1:armhf (0.18.0-1+b1) ... Setting up libpcsclite1:armhf (2.0.3-1) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up libsensors5:armhf (1:3.6.0-9) ... Setting up libvpx8:armhf (1.13.1-2) ... Setting up liblerc-dev:armhf (4.0.0+ds-4+b1) ... Setting up libjxl0.7:armhf (0.7.0-10.2+b3) ... Setting up libk5crypto3:armhf (1.20.1-6+b1) ... Setting up libltdl7:armhf (2.4.7-7) ... Setting up opencl-c-headers (3.0~2023.12.14-1) ... Setting up libfftw3-double3:armhf (3.3.10-1+b2) ... Setting up libglapi-mesa:armhf (24.0.4-1) ... Setting up libqhull-dev:armhf (2020.2-6+b1) ... Setting up libkpathsea6:armhf (2023.20230311.66589-9+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up libgfortran5:armhf (14-20240315-1) ... Setting up libdouble-conversion-dev:armhf (3.3.0-1+b1) ... Setting up libvulkan1:armhf (1.3.275.0-1) ... Setting up autoconf (2.71-3) ... Setting up libx265-199:armhf (3.5-2+b1) ... Setting up libwebp7:armhf (1.3.2-0.4+b1) ... Setting up libfmt9:armhf (9.1.0+ds1-2) ... Setting up liblzma-dev:armhf (5.6.1+really5.4.5-1) ... Setting up libgif7:armhf (5.2.2-1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3.1) ... Setting up libodbc2:armhf (2.3.12-1+b2) ... Setting up liburiparser1:armhf (0.9.7+dfsg-2+b1) ... Setting up libnuma1:armhf (2.0.18-1) ... Setting up libpcre2-posix3:armhf (10.42-4+b1) ... Setting up libfyba0t64:armhf (4.1.1-11) ... Setting up dwz (0.15-1+b1) ... Setting up librttopo1:armhf (1.1.0-3+b1) ... Setting up libsrt1.5-gnutls:armhf (1.5.3-1+b2) ... Setting up libdav1d7:armhf (1.4.1-1) ... Setting up libmtdev1t64:armhf (1.1.6-1.1) ... Setting up sensible-utils (0.0.22) ... Setting up libminizip1t64:armhf (1:1.3.dfsg-3.1) ... Setting up ocl-icd-libopencl1:armhf (2.3.2-1) ... Setting up libgif-dev:armhf (5.2.2-1) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up librhash0:armhf (1.4.3-3+b1) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libjson-perl (4.10000-1) ... Setting up libblosc1:armhf (1.21.5+ds-1+b1) ... Setting up libnl-3-200:armhf (3.7.0-0.3) ... Setting up openmpi-common (4.1.6-7) ... Setting up libmd4c0:armhf (0.4.8-1+b1) ... Setting up fonts-lmodern (2.005-1) ... Setting up libopenjp2-7:armhf (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up git-man (1:2.43.0-1) ... Setting up libthai-data (0.1.29-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libgts-0.7-5t64:armhf (0.7.6+darcs121130-5.2) ... Setting up sgml-base (1.31) ... Setting up libgtk2.0-common (2.24.33-4) ... Setting up cmake-data (3.28.3-1) ... Setting up libcdt5:armhf (2.42.2-9+b1) ... Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up libcgraph6:armhf (2.42.2-9+b1) ... Setting up libboost-dev:armhf (1.83.0.2+b2) ... Setting up libevent-core-2.1-7t64:armhf (2.1.12-stable-8.1+b2) ... Setting up libglu1-mesa:armhf (9.0.2-1.1) ... Setting up libssh2-1t64:armhf (1.11.0-4.1+b1) ... Setting up libopengl-dev:armhf (1.7.0-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libhunspell-1.7-0:armhf (1.7.2+really1.7.2-10+b2) ... Setting up libfido2-1:armhf (1.14.0-1+b1) ... Setting up libde265-0:armhf (1.0.15-1+b1) ... Setting up libsharpyuv-dev:armhf (1.3.2-0.4+b1) ... Setting up libkmlbase1t64:armhf (1.3.0-12) ... Setting up libgfortran-13-dev:armhf (13.2.0-23) ... Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... Setting up openssl (3.1.5-1.1) ... Setting up libwebpmux3:armhf (1.3.2-0.4+b1) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up libtiffxx6:armhf (4.5.1+git230720-4) ... Setting up libdeflate-dev:armhf (1.20-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libyuv0:armhf (0.0~git202401110.af6ac82-1) ... Setting up libjson-c5:armhf (0.17-1+b1) ... Setting up libevdev2:armhf (1.13.1+dfsg-1) ... Setting up readline-common (8.2-4) ... Setting up libicu-dev:armhf (72.1-4+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up iso-codes (4.16.0-1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b3) ... Setting up libgudev-1.0-0:armhf (238-5) ... Setting up libzvbi-common (0.2.42-2) ... Setting up qtchooser (66-2) ... Setting up libgstreamer1.0-0:armhf (1.24.1-1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libmp3lame0:armhf (3.100-6+b2) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libsz2:armhf (1.1.3-1) ... Setting up libvorbisenc2:armhf (1.3.7-2) ... Setting up libsynctex2:armhf (2023.20230311.66589-9+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libodbccr2:armhf (2.3.12-1+b2) ... Setting up gdal-plugins:armhf (3.8.4+dfsg-3+b1) ... Setting up libwacom-common (2.10.0-1) ... Setting up libbz2-dev:armhf (1.0.8-5.1) ... Setting up libxkbcommon0:armhf (1.6.0-1) ... Setting up libpotrace0:armhf (1.16-2+b1) ... Setting up libwayland-client0:armhf (1.22.0-2.1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gfortran-13-arm-linux-gnueabihf (13.2.0-23) ... Setting up python3.12-minimal (3.12.2-4+b2) ... Setting up librttopo-dev:armhf (1.1.0-3+b1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libjsoncpp-dev:armhf (1.9.5-6+b2) ... Setting up libodbcinst2:armhf (2.3.12-1+b2) ... Setting up libavif16:armhf (1.0.4-1+b2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up tcl8.6 (8.6.14+dfsg-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libkmlxsd1t64:armhf (1.3.0-12) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libarpack2t64:armhf (3.9.1-1.1+b1) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libatk1.0-0t64:armhf (2.52.0-1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libsymspg-dev:armhf (2.3.1-1+b1) ... Setting up qt5-qmake:armhf (5.15.10+dfsg-7.2) ... Setting up libpcre2-dev:armhf (10.42-4+b1) ... Setting up libzvbi0t64:armhf (0.2.42-2) ... Setting up libxcb-xinput0:armhf (1.15-1) ... Setting up libwoff1:armhf (1.0.2-2+b1) ... Setting up libice-dev:armhf (2:1.0.10-1) ... Setting up dictionaries-common (1.29.7) ... Setting up voro++-dev (0.5+revert-to-0.4.6+dfsg1-1) ... Setting up libtool (2.4.7-7) ... Setting up libblosc-dev:armhf (1.21.5+ds-1+b1) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libfftw3-bin (3.3.10-1+b2) ... Setting up libwacom9:armhf (2.10.0-1+b1) ... Setting up libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-8.1+b2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libjson-c-dev:armhf (0.17-1+b1) ... Setting up libfyba-dev:armhf (4.1.1-11) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libwebpdemux2:armhf (1.3.2-0.4+b1) ... Setting up tcl8.6-dev:armhf (8.6.14+dfsg-1) ... Setting up libedit2:armhf (3.1-20230828-1) ... Setting up libevent-openssl-2.1-7t64:armhf (2.1.12-stable-8.1+b2) ... Setting up libpng-dev:armhf (1.6.43-5) ... Setting up libcommons-parent-java (56-1) ... Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ... Setting up libaec-dev:armhf (1.1.3-1) ... Setting up libxcb-shape0:armhf (1.15-1) ... Setting up libavahi-common3:armhf (0.8-13+b2) ... Setting up libjpeg-dev:armhf (1:2.1.5-2+b2) ... Setting up libjbig-dev:armhf (2.1-6.1+b1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ... Setting up libnss3:armhf (2:3.99-1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1+b1) ... Setting up libsuperlu6:armhf (6.0.1+dfsg1-1+b1) ... Setting up libldap-2.5-0:armhf (2.5.16+dfsg-2) ... Setting up libxcb-util1:armhf (0.4.0-1+b1) ... Setting up gfortran-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up pkgconf:armhf (1.8.1-1+b2) ... Setting up libinput-bin (1.25.0-1+b1) ... Setting up libxcb-xkb1:armhf (1.15-1) ... Setting up libxcb-image0:armhf (0.4.0-2+b1) ... Setting up libtbbbind-2-5:armhf (2021.11.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up liburiparser-dev (0.9.7+dfsg-2+b1) ... Setting up libnuma-dev:armhf (2.0.18-1) ... Setting up libnl-route-3-200:armhf (3.7.0-0.3) ... Setting up libllvm16t64:armhf (1:16.0.6-24) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up libkmldom1t64:armhf (1.3.0-12) ... Setting up dh-autoreconf (20) ... Setting up libminizip-dev:armhf (1:1.3.dfsg-3.1) ... Setting up libltdl-dev:armhf (2.4.7-7) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libvorbisfile3:armhf (1.3.7-2) ... Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libxml2-dev:armhf (2.9.14+dfsg-1.3+b2) ... Setting up libwebp-dev:armhf (1.3.2-0.4+b1) ... Setting up libxcb-xinerama0:armhf (1.15-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libptexenc1:armhf (2023.20230311.66589-9+b1) ... Setting up libllvm17t64:armhf (1:17.0.6-9) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b2) ... Setting up libtiff-dev:armhf (4.5.1+git230720-4) ... Setting up libde265-dev:armhf (1.0.15-1+b1) ... Setting up libopenjp2-7-dev:armhf (2.5.0-2+b3) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up gfortran-13 (13.2.0-23) ... Setting up libdav1d-dev:armhf (1.4.1-1) ... Setting up libx265-dev:armhf (3.5-2+b1) ... Setting up shared-mime-info (2.4-3) ... Setting up opencl-clhpp-headers (3.0~2023.12.14-1) ... Setting up libxkbcommon-x11-0:armhf (1.6.0-1) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up pkg-config:armhf (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up ocl-icd-opencl-dev:armhf (2.3.2-1) ... Setting up libevent-extra-2.1-7t64:armhf (2.1.12-stable-8.1+b2) ... Setting up libmariadb-dev (1:10.11.7-3) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libgvpr2:armhf (2.42.2-9+b1) ... Setting up libdrm2:armhf (2.4.120-2) ... Setting up libnl-3-dev:armhf (3.7.0-0.3) ... Setting up libfreexl1:armhf (2.0.0-1+b2) ... Setting up libva-drm2:armhf (2.20.0-2) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up xml-core (0.19) ... Setting up tcl (8.6.14) ... Setting up libxslt1.1:armhf (1.1.35-1) ... Setting up hunspell-en-us (1:2020.12.07-2) ... Setting up libx11-6:armhf (2:1.8.7-1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-3+b2) ... Setting up libhwloc-dev:armhf (2.10.0-1+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libbluray2:armhf (1:1.3.4-1) ... Setting up libsuperlu-dev:armhf (6.0.1+dfsg1-1+b1) ... Setting up libxcomposite1:armhf (1:0.4.5-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libarchive13t64:armhf (3.7.2-1.1) ... Setting up libfftw3-dev:armhf (3.3.10-1+b2) ... Setting up unixodbc-dev:armhf (2.3.12-1+b2) ... Setting up libopenmpt0t64:armhf (0.7.3-1.1) ... Setting up libavahi-client3:armhf (0.8-13+b2) ... Setting up libarmadillo12 (1:12.6.7+dfsg-1+b1) ... Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... Setting up libssh-gcrypt-4:armhf (0.10.6-2+b1) ... Setting up libmariadb-dev-compat (1:10.11.7-3) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libinput10:armhf (1.25.0-1+b1) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up gtk-update-icon-cache (3.24.41-4) ... Setting up libx11-xcb1:armhf (2:1.8.7-1) ... Setting up libibverbs1:armhf (50.0-2+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.120-2) ... Setting up libarpack2-dev:armhf (3.9.1-1.1+b1) ... Setting up libxdamage1:armhf (1:1.1.6-1) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up libzmq5:armhf (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:armhf (3.12.2-4+b2) ... Setting up libxpm4:armhf (1:3.5.17-1+b1) ... Setting up libllvm15t64:armhf (1:15.0.7-14) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libcurl4t64:armhf (8.7.1-1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.2) ... Setting up libgbm1:armhf (24.0.4-1) ... Setting up ibverbs-providers:armhf (50.0-2+b1) ... Setting up libogdi4.1:armhf (4.1.1+ds-3+b1) ... Setting up libenchant-2-2:armhf (2.3.3-2+b2) ... Setting up python3-pip-whl (24.0+dfsg-2) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libdrm-radeon1:armhf (2.4.120-2) ... Setting up openssh-client (1:9.7p1-2+b2) ... Setting up libfreexl-dev:armhf (2.0.0-1+b2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.8-3+b3) ... Setting up python3.12 (3.12.2-4+b2) ... Setting up libpango-1.0-0:armhf (1.52.1+ds-1) ... Setting up libgl1-mesa-dri:armhf (24.0.4-1) ... Setting up libpython3.11t64:armhf (3.11.8-3+b3) ... Setting up libpq5:armhf (16.2-2+b1) ... Setting up libx11-dev:armhf (2:1.8.7-1) ... Setting up libcurl3t64-gnutls:armhf (8.7.1-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libgstreamer-plugins-base1.0-0:armhf (1.24.1-1) ... Setting up libpq-dev (16.2-2+b1) ... Setting up libtbb12:armhf (2021.11.0-2) ... Setting up libkmlengine1t64:armhf (1.3.0-12) ... Setting up libpaper-utils (1.1.29) ... Setting up libkim-api2:armhf (2.3.0-1+b1) ... Setting up libclang1-16t64 (1:16.0.6-24) ... Setting up libxerces-c3.2t64:armhf (3.2.4+debian-1.2+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libkim-api-dev (2.3.0-1+b1) ... Setting up libclang-cpp16t64 (1:16.0.6-24) ... Setting up gfortran (4:13.2.0-7) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.18.0-3) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libfreetype-dev:armhf (2.13.2+dfsg-1+b2) ... Setting up libxnvctrl0:armhf (535.171.04-1) ... Setting up libpython3.12t64:armhf (3.12.2-4+b2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libnl-route-3-dev:armhf (3.7.0-0.3) ... Setting up libpoppler126t64:armhf (22.12.0-2.2) ... Setting up libqt5core5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libegl-mesa0:armhf (24.0.4-1) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.2) ... Setting up libcfitsio10t64:armhf (4.3.1-1.1+b1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:armhf (8.7.1-1) ... Setting up libpython3.11-dev:armhf (3.11.8-3+b3) ... Setting up libxerces-c-dev:armhf (3.2.4+debian-1.2+b1) ... Setting up sphinx-common (7.2.6-6) ... Setting up libxinerama1:armhf (2:1.1.4-3) ... Setting up libxt6t64:armhf (1:1.2.1-1.2) ... Setting up qtattributionsscanner-qt5 (5.15.10-6+b1) ... Setting up libevent-dev (2.1.12-stable-8.1+b2) ... Setting up libxrandr2:armhf (2:1.5.4-1) ... Setting up libclang1-15t64 (1:15.0.7-14) ... Setting up git (1:2.43.0-1+b1) ... Setting up tcl-dev:armhf (8.6.14) ... Setting up libhdf4-0-alt:armhf (4.2.16-4+b1) ... Setting up openjdk-17-jre-headless:armhf (17.0.11~7ea-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxext-dev:armhf (2:1.3.4-1+b1) ... Setting up libvdpau1:armhf (1.5-2) ... Setting up libtheora0:armhf (1.1.1+dfsg.1-16.1+b2) ... Setting up libegl1:armhf (1.7.0-1) ... Setting up libqt5sql5t64:armhf (5.15.10+dfsg-7.2) ... Setting up cmake (3.28.3-1+b2) ... Setting up librdmacm1t64:armhf (50.0-2+b1) ... Setting up libcairo-gobject2:armhf (1.18.0-3) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libtbb-dev:armhf (2021.11.0-2) ... Setting up libkmlconvenience1t64:armhf (1.3.0-12) ... Setting up libpangoft2-1.0-0:armhf (1.52.1+ds-1) ... Setting up libhdf5-103-1t64:armhf (1.10.10+repack-3.3) ... Setting up libva-x11-2:armhf (2.20.0-2) ... Setting up libxrender-dev:armhf (1:0.9.10-1.1) ... Setting up libogdi-dev (4.1.1+ds-3+b1) ... Setting up libcups2t64:armhf (2.4.7-1.2) ... Setting up tex-gyre (20180621-6) ... Setting up libpangocairo-1.0-0:armhf (1.52.1+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up default-libmysqlclient-dev:armhf (1.1.0+b1) ... Setting up libpoppler-dev:armhf (22.12.0-2.2) ... Setting up libfabric1:armhf (1.17.0-3+b1) ... Setting up libhdf5-hl-100t64:armhf (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.8-3+b3) ... Setting up libnetcdf19t64:armhf (1:4.9.2-5+b1) ... Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libxmu6:armhf (2:1.1.3-3+b1) ... Setting up libqt5dbus5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libglx-mesa0:armhf (24.0.4-1) ... Setting up libcfitsio-dev:armhf (4.3.1-1.1+b1) ... Setting up libpython3-dev:armhf (3.11.8-1) ... Setting up libkmlregionator1t64:armhf (1.3.0-12) ... Setting up libqt5sql5-sqlite:armhf (5.15.10+dfsg-7.2) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up libglx0:armhf (1.7.0-1) ... Setting up libproj25:armhf (9.4.0-1+b1) ... Setting up libfontconfig-dev:armhf (2.15.0-1.1) ... Setting up python3.11-dev (3.11.8-3+b3) ... Setting up qdoc-qt5 (5.15.10-6+b1) ... Setting up libxtst6:armhf (2:1.2.3-1.1) ... Setting up libqt5concurrent5t64:armhf (5.15.10+dfsg-7.2) ... Setting up preview-latex-style (13.2-1) ... Setting up libtk8.6:armhf (8.6.14-1) ... Setting up libxcursor1:armhf (1:1.2.1-1) ... Setting up libpoppler-private-dev:armhf (22.12.0-2.2) ... Setting up libqt5positioning5:armhf (5.15.10+dfsg-3+b2) ... Setting up libhdf5-cpp-103-1t64:armhf (1.10.10+repack-3.3) ... Setting up libqt5network5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libhdf5-fortran-102t64:armhf (1.10.10+repack-3.3) ... Setting up libqt5xml5t64:armhf (5.15.10+dfsg-7.2) ... Setting up debhelper (13.15.3) ... Setting up libavutil58:armhf (7:6.1.1-3+b1) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:armhf (3.12.2-4+b2) ... Setting up libxaw7:armhf (2:1.0.14-1+b1) ... Setting up libqt5test5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libibverbs-dev:armhf (50.0-2+b1) ... Setting up libxss-dev:armhf (1:1.2.3-1) ... Setting up libhwloc-plugins:armhf (2.10.0-1+b1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up libgeotiff5:armhf (1.7.1-5) ... Setting up librsvg2-2:armhf (2.58.0+dfsg-1) ... Setting up python3-six (1.16.0-6) ... Setting up qtbase5-dev-tools (5.15.10+dfsg-7.2) ... Setting up python3-roman (3.3-3) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up libqt5gui5t64:armhf (5.15.10+dfsg-7.2) ... Setting up python3-packaging (23.2-1) ... Setting up libgl1:armhf (1.7.0-1) ... Setting up libtheora-dev:armhf (1.1.1+dfsg.1-16.1+b2) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up python3-enchant (3.2.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up libswresample4:armhf (7:6.1.1-3+b1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up libxt-dev:armhf (1:1.2.1-1.2) ... Setting up libqt5qml5:armhf (5.15.10+dfsg-2+b2) ... Setting up libpython3-all-dev:armhf (3.11.8-1) ... Setting up libproj-dev:armhf (9.4.0-1+b1) ... Setting up python3-idna (3.6-2) ... Setting up python3.12-dev (3.12.2-4+b2) ... Setting up libgtk2.0-0t64:armhf (2.24.33-4) ... Setting up libqt5webchannel5:armhf (5.15.10-2+b2) ... Setting up libpmix2t64:armhf (5.0.1-4.1) ... Setting up libglew2.2:armhf (2.2.0-4+b1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up libopenmpi3t64:armhf (4.1.6-7+b1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up libavcodec60:armhf (7:6.1.1-3+b1) ... Setting up texlive-binaries (2023.20230311.66589-9+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libglx-dev:armhf (1.7.0-1) ... Setting up libqt5sensors5:armhf (5.15.10-2+b2) ... Setting up python3-build (1.1.1-1) ... Setting up libhdf5-hl-cpp-100t64:armhf (1.10.10+repack-3.3) ... Setting up python3-lib2to3 (3.12.2-3) ... Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libfltk1.3t64:armhf (1.3.8-6.1) ... Setting up libgl-dev:armhf (1.7.0-1) ... Setting up libpmix-dev:armhf (5.0.1-4.1) ... Setting up openmpi-bin (4.1.6-7+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libswscale7:armhf (7:6.1.1-3+b1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up libxft-dev:armhf (2.3.6-1+b1) ... Setting up libspatialite8t64:armhf (5.1.0-3+b1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.2-3) ... python3.12: can't get files for byte-compilation Setting up libavutil-dev:armhf (7:6.1.1-3+b1) ... Setting up python3-more-itertools (10.2.0-1) ... Setting up libkml-dev:armhf (1.3.0-12) ... Setting up tk8.6 (8.6.14-1) ... Setting up libfltk-images1.3t64:armhf (1.3.8-6.1) ... Setting up libvulkan-dev:armhf (1.3.275.0-1) ... Setting up libqt5qmlmodels5:armhf (5.15.10+dfsg-2+b2) ... Setting up libfontconfig1-dev:armhf (2.15.0-1.1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up libegl-dev:armhf (1.7.0-1) ... Setting up python3-babel (2.10.3-3) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libqt5widgets5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libgeotiff-dev:armhf (1.7.1-5) ... Setting up libswresample-dev:armhf (7:6.1.1-3+b1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-alabaster (0.7.12-1) ... Setting up libavcodec-dev:armhf (7:6.1.1-3+b1) ... Setting up mpi-default-bin (1.15) ... Setting up libhdf5-hl-fortran-100t64:armhf (1.10.10+repack-3.3) ... Setting up python3-all (3.11.8-1) ... Setting up libavformat60:armhf (7:6.1.1-3+b1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-mpi4py (3.1.5-5+b1) ... Setting up libqt5help5:armhf (5.15.10-6+b1) ... Setting up libhdf5-openmpi-103-1t64:armhf (1.10.10+repack-3.3) ... Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... Setting up libqt5qmlworkerscript5:armhf (5.15.10+dfsg-2+b2) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up python3.11-venv (3.11.8-3+b3) ... Setting up libswscale-dev:armhf (7:6.1.1-3+b1) ... Setting up python3-dev (3.11.8-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:armhf (9.0.2-1.1) ... Setting up libnetcdf-dev (1:4.9.2-5+b1) ... Setting up libspatialite-dev:armhf (5.1.0-3+b1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up tk8.6-dev:armhf (8.6.14-1) ... Setting up libhdf5-openmpi-fortran-102t64:armhf (1.10.10+repack-3.3) ... Setting up libhdf5-openmpi-cpp-103-1t64:armhf (1.10.10+repack-3.3) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up libvtk9.1t64:armhf (9.1.0+really9.1.0+dfsg2-7.1) ... Setting up libqt5opengl5t64:armhf (5.15.10+dfsg-7.2) ... Setting up libopenmpi-dev:armhf (4.1.6-7+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up libgles-dev:armhf (1.7.0-1) ... Setting up htmldoc (1.9.18-1) ... Setting up tk (8.6.14) ... Setting up libqt5quick5:armhf (5.15.10+dfsg-2+b2) ... Setting up libqt5printsupport5t64:armhf (5.15.10+dfsg-7.2) ... Setting up dh-python (6.20240310) ... Setting up python3-all-dev (3.11.8-1) ... Setting up libqt5quickshapes5:armhf (5.15.10+dfsg-2+b2) ... Setting up libqt5quicktest5:armhf (5.15.10+dfsg-2+b2) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up libqt5designer5:armhf (5.15.10-6+b1) ... Setting up pybuild-plugin-pyproject (6.20240310) ... Setting up qtdeclarative5-dev-tools (5.15.10+dfsg-2+b2) ... Setting up latexmk (1:4.83-1) ... Setting up libglvnd-dev:armhf (1.7.0-1) ... Setting up qhelpgenerator-qt5 (5.15.10-6+b1) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up libavformat-dev:armhf (7:6.1.1-3+b1) ... Setting up libhdf5-openmpi-hl-100t64:armhf (1.10.10+repack-3.3) ... Setting up libqt5webkit5:armhf (5.212.0~alpha4-33+b3) ... Setting up libqt5designercomponents5:armhf (5.15.10-6+b1) ... Setting up libgl2ps-dev (1.4.2+dfsg1-2) ... Setting up libhdf5-openmpi-hl-fortran-100t64:armhf (1.10.10+repack-3.3) ... Setting up qt5-qmltooling-plugins:armhf (5.15.10+dfsg-2+b2) ... Setting up libqt5quickwidgets5:armhf (5.15.10+dfsg-2+b2) ... Setting up libarmadillo-dev (1:12.6.7+dfsg-1+b1) ... Setting up libglew-dev:armhf (2.2.0-4+b1) ... Setting up tk-dev:armhf (8.6.14) ... Setting up python3-venv (3.11.8-1) ... Setting up libhdf4-alt-dev (4.2.16-4+b1) ... Setting up libvtk9.1t64-qt:armhf (9.1.0+really9.1.0+dfsg2-7.1) ... Setting up libvtk9-java (9.1.0+really9.1.0+dfsg2-7.1) ... Setting up vtk9 (9.1.0+really9.1.0+dfsg2-7.1) ... Setting up qtbase5-dev:armhf (5.15.10+dfsg-7.2) ... Setting up qt5-assistant (5.15.10-6+b1) ... Setting up qttools5-dev-tools (5.15.10-6+b1) ... Setting up mpi-default-dev (1.15) ... Setting up libgl1-mesa-dev:armhf (24.0.4-1) ... Setting up libhdf5-openmpi-hl-cpp-100t64:armhf (1.10.10+repack-3.3) ... Setting up libqt5quickparticles5:armhf (5.15.10+dfsg-2+b2) ... Setting up libhdf5-openmpi-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-mpi.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3-vtk9 (9.1.0+really9.1.0+dfsg2-7.1) ... /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' patn = re.compile (" \S") Setting up libqt5opengl5-dev:armhf (5.15.10+dfsg-7.2) ... Setting up libhdf5-mpi-dev (1.10.10+repack-3.3) ... Setting up qttools5-dev:armhf (5.15.10-6+b1) ... Setting up qtdeclarative5-dev:armhf (5.15.10+dfsg-2+b2) ... Setting up qttools5-private-dev:armhf (5.15.10-6+b1) ... Setting up libqt5webkit5-dev:armhf (5.212.0~alpha4-33+b3) ... Setting up libheif-plugin-dav1d:armhf (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:armhf (1.17.6-1+b2) ... Setting up libheif1:armhf (1.17.6-1+b2) ... Setting up libheif-dev:armhf (1.17.6-1+b2) ... Setting up libgdal34t64:armhf (3.8.4+dfsg-3+b1) ... Setting up libgd3:armhf (2.3.3-9+b2) ... Setting up libgvc6 (2.42.2-9+b1) ... Setting up libgdal-dev (3.8.4+dfsg-3+b1) ... Setting up graphviz (2.42.2-9+b1) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:armhf (17.0.11~7ea-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:armhf (17.0.11~7ea-1) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:armhf (17.0.11~7ea-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk-headless (2:1.17-75) ... Setting up default-jdk (2:1.17-75) ... Setting up libvtk9-dev (9.1.0+really9.1.0+dfsg2-7.1) ... Setting up libvtk9-qt-dev:armhf (9.1.0+really9.1.0+dfsg2-7.1) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-sphinxcontrib.spelling (7.7.0-1) ... Setting up python3-breathe (4.35.0-3) ... Setting up python3-sphinxcontrib.jquery (4.1-5) ... Setting up python3-sphinx-tabs (3.4.4-1) ... Processing triggers for dictionaries-common (1.29.7) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/25750/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/25750/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-1.1_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 20240207+dfsg-1.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lukas Märdian dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build dh_auto_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' rm -rf /build/reproducible-path/lammps-20240207+dfsg/debian/build rm -rf .pybuild rm -rf python/build rm -rf python/lammps.egg-info rm -f python/examples/log.lammps if [ -d doc/html.orig ]; then \ rm -rf doc/html; \ mv doc/html.orig doc/html; \ fi rm -rf doc/docenv doc/doctrees doc/utils/sphinx-config/conf.py rm -rf doc/doxygen/xml doc/doxygen-warn.log doc/doxygen/Doxyfile make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_autoreconf_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_clean -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules build dh build --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build dh_update_autotools_config -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_autoreconf -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_configure -- \ -DBUILD_SHARED_LIBS=ON \ -DCMAKE_SKIP_INSTALL_RPATH=TRUE \ -DPKG_ASPHERE=ON \ -DPKG_ATC=ON \ -DPKG_AWPMD=ON \ -DPKG_BOCS=ON \ -DPKG_BODY=ON \ -DPKG_CG-DNA=ON \ -DPKG_CG-SPICA=ON \ -DPKG_CLASS2=ON \ -DPKG_COLLOID=ON \ -DPKG_COMPRESS=ON \ -DPKG_CORESHELL=ON \ -DPKG_EXTRA-PAIR=ON \ -DPKG_DIELECTRIC=ON \ -DPKG_DIFFRACTION=ON \ -DPKG_DIPOLE=ON \ -DPKG_DPD-BASIC=ON \ -DPKG_DRUDE=ON \ -DPKG_EFF=ON \ -DPKG_ELECTRODE=ON \ -DUSE_INTERNAL_LINALG=no \ -DPKG_FEP=ON \ -DPKG_GPU=OFF \ -DPKG_GRANULAR=ON \ -DPKG_H5MD=ON \ -DPKG_KIM=ON \ -DPKG_KSPACE=ON \ -DPKG_LATBOLTZ=ON \ -DPKG_MANIFOLD=ON \ -DPKG_MANYBODY=ON \ -DPKG_MC=ON \ -DPKG_MEAM=ON \ -DPKG_MGPT=ON \ -DPKG_MISC=ON \ -DPKG_MOFFF=ON \ -DPKG_MOLFILE=ON \ -DPKG_MPIIO=ON \ -DPKG_MOLECULE=ON \ -DPKG_NETCDF=ON \ -DPKG_OPENMP==ON \ -DPKG_OPT=ON \ -DPKG_ORIENT=ON \ -DPKG_PERI=ON \ -DPKG_PHONON=ON \ -DPKG_POEMS=ON \ -DPKG_PYTHON=ON \ -DPKG_QEQ=ON \ -DPKG_QTB=ON \ -DPKG_REAXFF=OFF \ -DPKG_REPLICA=ON \ -DPKG_RIGID=ON \ -DPKG_SHOCK=ON \ -DPKG_SMTBQ=ON \ -DPKG_SNAP=ON \ -DPKG_SPH=ON \ -DPKG_SRD=ON \ -DPKG_TALLY=ON \ -DPKG_UEF=ON \ -DPKG_VTK=ON \ -DPKG_VORONOI=ON cd debian/build && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DBUILD_SHARED_LIBS=ON -DCMAKE_SKIP_INSTALL_RPATH=TRUE -DPKG_ASPHERE=ON -DPKG_ATC=ON -DPKG_AWPMD=ON -DPKG_BOCS=ON -DPKG_BODY=ON -DPKG_CG-DNA=ON -DPKG_CG-SPICA=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON -DPKG_CORESHELL=ON -DPKG_EXTRA-PAIR=ON -DPKG_DIELECTRIC=ON -DPKG_DIFFRACTION=ON -DPKG_DIPOLE=ON -DPKG_DPD-BASIC=ON -DPKG_DRUDE=ON -DPKG_EFF=ON -DPKG_ELECTRODE=ON -DUSE_INTERNAL_LINALG=no -DPKG_FEP=ON -DPKG_GPU=OFF -DPKG_GRANULAR=ON -DPKG_H5MD=ON -DPKG_KIM=ON -DPKG_KSPACE=ON -DPKG_LATBOLTZ=ON -DPKG_MANIFOLD=ON -DPKG_MANYBODY=ON -DPKG_MC=ON -DPKG_MEAM=ON -DPKG_MGPT=ON -DPKG_MISC=ON -DPKG_MOFFF=ON -DPKG_MOLFILE=ON -DPKG_MPIIO=ON -DPKG_MOLECULE=ON -DPKG_NETCDF=ON -DPKG_OPENMP==ON -DPKG_OPT=ON -DPKG_ORIENT=ON -DPKG_PERI=ON -DPKG_PHONON=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_QTB=ON -DPKG_REAXFF=OFF -DPKG_REPLICA=ON -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SMTBQ=ON -DPKG_SNAP=ON -DPKG_SPH=ON -DPKG_SRD=ON -DPKG_TALLY=ON -DPKG_UEF=ON -DPKG_VTK=ON -DPKG_VORONOI=ON ../../cmake -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Git: /usr/bin/git (found version "2.43.0") -- Running check for auto-generated files from make-based build system -- Found MPI_CXX: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Looking for C++ include omp.h -- Looking for C++ include omp.h - found -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- The C compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/arm-linux-gnueabihf/libblas.so -- Looking for cheev_ -- Looking for cheev_ - not found -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/lib/arm-linux-gnueabihf/liblapack.so;/usr/lib/arm-linux-gnueabihf/libblas.so -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62") -- Found PNG: /usr/lib/arm-linux-gnueabihf/libpng.so (found version "1.6.43") -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3") -- Found GZIP: /usr/bin/gzip -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.10 -- Found FFTW3: /usr/lib/arm-linux-gnueabihf/libfftw3.so -- Found Python: /usr/bin/python3 (found version "3.11.8") found components: Interpreter -- Found Python: /usr/bin/python3 (found version "3.11.8") found components: Interpreter Development Development.Module Development.Embed -- Found VORO: /usr/lib/arm-linux-gnueabihf/libvoro++.so -- Found NetCDF: /usr/lib/arm-linux-gnueabihf/libnetcdf.so -- Trying to find PNetCDF using LD_LIBRARY_PATH (we're desperate)... -- Could NOT find PNetCDF (missing: PNETCDF_LIBRARIES PNETCDF_INCLUDES) -- Found GLEW: /usr/lib/arm-linux-gnueabihf/libGLEW.so -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so found components: OpenGL GLX -- Found Python3: /usr/bin/python3 (found suitable version "3.11.8", minimum required is "3.11") found components: Interpreter Development.Module Development.Embed -- Found MPI_C: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.10") found components: C HL -- Found NetCDF: /usr/include (found version "4.9.2") -- Found OGG: /usr/lib/arm-linux-gnueabihf/libogg.so -- Found THEORA: /usr/lib/arm-linux-gnueabihf/libtheora.so -- Found JsonCpp: /usr/lib/arm-linux-gnueabihf/libjsoncpp.so (found suitable version "1.9.5", minimum required is "0.7.0") -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so (found version "2.9.14") -- Found GL2PS: /usr/lib/arm-linux-gnueabihf/libgl2ps.so (found suitable version "1.4.2", minimum required is "1.4.2") -- Found SQLite3: /usr/include (found version "3.45.2") -- Found LibPROJ: /usr/lib/arm-linux-gnueabihf/libproj.so (found version "9.4.0") -- Found Eigen3: /usr/include/eigen3 (found version "3.4.0") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found EXPAT: /usr/lib/arm-linux-gnueabihf/libexpat.so (found version "2.6.2") -- Found double-conversion: /usr/lib/arm-linux-gnueabihf/libdouble-conversion.so -- Found LZ4: /usr/lib/arm-linux-gnueabihf/liblz4.so (found version "1.9.4") -- Found LZMA: /usr/lib/arm-linux-gnueabihf/liblzma.so (found version "5.4.5") -- Found TIFF: /usr/lib/arm-linux-gnueabihf/libtiff.so (found version "4.5.1") -- Found Freetype: /usr/lib/arm-linux-gnueabihf/libfreetype.so (found version "2.13.2") -- Found utf8cpp: /usr/include/utf8cpp -- Found CURL: /usr/lib/arm-linux-gnueabihf/libcurl.so (found version "8.7.1") -- Found KIM-API: /usr/lib/arm-linux-gnueabihf/libkim-api.so.2.3.0 -- Checking for module 'libzstd>=1.4' -- Found libzstd, version 1.5.5 -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.10") -- Generating style headers... -- Generating package headers... -- Generating lmpinstalledpkgs.h... -- Found Python: /usr/bin/python3 (found version "3.11.8") found components: Interpreter -- Found Python3: /usr/bin/python3 (found version "3.11.8") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is at least version "8.0") -- The following tools and libraries have been found and configured: * Git * OpenMP * LAPACK * BLAS * FFTW3 * VORO * Qt5Core (required version >= 5.15.10) * Qt5Gui (required version >= 5.15.10) * GLEW * OpenGL * MPI * NetCDF * THEORA * OGG * JsonCpp (required version >= 0.7.0) * LibXml2 * GL2PS (required version >= 1.4.2) * PNG * SQLite3 * Qt5OpenGL * Qt5Widgets * Qt5 (required version >= 5.15) * LibPROJ * Eigen3 * X11 * EXPAT * double-conversion * LZ4 * LZMA * JPEG * TIFF * Freetype * TBB * Threads * utf8cpp * VTK * CURL * KIM-API (required version >= 2.2.0) * ZLIB * HDF5 * Python * Python3 -- <<< Build configuration >>> LAMMPS Version: 20240207 Operating System: Linux Debian CMake Version: 3.28.3 Build type: None Install path: /usr Generator: Unix Makefiles using /usr/bin/gmake -- Enabled packages: ASPHERE;ATC;AWPMD;BOCS;BODY;CG-DNA;CG-SPICA;CLASS2;COLLOID;COMPRESS;CORESHELL;DIELECTRIC;DIFFRACTION;DIPOLE;DPD-BASIC;DRUDE;EFF;ELECTRODE;EXTRA-PAIR;FEP;GRANULAR;H5MD;KIM;KSPACE;LATBOLTZ;MANIFOLD;MANYBODY;MC;MEAM;MGPT;MISC;MOFFF;MOLECULE;MOLFILE;NETCDF;OPENMP;OPT;ORIENT;PERI;PHONON;POEMS;PYTHON;QEQ;QTB;REPLICA;RIGID;SHOCK;SMTBQ;SPH;SRD;TALLY;UEF;VORONOI;VTK -- <<< Compilers and Flags: >>> -- C++ Compiler: /usr/bin/c++ Type: GNU Version: 13.2.0 C++ Flags: -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=4;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LMP_PYTHON;LMP_HAS_NETCDF;NC_64BIT_DATA=0x0020;LAMMPS_VTK;LMP_KIM_CURL;LAMMPS_ZSTD;LMP_OPENMP -- C compiler: /usr/bin/cc Type: GNU Version: 13.2.0 C Flags: -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -- <<< Linker flags: >>> -- Executable name: lmp -- Executable linker flags: -Wl,-z,relro -- Shared library flags: -Wl,-z,relro -- <<< MPI flags >>> -- MPI_defines: MPICH_SKIP_MPICXX;OMPI_SKIP_MPICXX;_MPICC_H -- MPI includes: /usr/lib/arm-linux-gnueabihf/openmpi/include;/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -- MPI libraries: /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so;/usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so; -- <<< FFT settings >>> -- Primary FFT lib: FFTW3 -- Using double precision FFTs -- Using threaded FFTs -- Using builtin distributed FFT algorithms -- Configuring done (19.1s) -- Generating done (0.7s) -- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build cd debian/build && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles /build/reproducible-path/lammps-20240207+dfsg/debian/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_format.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/poems.dir/DependInfo.cmake "--color=" make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/atc.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Generating includes/lammps/fmt/format.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fmt/format.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fmt/format.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build [ 0%] Building CXX object CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp [ 0%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o.d -o 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Building C object CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o /usr/bin/cc -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -MF CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o.d -o CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c [ 0%] Linking C static library liblammps_h5md.a /usr/bin/cmake -P 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"--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake -- Git Directory: /build/reproducible-path/lammps-20240207+dfsg/.git -- Generating lmpgitversion.h... make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Built target gitversion make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/angle.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Building CXX object CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp [ 0%] Generating includes/lammps/angle.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/angle.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/angle.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Built target angle.h make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/atom.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Generating includes/lammps/atom.h /usr/bin/cmake -E copy_if_different 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-E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/bond.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/bond.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Built target bond.h make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/citeme.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f 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/build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/error.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/error.h.dir/build.make CMakeFiles/error.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Generating includes/lammps/error.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/error.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/error.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 0%] Built target error.h make -f CMakeFiles/exceptions.h.dir/build.make CMakeFiles/exceptions.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/exceptions.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/exceptions.h.dir/build.make CMakeFiles/exceptions.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Generating includes/lammps/exceptions.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/exceptions.h 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Generating includes/lammps/fix.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/fix.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fix.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Built target fix.h make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/force.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/force.h.dir/build.make CMakeFiles/force.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Generating includes/lammps/force.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/force.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/force.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Built target force.h make -f CMakeFiles/group.h.dir/build.make CMakeFiles/group.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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/build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/improper.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/improper.h.dir/build.make CMakeFiles/improper.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Generating includes/lammps/improper.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/improper.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/improper.h make[3]: Leaving directory 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/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/input.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/input.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 1%] Built target input.h make -f CMakeFiles/info.h.dir/build.make CMakeFiles/info.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/info.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f 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CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatmap.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatmap.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatmap.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatmap.cpp make -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/kspace.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/kspace.h.dir/build.make CMakeFiles/kspace.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/kspace.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/kspace.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/kspace.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Built target kspace.h make -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lammps.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/lammps.h.dir/build.make CMakeFiles/lammps.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/lammps.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lammps.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Built target lammps.h make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lattice.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/lattice.h.dir/build.make CMakeFiles/lattice.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/lattice.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Built target lattice.h make -f 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/build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/memory.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/memory.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/memory.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/memory.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Built target memory.h make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/modify.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/modify.h.dir/build.make CMakeFiles/modify.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/modify.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/modify.h 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directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Generating includes/lammps/neighbor.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neighbor.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neighbor.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp [ 2%] Built target neighbor.h make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/neigh_list.h.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/neigh_list.h.dir/build.make CMakeFiles/neigh_list.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 3%] Generating includes/lammps/neigh_list.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/neigh_list.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/neigh_list.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 3%] Built target neigh_list.h make -f CMakeFiles/output.h.dir/build.make CMakeFiles/output.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake 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/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat3x3.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/mat4x4.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 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Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp [ 6%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 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CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/revolutejoint.cpp [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/rigidbody.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:151, from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.h:65, from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h: In member function 'void WavePacket::int2phys_der(d_it, dfdx_it, dfdp_it, dfdw_it, dfdpw_it, double) const [with operation = std::minus; d_it = __gnu_cxx::__normal_iterator >; dfdx_it = double*; dfdp_it = double*; dfdw_it = double*; dfdpw_it = double*]': /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h:179:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 179 | void int2phys_der(d_it dfdi_,dfdx_it dfdx, dfdp_it dfdp, dfdw_it dfdw, dfdpw_it dfdpw, double h_p=h_plank) const { | ^~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp: In member function 'void AWPMD_split::get_el_forces(int, Vector_3P, Vector_3P, double*, double*, Vector_2P)': /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:336:35: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 336 | wk.int2phys_der< minus >(E_der[s1].begin()+indw1,(double *)&fe_x[iv1+k1],(double *)&fe_p[iv1+k1],&fe_w[iv1+k1],&fe_pw[iv1+k1], 1./one_h); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/rowmatrix.cpp [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/solver.cpp [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/sphericaljoint.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:145: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/system.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect4.cpp [ 8%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp [ 8%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o /usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/virtualcolmatrix.cpp [ 8%] Building CXX object 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[with _Args = {WavePacket}; _Tp = WavePacket; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = WavePacket; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:41:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Vector_Nt; _Alloc = std::allocator >]', inlined from 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:42:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'int AWPMD_split::add_split(Vector_3&, Vector_3&, double&, double&, Vector_2&, double, double, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp:43:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 8%] Linking CXX static library liblammps_awpmd.a /usr/bin/cmake -P CMakeFiles/awpmd.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/awpmd.dir/link.txt --verbose=1 /usr/bin/ar qc liblammps_awpmd.a "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.cpp.o" "CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.cpp.o" /usr/bin/ranlib liblammps_awpmd.a make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [ 8%] Built target awpmd [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferKernel.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::add(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:480:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TransferPartitionOfUnity.cpp:2: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/BodyForce.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'bool ATC::CBLattice::_CheckUnitCell(char, char, char, ATC::AtomCluster&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:198:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC::CBLattice::atom_cluster(const ATC_matrix::MATRIX&, double, ATC::AtomCluster&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:108:31: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp In file included from /usr/include/c++/13/set:62, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:1: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:6: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'T& ATC_matrix::SparseVector::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'T& ATC_matrix::SparseVector::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15, inlined from 'T& ATC_matrix::SparseVector::operator[](ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:132:17: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'virtual void ATC::ChargeRegulatorMethodEffectiveCharge::initialize()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:631:33: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:1: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityLinear::ElectronChargeDensityLinear(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:49:31: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:70:43: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:74:36: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityExponential::ElectronChargeDensityExponential(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:78:41: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:104:32: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:109:41: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:113:39: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:118:43: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronChargeDensityFermiDirac::ElectronChargeDensityFermiDirac(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp:123:39: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'T& ATC_matrix::SparseVector::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15, inlined from 'void ATC::ChargeRegulatorMethod::set_greens_functions()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:237:29: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:681:47: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'T& ATC_matrix::SparseVector::operator()(ATC_matrix::INDEX, ATC_matrix::INDEX) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:120:15, inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:708:37: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void ATC_matrix::SparseVector::add_scaled(ATC_matrix::SparseVector&, const T&) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseVector-inl.h:149:9, inlined from 'void ATC::ChargeRegulatorMethodEffectiveCharge::apply_local_forces()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp:714:40: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp:2: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.h:4: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronFluxLinear::ElectronFluxLinear(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:39:37: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronFluxLinear::ElectronFluxLinear(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:43:40: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronFluxThermopower::ElectronFluxThermopower(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:69:37: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::__cxx11::basic_string; _Tp = double; _Compare = std::less >; _Alloc = std::allocator, double> >]', inlined from 'ATC::ElectronFluxThermopower::ElectronFluxThermopower(std::fstream&, std::map, double>&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:73:39: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronPhononExchange.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelDriftDiffusion.h:6: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:4: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:4: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2657:25, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2659:23, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2664:25, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2666:23, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2671:25, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2673:23, inlined from 'virtual void ATC::FE_Rectangular3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2626:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2938:25, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2940:23, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2945:25, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2947:23, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2952:25, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2954:23, inlined from 'virtual void ATC::FE_Uniform3DMesh::partition_mesh()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2910:8: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Function.cpp [ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp:1: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp In file included from /usr/include/c++/13/string:51, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:1: /usr/include/c++/13/bits/stl_algobase.h: In function '_RandomAccessIterator std::__find_if(_RandomAccessIterator, _RandomAccessIterator, _Predicate, random_access_iterator_tag) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]': /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2064 | __find_if(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:2064:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Node; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Node, Node)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:47:7: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(Node, Node)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:47:7: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]', inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator >; _Tp = Node]' at /usr/include/c++/13/bits/stl_algo.h:3897:28, inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:70:17: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Node; _Alloc = std::allocator]', inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:71:29: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function '_Iterator std::__find_if(_Iterator, _Iterator, _Predicate) [with _Iterator = __gnu_cxx::__normal_iterator >; _Predicate = __gnu_cxx::__ops::_Iter_equals_val]', inlined from '_IIter std::find(_IIter, _IIter, const _Tp&) [with _IIter = __gnu_cxx::__normal_iterator >; _Tp = Node]' at /usr/include/c++/13/bits/stl_algo.h:3897:28, inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:76:17: /usr/include/c++/13/bits/stl_algobase.h:2117:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 2117 | return __find_if(__first, __last, __pred, | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2118 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Node; _Alloc = std::allocator]', inlined from 'KD_Tree::KD_Tree(std::vector*, std::vector > >*, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:77:30: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const ATC_matrix::DENS_MAT*, int, const ATC_matrix::Array2D&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:11:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Node; _Alloc = std::allocator]', inlined from 'static KD_Tree* KD_Tree::create_KD_tree(int, int, const ATC_matrix::DENS_MAT*, int, const ATC_matrix::Array2D&)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KD_Tree.cpp:19:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KernelFunction.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:80:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:82:20: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:90:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:91:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:92:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual bool ATC::GhostManager::modify(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:103:20: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 85 | __move_median_to_first(_Iterator __result,_Iterator __a, _Iterator __b, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:85:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 In function '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]', inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]' at /usr/include/c++/13/bits/stl_algo.h:1931:38: /usr/include/c++/13/bits/stl_algo.h:1897:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1897 | std::__move_median_to_first(__first, __first + 1, __mid, __last - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1898 | __comp); | ~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1897:34: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]': /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:5: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(pair, pair)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:580:14: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, pair)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = bool (*)(pair, pair)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'int ATC::GhostModifierDampedHarmonicLayers::find_layers()' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/GhostManager.cpp:580:14: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/../../src/lammps.h:20, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:14: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MPI_Wrappers.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Kinetostat.cpp:1: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Material.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/NonLinearSolver.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp:1: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void ATC::OutputManager::write_data(double, ATC::OUTPUT_LIST*, const int*)' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/OutputManager.cpp:408:25: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/../../src/lammps.h:20, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:14, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerPairQuantity.cpp:1: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PolynomialSolver.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PrescribedDataManager.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:5: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:7: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Quadrature.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SpeciesTimeIntegrator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/../../src/lammps.h:20, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:14: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Stress.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array2D.h:9, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SchrodingerSolver.cpp:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void ATC_matrix::SparseMatrix::set(ATC_matrix::INDEX, ATC_matrix::INDEX, T) [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:462:17: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.h:3, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/DenseMatrix.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.h:4, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.h:5, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp:2: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronContinuity.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronTemperature.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMassDiffusion.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationElectronMomentum.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:8: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {ATC_matrix::TRI_COORD}; _Tp = ATC_matrix::TRI_COORD; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Utility.h:15, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixDef.h:23, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Array.h:10, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:14: /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1792:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1792 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = ATC_matrix::TRI_COORD; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const ATC_matrix::TRI_COORD&)>]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Compare = bool (*)(const ATC_matrix::TRI_COORD&, const ATC_matrix::TRI_COORD&)]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'ATC_matrix::INDEX ATC_matrix::SparseMatrix::CountUniqueTriplets() [with T = double]' at /build/reproducible-path/lammps-20240207+dfsg/lib/atc/SparseMatrix-inl.h:361:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPoisson.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/fix_deform.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/fix_deform.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/fix_deform.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/fix_deform.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/fix.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/fix_bond_history.h:23, from /build/reproducible-path/lammps-20240207+dfsg/src/fix_bond_history.cpp:14: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void LAMMPS_NS::FixBondHistory::cache_history(int, int)' at /build/reproducible-path/lammps-20240207+dfsg/src/fix_bond_history.cpp:336:61: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/fix_deposit.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG 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-I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polygon.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:151, from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:34: /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h: In member function 'void WavePacket::int2phys_der(d_it, dfdx_it, dfdp_it, dfdw_it, dfdpw_it, double) const [with operation = eq_minus_second; d_it = __gnu_cxx::__normal_iterator >; dfdx_it = double*; dfdp_it = double*; dfdw_it = double*; dfdpw_it = double*]': /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include/wavepacket.h:179:8: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 179 | void int2phys_der(d_it dfdi_,dfdx_it dfdx, dfdp_it dfdp, dfdw_it dfdw, dfdpw_it dfdpw, double h_p=h_plank) const { | ^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/pair.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.h:26, from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Vector_Nt&}; _Tp = Vector_Nt; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'int AWPMD::add_ion(double, const Vector_3&, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:577:17, inlined from 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)' at /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:232:28: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Vector_Nt; _Alloc = std::allocator >]', inlined from 'int AWPMD::add_ion(double, const Vector_3&, int)' at /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd.h:578:17, inlined from 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)' at /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:232:28: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:35: In member function 'void AWPMD_split::get_wp_force(int, int, Vector_3P, Vector_3P, double*, double*, Vector_2P)', inlined from 'virtual void LAMMPS_NS::PairAWPMDCut::compute(int, int)' at /build/reproducible-path/lammps-20240207+dfsg/src/AWPMD/pair_awpmd_cut.cpp:284:25: /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact/TCP/wpmd_split.h:196:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 196 | wk.int2phys_der< eq_minus_second >(E_der[s].begin()+indw1,(double *)fe_x,(double *)fe_p,fe_w,fe_pw,1./one_h); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/BODY/body_rounded_polyhedron.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_dipole.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_dipole.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_dipole.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_dipole.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/boundary_correction.h:21, from /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_2d.h:21, from /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_2d.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void LAMMPS_NS::Slab2d::vector_corr(double*, int, int, bool)' at /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_2d.cpp:97:24: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void LAMMPS_NS::Slab2d::vector_corr(double*, int, int, bool)' at /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/slab_2d.cpp:98:24: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/wire_dipole.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC 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/usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_beck.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_beck.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_beck.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_beck.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/fix.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/fix_electrode_conp.h:29, from /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/fix_electrode_conp.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'LAMMPS_NS::FixElectrodeConp::FixElectrodeConp(LAMMPS_NS::LAMMPS*, int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/fix_electrode_conp.cpp:135:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'LAMMPS_NS::FixElectrodeConp::FixElectrodeConp(LAMMPS_NS::LAMMPS*, int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/fix_electrode_conp.cpp:140:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_born_coul_dsf.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD 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-I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF 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-I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void LAMMPS_NS::FixElectrodeConp::read_from_file(const std::string&, double**, const std::string&)' at /build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE/fix_electrode_conp.cpp:1277:58: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR/pair_cosine_squared.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:61: /usr/include/c++/13/bits/stl_tree.h: In function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = LAMMPS_NS::kim_units::units; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = LAMMPS_NS::kim_units::units; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_temperature_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1048:22: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_temperature_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1049:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_mass_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:642:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_distance_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:700:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_time_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:745:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_energy_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:819:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_velocity_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:892:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_dipole_spin.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_force_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:965:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_torque_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1038:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/ewald_disp.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_pressure_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1107:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_viscosity_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1152:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fft3d_wrap.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1164:24: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1165:28: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1170:24: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1171:67: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1174:40: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1175:63: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1176:28: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1181:28: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1184:32: /usr/include/c++/13/bits/stl_map.h:532:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 532 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_charge_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1186:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_dipole_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1244:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_efield_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1302:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = LAMMPS_NS::kim_units::units; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'double LAMMPS_NS::kim_units::get_density_conversion_factor(units, units)' at /build/reproducible-path/lammps-20240207+dfsg/src/KIM/kim_units.cpp:1347:43: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/fix_tune_kspace.cpp [ 61%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE/msm.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC 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-I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_gw_zbl.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_gw_zbl.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_gw_zbl.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_gw_zbl.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.h:25, from /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, LAMMPS_NS::EIMPotentialFileReader::ElementData>; _KeyOfValue = std::_Select1st, LAMMPS_NS::EIMPotentialFileReader::ElementData> >; _Compare = std::less >; _Alloc = std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less >, std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = LAMMPS_NS::EIMPotentialFileReader::ElementData; _Compare = std::less >; _Alloc = std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]', inlined from 'void LAMMPS_NS::EIMPotentialFileReader::get_element(LAMMPS_NS::PairEIM::Setfl*, int, const std::string&)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1184:36: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less >, std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >, std::__cxx11::basic_string, std::allocator > >&>, std::tuple<>}; _Key = std::pair, std::__cxx11::basic_string >; _Val = std::pair, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData>; _KeyOfValue = std::_Select1st, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair, std::__cxx11::basic_string >; _Tp = LAMMPS_NS::EIMPotentialFileReader::PairData; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]', inlined from 'void LAMMPS_NS::EIMPotentialFileReader::get_pair(LAMMPS_NS::PairEIM::Setfl*, int, const std::string&, const std::string&)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1203:27: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_lcbop.cpp In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = LAMMPS_NS::EIMPotentialFileReader::ElementData; _Compare = std::less >; _Alloc = std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> >]', inlined from 'void LAMMPS_NS::EIMPotentialFileReader::parse(FILE*)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1126:22: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, LAMMPS_NS::EIMPotentialFileReader::ElementData>, std::_Select1st, LAMMPS_NS::EIMPotentialFileReader::ElementData> >, std::less >, std::allocator, LAMMPS_NS::EIMPotentialFileReader::ElementData> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::pair, std::__cxx11::basic_string >; _Tp = LAMMPS_NS::EIMPotentialFileReader::PairData; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >]', inlined from 'void LAMMPS_NS::EIMPotentialFileReader::parse(FILE*)' at /build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_eim.cpp:1161:16: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData>, std::_Select1st, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, LAMMPS_NS::EIMPotentialFileReader::PairData> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY/pair_local_density.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_linalg.cpp [ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp: In member function 'void potdata::readpot(const char*, const char*, double)': /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:188:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 188 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:204:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:247:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:307:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 307 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:330:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 330 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:332:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 332 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:344:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 344 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:346:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 346 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:359:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 359 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp: In function 'void getparmindata(const char*, int*, double*, double*, double*)': /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:110:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 110 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:120:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_readpot.cpp:124:12: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 124 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MGPT/mgpt_splinetab.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/compute_viscosity_cos.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/compute_viscosity_cos.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/compute_viscosity_cos.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MISC/compute_viscosity_cos.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/pair.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/MEAM/pair_meam.h:24, from /build/reproducible-path/lammps-20240207+dfsg/src/MEAM/pair_meam.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/fix_accelerate_cos.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD 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CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_tracker.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_tracker.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_tracker.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_tracker.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/pair.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_list.h:23, from /build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_list.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const LAMMPS_NS::PairList::list_param&}; _Tp = LAMMPS_NS::PairList::list_param; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = LAMMPS_NS::PairList::list_param; _Alloc = std::allocator]', inlined from 'virtual void LAMMPS_NS::PairList::settings(int, char**)' at /build/reproducible-path/lammps-20240207+dfsg/src/MISC/pair_list.cpp:324:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF/angle_class2_p6.cpp.o 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/usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/fix_python_move.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/fix_python_move.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/fix_python_move.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/fix_python_move.cpp [ 76%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/pair_python.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION 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-isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/pair_python.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/pair_python.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/pair_python.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/pair_python.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h:31, from /build/reproducible-path/lammps-20240207+dfsg/src/fix.h:17, from /build/reproducible-path/lammps-20240207+dfsg/src/POEMS/fix_poems.h:23, from /build/reproducible-path/lammps-20240207+dfsg/src/POEMS/fix_poems.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long int; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void LAMMPS_NS::FixPOEMS::readfile(const char*)' at /build/reproducible-path/lammps-20240207+dfsg/src/POEMS/fix_poems.cpp:930:52: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON/python_impl.cpp.o /usr/bin/c++ -DFFT_FFTW3 -DFFT_FFTW_THREADS -DLAMMPS_GZIP -DLAMMPS_JPEG -DLAMMPS_MEMALIGN=64 -DLAMMPS_OMP_COMPAT=4 -DLAMMPS_PNG -DLAMMPS_SMALLBIG -DLAMMPS_VTK -DLAMMPS_ZSTD -DLMP_HAS_NETCDF -DLMP_KIM_CURL -DLMP_OPENMP -DLMP_PYTHON -DMPICH_SKIP_MPICXX -DNC_64BIT_DATA=0x0020 -DOMPI_SKIP_MPICXX -D_MPICC_H -Dkiss_fft_scalar=double -Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE 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-I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem 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-isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -isystem /usr/include/python3.11 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.1 -isystem /usr/lib/arm-linux-gnueabihf/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_eam_fs_opt.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_eam_fs_opt.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_eam_fs_opt.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/OPT/pair_eam_fs_opt.cpp [100%] Linking CXX shared library liblammps.so /usr/bin/cmake -E cmake_link_script CMakeFiles/lammps.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,liblammps.so.0 -o liblammps.so.0 @CMakeFiles/lammps.dir/objects1.rsp -Wl,-rpath,/usr/lib/arm-linux-gnueabihf/openmpi/lib:/usr/lib/arm-linux-gnueabihf/hdf5/serial: /usr/lib/arm-linux-gnueabihf/libjpeg.so /usr/lib/arm-linux-gnueabihf/libpng.so /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libfftw3.so /usr/lib/arm-linux-gnueabihf/libfftw3_omp.so /usr/lib/arm-linux-gnueabihf/libpython3.11.so /usr/lib/arm-linux-gnueabihf/libvoro++.so /usr/lib/arm-linux-gnueabihf/libnetcdf.so /usr/lib/arm-linux-gnueabihf/libvtkIOParallelXML-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libcurl.so /usr/lib/arm-linux-gnueabihf/libkim-api.so.2.3.0 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libm.so liblammps_poems.a liblammps_atc.a liblammps_awpmd.a liblammps_h5md.a /usr/lib/arm-linux-gnueabihf/liblapack.so /usr/lib/arm-linux-gnueabihf/libblas.so /usr/lib/arm-linux-gnueabihf/libblas.so -ldl /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libnetcdf.so /usr/lib/arm-linux-gnueabihf/libvtkIOXML-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkIOXMLParser-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkIOLegacy-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkIOCore-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonExecutionModel-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonDataModel-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonTransforms-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonMath-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkkissfft-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libvtkCommonCore-9.1.so.9.1.0 /usr/lib/arm-linux-gnueabihf/libtbb.so.12.11 /usr/lib/arm-linux-gnueabihf/libvtksys-9.1.so.9.1.0 -ldl /usr/lib/arm-linux-gnueabihf/libzstd.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so /usr/lib/arm-linux-gnueabihf/libcrypto.so /usr/lib/arm-linux-gnueabihf/libcurl.so /usr/lib/arm-linux-gnueabihf/libpthread.a /usr/lib/arm-linux-gnueabihf/libsz.so /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libdl.a /usr/lib/arm-linux-gnueabihf/libm.so /usr/bin/cmake -E cmake_symlink_library liblammps.so.0 liblammps.so.0 liblammps.so make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [100%] Built target lammps make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmp.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/lmp.dir/build.make CMakeFiles/lmp.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [100%] Building CXX object CMakeFiles/lmp.dir/build/reproducible-path/lammps-20240207+dfsg/src/main.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/includes -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include -isystem /usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIE -fopenmp -MD -MT CMakeFiles/lmp.dir/build/reproducible-path/lammps-20240207+dfsg/src/main.cpp.o -MF CMakeFiles/lmp.dir/build/reproducible-path/lammps-20240207+dfsg/src/main.cpp.o.d -o CMakeFiles/lmp.dir/build/reproducible-path/lammps-20240207+dfsg/src/main.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/main.cpp [100%] Linking CXX executable lmp /usr/bin/cmake -E cmake_link_script CMakeFiles/lmp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro "CMakeFiles/lmp.dir/build/reproducible-path/lammps-20240207+dfsg/src/main.cpp.o" -o lmp -Wl,-rpath,/build/reproducible-path/lammps-20240207+dfsg/debian/build:/usr/lib/arm-linux-gnueabihf/openmpi/lib: liblammps.so.0 /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi_cxx.so /usr/lib/arm-linux-gnueabihf/openmpi/lib/libmpi.so /usr/lib/gcc/arm-linux-gnueabihf/13/libgomp.so /usr/lib/arm-linux-gnueabihf/libpthread.a make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' [100%] Built target lmp make[2]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' debian/rules execute_after_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' if [ ! -d doc/html.orig ]; then mv doc/html doc/html.orig; fi /usr/bin/make -C doc html make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/doc' sed -e 's/@LAMMPS_SOURCE_DIR@/..\/..\/src/g' doxygen/Doxyfile.in > doxygen/Doxyfile warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 11 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Reading and parsing tag files Parsing files Reading /build/reproducible-path/lammps-20240207+dfsg/src/utils.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/utils.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/utils.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/utils.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/library.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/library.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/library.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/library.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/lammps.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lammps.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lammps.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/pointers.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/lmptype.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/atom.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/atom.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/atom.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/atom.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/input.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/input.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/input.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/input.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/tokenizer.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/arg_info.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/text_file_reader.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/potential_file_reader.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_page.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_page.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_page.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_page.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/my_pool_chunk.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_eigen.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_eigen.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/platform.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/platform.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/platform.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/platform.cpp... Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_special.h... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_special.h... Reading /build/reproducible-path/lammps-20240207+dfsg/src/math_special.cpp... Parsing file /build/reproducible-path/lammps-20240207+dfsg/src/math_special.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file arg_info.h... Generating code for file atom.h... Generating code for file input.h... Generating code for file lammps.h... Generating code for file library.h... Generating code for file lmptype.h... Generating code for file math_eigen.h... Generating code for file math_special.h... Generating code for file my_page.h... Generating code for file my_pool_chunk.h... Generating code for file platform.h... Generating code for file pointers.h... Generating code for file potential_file_reader.h... Generating code for file text_file_reader.h... Generating code for file tokenizer.h... Generating code for file utils.h... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound compress_info... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for compound LAMMPS_NS::Atom... Generating docs for compound LAMMPS_NS::Input... Generating docs for compound LAMMPS_NS::InvalidFloatException... Generating docs for compound LAMMPS_NS::InvalidIntegerException... Generating docs for compound LAMMPS_NS::LAMMPS... Generating docs for compound LAMMPS_NS::multitype... Generating docs for compound LAMMPS_NS::MyPage... Generating docs for compound LAMMPS_NS::MyPoolChunk... Generating docs for compound LAMMPS_NS::Pointers... Generating docs for compound LAMMPS_NS::TokenizerException... Generating docs for compound LAMMPS_NS::ubuf... Generating graph info page... Generating directory documentation... finalizing index lists... writing tag file... Generating XML output... Generating XML output for class LAMMPS_NS::ArgInfo Generating XML output for class LAMMPS_NS::Atom Generating XML output for class compress_info Generating XML output for class LAMMPS_NS::EOFException Generating XML output for class LAMMPS_NS::FileReaderException Generating XML output for class LAMMPS_NS::Atom::HashElem Generating XML output for class LAMMPS_NS::HyperOneCoeff Generating XML output for class LAMMPS_NS::Input Generating XML output for class LAMMPS_NS::InvalidFloatException Generating XML output for class LAMMPS_NS::InvalidIntegerException Generating XML output for class LAMMPS_NS::LAMMPS Generating XML output for class LAMMPS_NS::multitype Generating XML output for class LAMMPS_NS::MyPage Generating XML output for class LAMMPS_NS::MyPoolChunk Generating XML output for class LAMMPS_NS::package_styles_lists Generating XML output for class LAMMPS_NS::Atom::PerAtom Generating XML output for class LAMMPS_NS::Pointers Generating XML output for class LAMMPS_NS::PotentialFileReader Generating XML output for class regex_context_t Generating XML output for class regex_t Generating XML output for class LAMMPS_NS::TextFileReader Generating XML output for class LAMMPS_NS::Tokenizer Generating XML output for class LAMMPS_NS::TokenizerException Generating XML output for class LAMMPS_NS::ubuf Generating XML output for class udi_t Generating XML output for class LAMMPS_NS::ValueTokenizer Generating XML output for namespace LAMMPS_NS Generating XML output for namespace LAMMPS_NS::MathSpecial Generating XML output for namespace LAMMPS_NS::platform Generating XML output for namespace LAMMPS_NS::utils Generating XML output for namespace MathConst Generating XML output for namespace MathEigen Generating XML output for namespace std Generating XML output for file arg_info.cpp Generating XML output for file arg_info.h Generating XML output for file atom.cpp Generating XML output for file atom.h Generating XML output for file input.cpp Generating XML output for file input.h Generating XML output for file lammps.cpp Generating XML output for file lammps.h Generating XML output for file library.cpp Generating XML output for file library.h Generating XML output for file lmptype.h Generating XML output for file math_eigen.h Generating XML output for file math_special.cpp Generating XML output for file math_special.h Generating XML output for file my_page.cpp Generating XML output for file my_page.h Generating XML output for file my_pool_chunk.cpp Generating XML output for file my_pool_chunk.h Generating XML output for file platform.cpp Generating XML output for file platform.h Generating XML output for file pointers.h Generating XML output for file potential_file_reader.cpp Generating XML output for file potential_file_reader.h Generating XML output for file text_file_reader.cpp Generating XML output for file text_file_reader.h Generating XML output for file tokenizer.cpp Generating XML output for file tokenizer.h Generating XML output for file utils.cpp Generating XML output for file utils.h Generate XML output for dir /build/reproducible-path/lammps-20240207+dfsg/src/ Running plantuml with JAVA... Running dot... type lookup cache used 7693/262144 hits=62872 misses=7925 symbol lookup cache used 5303/262144 hits=49970 misses=5303 finished... sed -e 's,@DOXYGEN_XML_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/doxygen/xml,g' \ -e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \ -e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \ -e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters Installing build dependencies: started Installing build dependencies: finished with status 'error' error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [8 lines of output] WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none) ERROR: No matching distribution found for setuptools>=40.8.0 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output. note: This error originates from a subprocess, and is likely not a problem with pip. make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/doc/graphviz' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/doc/graphviz' Running Sphinx v7.2.6 Initializing Spelling Checker 7.7.0 making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 987 source files that are out of date updating environment: [new config] 987 added, 0 changed, 0 removed reading sources... [ 5%] Bibliography .. Developer_updating reading sources... [ 10%] Developer_utils .. Howto_spherical reading sources... [ 14%] Howto_spins .. Modify_contribute reading sources... [ 19%] Modify_dump .. Speed_opt reading sources... [ 24%] Speed_packages .. atc_extrinsic_exchange reading sources... [ 29%] atc_fe_md_boundary .. atc_temperature_definition reading sources... [ 33%] atc_time_filter .. compute_angmom_chunk reading sources... [ 38%] compute_ave_sphere_atom .. compute_improper reading sources... [ 43%] compute_improper_local .. compute_smd_tlsph_num_neighs reading sources... [ 48%] compute_smd_tlsph_shape .. create_atoms reading sources... [ 52%] create_bonds .. fix_amoeba_bitorsion reading sources... [ 57%] fix_amoeba_pitorsion .. fix_freeze reading sources... [ 62%] fix_gcmc .. fix_nve reading sources... [ 67%] fix_nve_asphere .. fix_reaxff_bonds reading sources... [ 71%] fix_reaxff_species .. fix_wall_gran_region reading sources... [ 76%] fix_wall_piston .. neb_spin reading sources... [ 81%] neigh_modify .. pair_exp6_rx reading sources... [ 86%] pair_extep .. pair_momb reading sources... [ 90%] pair_morse .. pair_tersoff_zbl reading sources... [ 95%] pair_thole .. unfix reading sources... [100%] units .. write_restart WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Classes_lammps.rst:4: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func :4: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:4: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:43: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:254: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:module /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:257: ERROR: Unknown directive type "f:module". .. f:module:: LIBLAMMPS WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:259: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:currentmodule /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:262: ERROR: Unknown directive type "f:currentmodule". .. f:currentmodule:: None WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:264: ERROR: Unknown directive type "f:type". .. f:type:: lammps Derived type that is the general class of the Fortran interface. It holds a reference to the :cpp:class:`LAMMPS ` class instance to which any of the included calls are forwarded. :f handle: reference to the LAMMPS class :ftype handle: c_ptr :f style: derived type to access lammps style constants :ftype style: type(lammps_style) :f type: derived type to access lammps type constants :ftype type: type(lammps_type) :f dtype: derived type to access lammps data type constants :ftype dtype: type(lammps_dtype) :f close: :f:subr:`close` :ftype close: subroutine :f subroutine error: :f:subr:`error` :ftype error: subroutine :f file: :f:subr:`file` :ftype file: subroutine :f command: :f:subr:`command` :ftype command: subroutine :f commands_list: :f:subr:`commands_list` :ftype commands_list: subroutine :f commands_string: :f:subr:`commands_string` :ftype commands_string: subroutine :f get_natoms: :f:func:`get_natoms` :ftype get_natoms: function :f get_thermo: :f:func:`get_thermo` :ftype get_thermo: function :f last_thermo: :f:func:`last_thermo` :ftype last_thermo: function :f extract_box: :f:subr:`extract_box` :ftype extract_box: subroutine :f reset_box: :f:subr:`reset_box` :ftype reset_box: subroutine :f memory_usage: :f:subr:`memory_usage` :ftype memory_usage: subroutine :f get_mpi_comm: :f:func:`get_mpi_comm` :ftype get_mpi_comm: function :f extract_setting: :f:func:`extract_setting` :ftype extract_setting: function :f extract_global: :f:func:`extract_global` :ftype extract_global: function :f extract_atom: :f:func:`extract_atom` :ftype extract_atom: function :f extract_compute: :f:func:`extract_compute` :ftype extract_compute: function :f extract_fix: :f:func:`extract_fix` :ftype extract_fix: function :f extract_variable: :f:func:`extract_variable` :ftype extract_variable: function :f set_variable: :f:subr:`set_variable` :ftype set_variable: subroutine :f set_string_variable: :f:subr:`set_set_string_variable` :ftype set_string_variable: subroutine :f set_internal_variable: :f:subr:`set_internal_variable` :ftype set_internal_variable: subroutine :f gather_atoms: :f:subr:`gather_atoms` :ftype gather_atoms: subroutine :f gather_atoms_concat: :f:subr:`gather_atoms_concat` :ftype gather_atoms_concat: subroutine :f gather_atoms_subset: :f:subr:`gather_atoms_subset` :ftype gather_atoms_subset: subroutine :f scatter_atoms: :f:subr:`scatter_atoms` :ftype scatter_atoms: subroutine :f scatter_atoms_subset: :f:subr:`scatter_atoms_subset` :ftype scatter_atoms_subset: subroutine :f gather_bonds: :f:subr:`gather_bonds` :ftype gather_bonds: subroutine :f gather_angles: :f:subr:`gather_angles` :ftype gather_angles: subroutine :f gather_dihedrals: :f:subr:`gather_dihedrals` :ftype gather_dihedrals: subroutine :f gather_impropers: :f:subr:`gather_impropers` :ftype gather_impropers: subroutine :f gather: :f:subr:`gather` :ftype gather: subroutine :f gather_concat: :f:subr:`gather_concat` :ftype gather_concat: subroutine :f gather_subset: :f:subr:`gather_subset` :ftype gather_subset: subroutine :f scatter: :f:subr:`scatter` :ftype scatter: subroutine :f scatter_subset: :f:subr:`scatter_subset` :ftype scatter_subset: subroutine :f create_atoms: :f:subr:`create_atoms` :ftype create_atoms: subroutine :f find_pair_neighlist: :f:func:`find_pair_neighlist` :ftype find_pair_neighlist: function :f find_fix_neighlist: :f:func:`find_fix_neighlist` :ftype find_fix_neighlist: function :f find_compute_neighlist: :f:func:`find_compute_neighlist` :ftype find_compute_neighlist: function :f neighlist_num_elements: :f:func:`neighlist_num_elements` :ftype neighlist_num_elements: function :f neighlist_element_neighbors: :f:subr:`neighlist_element_neighbors` :ftype neighlist_element_neighbors: subroutine :f version: :f:func:`version` :ftype version: function :f get_os_info: :f:subr:`get_os_info` :ftype get_os_info: subroutine :f config_has_mpi_support: :f:func:`config_has_mpi_support` :ftype config_has_mpi_support: function :f config_has_gzip_support: :f:func:`config_has_gzip_support` :ftype config_has_gzip_support: function :f config_has_png_support: :f:func:`config_has_png_support` :ftype config_has_png_support: function :f config_has_jpeg_support: :f:func:`config_has_jpeg_support` :ftype config_has_jpeg_support: function :f config_has_ffmpeg_support: :f:func:`config_has_ffmpeg_support` :ftype config_has_ffmpeg_support: function :f config_has_exceptions: :f:func:`config_has_exceptions` :ftype config_has_exceptions: function :f config_has_package: :f:func:`config_has_package` :ftype config_has_package: function :f config_package_count: :f:func:`config_package_count` :ftype config_package_count: function :f config_package_name: :f:func:`config_package_name` :ftype config_package_name: function :f installed_packages: :f:subr:`installed_packages` :ftype installed_packages: subroutine :f config_accelerator: :f:func:`config_accelerator` :ftype config_accelerator: function :f has_gpu_device: :f:func:`has_gpu_device` :ftype has_gpu_device: function :f get_gpu_device_info: :f:subr:`get_gpu_device_info` :ftype get_gpu_device_info: subroutine :f has_style: :f:func:`has_style` :ftype has_style: function :f style_count: :f:func:`style_count` :ftype style_count: function :f style_name: :f:func:`style_name` :ftype style_name: function :f has_id: :f:func:`has_id` :ftype has_id: function :f id_count: :f:func:`id_count` :ftype id_count: function :f id_name: :f:subr:`id_name` :ftype id_name: subroutine :f plugin_count: :f:func:`plugin_count` :ftype plugin_count: function :f plugin_name: :f:subr:`plugin_name` :ftype plugin_count: subroutine :f encode_image_flags: :f:func:`encode_image_flags` :ftype encode_image_flags: function :f decode_image_flags: :f:subr:`decode_image_flags` :ftype decode_image_flags: subroutine :f set_fix_external_callback: :f:subr:`set_fix_external_callback` :ftype set_fix_external_callback: subroutine :f fix_external_get_force: :f:func:`fix_external_get_force` :ftype fix_external_get_force: function :f fix_external_set_energy_global: :f:subr:`fix_external_set_energy_global` :ftype fix_external_set_energy_global: subroutine :f fix_external_set_virial_global: :f:subr:`fix_external_set_virial_global` :ftype fix_external_set_virial_global: subroutine :f fix_external_set_energy_peratom: :f:subr:`fix_external_set_energy_peratom` :ftype fix_external_set_energy_peratom: subroutine :f fix_external_set_virial_peratom: :f:subr:`fix_external_set_virial_peratom` :ftype fix_external_set_virial_peratom: subroutine :f fix_external_set_vector_length: :f:subr:`fix_external_set_vector_length` :ftype fix_external_set_vector_length: subroutine :f fix_external_set_vector: :f:subr:`fix_external_set_vector` :ftype fix_external_set_vector: subroutine :f flush_buffers: :f:subr:`flush_buffers` :ftype flush_buffers: subroutine :f is_running: :f:func:`is_running` :ftype is_running: function :f force_timeout: :f:subr:`force_timeout` :ftype force_timeout: subroutine :f has_error: :f:func:`has_error` :ftype has_error: function :f get_last_error_message: :f:subr:`get_last_error_message` :ftype get_last_error_message: subroutine WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:441: ERROR: Unknown directive type "f:function". .. f:function:: lammps([args][,comm]) This is the constructor for the Fortran class and will forward the arguments to a call to either :cpp:func:`lammps_open_fortran` or :cpp:func:`lammps_open_no_mpi`. If the LAMMPS library has been compiled with MPI support, it will also initialize MPI, if it has not already been initialized before. The *args* argument with the list of command line parameters is optional and so it the *comm* argument with the MPI communicator. If *comm* is not provided, ``MPI_COMM_WORLD`` is assumed. For more details please see the documentation of :cpp:func:`lammps_open`. :o args: arguments as list of strings :otype args: character(len=\*),dimension(:),optional :o comm: MPI communicator :otype comm: integer,optional :to: :cpp:func:`lammps_open_fortran` :to: :cpp:func:`lammps_open_no_mpi` :r lammps: an instance of the :f:type:`lammps` derived type .. note:: The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI, is not directly supported by this interface due to the complexities of supporting both the :f:mod:`MPI_F08` and :f:mod:`MPI` modules at the same time. However, you should be able to use the ``MPI_VAL`` member of the ``MPI_comm`` derived type to access the integer value of the communicator, such as in .. code-block:: fortran PROGRAM testmpi USE LIBLAMMPS USE MPI_F08 TYPE(lammps) :: lmp lmp = lammps(comm=MPI_COMM_SELF%MPI_VAL) END PROGRAM testmpi WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:480: ERROR: Unknown directive type "f:type". .. f:type:: lammps_style This derived type is there to provide a convenient interface for the style constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and :f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``, these constants will be ``lmp%style%global``, ``lmp%style%atom``, and ``lmp%style%local``. These values are identical to the values described in :cpp:enum:`_LMP_STYLE_CONST` for the C library interface. :f integer(c_int) global: used to request global data :f integer(c_int) atom: used to request per-atom data :f integer(c_int) local: used to request local data WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:493: ERROR: Unknown directive type "f:type". .. f:type:: lammps_type This derived type is there to provide a convenient interface for the type constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and :f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``, these constants will be ``lmp%type%scalar``, ``lmp%type%vector``, and ``lmp%type%array``. These values are identical to the values described in :cpp:enum:`_LMP_TYPE_CONST` for the C library interface. :f integer(c_int) scalar: used to request scalars :f integer(c_int) vector: used to request vectors :f integer(c_int) array: used to request arrays (matrices) WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:506: ERROR: Unknown interpreted text role "f:type". WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:509: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: close([finalize]) This method will close down the LAMMPS instance through calling :cpp:func:`lammps_close`. If the *finalize* argument is present and has a value of ``.TRUE.``, then this subroutine also calls :cpp:func:`lammps_kokkos_finalize` and :cpp:func:`lammps_mpi_finalize`. :o finalize: shut down the MPI environment of the LAMMPS library if ``.TRUE.``. :otype finalize: logical,optional :to: :cpp:func:`lammps_close` :to: :cpp:func:`lammps_mpi_finalize` :to: :cpp:func:`lammps_kokkos_finalize` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:526: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: error(error_type, error_text) This method is a wrapper around the :cpp:func:`lammps_error` function and will dispatch an error through the LAMMPS Error class. .. versionadded:: 3Nov2022 :p error_type: constant to select which Error class function to call :ptype error_type: integer(c_int) :p character(len=\*) error_text: error message :to: :cpp:func:`lammps_error` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:540: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: file(filename) This method will call :cpp:func:`lammps_file` to have LAMMPS read and process commands from a file. :p character(len=\*) filename: name of file with LAMMPS commands :to: :cpp:func:`lammps_file` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:550: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: command(cmd) This method will call :cpp:func:`lammps_command` to have LAMMPS execute a single command. :p character(len=\*) cmd: single LAMMPS command :to: :cpp:func:`lammps_command` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:560: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: commands_list(cmds) This method will call :cpp:func:`lammps_commands_list` to have LAMMPS execute a list of input lines. :p character(len=\*) cmd [dimension(:)]: list of LAMMPS input lines :to: :cpp:func:`lammps_commands_list` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:570: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: commands_string(str) This method will call :cpp:func:`lammps_commands_string` to have LAMMPS execute a block of commands from a string. :p character(len=\*) str: LAMMPS input in string :to: :cpp:func:`lammps_commands_string` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:580: ERROR: Unknown directive type "f:function". .. f:function:: get_natoms() This function will call :cpp:func:`lammps_get_natoms` and return the number of atoms in the system. :to: :cpp:func:`lammps_get_natoms` :r real(c_double) natoms: number of atoms .. note:: If you would prefer to get the number of atoms in its native format (i.e., as a 32- or 64-bit integer, depending on how LAMMPS was compiled), this can be extracted with :f:func:`extract_global`. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:596: ERROR: Unknown directive type "f:function". .. f:function:: get_thermo(name) This function will call :cpp:func:`lammps_get_thermo` and return the value of the corresponding thermodynamic keyword. .. versionadded:: 3Nov2022 :p character(len=\*) name: string with the name of the thermo keyword :to: :cpp:func:`lammps_get_thermo` :r value [real(c_double)]: value of the requested thermo property or `0.0_c_double` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:609: ERROR: Unknown directive type "f:function". .. f:function:: last_thermo(what, index) This function will call :cpp:func:`lammps_last_thermo` and returns either a string or a pointer to a cached copy of LAMMPS last thermodynamic output, depending on the data requested through *what*. Note that *index* uses 1-based indexing to access thermo output columns. .. versionadded:: 15Jun2023 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data (with the exception of string data, which are copied and returned as ordinary Fortran strings). Pointers must be of the correct data type to point to said data (typically ``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``). The pointer being associated with LAMMPS data is type-checked at run-time via an overloaded assignment operator. The pointers returned by this function point to temporary, read-only data that may be overwritten at any time, so their target values need to be copied to local storage if they are supposed to persist. For example, .. code-block:: fortran PROGRAM thermo USE LIBLAMMPS USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_double, c_int64_t, c_int TYPE(lammps) :: lmp INTEGER(KIND=c_int64_t), POINTER :: ntimestep, bval REAL(KIND=c_double), POINTER :: dval INTEGER(KIND=c_int), POINTER :: nfield, typ, ival INTEGER(KIND=c_int) :: i CHARACTER(LEN=11) :: key lmp = lammps() CALL lmp%file('in.sysinit') ntimestep = lmp%last_thermo('step', 0) nfield = lmp%last_thermo('num', 0) PRINT*, 'Last thermo output on step: ', ntimestep, ' Number of fields: ', nfield DO i=1, nfield key = lmp%last_thermo('keyword',i) typ = lmp%last_thermo('type',i) IF (typ == lmp%dtype%i32) THEN ival = lmp%last_thermo('data',i) PRINT*, key, ':', ival ELSE IF (typ == lmp%dtype%i64) THEN bval = lmp%last_thermo('data',i) PRINT*, key, ':', bval ELSE IF (typ == lmp%dtype%r64) THEN dval = lmp%last_thermo('data',i) PRINT*, key, ':', dval END IF END DO CALL lmp%close(.TRUE.) END PROGRAM thermo would extract the last timestep where thermo output was done and the number of columns it printed. Then it loops over the columns to print out column header keywords and the corresponding data. .. note:: If :f:func:`last_thermo` returns a string, the string must have a length greater than or equal to the length of the string (not including the terminal ``NULL`` character) that LAMMPS returns. If the variable's length is too short, the string will be truncated. As usual in Fortran, strings are padded with spaces at the end. If you use an allocatable string, the string **must be allocated** prior to calling this function. :p character(len=\*) what: string with the name of the thermo keyword :p integer(c_int) index: 1-based column index :to: :cpp:func:`lammps_last_thermo` :r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the assignment should be either a string (if expecting string data) or a C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the extracted property. .. warning:: Modifying the data in the location pointed to by the returned pointer may lead to inconsistent internal data and thus may cause failures, crashes, or bogus simulations. In general, it is much better to use a LAMMPS input command that sets or changes these parameters. Using an input command will take care of all side effects and necessary updates of settings derived from such settings. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:699: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: extract_box([boxlo][, boxhi][, xy][, yz][, xz][, pflags][, boxflag]) This subroutine will call :cpp:func:`lammps_extract_box`. All parameters are optional, though obviously at least one should be present. The parameters *pflags* and *boxflag* are stored in LAMMPS as integers, but should be declared as ``LOGICAL`` variables when calling from Fortran. .. versionadded:: 3Nov2022 :o real(c_double) boxlo [dimension(3),optional]: vector in which to store lower-bounds of simulation box :o real(c_double) boxhi [dimension(3),optional]: vector in which to store upper-bounds of simulation box :o real(c_double) xy [optional]: variable in which to store *xy* tilt factor :o real(c_double) yz [optional]: variable in which to store *yz* tilt factor :o real(c_double) xz [optional]: variable in which to store *xz* tilt factor :o pflags: vector in which to store periodicity flags (``.TRUE.`` means periodic in that dimension) :otype pflags: logical,dimension(3),optional :o boxflag: variable in which to store boolean denoting whether the box will change during a simulation (``.TRUE.`` means box will change) :otype boxflag: logical,optional :to: :cpp:func:`lammps_extract_box` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:741: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: reset_box(boxlo, boxhi, xy, yz, xz) This subroutine will call :cpp:func:`lammps_reset_box`. All parameters are required. .. versionadded:: 3Nov2022 :p real(c_double) boxlo [dimension(3)]: vector of three doubles containing the lower box boundary :p real(c_double) boxhi [dimension(3)]: vector of three doubles containing the upper box boundary :p real(c_double) xy: *x--y* tilt factor :p real(c_double) yz: *y--z* tilt factor :p real(c_double) xz: *x--z* tilt factor :to: :cpp:func:`lammps_reset_box` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:759: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: memory_usage(meminfo) This subroutine will call :cpp:func:`lammps_memory_usage` and store the result in the three-element array *meminfo*. .. versionadded:: 3Nov2022 :p real(c_double) meminfo [dimension(3)]: vector of three doubles in which to store memory usage data :to: :cpp:func:`lammps_memory_usage` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:772: ERROR: Unknown directive type "f:function". .. f:function:: get_mpi_comm() This function returns a Fortran representation of the LAMMPS "world" communicator. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_get_mpi_comm` :r comm: Fortran integer equivalent to the MPI communicator LAMMPS is using :rtype comm: integer .. note:: The C library interface currently returns type ``int`` instead of type ``MPI_Fint``, which is the C type corresponding to Fortran ``INTEGER`` types of the default kind. On most compilers, these are the same anyway, but this interface exchanges values this way to avoid warning messages. .. note:: The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI, is not directly supported by this function. However, you should be able to convert between the two using the `MPI_VAL` member of the communicator. For example, .. code-block:: fortran USE MPI_F08 USE LIBLAMMPS TYPE(lammps) :: lmp TYPE(MPI_Comm) :: comm ! ... [commands to set up LAMMPS/etc.] comm%MPI_VAL = lmp%get_mpi_comm() should assign an :f:mod:`MPI_F08` communicator properly. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:812: ERROR: Unknown directive type "f:function". .. f:function:: extract_setting(keyword) Query LAMMPS about global settings. See the documentation for the :cpp:func:`lammps_extract_setting` function from the C library. .. versionadded:: 3Nov2022 :p character(len=\*) keyword: string containing the name of the thermo keyword :to: :cpp:func:`lammps_extract_setting` :r integer(c_int) setting: value of the queried setting or :math:`-1` if unknown WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:826: ERROR: Unknown directive type "f:function". .. f:function:: extract_global(name) This function calls :cpp:func:`lammps_extract_global` and returns either a string or a pointer to internal global LAMMPS data, depending on the data requested through *name*. .. versionadded:: 3Nov2022 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data (with the exception of string data, which are copied and returned as ordinary Fortran strings). Pointers must be of the correct data type to point to said data (typically ``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``) and have compatible kind and rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. The pointers returned by this function are generally persistent; therefore it is not necessary to call the function again unless a :doc:`clear` command has been issued, which wipes out and recreates the contents of the :cpp:class:`LAMMPS ` class. For example, .. code-block:: fortran PROGRAM demo USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int64_t, c_int, c_double USE LIBLAMMPS TYPE(lammps) :: lmp INTEGER(c_int), POINTER :: nlocal => NULL() INTEGER(c_int64_t), POINTER :: ntimestep => NULL() REAL(c_double), POINTER :: dt => NULL() CHARACTER(LEN=10) :: units lmp = lammps() ! other commands nlocal = lmp%extract_global('nlocal') ntimestep = lmp%extract_global('ntimestep') dt = lmp%extract_global('dt') units = lmp%extract_global('units') ! more commands lmp.close(.TRUE.) END PROGRAM demo would extract the number of atoms on this processor, the current time step, the size of the current time step, and the units being used into the variables *nlocal*, *ntimestep*, *dt*, and *units*, respectively. .. note:: If :f:func:`extract_global` returns a string, the string must have a length greater than or equal to the length of the string (not including the terminal ``NULL`` character) that LAMMPS returns. If the variable's length is too short, the string will be truncated. As usual in Fortran, strings are padded with spaces at the end. If you use an allocatable string, the string **must be allocated** prior to calling this function, but you can automatically reallocate it to the correct length after the function returns, viz., .. code-block :: fortran PROGRAM test USE LIBLAMMPS TYPE(lammps) :: lmp CHARACTER(LEN=:), ALLOCATABLE :: str lmp = lammps() CALL lmp%command('units metal') ALLOCATE(CHARACTER(LEN=80) :: str) str = lmp%extract_global('units') str = TRIM(str) ! re-allocates to length len_trim(str) here PRINT*, LEN(str), LEN_TRIM(str) END PROGRAM test will print the number 5 (the length of the word "metal") twice. :p character(len=\*) name: string with the name of the property to extract :to: :cpp:func:`lammps_extract_global` :r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the assignment should be either a string (if expecting string data) or a C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the extracted property. If expecting vector data, the pointer should have dimension ":". .. warning:: Modifying the data in the location pointed to by the returned pointer may lead to inconsistent internal data and thus may cause failures, crashes, or bogus simulations. In general, it is much better to use a LAMMPS input command that sets or changes these parameters. Using an input command will take care of all side effects and necessary updates of settings derived from such settings. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:921: ERROR: Unknown directive type "f:function". .. f:function:: extract_atom(name) This function calls :cpp:func:`lammps_extract_atom` and returns a pointer to LAMMPS data tied to the :cpp:class:`Atom` class, depending on the data requested through *name*. .. versionadded:: 3Nov2022 Note that this function actually does not return a pointer, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct type, kind, and rank (e.g., ``INTEGER(c_int), DIMENSION(:)`` for "type", "mask", or "id"; ``INTEGER(c_int64_t), DIMENSION(:)`` for "id" if LAMMPS was compiled with the ``-DLAMMPS_BIGBIG`` flag; ``REAL(c_double), DIMENSION(:,:)`` for "x", "v", or "f"; and so forth). The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time. :p character(len=\*) name: string with the name of the property to extract :to: :cpp:func:`lammps_extract_atom` :r pointer: pointer to LAMMPS data. The left-hand side of the assignment should be a C-interoperable pointer of appropriate kind and rank (e.g., ``INTEGER(c_int), POINTER :: mask(:)``) to the extracted property. If expecting vector data, the pointer should have dimension ":"; if expecting matrix data, the pointer should have dimension ":,:". :rtype pointer: polymorphic .. warning:: Pointers returned by this function are generally not persistent, as per-atom data may be redistributed, reallocated, and reordered at every re-neighboring operation. It is advisable to re-bind pointers using :f:func:`extract_atom` between runs. .. admonition:: Array index order Two-dimensional arrays returned from :f:func:`extract_atom` will be **transposed** from equivalent arrays in C, and they will be indexed from 1 instead of 0. For example, in C, .. code-block:: c void *lmp; double **x; /* more code to setup, etc. */ x = lammps_extract_atom(lmp, "x"); printf("%f\n", x[5][1]); will print the *y*-coordinate of the sixth atom on this processor. Conversely, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:,:), POINTER :: x => NULL() ! more code to setup, etc. x = lmp%extract_atom("x") PRINT '(f0.6)', x(2,6) will print the *y*-coordinate of the sixth atom on this processor (note the transposition of the two indices). This is not a choice, but rather a consequence of the different conventions adopted by the Fortran and C standards decades ago: in C, the block of data .. parsed-literal:: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 interpreted as a :math:`4\times4` matrix would be .. math:: \begin{bmatrix} 1 & 2 & 3 & 4 \\ 5 & 6 & 7 & 8 \\ 9 & 10 & 11 & 12 \\ 13 & 14 & 15 & 16 \end{bmatrix}, that is, in row-major order. In Fortran, the same block of data is interpreted in column-major order, namely, .. math:: \begin{bmatrix} 1 & 5 & 9 & 13 \\ 2 & 6 & 10 & 14 \\ 3 & 7 & 11 & 15 \\ 4 & 8 & 12 & 16 \end{bmatrix}. This difference in interpretation of the same block of data by the two languages means, in effect, that matrices from C or C++ will be transposed when interpreted in Fortran. .. note:: If you would like the indices to start at 0 instead of 1 (which follows typical notation in C and C++, but not Fortran), you can create another pointer and associate it thus: .. code-block:: fortran REAL(c_double), DIMENSION(:,:), POINTER :: x, x0 x = lmp%extract_atom("x") x0(0:,0:) => x The above would cause the dimensions of *x* to be (1:3, 1:nmax) and those of *x0* to be (0:2, 0:nmax\ :math:`-`\ 1). WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1032: ERROR: Unknown directive type "f:function". .. f:function:: extract_compute(id, style, type) This function calls :cpp:func:`lammps_extract_compute` and returns a pointer to LAMMPS data tied to the :cpp:class:`Compute` class, specifically data provided by the compute identified by *id*. Computes may provide global, per-atom, or local data, and those data may be a scalar, a vector, or an array. Since computes may provide multiple kinds of data, the user is required to specify which set of data is to be returned through the *style* and *type* variables. .. versionadded:: 3Nov2022 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct data type to point to said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: COM ! code to setup, create atoms, etc. CALL lmp%command('compute COM all com') COM = lmp%extract_compute('COM', lmp%style%global, lmp%style%type) will bind the variable *COM* to the center of mass of the atoms created in your simulation. The vector in this case has length 3; the length (or, in the case of array data, the number of rows and columns) is determined for you based on data from the :cpp:class:`Compute` class. .. admonition:: Array index order Two-dimensional arrays returned from :f:func:`extract_compute` will be **transposed** from equivalent arrays in C, and they will be indexed from 1 instead of 0. See the note at :f:func:`extract_atom` for further details. The following combinations are possible (assuming ``lmp`` is the name of your LAMMPS instance): .. list-table:: :header-rows: 1 :widths: auto * - Style - Type - Type to assign to - Returned data * - ``lmp%style%global`` - ``lmp%type%scalar`` - ``REAL(c_double), POINTER`` - Global scalar * - ``lmp%style%global`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Global vector * - ``lmp%style%global`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Global array * - ``lmp%style%atom`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%atom`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array * - ``lmp%style%local`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Local vector * - ``lmp%style%local`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Local array :p character(len=\*) id: compute ID from which to extract data :p integer(c_int) style: value indicating the style of data to extract (global, per-atom, or local) :p integer(c_int) type: value indicating the type of data to extract (scalar, vector, or array) :to: :cpp:func:`lammps_extract_compute` :r pointer: pointer to LAMMPS data. The left-hand side of the assignment should be a C-compatible pointer (e.g., ``REAL(c_double), POINTER :: x``) to the extracted property. If expecting vector data, the pointer should have dimension ":"; if expecting array (matrix) data, the pointer should have dimension ":,:". :rtype pointer: polymorphic .. note:: If the compute's data are not already computed for the current step, the compute will be invoked. LAMMPS cannot easily check at that time if it is valid to invoke a compute, so it may fail with an error. The caller has to check to avoid such an error. .. warning:: The pointers returned by this function are generally not persistent, since the computed data may be re-distributed, re-allocated, and re-ordered at every invocation. It is advisable to re-invoke this function before the data are accessed or make a copy if the data are to be used after other LAMMPS commands have been issued. Do **not** modify the data returned by this function. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1144: ERROR: Unknown directive type "f:function". .. f:function:: extract_fix(id, style, type[, nrow][, ncol]) This function calls :cpp:func:`lammps_extract_fix` and returns a pointer to LAMMPS data tied to the :cpp:class:`Fix` class, specifically data provided by the fix identified by *id*. Fixes may provide global, per-atom, or local data, and those data may be a scalar, a vector, or an array. Since many fixes provide multiple kinds of data, the user is required to specify which set of data is to be returned through the *style* and *type* variables. .. versionadded:: 3Nov2022 Global data are calculated at the time they are requested and are only available element-by-element. As such, the user is expected to provide the *nrow* variable to specify which element of a global vector or the *nrow* and *ncol* variables to specify which element of a global array the user wishes LAMMPS to return. The *ncol* variable is optional for global scalar or vector data, and both *nrow* and *ncol* are optional when a global scalar is requested, as well as when per-atom or local data are requested. The following combinations are possible (assuming ``lmp`` is the name of your LAMMPS instance): .. list-table:: :header-rows: 1 :widths: auto * - Style - Type - nrow - ncol - Type to assign to - Returned data * - ``lmp%style%global`` - ``lmp%type%scalar`` - Ignored - Ignored - ``REAL(c_double)`` - Global scalar * - ``lmp%style%global`` - ``lmp%type%vector`` - Required - Ignored - ``REAL(c_double)`` - Element of global vector * - ``lmp%style%global`` - ``lmp%type%array`` - Required - Required - ``REAL(c_double)`` - Element of global array * - ``lmp%style%atom`` - ``lmp%type%scalar`` - - - - (not allowed) * - ``lmp%style%atom`` - ``lmp%type%vector`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%atom`` - ``lmp%type%array`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array * - ``lmp%style%local`` - ``lmp%type%scalar`` - - - - (not allowed) * - ``lmp%style%local`` - ``lmp%type%vector`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%local`` - ``lmp%type%array`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array In the case of global data, this function returns a value of type ``REAL(c_double)``. For per-atom or local data, this function does not return a value but instead associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct type and kind to point to said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double) :: dr, dx, dy, dz ! more code to set up, etc. lmp%command('fix george all recenter 2 2 2') ! more code dr = lmp%extract_fix("george", lmp%style%global, lmp%style%scalar) dx = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 1) dy = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 2) dz = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 3) will extract the global scalar calculated by :doc:`fix recenter ` into the variable *dr* and the three elements of the global vector calculated by fix recenter into the variables *dx*, *dy*, and *dz*, respectively. If asked for per-atom or local data, :f:func:`extract_compute` returns a pointer to actual LAMMPS data. The pointer so returned will have the appropriate size to match the internal data, and will be type/kind/rank-checked at the time of the assignment. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: r ! more code to set up, etc. lmp%command('fix state all store/state 0 x y z') ! more code r = lmp%extract_fix('state', lmp%style%atom, lmp%type%array) will bind the pointer *r* to internal LAMMPS data representing the per-atom array computed by :doc:`fix store/state ` when three inputs are specified. Similarly, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: x ! more code to set up, etc. lmp%command('fix state all store/state 0 x') ! more code x = lmp%extract_fix('state', lmp%style%atom, lmp%type%vector) will associate the pointer *x* with internal LAMMPS data corresponding to the per-atom vector computed by :doc:`fix store/state ` when only one input is specified. Similar examples with ``lmp%style%atom`` replaced by ``lmp%style%local`` will extract local data from fixes that define local vectors and/or arrays. .. warning:: The pointers returned by this function for per-atom or local data are generally not persistent, since the computed data may be redistributed, reallocated, and reordered at every invocation of the fix. It is thus advisable to re-invoke this function before the data are accessed or to make a copy if the data are to be used after other LAMMPS commands have been issued. .. note:: LAMMPS cannot easily check if it is valid to access the data, so it may fail with an error. The caller has to avoid such an error. :p character(len=\*) id: string with the name of the fix from which to extract data :p integer(c_int) style: value indicating the style of data to extract (global, per-atom, or local) :p integer(c_int) type: value indicating the type of data to extract (scalar, vector, or array) :p integer(c_int) nrow: row index (used only for global vectors and arrays) :p integer(c_int) ncol: column index (only used for global arrays) :to: :cpp:func:`lammps_extract_fix` :r data: LAMMPS data (for global data) or a pointer to LAMMPS data (for per-atom or local data). The left-hand side of the assignment should be of type ``REAL(c_double)`` and have appropriate rank (i.e., ``DIMENSION(:)`` if expecting per-atom or local vector data and ``DIMENSION(:,:)`` if expecting per-atom or local array data). If expecting local or per-atom data, it should have the ``POINTER`` attribute, but if expecting global data, it should be an ordinary (non-``POINTER``) variable. :rtype data: polymorphic .. admonition:: Array index order Two-dimensional global, per-atom, or local array data from :f:func:`extract_fix` will be **transposed** from equivalent arrays in C (or in the ordinary LAMMPS interface accessed through thermodynamic output), and they will be indexed from 1, not 0. This is true even for global data, which are returned as scalars---this is done primarily so the interface is consistent, as there is no choice but to transpose the indices for per-atom or local array data. See the similar note under :f:func:`extract_atom` for further details. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1337: ERROR: Unknown directive type "f:function". .. f:function:: extract_variable(name[,group]) This function calls :cpp:func:`lammps_extract_variable` and returns a scalar, vector, or string containing the value of the variable identified by *name*. When the variable is an *equal*-style variable (or one compatible with that style such as *internal*), the variable is evaluated and the corresponding value returned. When the variable is an *atom*-style variable, the variable is evaluated and a vector of values is returned. With all other variables, a string is returned. The *group* argument is only used for *atom* style variables and is ignored otherwise. If *group* is absent for *atom*-style variables, the group is assumed to be "all". .. versionadded:: 3Nov2022 This function returns the values of the variables, not pointers to them. Vectors pointing to *atom*-style variables should be of type ``REAL(c_double)``, be of rank 1 (i.e., ``DIMENSION(:)``), and have the ``ALLOCATABLE`` attribute. .. note:: Unlike the C library interface, the Fortran interface does not require you to deallocate memory when you are through; this is done for you, behind the scenes. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double) :: area ! more code to set up, etc. lmp%command('variable A equal lx*ly') ! more code area = lmp%extract_variable("A") will extract the *x*\ --*y* cross-sectional area of the simulation into the variable *area*. :p character(len=\*) name: variable name to evaluate :o character(len=\*) group [optional]: group for which to extract per-atom data (if absent, use "all") :to: :cpp:func:`lammps_extract_variable` :r data: scalar of type ``REAL(c_double)`` (for *equal*-style variables and others that are *equal*-compatible), vector of type ``REAL(c_double), DIMENSION(:), ALLOCATABLE`` for *atom*- or *vector*-style variables, or ``CHARACTER(LEN=*)`` for *string*-style and compatible variables. Strings whose length is too short to hold the result will be truncated. Allocatable strings must be allocated before this function is called; see note at :f:func:`extract_global` regarding allocatable strings. Allocatable arrays (for *atom*- and *vector*-style data) will be reallocated on assignment. :rtype data: polymorphic WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1401: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_variable(name, str) Set the value of a string-style variable. .. deprecated:: 7Feb2024 This function assigns a new value from the string *str* to the string-style variable *name*\ . If *name* does not exist or is not a string-style variable, an error is generated. .. warning:: This subroutine is deprecated and :f:subr:`set_string_variable` should be used instead. :p character(len=*) name: name of the variable :p character(len=*) str: new value to assign to the variable :to: :cpp:func:`lammps_set_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1422: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_string_variable(name, str) Set the value of a string-style variable. .. versionadded:: 7Feb2024 This function assigns a new value from the string *str* to the string-style variable *name*\ . If *name* does not exist or is not a string-style variable, an error is generated. :p character(len=*) name: name of the variable :p character(len=*) str: new value to assign to the variable :to: :cpp:func:`lammps_set_string_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1438: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_internal_variable(name, val) Set the value of a internal-style variable. .. versionadded:: 7Feb2024 This function assigns a new value from the floating-point number *val* to the internal-style variable *name*\ . If *name* does not exist or is not an internal-style variable, an error is generated. :p character(len=*) name: name of the variable :p read(c_double) val: new value to assign to the variable :to: :cpp:func:`lammps_set_internal_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1454: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms(name, count, data) This function calls :cpp:func:`lammps_gather_atoms` to gather the named atom-based entity for all atoms on all processors and return it in the vector *data*. The vector *data* will be ordered by atom ID, which requires consecutive atom IDs (1 to *natoms*). .. versionadded:: 3Nov2022 If you need a similar array but have non-consecutive atom IDs, see :f:func:`gather_atoms_concat`; for a similar array but for a subset of atoms, see :f:func:`gather_atoms_subset`. The *data* array will be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count* :math:`\times` *natoms*), as queried by :f:func:`get_natoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms` .. note:: If you want data from this function to be accessible as a two-dimensional array, you can declare a rank-2 pointer and reassign it, like so: .. code-block:: fortran USE, INTRINSIC :: ISO_C_BINDING USE LIBLAMMPS TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), ALLOCATABLE, TARGET :: xdata REAL(c_double), DIMENSION(:,:), POINTER :: x ! other code to set up, etc. CALL lmp%gather_atoms('x',3,xdata) x(1:3,1:size(xdata)/3) => xdata You can then access the *y*\ -component of atom 3 with ``x(2,3)``. See the note about array index order at :f:func:`extract_atom`. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1511: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms_concat(name, count, data) This function calls :cpp:func:`lammps_gather_atoms_concat` to gather the named atom-based entity for all atoms on all processors and return it in the vector *data*. .. versionadded:: 3Nov2022 The vector *data* will not be ordered by atom ID, and there is no restriction on the IDs being consecutive. If you need the IDs, you can do another :f:func:`gather_atoms_concat` with *name* set to ``id``. If you need a similar array but have consecutive atom IDs, see :f:func:`gather_atoms`; for a similar array but for a subset of atoms, see :f:func:`gather_atoms_subset`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms_concat` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1545: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms_subset(name, count, ids, data) This function calls :cpp:func:`lammps_gather_atoms_subset` to gather the named atom-based entity for the atoms in the array *ids* from all processors and return it in the vector *data*. .. versionadded:: 3Nov2022 This subroutine gathers data for the requested atom IDs and stores them in a one-dimensional allocatable array. The data will be ordered by atom ID, but there is no requirement that the IDs be consecutive. If you wish to return a similar array for *all* the atoms, use :f:func:`gather_atoms` or :f:func:`gather_atoms_concat`. The *data* array will be in groups of *count* values, sorted by atom ID in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and *ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57), *x*\ (1,210), :math:`\dots`]; *ids* must be provided by the user, and *data* must be of rank 1 (i.e., ``DIMENSION(:)``) and have the ``ALLOCATABLE`` attribute. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms to be gathered :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1587: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_atoms(name, data) This function calls :cpp:func:`lammps_scatter_atoms` to scatter the named atom-based entities in *data* to all processors. .. versionadded:: 3Nov2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to all atoms on all processors. The data must be ordered by atom ID, with the requirement that the IDs be consecutive. Use :f:func:`scatter_atoms_subset` to scatter data for some (or all) atoms, in any order. The *data* array needs to be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length *natoms* or 3\*\ *natoms*. :p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*) :p data: per-atom values packed in a one-dimensional array containing the data to be scattered. This array must have length *natoms* (e.g., for *type* or *charge*) or length *natoms*\ :math:`{}\times 3` (e.g., for *x* or *f*). The array *data* must be rank 1 (i.e., ``DIMENSION(:)``) and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *x* or *charge* or *f*). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter_atoms` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1618: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_atoms_subset(name, ids, data) This function calls :cpp:func:`lammps_scatter_atoms_subset` to scatter the named atom-based entities in *data* to all processors. .. versionadded:: 3Nov2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to a subset of atoms on all processors. The array *data* contains data associated with atom IDs, but there is no requirement that the IDs be consecutive, as they are provided in a separate array, *ids*. Use :f:func:`scatter_atoms` to scatter data for all atoms, in order. The *data* array needs to be organized in groups of 1 or 3 values, depending on which quantity is being scattered, with the groups in the same order as the array *ids*. For example, if you want *data* to be the array [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57)], then *ids* would be [1, 100, 57] and *name* would be *x*. :p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*) :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms being scattered :p data: per-atom values packed into a one-dimensional array containing the data to be scattered. This array must have either the same length as *ids* (for *mask*, *type*, etc.) or three times its length (for *x*, *f*, etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter_atoms_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1652: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_bonds(data) Gather type and constituent atom information for all bonds. .. versionadded:: 3Nov2022 This function copies the list of all bonds into an allocatable array. The array will be filled with (bond type, bond atom 1, bond atom 2) for each bond. The array is allocated to the right length (i.e., three times the number of bonds). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM bonds USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: bonds INTEGER(c_int), DIMENSION(:,:), POINTER :: bonds_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create bonds, etc. CALL lmp%gather_bonds(bonds) bonds_array(1:3, 1:SIZE(bonds)/3) => bonds DO i = 1, SIZE(bonds)/3 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4)') 'bond', bonds_array(1,i), & '; type = ', bonds_array(2,i), bonds_array(3,i) END DO END PROGRAM bonds :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_bonds` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1697: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_angles(data) Gather type and constituent atom information for all angles. .. versionadded:: 8Feb2023 This function copies the list of all angles into an allocatable array. The array will be filled with (angle type, angle atom 1, angle atom 2, angle atom 3) for each angle. The array is allocated to the right length (i.e., four times the number of angles). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM angles USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: angles INTEGER(c_int), DIMENSION(:,:), POINTER :: angles_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create angles, etc. CALL lmp%gather_angles(angles) angles_array(1:4, 1:SIZE(angles)/4) => angles DO i = 1, SIZE(angles)/4 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4)') 'angle', angles_array(1,i), & '; type = ', angles_array(2,i), angles_array(3,i), angles_array(4,i) END DO END PROGRAM angles :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_angles` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1742: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather(self, name, count, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes, in order by atom ID. .. versionadded:: 22Dec2022 This subroutine gathers data from all processes and stores them in a one-dimensional allocatable array. The array *data* will be ordered by atom ID, which requires consecutive IDs (1 to *natoms*\ ). If you need a similar array but for non-consecutive atom IDs, see :cpp:func:`lammps_gather_concat`; for a similar array but for a subset of atoms, see :cpp:func:`lammps_gather_subset`. The *data* array will be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x*, then *data* is [x(1,1), x(2,1), x(3,1), x(1,2), x(2,2), x(3,2), x(1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count*\ :math:`{}\times{}`\ *natoms*), as queried by :f:func:`get_natoms`. This function will return an error if fix or compute data are requested and the fix or compute ID given does not have per-atom data. See the note about re-interpreting the vector as a matrix at :f:subr:`gather_atoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) count: number of per-atom values (e.g., 1 for *type* or *charge*, 3 for *x* or *f*); use *count* = 3 with *image* if you want the image flags unpacked into (*x*,\ *y*,\ *z*) components. :p real(c_double) data [dimension(:),allocatable]: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. :to: :cpp:func:`lammps_gather` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1784: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_dihedrals(data) Gather type and constituent atom information for all dihedrals. .. versionadded:: 8Feb2023 This function copies the list of all dihedrals into an allocatable array. The array will be filled with (dihedral type, dihedral atom 1, dihedral atom 2, dihedral atom 3, dihedral atom 4) for each dihedral. The array is allocated to the right length (i.e., five times the number of dihedrals). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM dihedrals USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: dihedrals INTEGER(c_int), DIMENSION(:,:), POINTER :: dihedrals_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create dihedrals, etc. CALL lmp%gather_dihedrals(dihedrals) dihedrals_array(1:5, 1:SIZE(dihedrals)/5) => dihedrals DO i = 1, SIZE(dihedrals)/5 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'dihedral', dihedrals_array(1,i), & '; type = ', dihedrals_array(2,i), dihedrals_array(3,i), dihedrals_array(4,i), dihedrals_array(5,i) END DO END PROGRAM dihedrals :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_dihedrals` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1830: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_impropers(data) Gather type and constituent atom information for all impropers. .. versionadded:: 8Feb2023 This function copies the list of all impropers into an allocatable array. The array will be filled with (improper type, improper atom 1, improper atom 2, improper atom 3, improper atom 4) for each improper. The array is allocated to the right length (i.e., five times the number of impropers). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM impropers USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: impropers INTEGER(c_int), DIMENSION(:,:), POINTER :: impropers_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create impropers, etc. CALL lmp%gather_impropers(impropers) impropers_array(1:5, 1:SIZE(impropers)/5) => impropers DO i = 1, SIZE(impropers)/5 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'improper', impropers_array(1,i), & '; type = ', impropers_array(2,i), impropers_array(3,i), impropers_array(4,i), impropers_array(5,i) END DO END PROGRAM impropers :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_impropers` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1876: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_concat(self, name, count, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes, unordered. .. versionadded:: 22Dec2022 This subroutine gathers data for all atoms and stores them in a one-dimensional allocatable array. The data will be a concatenation of chunks from each processor's owned atoms, in whatever order the atoms are in on each processor. This process has no requirement that the atom IDs be consecutive. If you need the ID of each atom, you can do another call to either :f:subr:`gather_atoms_concat` or :f:subr:`gather_concat` with *name* set to ``id``. If you have consecutive IDs and want the data to be in order, use :f:subr:`gather`; for a similar array but for a subset of atoms, use :f:subr:`gather_subset`. The *data* array will be in groups of *count* values, with *natoms* groups total, but not in order by atom ID (e.g., if *name* is *x* and *count* is 3, then *data* might be something like [x(1,11), x(2,11), x(3,11), x(1,3), x(2,3), x(3,3), x(1,5), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count* :math:`\times` *natoms*), as queried by :f:func:`get_natoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_concat` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1922: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_subset(name, count, ids, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes for a subset of atoms. .. versionadded:: 22Dec2022 This subroutine gathers data for the requested atom IDs and stores them in a one-dimensional allocatable array. The data will be ordered by atom ID, but there is no requirement that the IDs be consecutive. If you wish to return a similar array for *all* the atoms, use :f:subr:`gather` or :f:subr:`gather_concat`. The *data* array will be in groups of *count* values, sorted by atom ID in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and *ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57), *x*\ (1,210), :math:`\dots`]); *ids* must be provided by the user, and *data* must have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If *data* is already allocated, it will be reallocated to fit the length of the incoming data. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: quantity to be scattered :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms being scattered (e.g., "x" or "f" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{} > 1`) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: per-atom values packed into a one-dimensional array containing the data to be scattered. This array must have the ``ALLOCATABLE`` attribute and will be allocated either to the same length as *ids* (for *mask*, *type*, etc.) or to three times its length (for *x*, *f*, etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*). :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1969: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter(name, data) This function calls :cpp:func:`lammps_scatter` to scatter the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entity in *data* to all processes. .. versionadded:: 22Dec2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to all atoms on all processes. The data must be ordered by atom ID, with the requirement that the IDs be consecutive. Use :f:subr:`scatter_subset` to scatter data for some (or all) atoms, unordered. The *data* array needs to be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length (*count* :math:`\times` *natoms*). This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=*) name: desired quantity (e.g., "x" or "f" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{} > 1`) :p data: per-atom values packed in a one-dimensional array; *data* should be of type ``INTEGER(c_int)`` or ``REAL(c_double)``, depending on the type of data being scattered, and be of rank 1 (i.e., ``DIMENSION(:)``). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2002: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_subset(name, ids, data) This function calls :cpp:func:`lammps_scatter_subset` to scatter the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities in *data* from a subset of atoms to all processes. .. versionadded:: 22Dec2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to a subset of atoms on all processes. The array *data* contains data associated with atom IDs, but there is no requirement that the IDs be consecutive, as they are provided in a separate array. Use :f:subr:`scatter` to scatter data for all atoms, in order. The *data* array needs to be organized in groups of *count* values, with the groups in the same order as the array *ids*. For example, if you want *data* to be the array [x(1,1), x(2,1), x(3,1), x(1,100), x(2,100), x(3,100), x(1,57), x(2,57), x(3,57)], then *count* = 3 and *ids* = [1, 100, 57]. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) ids: list of atom IDs to scatter data for :p polymorphic data [dimension(:)]: per-atom values packed in a one-dimensional array of length *size(ids)* \* *count*. :to: :cpp:func:`lammps_scatter_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2035: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: create_atoms([id,] type, x, [v,] [image,] [bexpand]) This method calls :cpp:func:`lammps_create_atoms` to create additional atoms from a given list of coordinates and a list of atom types. Additionally, the atom IDs, velocities, and image flags may be provided. .. versionadded:: 3Nov2022 :p integer(c_int) type [dimension(N)]: vector of :math:`N` atom types (required/see note below) :p real(c_double) x [dimension(3N)]: vector of :math:`3N\ x/y/z` positions of the new atoms, arranged as :math:`[x_1,y_1,z_1,x_2,y_2,\dotsc]` (required/see note below) :o integer(kind=\*) id [dimension(N),optional]: vector of :math:`N` atom IDs; if absent, LAMMPS will generate them for you. \*The ``KIND`` parameter should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which case it should be ``c_int64_t``. :o real(c_double) v [dimension(3N),optional]: vector of :math:`3N` *x*\ /*y*\ /*z* velocities of the new atoms, arranged as :math:`[v_{1,x},v_{1,y},v_{1,z},v_{2,x}, \dotsc]`; if absent, they will be set to zero :o integer(kind=\*) image [dimension(N),optional]: vector of :math:`N` image flags; if absent, they are set to zero. \*The ``KIND`` parameter should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which case it should be ``c_int64_t``. See note below. :o bexpand: if ``.TRUE.``, atoms outside of shrink-wrap boundaries will be created, not dropped, and the box dimensions will be extended. Default is ``.FALSE.`` :otype bexpand: logical,optional :to: :cpp:func:`lammps_create_atoms` .. note:: The *type* and *x* arguments are required, but they are declared ``OPTIONAL`` in the module because making them mandatory would require *id* to be present as well. To have LAMMPS generate the ids for you, use a call something like .. code-block:: fortran lmp%create_atoms(type=new_types, x=new_xs) .. note:: When LAMMPS has been compiled with ``-DLAMMPS_BIGBIG``, it is not possible to include the *image* parameter but omit the *id* parameter. Either *id* must be present, or both *id* and *image* must be absent. This is required because having all arguments be optional in both generic functions creates an ambiguous interface. This limitation does not exist if LAMMPS was not compiled with ``-DLAMMPS_BIGBIG``. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2088: ERROR: Unknown directive type "f:function". .. f:function:: find_pair_neighlist(style[, exact][, nsub][, reqid]) Find index of a neighbor list requested by a pair style. .. versionadded:: 3Nov2022 This function determines which of the available neighbor lists for pair styles matches the given conditions. It first matches the style name. If *exact* is ``.TRUE.``, the name must match exactly; if ``.FALSE.``, a regular expression or sub-string match is done. If the pair style is *hybrid* or *hybrid/overlay*, the style is matched against the sub-styles instead. If the same pair style is used multiple times as a sub-style, the *nsub* argument must be :math:`> 0`; this argument represents the *n*\ th instance of the sub-style (same as for the :doc:`pair_coeff ` command, for example). In that case, *nsub*\ :math:`{} = 0` will not produce a match, and the function will return :math:`-1`. The final condition to be checked is the request ID (\ *reqid*\ ). This will usually be zero, but some pair styles request multiple neighbor lists and set the request ID to a value greater than zero. :p character(len=\*) style: String used to search for pair style instance. :o exact: Flag to control whether style should match exactly or only a regular expression/sub-string match is applied. Default: ``.TRUE.``. :otype exact: logical,optional :o integer(c_int) nsub [optional]: Match *nsub*\ th hybrid sub-style instance of the same style. Default: 0. :o integer(c_int) reqid [optional]: Request ID to identify the neighbor list in case there are multiple requests from the same pair style instance. Default: 0. :to: :cpp:func:`lammps_find_pair_neighlist` :r integer(c_int) index: Neighbor list index if found, otherwise :math:`-1`. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2124: ERROR: Unknown directive type "f:function". .. f:function:: find_fix_neighlist(id[, reqid]) Find index of a neighbor list requested by a fix. .. versionadded:: 3Nov2022 The neighbor list request from a fix is identified by the fix ID and the request ID. The request ID is typically zero, but will be :math:`>0` for fixes with multiple neighbor list requests. :p character(len=\*) id: Identifier of fix instance :o integer(c_int) reqid [optional]: request ID to identify the neighbor list in cases in which there are multiple requests from the same fix. Default: 0. :to: :cpp:func:`lammps_find_fix_neighlist` :r index: neighbor list index if found, otherwise :math:`-1` :rtype index: integer(c_int) WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2144: ERROR: Unknown directive type "f:function". .. f:function:: find_compute_neighlist(id[, reqid]) Find index of a neighbor list requested by a compute. .. versionadded:: 3Nov2022 The neighbor list request from a compute is identified by the compute ID and the request ID. The request ID is typically zero, but will be :math:`> 0` in case a compute has multiple neighbor list requests. :p character(len=\*) id: Identifier of compute instance. :o integer(c_int) reqid [optional]: request ID to identify the neighbor list in cases in which there are multiple requests from the same compute. Default: 0. :to: :cpp:func:`lammps_find_compute_neighlist` :r index: neighbor list index if found, otherwise :math:`-1`. :rtype index: integer(c_int) WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2164: ERROR: Unknown directive type "f:function". .. f:function:: neighlist_num_elements(idx) Return the number of entries in the neighbor list with the given index. .. versionadded:: 3Nov2022 :p integer(c_int) idx: neighbor list index :to: :cpp:func:`lammps_neighlist_num_elements` :r inum: number of entries in neighbor list, or :math:`-1` if *idx* is not a valid index. :rtype inum: integer(c_int) :to: :cpp:func:`lammps_neighlist_num_elements` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2179: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: neighlist_element_neighbors(idx, element, iatom, neighbors) Return atom local index, number of neighbors, and array of neighbor local atom indices of a neighbor list entry. .. versionadded:: 3Nov2022 :p integer(c_int) idx: index of this neighbor list in the list of all neighbor lists :p integer(c_int) element: index of this neighbor list entry :p integer(c_int) iatom: local atom index (i.e., in the range [1,nlocal+nghost]; -1 if invalid or element value :p integer(c_int) neighbors [dimension(:),pointer]: pointer to an array of neighboring atom local indices :to: :cpp:func:`lammps_neighlist_element_neighbors` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2197: ERROR: Unknown directive type "f:function". .. f:function:: version() This method returns the numeric LAMMPS version like :cpp:func:`lammps_version` does. :to: :cpp:func:`lammps_version` :r version: LAMMPS version :rtype version: integer WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2208: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_os_info(buffer) This function can be used to retrieve detailed information about the hosting operating system and compiler/runtime environment. .. versionadded:: 3Nov2022 A suitable buffer has to be provided. The assembled text will be truncated so as not to overflow this buffer. The string is typically a few hundred bytes long. :p character(len=\*) buffer: string that will house the information. :to: :cpp:func:`lammps_get_os_info` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2225: ERROR: Unknown directive type "f:function". .. f:function:: config_has_mpi_support() This function is used to query whether LAMMPS was compiled with a real MPI library or in serial. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_config_has_mpi_support` :r has_mpi: ``.FALSE.`` when compiled with STUBS, ``.TRUE.`` if complied with MPI. :rtype has_mpi: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2239: ERROR: Unknown directive type "f:function". .. f:function:: config_has_gzip_support() Check if the LAMMPS library supports reading or writing compressed files via a pipe to gzip or similar compression programs. .. versionadded:: 3Nov2022 Several LAMMPS commands (e.g., :doc:`read_data`, :doc:`write_data`, :doc:`dump styles atom, custom, and xyz `) support reading and writing compressed files via creating a pipe to the ``gzip`` program. This function checks whether this feature was :ref:`enabled at compile time `. It does **not** check whether ``gzip`` or any other supported compression programs themselves are installed and usable. :to: :cpp:func:`lammps_config_has_gzip_support` :r has_gzip: :rtype has_gzip: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2259: ERROR: Unknown directive type "f:function". .. f:function:: config_has_png_support() Check if the LAMMPS library supports writing PNG format images. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style image ` supports writing multiple image file formats. Most of them, however, need support from an external library, and using that has to be :ref:`enabled at compile time `. This function checks whether support for the `PNG image file format `_ is available in the current LAMMPS library. :to: :cpp:func:`lammps_config_has_png_support` :r has_png: :rtype has_png: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2278: ERROR: Unknown directive type "f:function". .. f:function:: config_has_jpeg_support() Check if the LAMMPS library supports writing JPEG format images. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style image ` supports writing multiple image file formats. Most of them, however, need support from an external library, and using that has to be :ref:`enabled at compile time `. This function checks whether support for the `JPEG image file format `_ is available in the current LAMMPS library. :to: :cpp:func:`lammps_config_has_jpeg_support` :r has_jpeg: :rtype has_jpeg: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2296: ERROR: Unknown directive type "f:function". .. f:function:: config_has_ffmpeg_support() Check if the LAMMPS library supports creating movie files via a pipe to ffmpeg. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style movie ` supports generating movies from images on-the-fly via creating a pipe to the `ffmpeg `_ program. This function checks whether this feature was :ref:`enabled at compile time `. It does **not** check whether the ``ffmpeg`` itself is installed and usable. :to: :cpp:func:`lammps_config_has_ffmpeg_support` :r has_ffmpeg: :rtype has_ffmpeg: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2316: ERROR: Unknown directive type "f:function". .. f:function:: config_has_exceptions() Check whether LAMMPS errors will throw C++ exceptions. .. versionadded:: 3Nov2022 When using the library interface, the library interface functions will "catch" exceptions, and then the error status can be checked by calling :f:func:`has_error`. The most recent error message can be retrieved via :f:func:`get_last_error_message`. This allows to restart a calculation or delete and recreate the LAMMPS instance when a C++ exception occurs. One application of using exceptions this way is the :ref:`lammps_shell`. :to: :cpp:func:`lammps_config_has_exceptions` :r has_exceptions: :rtype has_exceptions: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2336: ERROR: Unknown directive type "f:function". .. f:function:: config_has_package(name) Check whether a specific package has been included in LAMMPS .. versionadded:: 3Nov2022 This function checks whether the LAMMPS library in use includes the specific :doc:`LAMMPS package ` provided as argument. :to: :cpp:func:`lammps_config_has_package` :r has_package: :rtype has_package: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2351: ERROR: Unknown directive type "f:function". .. f:function:: config_package_count() Count the number of installed packages in the LAMMPS library. .. versionadded:: 3Nov2022 This function counts how many :doc:`LAMMPS packages ` are included in the LAMMPS library in use. It directly calls the C library function :cpp:func:`lammps_config_package_count`. :to: :cpp:func:`lammps_config_package_count` :r integer(c_int) npackages: number of packages installed WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2366: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: config_package_name(idx, buffer) Get the name of a package in the list of installed packages in the LAMMPS library. .. versionadded:: 3Nov2022 This subroutine copies the name of the package with the index *idx* into the provided string *buffer*. If the name of the package exceeds the length of the buffer, it will be truncated accordingly. If the index is out of range, *buffer* is set to an empty string. :p integer(c_int) idx: index of the package in the list of included packages :math:`(0 \le idx < \text{package count})` :p character(len=\*) buffer: string to hold the name of the package :to: :cpp:func:`lammps_config_package_name` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2385: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: installed_packages(package[, length]) Obtain a list of the names of enabled packages in the LAMMPS shared library and store it in *package*. .. versionadded:: 3Nov2022 This function is analogous to the :py:meth:`installed_packages ` function in the Python API. The optional argument *length* sets the length of each string in the vector *package* (default: 31). :p character(len=:) package [dimension(:),allocatable]: list of packages; *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``) with allocatable length. :o length: length of each string in the list. Default: 31. :otype length: integer,optional :to: :cpp:func:`lammps_config_package_count` :to: :cpp:func:`lammps_config_package_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2407: ERROR: Unknown directive type "f:function". .. f:function:: config_accelerator(package, category, setting) This function calls :cpp:func:`lammps_config_accelerator` to check the availability of compile time settings of included :doc:`accelerator packages ` in LAMMPS. .. versionadded:: 3Nov2022 Supported packages names are "GPU", "KOKKOS", "INTEL", and "OPENMP". Supported categories are "api" with possible settings "cuda", "hip", "phi", "pthreads", "opencl", "openmp", and "serial"; and "precision" with possible settings "double", "mixed", and "single". :p character(len=\*) package: string with the name of the accelerator package :p character(len=\*) category: string with the name of the setting :p character(len=\*) setting: string with the name of the specific setting :to: :cpp:func:`lammps_config_accelerator` :r available: ``.TRUE.`` if the combination of package, category, and setting is available, otherwise ``.FALSE.``. :rtype available: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2432: ERROR: Unknown directive type "f:function". .. f:function:: has_gpu_device() Checks for the presence of a viable GPU package device. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_has_gpu_device`, which checks at runtime whether an accelerator device is present that can be used with the :doc:`GPU package `. More detailed information about the available device or devices can be obtained by calling the :f:subr:`get_gpu_device_info` subroutine. :to: :cpp:func:`lammps_has_gpu_device` :r available: ``.TRUE.`` if a viable device is available, ``.FALSE.`` if not. :rtype available: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2452: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_gpu_device_info(buffer) Get GPU package device information. .. versionadded:: 3Nov2022 Calls :cpp:func:`lammps_get_gpu_device_info` to retrieve detailed information about any accelerator devices that are viable for use with the :doc:`GPU package `. It will fill *buffer* with a string that is equivalent to the output of the ``nvc_get_device`` or ``ocl_get_device`` or ``hip_get_device`` tools that are compiled alongside LAMMPS if the GPU package is enabled. A suitable-length Fortran string has to be provided. The assembled text will be truncated so as not to overflow this buffer. This string can be several kilobytes long if multiple devices are present. :p character(len=\*) buffer: string into which to copy the information. :to: :cpp:func:`lammps_get_gpu_device_info` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2474: ERROR: Unknown directive type "f:function". .. f:function:: has_style(category, name) Check whether a specific style has been included in LAMMPS. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_has_style` to check whether the LAMMPS library in use includes the specific style *name* associated with a specific *category* provided as arguments. Please see :cpp:func:`lammps_has_style` for a list of valid categories. :p character(len=\*) category: category of the style :p character(len=\*) name: name of the style :to: :cpp:func:`lammps_has_style` :r has_style: ``.TRUE.`` if included, ``.FALSE.`` if not. :rtype has_style: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2493: ERROR: Unknown directive type "f:function". .. f:function:: style_count(category) Count the number of styles of *category* in the LAMMPS library. .. versionadded:: 3Nov2022 This function counts how many styles in the provided *category* are included in the LAMMPS library currently in use. Please see :cpp:func:`lammps_has_style` for a list of valid categories. :p character(len=\*) category: category of styles to count :to: :cpp:func:`lammps_style_count` :r integer(c_int) count: number of styles in *category* WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2509: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: style_name(category, idx, buffer) Look up the name of a style by index in the list of styles of a given category in the LAMMPS library. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_style_name` and copies the name of the *category* style with index *idx* into the provided string *buffer*. The length of *buffer* must be long enough to contain the name of the style; if it is too short, the name will be truncated accordingly. If *idx* is out of range, *buffer* will be the empty string and a warning will be issued. :p character(len=\*) category: category of styles :p integer(c_int) idx: index of the style in the list of *category* styles :math:`(1 \leq idx \leq \text{style count})` :p character(len\*) buffer: string buffer to copy the name of the style into :to: :cpp:func:`lammps_style_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2532: ERROR: Unknown directive type "f:function". .. f:function:: has_id(category, name) This function checks if the current LAMMPS instance a *category* ID of the given *name* exists. Valid categories are: *compute*\ , *dump*\ , *fix*\ , *group*\ , *molecule*\ , *region*\ , and *variable*\ . .. versionadded:: 3Nov2022 :p character(len=\*) category: category of the ID :p character(len=\*) name: name of the ID :to: :cpp:func:`lammps_has_id` :r has_id: ``.TRUE.`` if *category* style *name* exists, ``.FALSE.`` if not. :rtype has_id: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2548: ERROR: Unknown directive type "f:function". .. f:function:: id_count(category) This function counts how many IDs in the provided *category* are defined in the current LAMMPS instance. Please see :f:func:`has_id` for a list of valid categories. .. versionadded:: 3Nov2022 :p character(len=\*) category: category of the ID :to: :cpp:func:`lammps_id_count` :r count: number of IDs in *category* :rtype count: integer(c_int) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2563: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: id_name(category, idx, buffer) Look up the name of an ID by index in the list of IDs of a given category. .. versionadded:: 3Nov2022 This function copies the name of the *category* ID with the index *idx* into the provided string *buffer*\ . The length of the buffer must be long enough to hold the string; if the name of the style exceeds the length of the buffer, it will be truncated accordingly. If *buffer* is ``ALLOCATABLE``, it must be allocated *before* the function is called. If *idx* is out of range, *buffer* is set to an empty string and a warning is issued. :p character(len=\*) category: category of IDs :p integer(c_int) idx: index of the ID in the list of *category* styles (:math:`0 \leq idx < count`) :p character(len=\*) buffer: string into which to copy the name of the style :to: :cpp:func:`lammps_id_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2586: ERROR: Unknown directive type "f:function". .. f:function:: plugin_count() This function counts the number of loaded plugins. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_plugin_count` :r n: number of loaded plugins :rtype n: integer(c_int) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2598: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: plugin_name(idx, stylebuf, namebuf) Look up the style and name of a plugin by its index in the list of plugins. .. versionadded:: 3Nov2022 This function copies the name of the *style* plugin with the index *idx* into the provided C-style string buffer. The length of the buffer must be provided as *buf_size* argument. If the name of the style exceeds the length of the buffer, it will be truncated accordingly. If the index is out of range, both strings are set to the empty string and a warning is printed. :p integer(c_int) idx: index of the plugin in the list all or *style* plugins :p character(len=\*) stylebuf: string into which to copy the style of the plugin :p character(len=\*) namebuf: string into which to copy the style of the plugin :to: :cpp:func:`lammps_plugin_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2621: ERROR: Unknown directive type "f:function". .. f:function:: encode_image_flags(ix, iy, iz) Encodes three integer image flags into a single imageint. .. versionadded:: 3Nov2022 This function performs the bit-shift, addition, and bit-wise OR operations necessary to combine the values of three integers representing the image flags in the :math:`x`-, :math:`y`-, and :math:`z`-directions. Unless LAMMPS is compiled with ``-DLAMMPS_BIGBIG``, those integers are limited to 10-bit signed integers :math:`[-512,512)`. If ``-DLAMMPS_BIGBIG`` was used when compiling, then the return value is of kind ``c_int64_t`` instead of kind ``c_int``, and the valid range for the individual image flags becomes :math:`[-1048576,1048575)` (i.e., the range of a 21-bit signed integer). There is no check on whether the arguments conform to these requirements; values out of range will simply be wrapped back into the interval. :p integer(c_int) ix: image flag in :math:`x`-direction :p integer(c_int) iy: image flag in :math:`y`-direction :p integer(c_int) iz: image flag in :math:`z`-direction :r integer(kind=\*) imageint: encoded image flag. \*The ``KIND`` parameter is ``c_int`` unless LAMMPS was built with ``-DLAMMPS_BIGBIG``, in which case it is ``c_int64_t``. .. note:: The fact that the programmer does not know the ``KIND`` parameter of the return value until compile time means that it is impossible to define an interface that works for both sizes of ``imageint``. One side effect of this is that you must assign the return value of this function to a variable; it cannot be used as the argument to another function or as part of an array constructor. For example, .. code-block:: fortran my_images = [lmp%encode_image_flags(0,0,0), lmp%encode_image_flags(1,0,0)] will *not* work; instead, do something like .. code-block:: fortran my_images(1) = lmp%encode_image_flags(0,0,0) my_images(2) = lmp%encode_image_flags(1,0,0) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2667: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: decode_image_flags(image, flags) This function does the reverse operation of :f:func:`encode_image_flags`: it takes the image flag and performs the bit-shift and bit-masking operations to decode it and stores the resulting three integers into the array *flags*. .. versionadded:: 3Nov2022 :p integer(kind=\*) image: encoded image flag. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, ``c_int64_t``. Kind compatibility is checked at run-time. :p integer(c_int) flags [dimension(3)]: three-element vector where the decoded image flags will be stored. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2684: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_fix_external_callback(id, callback, caller) Set the callback function for a :doc:`fix external ` instance with the given ID. .. versionadded:: 22Dec2022 Fix :doc:`external ` allows programs that are running LAMMPS through its library interface to modify certain LAMMPS properties on specific time steps, similar to the way other fixes do. This subroutine sets the callback function for use with the "pf/callback" mode. The function should have Fortran language bindings with the following interface, which depends on how LAMMPS was compiled: .. code-block:: fortran ABSTRACT INTERFACE SUBROUTINE external_callback(caller, timestep, ids, x, fexternal) USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t CLASS(*), INTENT(INOUT) :: caller INTEGER(c_bigint), INTENT(IN) :: timestep INTEGER(c_tagint), DIMENSION(:), INTENT(IN) :: ids REAL(c_double), DIMENSION(:,:), INTENT(IN) :: x REAL(c_double), DIMENSION(:,:), INTENT(OUT) :: fexternal END SUBROUTINE external_callback END INTERFACE where ``c_bigint`` is ``c_int`` if ``-DLAMMPS_SMALLSMALL`` was used and ``c_int64_t`` otherwise; and ``c_tagint`` is ``c_int64_t`` if ``-DLAMMPS_BIGBIG`` was used and ``c_int`` otherwise. The argument *caller* to :f:subr:`set_fix_external_callback` is unlimited polymorphic (i.e., it can be any Fortran object you want to pass to the calling function) and will be available as the first argument to the callback function. It can be your LAMMPS instance, which you might need if the callback function needs access to the library interface. The argument must be a scalar; to pass non-scalar data, wrap those data in a derived type and pass an instance of the derived type to *caller*. The array *ids* is an array of length *nlocal* (as accessed from the :cpp:class:`Atom` class or through :f:func:`extract_global`). The arrays *x* and *fexternal* are :math:`3 \times {}`\ *nlocal* arrays; these are transposed from what they would look like in C (see note about array index order at :f:func:`extract_atom`). The callback mechanism is one of two ways that forces can be applied to a simulation with the help of :doc:`fix external `. The alternative is *array* mode, where one calls :f:func:`fix_external_get_force`. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and couple it with external programs. :p character(len=*) id: ID of :doc:`fix external ` instance :p callback: subroutine :doc:`fix external ` should call :ptype callback: external :p class(*) caller [optional]: object you wish to pass to the callback procedure (must be a scalar; see note) :to: :cpp:func:`lammps_set_fix_external_callback` .. note:: The interface for your callback function must match types precisely with the abstract interface block given above. **The compiler probably will not be able to check this for you.** In particular, the first argument ("caller") must be of type ``CLASS(*)`` or you will probably get a segmentation fault or at least a misinterpretation of whatever is in memory there. You can resolve the object using the ``SELECT TYPE`` construct. An example callback function (assuming LAMMPS was compiled with ``-DLAMMPS_SMALLBIG``) that applies something akin to Hooke's Law (with each atom having a different *k* value) is shown below. .. code-block:: fortran MODULE stuff USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : error_unit IMPLICIT NONE TYPE shield REAL(c_double), DIMENSION(:,:), ALLOCATABLE :: k ! assume k gets allocated to dimension(3,nlocal) at some point ! and assigned values END TYPE shield SUBROUTINE my_callback(caller, timestep, ids, x, fexternal) CLASS(*), INTENT(INOUT) :: caller INTEGER(c_int), INTENT(IN) :: timestep INTEGER(c_int64_t), INTENT(IN) :: ids REAL(c_double), INTENT(IN) :: x(:,:) REAL(c_double), INTENT(OUT) :: fexternal(:,:) SELECT TYPE (caller) TYPE IS (shield) fexternal = - caller%k * x CLASS DEFAULT WRITE(error_unit,*) 'UH OH...' END SELECT END SUBROUTINE my_callback END MODULE stuff ! then, when assigning the callback function, do this: PROGRAM example USE LIBLAMMPS USE stuff TYPE(lammps) :: lmp TYPE(shield) :: my_shield lmp = lammps() CALL lmp%command('fix ext all external pf/callback 1 1') CALL lmp%set_fix_external_callback('ext', my_callback, my_shield) END PROGRAM example WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2800: ERROR: Unknown directive type "f:function". .. f:function:: fix_external_get_force(id) Get pointer to the force array storage in a fix external instance with the given ID. .. versionadded:: 22Dec2022 Fix :doc:`external ` allows programs that are running LAMMPS through its library interfaces to add or modify certain LAMMPS properties on specific time steps, similar to the way other fixes do. This function provides access to the per-atom force storage in a fix external instance with the given fix-ID to be added to the individual atoms when using the "pf/array" mode. The *fexternal* array can be accessed like other "native" per-atom arrays accessible via the :f:func:`extract_atom` function. Please note that the array stores the forces for *local* atoms for each MPI rank, in the order determined by the neighbor list build. Because the underlying data structures can change as well as the order of atom as they migrate between MPI processes because of the domain decomposition parallelization, this function should be always called immediately before the forces are going to be set to get an up-to-date pointer. You can use, for example, :f:func:`extract_setting` to obtain the number of local atoms `nlocal` and then assume the dimensions of the returned force array as ``REAL(c_double) :: force(3,nlocal)``. This function is an alternative to the callback mechanism in fix external set up by :f:subr:`set_fix_external_callback`. The main difference is that this mechanism can be used when forces are to be pre-computed and the control alternates between LAMMPS and the external driver, while the callback mechanism can call an external subroutine to compute the force when the fix is triggered and needs them. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: ID of :doc:`fix external ` instance :to: :cpp:func:`lammps_fix_external_get_force` :r fexternal: pointer to the per-atom force array allocated by the fix :rtype fexternal: real(c_double),dimension(3,nlocal) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2844: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_energy_global(id, eng) Set the global energy contribution for a :doc:`fix external ` instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:func:`set_fix_external_callback` and :f:func:`fix_external_get_force` that also sets the contribution to the global energy from the external program. The value of the *eng* argument will be stored in the fix and applied on the current and all following time steps until changed by another call to this function. The energy is in energy units as determined by the current :doc:`units ` settings and is the **total** energy of the contribution. Thus, when running in parallel, all MPI processes have to call this function with the **same** value, and this will be returned as a scalar property of the fix external instance when accessed in LAMMPS input commands or from variables. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p real(c_double) eng: total energy to be added to the global energy :to: :cpp:func:`lammps_fix_external_set_energy_global` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2872: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_virial_global(id, virial) Set the global virial contribution for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the contribution to the global virial from an external program. The six values of the *virial* array will be stored in the fix and applied on the current and all following time steps until changed by another call to this function. The components of the virial need to be stored in the following order: *xx*, *yy*, *zz*, *xy*, *xz*, *yz*. In LAMMPS, the virial is stored internally as `stress*volume` in units of `pressure*volume` as determined by the current :doc:`units ` settings and is the **total** contribution. Thus, when running in parallel, all MPI processes have to call this function with the **same** value, and this will then be added by fix external. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: fix ID of fix external instance :p real(c_double) virial [dimension(6)]: the six global stress tensor components to be added to the global virial :to: :cpp:func:`lammps_fix_external_set_virial_global` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2904: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_energy_peratom(id, eng) Set the per-atom energy contribution for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` to set the per-atom energy contribution due to the fix from the external program as part of the callback function. For this to work, the LAMMPS object must be passed as part of the *caller* argument when registering the callback function, or the callback function must otherwise have access to the LAMMPS object, such as through a module-based pointer. .. note:: This function is fully independent from :f:subr:`fix_external_set_energy_global` and will **NOT** add any contributions to the global energy tally and will **NOT** check whether the sum of the contributions added here are consistent with the global added energy. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: fix ID of the fix external instance :p real(c_double) eng [dimension(:)]: array of length *nlocal* containing the energy to add to the per-atom energy :to: :cpp:func:`lammps_fix_external_set_energy_peratom` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2937: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_fix_external_set_virial_peratom(id, virial) This is a companion function to :f:subr:`set_fix_external_callback` to set the per-atom virial contribution due to the fix from the external program as part of the callback function. For this to work, the LAMMPS object must be passed as the *caller* argument when registering the callback function. .. versionadded:: 22Dec2022 .. note:: This function is fully independent from :f:subr:`fix_external_set_virial_global` and will **NOT** add any contributions to the global virial tally and **NOT** check whether the sum of the contributions added here are consistent with the global added virial. The order and units of the per-atom stress tensor elements are the same as for the global virial. The type and dimensions of the per-atom virial array must be ``REAL(c_double), DIMENSION(6,nlocal)``. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p real(c_double) virial [dimension(:,:)]: an array of :math:`6 \times{}`\ *nlocal* components to be added to the per-atom virial :to: :cpp:func:`lammps_set_virial_peratom` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2969: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_vector_length(id, length) Set the vector length for a global vector stored with fix external for analysis. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the length of a global vector of properties that will be stored with the fix via :f:subr:`fix_external_set_vector`. This function needs to be called **before** a call to :f:subr:`fix_external_set_vector` and **before** a run or minimize command. When running in parallel, it must be called from **all** MPI processes with the same length argument. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p integer(c_int) length: length of the global vector to be stored with the fix :to: :cpp:func:`lammps_fix_external_set_vector_length` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2997: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_vector(id, idx, val) Store a global vector value for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the values of a global vector of properties that will be stored with the fix and can be accessed from within LAMMPS input commands (e.g., fix ave/time or variables) when used in a vector context. This function needs to be called **after** a call to :f:subr:`fix_external_set_vector_length` and **before** a run or minimize command. When running in parallel, it must be called from **all** MPI processes with the **same** *idx* and *val* parameters. The variable *val* is assumed to be extensive. .. note:: The index in the *idx* parameter is 1-based (i.e., the first element is set with *idx*\ :math:`{} = 1`, and the last element of the vector with *idx*\ :math:`{} = N`, where :math:`N` is the value of the *length* parameter of the call to :f:subr:`fix_external_set_vector_length`). Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: ID of fix external instance :p integer(c_int) idx: 1-based index in global vector :p integer(c_int) val: value to be stored in global vector at index *idx* :to: :cpp:func:`lammps_fix_external_set_vector` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3033: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: flush_buffers() This function calls :cpp:func:`lammps_flush_buffers`, which flushes buffered output to be written to screen and logfile. This can simplify capturing output from LAMMPS library calls. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_flush_buffers` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3045: ERROR: Unknown directive type "f:function". .. f:function:: is_running() Check if LAMMPS is currently inside a run or minimization. .. versionadded:: 3Nov2022 This function can be used from signal handlers or multi-threaded applications to determine if the LAMMPS instance is currently active. :to: :cpp:func:`lammps_is_running` :r is_running: ``.FALSE.`` if idle or ``.TRUE.`` if active :rtype is_running: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3060: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: force_timeout() Force a timeout to stop an ongoing run cleanly. .. versionadded:: 3Nov2022 This function can be used from signal handlers or multi-threaded applications to terminate an ongoing run cleanly. :to: :cpp:func:`lammps_force_timeout` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3073: ERROR: Unknown directive type "f:function". .. f:function:: has_error() Check if there is a (new) error message available. .. versionadded:: 3Nov2022 This function can be used to query if an error inside of LAMMPS has thrown a :ref:`C++ exception `. :to: :cpp:func:`lammps_has_error` :r has_error: ``.TRUE.`` if there is an error. :rtype has_error: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3088: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_last_error_message(buffer[,status]) Copy the last error message into the provided buffer. .. versionadded:: 3Nov2022 This function can be used to retrieve the error message that was set in the event of an error inside of LAMMPS that resulted in a :ref:`C++ exception `. A suitable buffer for a string has to be provided. If the internally-stored error message is longer than the string, it will be truncated accordingly. The optional argument *status* indicates the kind of error: a "1" indicates an error that occurred on all MPI ranks and is often recoverable, while a "2" indicates an abort that would happen only in a single MPI rank and thus may not be recoverable, as other MPI ranks may be waiting on the failing MPI rank(s) to send messages. :p character(len=\*) buffer: string buffer to copy the error message into :o integer(c_int) status [optional]: 1 when all ranks had the error, 2 on a single-rank error. :to: :cpp:func:`lammps_get_last_error_message` looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 6%] Build .. Errors_details writing output... [ 11%] Errors_messages .. 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[ 95%] JPG/coul_soft.jpg copying images... [ 96%] JPG/dreiding_hbond.jpg copying images... [ 96%] JPG/examples_edpd.jpg copying images... [ 97%] JPG/examples_mdpd.gif copying images... [ 98%] JPG/examples_mdpd_first.jpg copying images... [ 99%] JPG/examples_mdpd_last.jpg copying images... [ 99%] JPG/examples_tdpd.jpg copying images... [100%] JPG/WF_LJ.jpg dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 200 warnings. The HTML pages are in html. Running Sphinx v7.2.6 Initializing Spelling Checker 7.7.0 loading pickled environment... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 1 source files that are out of date updating environment: 0 added, 1 changed, 0 removed reading sources... [100%] Fortran WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:4: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:43: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:64: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:func /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:133: ERROR: Unknown interpreted text role "f:func". WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:254: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:module /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:257: ERROR: Unknown directive type "f:module". .. f:module:: LIBLAMMPS WARNING: unknown directive or role name: f:mod /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:259: ERROR: Unknown interpreted text role "f:mod". WARNING: unknown directive or role name: f:currentmodule /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:262: ERROR: Unknown directive type "f:currentmodule". .. f:currentmodule:: None WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:264: ERROR: Unknown directive type "f:type". .. f:type:: lammps Derived type that is the general class of the Fortran interface. It holds a reference to the :cpp:class:`LAMMPS ` class instance to which any of the included calls are forwarded. :f handle: reference to the LAMMPS class :ftype handle: c_ptr :f style: derived type to access lammps style constants :ftype style: type(lammps_style) :f type: derived type to access lammps type constants :ftype type: type(lammps_type) :f dtype: derived type to access lammps data type constants :ftype dtype: type(lammps_dtype) :f close: :f:subr:`close` :ftype close: subroutine :f subroutine error: :f:subr:`error` :ftype error: subroutine :f file: :f:subr:`file` :ftype file: subroutine :f command: :f:subr:`command` :ftype command: subroutine :f commands_list: :f:subr:`commands_list` :ftype commands_list: subroutine :f commands_string: :f:subr:`commands_string` :ftype commands_string: subroutine :f get_natoms: :f:func:`get_natoms` :ftype get_natoms: function :f get_thermo: :f:func:`get_thermo` :ftype get_thermo: function :f last_thermo: :f:func:`last_thermo` :ftype last_thermo: function :f extract_box: :f:subr:`extract_box` :ftype extract_box: subroutine :f reset_box: :f:subr:`reset_box` :ftype reset_box: subroutine :f memory_usage: :f:subr:`memory_usage` :ftype memory_usage: subroutine :f get_mpi_comm: :f:func:`get_mpi_comm` :ftype get_mpi_comm: function :f extract_setting: :f:func:`extract_setting` :ftype extract_setting: function :f extract_global: :f:func:`extract_global` :ftype extract_global: function :f extract_atom: :f:func:`extract_atom` :ftype extract_atom: function :f extract_compute: :f:func:`extract_compute` :ftype extract_compute: function :f extract_fix: :f:func:`extract_fix` :ftype extract_fix: function :f extract_variable: :f:func:`extract_variable` :ftype extract_variable: function :f set_variable: :f:subr:`set_variable` :ftype set_variable: subroutine :f set_string_variable: :f:subr:`set_set_string_variable` :ftype set_string_variable: subroutine :f set_internal_variable: :f:subr:`set_internal_variable` :ftype set_internal_variable: subroutine :f gather_atoms: :f:subr:`gather_atoms` :ftype gather_atoms: subroutine :f gather_atoms_concat: :f:subr:`gather_atoms_concat` :ftype gather_atoms_concat: subroutine :f gather_atoms_subset: :f:subr:`gather_atoms_subset` :ftype gather_atoms_subset: subroutine :f scatter_atoms: :f:subr:`scatter_atoms` :ftype scatter_atoms: subroutine :f scatter_atoms_subset: :f:subr:`scatter_atoms_subset` :ftype scatter_atoms_subset: subroutine :f gather_bonds: :f:subr:`gather_bonds` :ftype gather_bonds: subroutine :f gather_angles: :f:subr:`gather_angles` :ftype gather_angles: subroutine :f gather_dihedrals: :f:subr:`gather_dihedrals` :ftype gather_dihedrals: subroutine :f gather_impropers: :f:subr:`gather_impropers` :ftype gather_impropers: subroutine :f gather: :f:subr:`gather` :ftype gather: subroutine :f gather_concat: :f:subr:`gather_concat` :ftype gather_concat: subroutine :f gather_subset: :f:subr:`gather_subset` :ftype gather_subset: subroutine :f scatter: :f:subr:`scatter` :ftype scatter: subroutine :f scatter_subset: :f:subr:`scatter_subset` :ftype scatter_subset: subroutine :f create_atoms: :f:subr:`create_atoms` :ftype create_atoms: subroutine :f find_pair_neighlist: :f:func:`find_pair_neighlist` :ftype find_pair_neighlist: function :f find_fix_neighlist: :f:func:`find_fix_neighlist` :ftype find_fix_neighlist: function :f find_compute_neighlist: :f:func:`find_compute_neighlist` :ftype find_compute_neighlist: function :f neighlist_num_elements: :f:func:`neighlist_num_elements` :ftype neighlist_num_elements: function :f neighlist_element_neighbors: :f:subr:`neighlist_element_neighbors` :ftype neighlist_element_neighbors: subroutine :f version: :f:func:`version` :ftype version: function :f get_os_info: :f:subr:`get_os_info` :ftype get_os_info: subroutine :f config_has_mpi_support: :f:func:`config_has_mpi_support` :ftype config_has_mpi_support: function :f config_has_gzip_support: :f:func:`config_has_gzip_support` :ftype config_has_gzip_support: function :f config_has_png_support: :f:func:`config_has_png_support` :ftype config_has_png_support: function :f config_has_jpeg_support: :f:func:`config_has_jpeg_support` :ftype config_has_jpeg_support: function :f config_has_ffmpeg_support: :f:func:`config_has_ffmpeg_support` :ftype config_has_ffmpeg_support: function :f config_has_exceptions: :f:func:`config_has_exceptions` :ftype config_has_exceptions: function :f config_has_package: :f:func:`config_has_package` :ftype config_has_package: function :f config_package_count: :f:func:`config_package_count` :ftype config_package_count: function :f config_package_name: :f:func:`config_package_name` :ftype config_package_name: function :f installed_packages: :f:subr:`installed_packages` :ftype installed_packages: subroutine :f config_accelerator: :f:func:`config_accelerator` :ftype config_accelerator: function :f has_gpu_device: :f:func:`has_gpu_device` :ftype has_gpu_device: function :f get_gpu_device_info: :f:subr:`get_gpu_device_info` :ftype get_gpu_device_info: subroutine :f has_style: :f:func:`has_style` :ftype has_style: function :f style_count: :f:func:`style_count` :ftype style_count: function :f style_name: :f:func:`style_name` :ftype style_name: function :f has_id: :f:func:`has_id` :ftype has_id: function :f id_count: :f:func:`id_count` :ftype id_count: function :f id_name: :f:subr:`id_name` :ftype id_name: subroutine :f plugin_count: :f:func:`plugin_count` :ftype plugin_count: function :f plugin_name: :f:subr:`plugin_name` :ftype plugin_count: subroutine :f encode_image_flags: :f:func:`encode_image_flags` :ftype encode_image_flags: function :f decode_image_flags: :f:subr:`decode_image_flags` :ftype decode_image_flags: subroutine :f set_fix_external_callback: :f:subr:`set_fix_external_callback` :ftype set_fix_external_callback: subroutine :f fix_external_get_force: :f:func:`fix_external_get_force` :ftype fix_external_get_force: function :f fix_external_set_energy_global: :f:subr:`fix_external_set_energy_global` :ftype fix_external_set_energy_global: subroutine :f fix_external_set_virial_global: :f:subr:`fix_external_set_virial_global` :ftype fix_external_set_virial_global: subroutine :f fix_external_set_energy_peratom: :f:subr:`fix_external_set_energy_peratom` :ftype fix_external_set_energy_peratom: subroutine :f fix_external_set_virial_peratom: :f:subr:`fix_external_set_virial_peratom` :ftype fix_external_set_virial_peratom: subroutine :f fix_external_set_vector_length: :f:subr:`fix_external_set_vector_length` :ftype fix_external_set_vector_length: subroutine :f fix_external_set_vector: :f:subr:`fix_external_set_vector` :ftype fix_external_set_vector: subroutine :f flush_buffers: :f:subr:`flush_buffers` :ftype flush_buffers: subroutine :f is_running: :f:func:`is_running` :ftype is_running: function :f force_timeout: :f:subr:`force_timeout` :ftype force_timeout: subroutine :f has_error: :f:func:`has_error` :ftype has_error: function :f get_last_error_message: :f:subr:`get_last_error_message` :ftype get_last_error_message: subroutine WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:441: ERROR: Unknown directive type "f:function". .. f:function:: lammps([args][,comm]) This is the constructor for the Fortran class and will forward the arguments to a call to either :cpp:func:`lammps_open_fortran` or :cpp:func:`lammps_open_no_mpi`. If the LAMMPS library has been compiled with MPI support, it will also initialize MPI, if it has not already been initialized before. The *args* argument with the list of command line parameters is optional and so it the *comm* argument with the MPI communicator. If *comm* is not provided, ``MPI_COMM_WORLD`` is assumed. For more details please see the documentation of :cpp:func:`lammps_open`. :o args: arguments as list of strings :otype args: character(len=\*),dimension(:),optional :o comm: MPI communicator :otype comm: integer,optional :to: :cpp:func:`lammps_open_fortran` :to: :cpp:func:`lammps_open_no_mpi` :r lammps: an instance of the :f:type:`lammps` derived type .. note:: The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI, is not directly supported by this interface due to the complexities of supporting both the :f:mod:`MPI_F08` and :f:mod:`MPI` modules at the same time. However, you should be able to use the ``MPI_VAL`` member of the ``MPI_comm`` derived type to access the integer value of the communicator, such as in .. code-block:: fortran PROGRAM testmpi USE LIBLAMMPS USE MPI_F08 TYPE(lammps) :: lmp lmp = lammps(comm=MPI_COMM_SELF%MPI_VAL) END PROGRAM testmpi WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:480: ERROR: Unknown directive type "f:type". .. f:type:: lammps_style This derived type is there to provide a convenient interface for the style constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and :f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``, these constants will be ``lmp%style%global``, ``lmp%style%atom``, and ``lmp%style%local``. These values are identical to the values described in :cpp:enum:`_LMP_STYLE_CONST` for the C library interface. :f integer(c_int) global: used to request global data :f integer(c_int) atom: used to request per-atom data :f integer(c_int) local: used to request local data WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:493: ERROR: Unknown directive type "f:type". .. f:type:: lammps_type This derived type is there to provide a convenient interface for the type constants used with :f:func:`extract_compute`, :f:func:`extract_fix`, and :f:func:`extract_variable`. Assuming your LAMMPS instance is called ``lmp``, these constants will be ``lmp%type%scalar``, ``lmp%type%vector``, and ``lmp%type%array``. These values are identical to the values described in :cpp:enum:`_LMP_TYPE_CONST` for the C library interface. :f integer(c_int) scalar: used to request scalars :f integer(c_int) vector: used to request vectors :f integer(c_int) array: used to request arrays (matrices) WARNING: unknown directive or role name: f:type /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:506: ERROR: Unknown interpreted text role "f:type". WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:509: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: close([finalize]) This method will close down the LAMMPS instance through calling :cpp:func:`lammps_close`. If the *finalize* argument is present and has a value of ``.TRUE.``, then this subroutine also calls :cpp:func:`lammps_kokkos_finalize` and :cpp:func:`lammps_mpi_finalize`. :o finalize: shut down the MPI environment of the LAMMPS library if ``.TRUE.``. :otype finalize: logical,optional :to: :cpp:func:`lammps_close` :to: :cpp:func:`lammps_mpi_finalize` :to: :cpp:func:`lammps_kokkos_finalize` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:526: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: error(error_type, error_text) This method is a wrapper around the :cpp:func:`lammps_error` function and will dispatch an error through the LAMMPS Error class. .. versionadded:: 3Nov2022 :p error_type: constant to select which Error class function to call :ptype error_type: integer(c_int) :p character(len=\*) error_text: error message :to: :cpp:func:`lammps_error` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:540: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: file(filename) This method will call :cpp:func:`lammps_file` to have LAMMPS read and process commands from a file. :p character(len=\*) filename: name of file with LAMMPS commands :to: :cpp:func:`lammps_file` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:550: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: command(cmd) This method will call :cpp:func:`lammps_command` to have LAMMPS execute a single command. :p character(len=\*) cmd: single LAMMPS command :to: :cpp:func:`lammps_command` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:560: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: commands_list(cmds) This method will call :cpp:func:`lammps_commands_list` to have LAMMPS execute a list of input lines. :p character(len=\*) cmd [dimension(:)]: list of LAMMPS input lines :to: :cpp:func:`lammps_commands_list` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:570: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: commands_string(str) This method will call :cpp:func:`lammps_commands_string` to have LAMMPS execute a block of commands from a string. :p character(len=\*) str: LAMMPS input in string :to: :cpp:func:`lammps_commands_string` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:580: ERROR: Unknown directive type "f:function". .. f:function:: get_natoms() This function will call :cpp:func:`lammps_get_natoms` and return the number of atoms in the system. :to: :cpp:func:`lammps_get_natoms` :r real(c_double) natoms: number of atoms .. note:: If you would prefer to get the number of atoms in its native format (i.e., as a 32- or 64-bit integer, depending on how LAMMPS was compiled), this can be extracted with :f:func:`extract_global`. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:596: ERROR: Unknown directive type "f:function". .. f:function:: get_thermo(name) This function will call :cpp:func:`lammps_get_thermo` and return the value of the corresponding thermodynamic keyword. .. versionadded:: 3Nov2022 :p character(len=\*) name: string with the name of the thermo keyword :to: :cpp:func:`lammps_get_thermo` :r value [real(c_double)]: value of the requested thermo property or `0.0_c_double` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:609: ERROR: Unknown directive type "f:function". .. f:function:: last_thermo(what, index) This function will call :cpp:func:`lammps_last_thermo` and returns either a string or a pointer to a cached copy of LAMMPS last thermodynamic output, depending on the data requested through *what*. Note that *index* uses 1-based indexing to access thermo output columns. .. versionadded:: 15Jun2023 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data (with the exception of string data, which are copied and returned as ordinary Fortran strings). Pointers must be of the correct data type to point to said data (typically ``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``). The pointer being associated with LAMMPS data is type-checked at run-time via an overloaded assignment operator. The pointers returned by this function point to temporary, read-only data that may be overwritten at any time, so their target values need to be copied to local storage if they are supposed to persist. For example, .. code-block:: fortran PROGRAM thermo USE LIBLAMMPS USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_double, c_int64_t, c_int TYPE(lammps) :: lmp INTEGER(KIND=c_int64_t), POINTER :: ntimestep, bval REAL(KIND=c_double), POINTER :: dval INTEGER(KIND=c_int), POINTER :: nfield, typ, ival INTEGER(KIND=c_int) :: i CHARACTER(LEN=11) :: key lmp = lammps() CALL lmp%file('in.sysinit') ntimestep = lmp%last_thermo('step', 0) nfield = lmp%last_thermo('num', 0) PRINT*, 'Last thermo output on step: ', ntimestep, ' Number of fields: ', nfield DO i=1, nfield key = lmp%last_thermo('keyword',i) typ = lmp%last_thermo('type',i) IF (typ == lmp%dtype%i32) THEN ival = lmp%last_thermo('data',i) PRINT*, key, ':', ival ELSE IF (typ == lmp%dtype%i64) THEN bval = lmp%last_thermo('data',i) PRINT*, key, ':', bval ELSE IF (typ == lmp%dtype%r64) THEN dval = lmp%last_thermo('data',i) PRINT*, key, ':', dval END IF END DO CALL lmp%close(.TRUE.) END PROGRAM thermo would extract the last timestep where thermo output was done and the number of columns it printed. Then it loops over the columns to print out column header keywords and the corresponding data. .. note:: If :f:func:`last_thermo` returns a string, the string must have a length greater than or equal to the length of the string (not including the terminal ``NULL`` character) that LAMMPS returns. If the variable's length is too short, the string will be truncated. As usual in Fortran, strings are padded with spaces at the end. If you use an allocatable string, the string **must be allocated** prior to calling this function. :p character(len=\*) what: string with the name of the thermo keyword :p integer(c_int) index: 1-based column index :to: :cpp:func:`lammps_last_thermo` :r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the assignment should be either a string (if expecting string data) or a C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the extracted property. .. warning:: Modifying the data in the location pointed to by the returned pointer may lead to inconsistent internal data and thus may cause failures, crashes, or bogus simulations. In general, it is much better to use a LAMMPS input command that sets or changes these parameters. Using an input command will take care of all side effects and necessary updates of settings derived from such settings. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:699: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: extract_box([boxlo][, boxhi][, xy][, yz][, xz][, pflags][, boxflag]) This subroutine will call :cpp:func:`lammps_extract_box`. All parameters are optional, though obviously at least one should be present. The parameters *pflags* and *boxflag* are stored in LAMMPS as integers, but should be declared as ``LOGICAL`` variables when calling from Fortran. .. versionadded:: 3Nov2022 :o real(c_double) boxlo [dimension(3),optional]: vector in which to store lower-bounds of simulation box :o real(c_double) boxhi [dimension(3),optional]: vector in which to store upper-bounds of simulation box :o real(c_double) xy [optional]: variable in which to store *xy* tilt factor :o real(c_double) yz [optional]: variable in which to store *yz* tilt factor :o real(c_double) xz [optional]: variable in which to store *xz* tilt factor :o pflags: vector in which to store periodicity flags (``.TRUE.`` means periodic in that dimension) :otype pflags: logical,dimension(3),optional :o boxflag: variable in which to store boolean denoting whether the box will change during a simulation (``.TRUE.`` means box will change) :otype boxflag: logical,optional :to: :cpp:func:`lammps_extract_box` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:741: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: reset_box(boxlo, boxhi, xy, yz, xz) This subroutine will call :cpp:func:`lammps_reset_box`. All parameters are required. .. versionadded:: 3Nov2022 :p real(c_double) boxlo [dimension(3)]: vector of three doubles containing the lower box boundary :p real(c_double) boxhi [dimension(3)]: vector of three doubles containing the upper box boundary :p real(c_double) xy: *x--y* tilt factor :p real(c_double) yz: *y--z* tilt factor :p real(c_double) xz: *x--z* tilt factor :to: :cpp:func:`lammps_reset_box` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:759: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: memory_usage(meminfo) This subroutine will call :cpp:func:`lammps_memory_usage` and store the result in the three-element array *meminfo*. .. versionadded:: 3Nov2022 :p real(c_double) meminfo [dimension(3)]: vector of three doubles in which to store memory usage data :to: :cpp:func:`lammps_memory_usage` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:772: ERROR: Unknown directive type "f:function". .. f:function:: get_mpi_comm() This function returns a Fortran representation of the LAMMPS "world" communicator. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_get_mpi_comm` :r comm: Fortran integer equivalent to the MPI communicator LAMMPS is using :rtype comm: integer .. note:: The C library interface currently returns type ``int`` instead of type ``MPI_Fint``, which is the C type corresponding to Fortran ``INTEGER`` types of the default kind. On most compilers, these are the same anyway, but this interface exchanges values this way to avoid warning messages. .. note:: The :f:mod:`MPI_F08` module, which defines Fortran 2008 bindings for MPI, is not directly supported by this function. However, you should be able to convert between the two using the `MPI_VAL` member of the communicator. For example, .. code-block:: fortran USE MPI_F08 USE LIBLAMMPS TYPE(lammps) :: lmp TYPE(MPI_Comm) :: comm ! ... [commands to set up LAMMPS/etc.] comm%MPI_VAL = lmp%get_mpi_comm() should assign an :f:mod:`MPI_F08` communicator properly. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:812: ERROR: Unknown directive type "f:function". .. f:function:: extract_setting(keyword) Query LAMMPS about global settings. See the documentation for the :cpp:func:`lammps_extract_setting` function from the C library. .. versionadded:: 3Nov2022 :p character(len=\*) keyword: string containing the name of the thermo keyword :to: :cpp:func:`lammps_extract_setting` :r integer(c_int) setting: value of the queried setting or :math:`-1` if unknown WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:826: ERROR: Unknown directive type "f:function". .. f:function:: extract_global(name) This function calls :cpp:func:`lammps_extract_global` and returns either a string or a pointer to internal global LAMMPS data, depending on the data requested through *name*. .. versionadded:: 3Nov2022 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data (with the exception of string data, which are copied and returned as ordinary Fortran strings). Pointers must be of the correct data type to point to said data (typically ``INTEGER(c_int)``, ``INTEGER(c_int64_t)``, or ``REAL(c_double)``) and have compatible kind and rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. The pointers returned by this function are generally persistent; therefore it is not necessary to call the function again unless a :doc:`clear` command has been issued, which wipes out and recreates the contents of the :cpp:class:`LAMMPS ` class. For example, .. code-block:: fortran PROGRAM demo USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int64_t, c_int, c_double USE LIBLAMMPS TYPE(lammps) :: lmp INTEGER(c_int), POINTER :: nlocal => NULL() INTEGER(c_int64_t), POINTER :: ntimestep => NULL() REAL(c_double), POINTER :: dt => NULL() CHARACTER(LEN=10) :: units lmp = lammps() ! other commands nlocal = lmp%extract_global('nlocal') ntimestep = lmp%extract_global('ntimestep') dt = lmp%extract_global('dt') units = lmp%extract_global('units') ! more commands lmp.close(.TRUE.) END PROGRAM demo would extract the number of atoms on this processor, the current time step, the size of the current time step, and the units being used into the variables *nlocal*, *ntimestep*, *dt*, and *units*, respectively. .. note:: If :f:func:`extract_global` returns a string, the string must have a length greater than or equal to the length of the string (not including the terminal ``NULL`` character) that LAMMPS returns. If the variable's length is too short, the string will be truncated. As usual in Fortran, strings are padded with spaces at the end. If you use an allocatable string, the string **must be allocated** prior to calling this function, but you can automatically reallocate it to the correct length after the function returns, viz., .. code-block :: fortran PROGRAM test USE LIBLAMMPS TYPE(lammps) :: lmp CHARACTER(LEN=:), ALLOCATABLE :: str lmp = lammps() CALL lmp%command('units metal') ALLOCATE(CHARACTER(LEN=80) :: str) str = lmp%extract_global('units') str = TRIM(str) ! re-allocates to length len_trim(str) here PRINT*, LEN(str), LEN_TRIM(str) END PROGRAM test will print the number 5 (the length of the word "metal") twice. :p character(len=\*) name: string with the name of the property to extract :to: :cpp:func:`lammps_extract_global` :r pointer [polymorphic]: pointer to LAMMPS data. The left-hand side of the assignment should be either a string (if expecting string data) or a C-compatible pointer (e.g., ``INTEGER(c_int), POINTER :: nlocal``) to the extracted property. If expecting vector data, the pointer should have dimension ":". .. warning:: Modifying the data in the location pointed to by the returned pointer may lead to inconsistent internal data and thus may cause failures, crashes, or bogus simulations. In general, it is much better to use a LAMMPS input command that sets or changes these parameters. Using an input command will take care of all side effects and necessary updates of settings derived from such settings. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:921: ERROR: Unknown directive type "f:function". .. f:function:: extract_atom(name) This function calls :cpp:func:`lammps_extract_atom` and returns a pointer to LAMMPS data tied to the :cpp:class:`Atom` class, depending on the data requested through *name*. .. versionadded:: 3Nov2022 Note that this function actually does not return a pointer, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct type, kind, and rank (e.g., ``INTEGER(c_int), DIMENSION(:)`` for "type", "mask", or "id"; ``INTEGER(c_int64_t), DIMENSION(:)`` for "id" if LAMMPS was compiled with the ``-DLAMMPS_BIGBIG`` flag; ``REAL(c_double), DIMENSION(:,:)`` for "x", "v", or "f"; and so forth). The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time. :p character(len=\*) name: string with the name of the property to extract :to: :cpp:func:`lammps_extract_atom` :r pointer: pointer to LAMMPS data. The left-hand side of the assignment should be a C-interoperable pointer of appropriate kind and rank (e.g., ``INTEGER(c_int), POINTER :: mask(:)``) to the extracted property. If expecting vector data, the pointer should have dimension ":"; if expecting matrix data, the pointer should have dimension ":,:". :rtype pointer: polymorphic .. warning:: Pointers returned by this function are generally not persistent, as per-atom data may be redistributed, reallocated, and reordered at every re-neighboring operation. It is advisable to re-bind pointers using :f:func:`extract_atom` between runs. .. admonition:: Array index order Two-dimensional arrays returned from :f:func:`extract_atom` will be **transposed** from equivalent arrays in C, and they will be indexed from 1 instead of 0. For example, in C, .. code-block:: c void *lmp; double **x; /* more code to setup, etc. */ x = lammps_extract_atom(lmp, "x"); printf("%f\n", x[5][1]); will print the *y*-coordinate of the sixth atom on this processor. Conversely, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:,:), POINTER :: x => NULL() ! more code to setup, etc. x = lmp%extract_atom("x") PRINT '(f0.6)', x(2,6) will print the *y*-coordinate of the sixth atom on this processor (note the transposition of the two indices). This is not a choice, but rather a consequence of the different conventions adopted by the Fortran and C standards decades ago: in C, the block of data .. parsed-literal:: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 interpreted as a :math:`4\times4` matrix would be .. math:: \begin{bmatrix} 1 & 2 & 3 & 4 \\ 5 & 6 & 7 & 8 \\ 9 & 10 & 11 & 12 \\ 13 & 14 & 15 & 16 \end{bmatrix}, that is, in row-major order. In Fortran, the same block of data is interpreted in column-major order, namely, .. math:: \begin{bmatrix} 1 & 5 & 9 & 13 \\ 2 & 6 & 10 & 14 \\ 3 & 7 & 11 & 15 \\ 4 & 8 & 12 & 16 \end{bmatrix}. This difference in interpretation of the same block of data by the two languages means, in effect, that matrices from C or C++ will be transposed when interpreted in Fortran. .. note:: If you would like the indices to start at 0 instead of 1 (which follows typical notation in C and C++, but not Fortran), you can create another pointer and associate it thus: .. code-block:: fortran REAL(c_double), DIMENSION(:,:), POINTER :: x, x0 x = lmp%extract_atom("x") x0(0:,0:) => x The above would cause the dimensions of *x* to be (1:3, 1:nmax) and those of *x0* to be (0:2, 0:nmax\ :math:`-`\ 1). WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1032: ERROR: Unknown directive type "f:function". .. f:function:: extract_compute(id, style, type) This function calls :cpp:func:`lammps_extract_compute` and returns a pointer to LAMMPS data tied to the :cpp:class:`Compute` class, specifically data provided by the compute identified by *id*. Computes may provide global, per-atom, or local data, and those data may be a scalar, a vector, or an array. Since computes may provide multiple kinds of data, the user is required to specify which set of data is to be returned through the *style* and *type* variables. .. versionadded:: 3Nov2022 Note that this function actually does not return a value, but rather associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct data type to point to said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: COM ! code to setup, create atoms, etc. CALL lmp%command('compute COM all com') COM = lmp%extract_compute('COM', lmp%style%global, lmp%style%type) will bind the variable *COM* to the center of mass of the atoms created in your simulation. The vector in this case has length 3; the length (or, in the case of array data, the number of rows and columns) is determined for you based on data from the :cpp:class:`Compute` class. .. admonition:: Array index order Two-dimensional arrays returned from :f:func:`extract_compute` will be **transposed** from equivalent arrays in C, and they will be indexed from 1 instead of 0. See the note at :f:func:`extract_atom` for further details. The following combinations are possible (assuming ``lmp`` is the name of your LAMMPS instance): .. list-table:: :header-rows: 1 :widths: auto * - Style - Type - Type to assign to - Returned data * - ``lmp%style%global`` - ``lmp%type%scalar`` - ``REAL(c_double), POINTER`` - Global scalar * - ``lmp%style%global`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Global vector * - ``lmp%style%global`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Global array * - ``lmp%style%atom`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%atom`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array * - ``lmp%style%local`` - ``lmp%type%vector`` - ``REAL(c_double), DIMENSION(:), POINTER`` - Local vector * - ``lmp%style%local`` - ``lmp%type%array`` - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Local array :p character(len=\*) id: compute ID from which to extract data :p integer(c_int) style: value indicating the style of data to extract (global, per-atom, or local) :p integer(c_int) type: value indicating the type of data to extract (scalar, vector, or array) :to: :cpp:func:`lammps_extract_compute` :r pointer: pointer to LAMMPS data. The left-hand side of the assignment should be a C-compatible pointer (e.g., ``REAL(c_double), POINTER :: x``) to the extracted property. If expecting vector data, the pointer should have dimension ":"; if expecting array (matrix) data, the pointer should have dimension ":,:". :rtype pointer: polymorphic .. note:: If the compute's data are not already computed for the current step, the compute will be invoked. LAMMPS cannot easily check at that time if it is valid to invoke a compute, so it may fail with an error. The caller has to check to avoid such an error. .. warning:: The pointers returned by this function are generally not persistent, since the computed data may be re-distributed, re-allocated, and re-ordered at every invocation. It is advisable to re-invoke this function before the data are accessed or make a copy if the data are to be used after other LAMMPS commands have been issued. Do **not** modify the data returned by this function. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1144: ERROR: Unknown directive type "f:function". .. f:function:: extract_fix(id, style, type[, nrow][, ncol]) This function calls :cpp:func:`lammps_extract_fix` and returns a pointer to LAMMPS data tied to the :cpp:class:`Fix` class, specifically data provided by the fix identified by *id*. Fixes may provide global, per-atom, or local data, and those data may be a scalar, a vector, or an array. Since many fixes provide multiple kinds of data, the user is required to specify which set of data is to be returned through the *style* and *type* variables. .. versionadded:: 3Nov2022 Global data are calculated at the time they are requested and are only available element-by-element. As such, the user is expected to provide the *nrow* variable to specify which element of a global vector or the *nrow* and *ncol* variables to specify which element of a global array the user wishes LAMMPS to return. The *ncol* variable is optional for global scalar or vector data, and both *nrow* and *ncol* are optional when a global scalar is requested, as well as when per-atom or local data are requested. The following combinations are possible (assuming ``lmp`` is the name of your LAMMPS instance): .. list-table:: :header-rows: 1 :widths: auto * - Style - Type - nrow - ncol - Type to assign to - Returned data * - ``lmp%style%global`` - ``lmp%type%scalar`` - Ignored - Ignored - ``REAL(c_double)`` - Global scalar * - ``lmp%style%global`` - ``lmp%type%vector`` - Required - Ignored - ``REAL(c_double)`` - Element of global vector * - ``lmp%style%global`` - ``lmp%type%array`` - Required - Required - ``REAL(c_double)`` - Element of global array * - ``lmp%style%atom`` - ``lmp%type%scalar`` - - - - (not allowed) * - ``lmp%style%atom`` - ``lmp%type%vector`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%atom`` - ``lmp%type%array`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array * - ``lmp%style%local`` - ``lmp%type%scalar`` - - - - (not allowed) * - ``lmp%style%local`` - ``lmp%type%vector`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:), POINTER`` - Per-atom vector * - ``lmp%style%local`` - ``lmp%type%array`` - Ignored - Ignored - ``REAL(c_double), DIMENSION(:,:), POINTER`` - Per-atom array In the case of global data, this function returns a value of type ``REAL(c_double)``. For per-atom or local data, this function does not return a value but instead associates the pointer on the left side of the assignment to point to internal LAMMPS data. Pointers must be of the correct type and kind to point to said data (i.e., ``REAL(c_double)``) and have compatible rank. The pointer being associated with LAMMPS data is type-, kind-, and rank-checked at run-time via an overloaded assignment operator. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double) :: dr, dx, dy, dz ! more code to set up, etc. lmp%command('fix george all recenter 2 2 2') ! more code dr = lmp%extract_fix("george", lmp%style%global, lmp%style%scalar) dx = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 1) dy = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 2) dz = lmp%extract_fix("george", lmp%style%global, lmp%style%vector, 3) will extract the global scalar calculated by :doc:`fix recenter ` into the variable *dr* and the three elements of the global vector calculated by fix recenter into the variables *dx*, *dy*, and *dz*, respectively. If asked for per-atom or local data, :f:func:`extract_compute` returns a pointer to actual LAMMPS data. The pointer so returned will have the appropriate size to match the internal data, and will be type/kind/rank-checked at the time of the assignment. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: r ! more code to set up, etc. lmp%command('fix state all store/state 0 x y z') ! more code r = lmp%extract_fix('state', lmp%style%atom, lmp%type%array) will bind the pointer *r* to internal LAMMPS data representing the per-atom array computed by :doc:`fix store/state ` when three inputs are specified. Similarly, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), POINTER :: x ! more code to set up, etc. lmp%command('fix state all store/state 0 x') ! more code x = lmp%extract_fix('state', lmp%style%atom, lmp%type%vector) will associate the pointer *x* with internal LAMMPS data corresponding to the per-atom vector computed by :doc:`fix store/state ` when only one input is specified. Similar examples with ``lmp%style%atom`` replaced by ``lmp%style%local`` will extract local data from fixes that define local vectors and/or arrays. .. warning:: The pointers returned by this function for per-atom or local data are generally not persistent, since the computed data may be redistributed, reallocated, and reordered at every invocation of the fix. It is thus advisable to re-invoke this function before the data are accessed or to make a copy if the data are to be used after other LAMMPS commands have been issued. .. note:: LAMMPS cannot easily check if it is valid to access the data, so it may fail with an error. The caller has to avoid such an error. :p character(len=\*) id: string with the name of the fix from which to extract data :p integer(c_int) style: value indicating the style of data to extract (global, per-atom, or local) :p integer(c_int) type: value indicating the type of data to extract (scalar, vector, or array) :p integer(c_int) nrow: row index (used only for global vectors and arrays) :p integer(c_int) ncol: column index (only used for global arrays) :to: :cpp:func:`lammps_extract_fix` :r data: LAMMPS data (for global data) or a pointer to LAMMPS data (for per-atom or local data). The left-hand side of the assignment should be of type ``REAL(c_double)`` and have appropriate rank (i.e., ``DIMENSION(:)`` if expecting per-atom or local vector data and ``DIMENSION(:,:)`` if expecting per-atom or local array data). If expecting local or per-atom data, it should have the ``POINTER`` attribute, but if expecting global data, it should be an ordinary (non-``POINTER``) variable. :rtype data: polymorphic .. admonition:: Array index order Two-dimensional global, per-atom, or local array data from :f:func:`extract_fix` will be **transposed** from equivalent arrays in C (or in the ordinary LAMMPS interface accessed through thermodynamic output), and they will be indexed from 1, not 0. This is true even for global data, which are returned as scalars---this is done primarily so the interface is consistent, as there is no choice but to transpose the indices for per-atom or local array data. See the similar note under :f:func:`extract_atom` for further details. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1337: ERROR: Unknown directive type "f:function". .. f:function:: extract_variable(name[,group]) This function calls :cpp:func:`lammps_extract_variable` and returns a scalar, vector, or string containing the value of the variable identified by *name*. When the variable is an *equal*-style variable (or one compatible with that style such as *internal*), the variable is evaluated and the corresponding value returned. When the variable is an *atom*-style variable, the variable is evaluated and a vector of values is returned. With all other variables, a string is returned. The *group* argument is only used for *atom* style variables and is ignored otherwise. If *group* is absent for *atom*-style variables, the group is assumed to be "all". .. versionadded:: 3Nov2022 This function returns the values of the variables, not pointers to them. Vectors pointing to *atom*-style variables should be of type ``REAL(c_double)``, be of rank 1 (i.e., ``DIMENSION(:)``), and have the ``ALLOCATABLE`` attribute. .. note:: Unlike the C library interface, the Fortran interface does not require you to deallocate memory when you are through; this is done for you, behind the scenes. For example, .. code-block:: fortran TYPE(lammps) :: lmp REAL(c_double) :: area ! more code to set up, etc. lmp%command('variable A equal lx*ly') ! more code area = lmp%extract_variable("A") will extract the *x*\ --*y* cross-sectional area of the simulation into the variable *area*. :p character(len=\*) name: variable name to evaluate :o character(len=\*) group [optional]: group for which to extract per-atom data (if absent, use "all") :to: :cpp:func:`lammps_extract_variable` :r data: scalar of type ``REAL(c_double)`` (for *equal*-style variables and others that are *equal*-compatible), vector of type ``REAL(c_double), DIMENSION(:), ALLOCATABLE`` for *atom*- or *vector*-style variables, or ``CHARACTER(LEN=*)`` for *string*-style and compatible variables. Strings whose length is too short to hold the result will be truncated. Allocatable strings must be allocated before this function is called; see note at :f:func:`extract_global` regarding allocatable strings. Allocatable arrays (for *atom*- and *vector*-style data) will be reallocated on assignment. :rtype data: polymorphic WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1401: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_variable(name, str) Set the value of a string-style variable. .. deprecated:: 7Feb2024 This function assigns a new value from the string *str* to the string-style variable *name*\ . If *name* does not exist or is not a string-style variable, an error is generated. .. warning:: This subroutine is deprecated and :f:subr:`set_string_variable` should be used instead. :p character(len=*) name: name of the variable :p character(len=*) str: new value to assign to the variable :to: :cpp:func:`lammps_set_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1422: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_string_variable(name, str) Set the value of a string-style variable. .. versionadded:: 7Feb2024 This function assigns a new value from the string *str* to the string-style variable *name*\ . If *name* does not exist or is not a string-style variable, an error is generated. :p character(len=*) name: name of the variable :p character(len=*) str: new value to assign to the variable :to: :cpp:func:`lammps_set_string_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1438: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_internal_variable(name, val) Set the value of a internal-style variable. .. versionadded:: 7Feb2024 This function assigns a new value from the floating-point number *val* to the internal-style variable *name*\ . If *name* does not exist or is not an internal-style variable, an error is generated. :p character(len=*) name: name of the variable :p read(c_double) val: new value to assign to the variable :to: :cpp:func:`lammps_set_internal_variable` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1454: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms(name, count, data) This function calls :cpp:func:`lammps_gather_atoms` to gather the named atom-based entity for all atoms on all processors and return it in the vector *data*. The vector *data* will be ordered by atom ID, which requires consecutive atom IDs (1 to *natoms*). .. versionadded:: 3Nov2022 If you need a similar array but have non-consecutive atom IDs, see :f:func:`gather_atoms_concat`; for a similar array but for a subset of atoms, see :f:func:`gather_atoms_subset`. The *data* array will be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count* :math:`\times` *natoms*), as queried by :f:func:`get_natoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms` .. note:: If you want data from this function to be accessible as a two-dimensional array, you can declare a rank-2 pointer and reassign it, like so: .. code-block:: fortran USE, INTRINSIC :: ISO_C_BINDING USE LIBLAMMPS TYPE(lammps) :: lmp REAL(c_double), DIMENSION(:), ALLOCATABLE, TARGET :: xdata REAL(c_double), DIMENSION(:,:), POINTER :: x ! other code to set up, etc. CALL lmp%gather_atoms('x',3,xdata) x(1:3,1:size(xdata)/3) => xdata You can then access the *y*\ -component of atom 3 with ``x(2,3)``. See the note about array index order at :f:func:`extract_atom`. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1511: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms_concat(name, count, data) This function calls :cpp:func:`lammps_gather_atoms_concat` to gather the named atom-based entity for all atoms on all processors and return it in the vector *data*. .. versionadded:: 3Nov2022 The vector *data* will not be ordered by atom ID, and there is no restriction on the IDs being consecutive. If you need the IDs, you can do another :f:func:`gather_atoms_concat` with *name* set to ``id``. If you need a similar array but have consecutive atom IDs, see :f:func:`gather_atoms`; for a similar array but for a subset of atoms, see :f:func:`gather_atoms_subset`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms_concat` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1545: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_atoms_subset(name, count, ids, data) This function calls :cpp:func:`lammps_gather_atoms_subset` to gather the named atom-based entity for the atoms in the array *ids* from all processors and return it in the vector *data*. .. versionadded:: 3Nov2022 This subroutine gathers data for the requested atom IDs and stores them in a one-dimensional allocatable array. The data will be ordered by atom ID, but there is no requirement that the IDs be consecutive. If you wish to return a similar array for *all* the atoms, use :f:func:`gather_atoms` or :f:func:`gather_atoms_concat`. The *data* array will be in groups of *count* values, sorted by atom ID in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and *ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57), *x*\ (1,210), :math:`\dots`]; *ids* must be provided by the user, and *data* must be of rank 1 (i.e., ``DIMENSION(:)``) and have the ``ALLOCATABLE`` attribute. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., *x* or *mask*) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms to be gathered :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_atoms_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1587: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_atoms(name, data) This function calls :cpp:func:`lammps_scatter_atoms` to scatter the named atom-based entities in *data* to all processors. .. versionadded:: 3Nov2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to all atoms on all processors. The data must be ordered by atom ID, with the requirement that the IDs be consecutive. Use :f:func:`scatter_atoms_subset` to scatter data for some (or all) atoms, in any order. The *data* array needs to be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length *natoms* or 3\*\ *natoms*. :p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*) :p data: per-atom values packed in a one-dimensional array containing the data to be scattered. This array must have length *natoms* (e.g., for *type* or *charge*) or length *natoms*\ :math:`{}\times 3` (e.g., for *x* or *f*). The array *data* must be rank 1 (i.e., ``DIMENSION(:)``) and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *x* or *charge* or *f*). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter_atoms` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1618: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_atoms_subset(name, ids, data) This function calls :cpp:func:`lammps_scatter_atoms_subset` to scatter the named atom-based entities in *data* to all processors. .. versionadded:: 3Nov2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to a subset of atoms on all processors. The array *data* contains data associated with atom IDs, but there is no requirement that the IDs be consecutive, as they are provided in a separate array, *ids*. Use :f:func:`scatter_atoms` to scatter data for all atoms, in order. The *data* array needs to be organized in groups of 1 or 3 values, depending on which quantity is being scattered, with the groups in the same order as the array *ids*. For example, if you want *data* to be the array [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57)], then *ids* would be [1, 100, 57] and *name* would be *x*. :p character(len=\*) name: quantity to be scattered (e.g., *x* or *charge*) :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms being scattered :p data: per-atom values packed into a one-dimensional array containing the data to be scattered. This array must have either the same length as *ids* (for *mask*, *type*, etc.) or three times its length (for *x*, *f*, etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter_atoms_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1652: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_bonds(data) Gather type and constituent atom information for all bonds. .. versionadded:: 3Nov2022 This function copies the list of all bonds into an allocatable array. The array will be filled with (bond type, bond atom 1, bond atom 2) for each bond. The array is allocated to the right length (i.e., three times the number of bonds). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM bonds USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: bonds INTEGER(c_int), DIMENSION(:,:), POINTER :: bonds_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create bonds, etc. CALL lmp%gather_bonds(bonds) bonds_array(1:3, 1:SIZE(bonds)/3) => bonds DO i = 1, SIZE(bonds)/3 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4)') 'bond', bonds_array(1,i), & '; type = ', bonds_array(2,i), bonds_array(3,i) END DO END PROGRAM bonds :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_bonds` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1697: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_angles(data) Gather type and constituent atom information for all angles. .. versionadded:: 8Feb2023 This function copies the list of all angles into an allocatable array. The array will be filled with (angle type, angle atom 1, angle atom 2, angle atom 3) for each angle. The array is allocated to the right length (i.e., four times the number of angles). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM angles USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: angles INTEGER(c_int), DIMENSION(:,:), POINTER :: angles_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create angles, etc. CALL lmp%gather_angles(angles) angles_array(1:4, 1:SIZE(angles)/4) => angles DO i = 1, SIZE(angles)/4 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4)') 'angle', angles_array(1,i), & '; type = ', angles_array(2,i), angles_array(3,i), angles_array(4,i) END DO END PROGRAM angles :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_angles` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1742: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather(self, name, count, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes, in order by atom ID. .. versionadded:: 22Dec2022 This subroutine gathers data from all processes and stores them in a one-dimensional allocatable array. The array *data* will be ordered by atom ID, which requires consecutive IDs (1 to *natoms*\ ). If you need a similar array but for non-consecutive atom IDs, see :cpp:func:`lammps_gather_concat`; for a similar array but for a subset of atoms, see :cpp:func:`lammps_gather_subset`. The *data* array will be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x*, then *data* is [x(1,1), x(2,1), x(3,1), x(1,2), x(2,2), x(3,2), x(1,3), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count*\ :math:`{}\times{}`\ *natoms*), as queried by :f:func:`get_natoms`. This function will return an error if fix or compute data are requested and the fix or compute ID given does not have per-atom data. See the note about re-interpreting the vector as a matrix at :f:subr:`gather_atoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) count: number of per-atom values (e.g., 1 for *type* or *charge*, 3 for *x* or *f*); use *count* = 3 with *image* if you want the image flags unpacked into (*x*,\ *y*,\ *z*) components. :p real(c_double) data [dimension(:),allocatable]: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. :to: :cpp:func:`lammps_gather` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1784: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_dihedrals(data) Gather type and constituent atom information for all dihedrals. .. versionadded:: 8Feb2023 This function copies the list of all dihedrals into an allocatable array. The array will be filled with (dihedral type, dihedral atom 1, dihedral atom 2, dihedral atom 3, dihedral atom 4) for each dihedral. The array is allocated to the right length (i.e., five times the number of dihedrals). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM dihedrals USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: dihedrals INTEGER(c_int), DIMENSION(:,:), POINTER :: dihedrals_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create dihedrals, etc. CALL lmp%gather_dihedrals(dihedrals) dihedrals_array(1:5, 1:SIZE(dihedrals)/5) => dihedrals DO i = 1, SIZE(dihedrals)/5 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'dihedral', dihedrals_array(1,i), & '; type = ', dihedrals_array(2,i), dihedrals_array(3,i), dihedrals_array(4,i), dihedrals_array(5,i) END DO END PROGRAM dihedrals :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_dihedrals` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1830: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_impropers(data) Gather type and constituent atom information for all impropers. .. versionadded:: 8Feb2023 This function copies the list of all impropers into an allocatable array. The array will be filled with (improper type, improper atom 1, improper atom 2, improper atom 3, improper atom 4) for each improper. The array is allocated to the right length (i.e., five times the number of impropers). The array *data* must be of the same type as the LAMMPS ``tagint`` type, which is equivalent to either ``INTEGER(c_int)`` or ``INTEGER(c_int64_t)``, depending on whether ``-DLAMMPS_BIGBIG`` was used when LAMMPS was built. If the supplied array does not match, an error will result at run-time. An example of how to use this routine is below: .. code-block:: fortran PROGRAM impropers USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : OUTPUT_UNIT USE LIBLAMMPS IMPLICIT NONE INTEGER(c_int), DIMENSION(:), ALLOCATABLE, TARGET :: impropers INTEGER(c_int), DIMENSION(:,:), POINTER :: impropers_array TYPE(lammps) :: lmp INTEGER :: i ! other commands to initialize LAMMPS, create impropers, etc. CALL lmp%gather_impropers(impropers) impropers_array(1:5, 1:SIZE(impropers)/5) => impropers DO i = 1, SIZE(impropers)/5 WRITE(OUTPUT_UNIT,'(A,1X,I4,A,I4,1X,I4,1X,I4,1X,I4)') 'improper', impropers_array(1,i), & '; type = ', impropers_array(2,i), impropers_array(3,i), impropers_array(4,i), impropers_array(5,i) END DO END PROGRAM impropers :p data: array into which to copy the result. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, kind ``c_int64_t``. :ptype data: integer(kind=\*),allocatable :to: :cpp:func:`lammps_gather_impropers` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1876: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_concat(self, name, count, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes, unordered. .. versionadded:: 22Dec2022 This subroutine gathers data for all atoms and stores them in a one-dimensional allocatable array. The data will be a concatenation of chunks from each processor's owned atoms, in whatever order the atoms are in on each processor. This process has no requirement that the atom IDs be consecutive. If you need the ID of each atom, you can do another call to either :f:subr:`gather_atoms_concat` or :f:subr:`gather_concat` with *name* set to ``id``. If you have consecutive IDs and want the data to be in order, use :f:subr:`gather`; for a similar array but for a subset of atoms, use :f:subr:`gather_subset`. The *data* array will be in groups of *count* values, with *natoms* groups total, but not in order by atom ID (e.g., if *name* is *x* and *count* is 3, then *data* might be something like [x(1,11), x(2,11), x(3,11), x(1,3), x(2,3), x(3,3), x(1,5), :math:`\dots`]); *data* must be ``ALLOCATABLE`` and will be allocated to length (*count* :math:`\times` *natoms*), as queried by :f:func:`get_natoms`. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: array into which to store the data. Array *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If this array is already allocated, it will be reallocated to fit the length of the incoming data. It should have type ``INTEGER(c_int)`` if expecting integer data and ``REAL(c_double)`` if expecting floating-point data. :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_concat` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1922: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: gather_subset(name, count, ids, data) Gather the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities from all processes for a subset of atoms. .. versionadded:: 22Dec2022 This subroutine gathers data for the requested atom IDs and stores them in a one-dimensional allocatable array. The data will be ordered by atom ID, but there is no requirement that the IDs be consecutive. If you wish to return a similar array for *all* the atoms, use :f:subr:`gather` or :f:subr:`gather_concat`. The *data* array will be in groups of *count* values, sorted by atom ID in the same order as the array *ids* (e.g., if *name* is *x*, *count* = 3, and *ids* is [100, 57, 210], then *data* might look like [*x*\ (1,100), *x*\ (2,100), *x*\ (3,100), *x*\ (1,57), *x*\ (2,57), *x*\ (3,57), *x*\ (1,210), :math:`\dots`]); *ids* must be provided by the user, and *data* must have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``). If *data* is already allocated, it will be reallocated to fit the length of the incoming data. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: quantity to be scattered :p integer(c_int) ids [dimension(:)]: atom IDs corresponding to the atoms being scattered (e.g., "x" or "f" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{} > 1`) :p integer(c_int) count: number of per-atom values you expect per atom (e.g., 1 for *type*, *mask*, or *charge*; 3 for *x*, *v*, or *f*). Use *count* = 3 with *image* if you want a single image flag unpacked into *x*/*y*/*z* components. :p data: per-atom values packed into a one-dimensional array containing the data to be scattered. This array must have the ``ALLOCATABLE`` attribute and will be allocated either to the same length as *ids* (for *mask*, *type*, etc.) or to three times its length (for *x*, *f*, etc.); the array must be rank 1 and be of type ``INTEGER(c_int)`` (e.g., for *mask* or *type*) or of type ``REAL(c_double)`` (e.g., for *charge*, *x*, or *f*). :ptype data: polymorphic,dimension(:),allocatable :to: :cpp:func:`lammps_gather_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:1969: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter(name, data) This function calls :cpp:func:`lammps_scatter` to scatter the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entity in *data* to all processes. .. versionadded:: 22Dec2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to all atoms on all processes. The data must be ordered by atom ID, with the requirement that the IDs be consecutive. Use :f:subr:`scatter_subset` to scatter data for some (or all) atoms, unordered. The *data* array needs to be ordered in groups of *count* values, sorted by atom ID (e.g., if *name* is *x* and *count* = 3, then *data* = [*x*\ (1,1), *x*\ (2,1), *x*\ (3,1), *x*\ (1,2), *x*\ (2,2), *x*\ (3,2), *x*\ (1,3), :math:`\dots`]); *data* must be of length (*count* :math:`\times` *natoms*). This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=*) name: desired quantity (e.g., "x" or "f" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{} > 1`) :p data: per-atom values packed in a one-dimensional array; *data* should be of type ``INTEGER(c_int)`` or ``REAL(c_double)``, depending on the type of data being scattered, and be of rank 1 (i.e., ``DIMENSION(:)``). :ptype data: polymorphic,dimension(:) :to: :cpp:func:`lammps_scatter` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2002: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: scatter_subset(name, ids, data) This function calls :cpp:func:`lammps_scatter_subset` to scatter the named per-atom, per-atom fix, per-atom compute, or fix property/atom-based entities in *data* from a subset of atoms to all processes. .. versionadded:: 22Dec2022 This subroutine takes data stored in a one-dimensional array supplied by the user and scatters them to a subset of atoms on all processes. The array *data* contains data associated with atom IDs, but there is no requirement that the IDs be consecutive, as they are provided in a separate array. Use :f:subr:`scatter` to scatter data for all atoms, in order. The *data* array needs to be organized in groups of *count* values, with the groups in the same order as the array *ids*. For example, if you want *data* to be the array [x(1,1), x(2,1), x(3,1), x(1,100), x(2,100), x(3,100), x(1,57), x(2,57), x(3,57)], then *count* = 3 and *ids* = [1, 100, 57]. This function is not compatible with ``-DLAMMPS_BIGBIG``. :p character(len=\*) name: desired quantity (e.g., "x" or "mask" for atom properties, "f_id" for per-atom fix data, "c_id" for per-atom compute data, "d_name" or "i_name" for fix property/atom vectors with *count* = 1, "d2_name" or "i2_name" for fix property/atom vectors with *count*\ :math:`{}> 1`) :p integer(c_int) ids: list of atom IDs to scatter data for :p polymorphic data [dimension(:)]: per-atom values packed in a one-dimensional array of length *size(ids)* \* *count*. :to: :cpp:func:`lammps_scatter_subset` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2035: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: create_atoms([id,] type, x, [v,] [image,] [bexpand]) This method calls :cpp:func:`lammps_create_atoms` to create additional atoms from a given list of coordinates and a list of atom types. Additionally, the atom IDs, velocities, and image flags may be provided. .. versionadded:: 3Nov2022 :p integer(c_int) type [dimension(N)]: vector of :math:`N` atom types (required/see note below) :p real(c_double) x [dimension(3N)]: vector of :math:`3N\ x/y/z` positions of the new atoms, arranged as :math:`[x_1,y_1,z_1,x_2,y_2,\dotsc]` (required/see note below) :o integer(kind=\*) id [dimension(N),optional]: vector of :math:`N` atom IDs; if absent, LAMMPS will generate them for you. \*The ``KIND`` parameter should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which case it should be ``c_int64_t``. :o real(c_double) v [dimension(3N),optional]: vector of :math:`3N` *x*\ /*y*\ /*z* velocities of the new atoms, arranged as :math:`[v_{1,x},v_{1,y},v_{1,z},v_{2,x}, \dotsc]`; if absent, they will be set to zero :o integer(kind=\*) image [dimension(N),optional]: vector of :math:`N` image flags; if absent, they are set to zero. \*The ``KIND`` parameter should be ``c_int`` unless LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, in which case it should be ``c_int64_t``. See note below. :o bexpand: if ``.TRUE.``, atoms outside of shrink-wrap boundaries will be created, not dropped, and the box dimensions will be extended. Default is ``.FALSE.`` :otype bexpand: logical,optional :to: :cpp:func:`lammps_create_atoms` .. note:: The *type* and *x* arguments are required, but they are declared ``OPTIONAL`` in the module because making them mandatory would require *id* to be present as well. To have LAMMPS generate the ids for you, use a call something like .. code-block:: fortran lmp%create_atoms(type=new_types, x=new_xs) .. note:: When LAMMPS has been compiled with ``-DLAMMPS_BIGBIG``, it is not possible to include the *image* parameter but omit the *id* parameter. Either *id* must be present, or both *id* and *image* must be absent. This is required because having all arguments be optional in both generic functions creates an ambiguous interface. This limitation does not exist if LAMMPS was not compiled with ``-DLAMMPS_BIGBIG``. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2088: ERROR: Unknown directive type "f:function". .. f:function:: find_pair_neighlist(style[, exact][, nsub][, reqid]) Find index of a neighbor list requested by a pair style. .. versionadded:: 3Nov2022 This function determines which of the available neighbor lists for pair styles matches the given conditions. It first matches the style name. If *exact* is ``.TRUE.``, the name must match exactly; if ``.FALSE.``, a regular expression or sub-string match is done. If the pair style is *hybrid* or *hybrid/overlay*, the style is matched against the sub-styles instead. If the same pair style is used multiple times as a sub-style, the *nsub* argument must be :math:`> 0`; this argument represents the *n*\ th instance of the sub-style (same as for the :doc:`pair_coeff ` command, for example). In that case, *nsub*\ :math:`{} = 0` will not produce a match, and the function will return :math:`-1`. The final condition to be checked is the request ID (\ *reqid*\ ). This will usually be zero, but some pair styles request multiple neighbor lists and set the request ID to a value greater than zero. :p character(len=\*) style: String used to search for pair style instance. :o exact: Flag to control whether style should match exactly or only a regular expression/sub-string match is applied. Default: ``.TRUE.``. :otype exact: logical,optional :o integer(c_int) nsub [optional]: Match *nsub*\ th hybrid sub-style instance of the same style. Default: 0. :o integer(c_int) reqid [optional]: Request ID to identify the neighbor list in case there are multiple requests from the same pair style instance. Default: 0. :to: :cpp:func:`lammps_find_pair_neighlist` :r integer(c_int) index: Neighbor list index if found, otherwise :math:`-1`. WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2124: ERROR: Unknown directive type "f:function". .. f:function:: find_fix_neighlist(id[, reqid]) Find index of a neighbor list requested by a fix. .. versionadded:: 3Nov2022 The neighbor list request from a fix is identified by the fix ID and the request ID. The request ID is typically zero, but will be :math:`>0` for fixes with multiple neighbor list requests. :p character(len=\*) id: Identifier of fix instance :o integer(c_int) reqid [optional]: request ID to identify the neighbor list in cases in which there are multiple requests from the same fix. Default: 0. :to: :cpp:func:`lammps_find_fix_neighlist` :r index: neighbor list index if found, otherwise :math:`-1` :rtype index: integer(c_int) WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2144: ERROR: Unknown directive type "f:function". .. f:function:: find_compute_neighlist(id[, reqid]) Find index of a neighbor list requested by a compute. .. versionadded:: 3Nov2022 The neighbor list request from a compute is identified by the compute ID and the request ID. The request ID is typically zero, but will be :math:`> 0` in case a compute has multiple neighbor list requests. :p character(len=\*) id: Identifier of compute instance. :o integer(c_int) reqid [optional]: request ID to identify the neighbor list in cases in which there are multiple requests from the same compute. Default: 0. :to: :cpp:func:`lammps_find_compute_neighlist` :r index: neighbor list index if found, otherwise :math:`-1`. :rtype index: integer(c_int) WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2164: ERROR: Unknown directive type "f:function". .. f:function:: neighlist_num_elements(idx) Return the number of entries in the neighbor list with the given index. .. versionadded:: 3Nov2022 :p integer(c_int) idx: neighbor list index :to: :cpp:func:`lammps_neighlist_num_elements` :r inum: number of entries in neighbor list, or :math:`-1` if *idx* is not a valid index. :rtype inum: integer(c_int) :to: :cpp:func:`lammps_neighlist_num_elements` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2179: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: neighlist_element_neighbors(idx, element, iatom, neighbors) Return atom local index, number of neighbors, and array of neighbor local atom indices of a neighbor list entry. .. versionadded:: 3Nov2022 :p integer(c_int) idx: index of this neighbor list in the list of all neighbor lists :p integer(c_int) element: index of this neighbor list entry :p integer(c_int) iatom: local atom index (i.e., in the range [1,nlocal+nghost]; -1 if invalid or element value :p integer(c_int) neighbors [dimension(:),pointer]: pointer to an array of neighboring atom local indices :to: :cpp:func:`lammps_neighlist_element_neighbors` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2197: ERROR: Unknown directive type "f:function". .. f:function:: version() This method returns the numeric LAMMPS version like :cpp:func:`lammps_version` does. :to: :cpp:func:`lammps_version` :r version: LAMMPS version :rtype version: integer WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2208: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_os_info(buffer) This function can be used to retrieve detailed information about the hosting operating system and compiler/runtime environment. .. versionadded:: 3Nov2022 A suitable buffer has to be provided. The assembled text will be truncated so as not to overflow this buffer. The string is typically a few hundred bytes long. :p character(len=\*) buffer: string that will house the information. :to: :cpp:func:`lammps_get_os_info` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2225: ERROR: Unknown directive type "f:function". .. f:function:: config_has_mpi_support() This function is used to query whether LAMMPS was compiled with a real MPI library or in serial. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_config_has_mpi_support` :r has_mpi: ``.FALSE.`` when compiled with STUBS, ``.TRUE.`` if complied with MPI. :rtype has_mpi: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2239: ERROR: Unknown directive type "f:function". .. f:function:: config_has_gzip_support() Check if the LAMMPS library supports reading or writing compressed files via a pipe to gzip or similar compression programs. .. versionadded:: 3Nov2022 Several LAMMPS commands (e.g., :doc:`read_data`, :doc:`write_data`, :doc:`dump styles atom, custom, and xyz `) support reading and writing compressed files via creating a pipe to the ``gzip`` program. This function checks whether this feature was :ref:`enabled at compile time `. It does **not** check whether ``gzip`` or any other supported compression programs themselves are installed and usable. :to: :cpp:func:`lammps_config_has_gzip_support` :r has_gzip: :rtype has_gzip: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2259: ERROR: Unknown directive type "f:function". .. f:function:: config_has_png_support() Check if the LAMMPS library supports writing PNG format images. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style image ` supports writing multiple image file formats. Most of them, however, need support from an external library, and using that has to be :ref:`enabled at compile time `. This function checks whether support for the `PNG image file format `_ is available in the current LAMMPS library. :to: :cpp:func:`lammps_config_has_png_support` :r has_png: :rtype has_png: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2278: ERROR: Unknown directive type "f:function". .. f:function:: config_has_jpeg_support() Check if the LAMMPS library supports writing JPEG format images. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style image ` supports writing multiple image file formats. Most of them, however, need support from an external library, and using that has to be :ref:`enabled at compile time `. This function checks whether support for the `JPEG image file format `_ is available in the current LAMMPS library. :to: :cpp:func:`lammps_config_has_jpeg_support` :r has_jpeg: :rtype has_jpeg: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2296: ERROR: Unknown directive type "f:function". .. f:function:: config_has_ffmpeg_support() Check if the LAMMPS library supports creating movie files via a pipe to ffmpeg. .. versionadded:: 3Nov2022 The LAMMPS :doc:`dump style movie ` supports generating movies from images on-the-fly via creating a pipe to the `ffmpeg `_ program. This function checks whether this feature was :ref:`enabled at compile time `. It does **not** check whether the ``ffmpeg`` itself is installed and usable. :to: :cpp:func:`lammps_config_has_ffmpeg_support` :r has_ffmpeg: :rtype has_ffmpeg: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2316: ERROR: Unknown directive type "f:function". .. f:function:: config_has_exceptions() Check whether LAMMPS errors will throw C++ exceptions. .. versionadded:: 3Nov2022 When using the library interface, the library interface functions will "catch" exceptions, and then the error status can be checked by calling :f:func:`has_error`. The most recent error message can be retrieved via :f:func:`get_last_error_message`. This allows to restart a calculation or delete and recreate the LAMMPS instance when a C++ exception occurs. One application of using exceptions this way is the :ref:`lammps_shell`. :to: :cpp:func:`lammps_config_has_exceptions` :r has_exceptions: :rtype has_exceptions: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2336: ERROR: Unknown directive type "f:function". .. f:function:: config_has_package(name) Check whether a specific package has been included in LAMMPS .. versionadded:: 3Nov2022 This function checks whether the LAMMPS library in use includes the specific :doc:`LAMMPS package ` provided as argument. :to: :cpp:func:`lammps_config_has_package` :r has_package: :rtype has_package: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2351: ERROR: Unknown directive type "f:function". .. f:function:: config_package_count() Count the number of installed packages in the LAMMPS library. .. versionadded:: 3Nov2022 This function counts how many :doc:`LAMMPS packages ` are included in the LAMMPS library in use. It directly calls the C library function :cpp:func:`lammps_config_package_count`. :to: :cpp:func:`lammps_config_package_count` :r integer(c_int) npackages: number of packages installed WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2366: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: config_package_name(idx, buffer) Get the name of a package in the list of installed packages in the LAMMPS library. .. versionadded:: 3Nov2022 This subroutine copies the name of the package with the index *idx* into the provided string *buffer*. If the name of the package exceeds the length of the buffer, it will be truncated accordingly. If the index is out of range, *buffer* is set to an empty string. :p integer(c_int) idx: index of the package in the list of included packages :math:`(0 \le idx < \text{package count})` :p character(len=\*) buffer: string to hold the name of the package :to: :cpp:func:`lammps_config_package_name` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2385: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: installed_packages(package[, length]) Obtain a list of the names of enabled packages in the LAMMPS shared library and store it in *package*. .. versionadded:: 3Nov2022 This function is analogous to the :py:meth:`installed_packages ` function in the Python API. The optional argument *length* sets the length of each string in the vector *package* (default: 31). :p character(len=:) package [dimension(:),allocatable]: list of packages; *must* have the ``ALLOCATABLE`` attribute and be of rank 1 (i.e., ``DIMENSION(:)``) with allocatable length. :o length: length of each string in the list. Default: 31. :otype length: integer,optional :to: :cpp:func:`lammps_config_package_count` :to: :cpp:func:`lammps_config_package_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2407: ERROR: Unknown directive type "f:function". .. f:function:: config_accelerator(package, category, setting) This function calls :cpp:func:`lammps_config_accelerator` to check the availability of compile time settings of included :doc:`accelerator packages ` in LAMMPS. .. versionadded:: 3Nov2022 Supported packages names are "GPU", "KOKKOS", "INTEL", and "OPENMP". Supported categories are "api" with possible settings "cuda", "hip", "phi", "pthreads", "opencl", "openmp", and "serial"; and "precision" with possible settings "double", "mixed", and "single". :p character(len=\*) package: string with the name of the accelerator package :p character(len=\*) category: string with the name of the setting :p character(len=\*) setting: string with the name of the specific setting :to: :cpp:func:`lammps_config_accelerator` :r available: ``.TRUE.`` if the combination of package, category, and setting is available, otherwise ``.FALSE.``. :rtype available: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2432: ERROR: Unknown directive type "f:function". .. f:function:: has_gpu_device() Checks for the presence of a viable GPU package device. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_has_gpu_device`, which checks at runtime whether an accelerator device is present that can be used with the :doc:`GPU package `. More detailed information about the available device or devices can be obtained by calling the :f:subr:`get_gpu_device_info` subroutine. :to: :cpp:func:`lammps_has_gpu_device` :r available: ``.TRUE.`` if a viable device is available, ``.FALSE.`` if not. :rtype available: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2452: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_gpu_device_info(buffer) Get GPU package device information. .. versionadded:: 3Nov2022 Calls :cpp:func:`lammps_get_gpu_device_info` to retrieve detailed information about any accelerator devices that are viable for use with the :doc:`GPU package `. It will fill *buffer* with a string that is equivalent to the output of the ``nvc_get_device`` or ``ocl_get_device`` or ``hip_get_device`` tools that are compiled alongside LAMMPS if the GPU package is enabled. A suitable-length Fortran string has to be provided. The assembled text will be truncated so as not to overflow this buffer. This string can be several kilobytes long if multiple devices are present. :p character(len=\*) buffer: string into which to copy the information. :to: :cpp:func:`lammps_get_gpu_device_info` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2474: ERROR: Unknown directive type "f:function". .. f:function:: has_style(category, name) Check whether a specific style has been included in LAMMPS. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_has_style` to check whether the LAMMPS library in use includes the specific style *name* associated with a specific *category* provided as arguments. Please see :cpp:func:`lammps_has_style` for a list of valid categories. :p character(len=\*) category: category of the style :p character(len=\*) name: name of the style :to: :cpp:func:`lammps_has_style` :r has_style: ``.TRUE.`` if included, ``.FALSE.`` if not. :rtype has_style: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2493: ERROR: Unknown directive type "f:function". .. f:function:: style_count(category) Count the number of styles of *category* in the LAMMPS library. .. versionadded:: 3Nov2022 This function counts how many styles in the provided *category* are included in the LAMMPS library currently in use. Please see :cpp:func:`lammps_has_style` for a list of valid categories. :p character(len=\*) category: category of styles to count :to: :cpp:func:`lammps_style_count` :r integer(c_int) count: number of styles in *category* WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2509: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: style_name(category, idx, buffer) Look up the name of a style by index in the list of styles of a given category in the LAMMPS library. .. versionadded:: 3Nov2022 This function calls :cpp:func:`lammps_style_name` and copies the name of the *category* style with index *idx* into the provided string *buffer*. The length of *buffer* must be long enough to contain the name of the style; if it is too short, the name will be truncated accordingly. If *idx* is out of range, *buffer* will be the empty string and a warning will be issued. :p character(len=\*) category: category of styles :p integer(c_int) idx: index of the style in the list of *category* styles :math:`(1 \leq idx \leq \text{style count})` :p character(len\*) buffer: string buffer to copy the name of the style into :to: :cpp:func:`lammps_style_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2532: ERROR: Unknown directive type "f:function". .. f:function:: has_id(category, name) This function checks if the current LAMMPS instance a *category* ID of the given *name* exists. Valid categories are: *compute*\ , *dump*\ , *fix*\ , *group*\ , *molecule*\ , *region*\ , and *variable*\ . .. versionadded:: 3Nov2022 :p character(len=\*) category: category of the ID :p character(len=\*) name: name of the ID :to: :cpp:func:`lammps_has_id` :r has_id: ``.TRUE.`` if *category* style *name* exists, ``.FALSE.`` if not. :rtype has_id: logical WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2548: ERROR: Unknown directive type "f:function". .. f:function:: id_count(category) This function counts how many IDs in the provided *category* are defined in the current LAMMPS instance. Please see :f:func:`has_id` for a list of valid categories. .. versionadded:: 3Nov2022 :p character(len=\*) category: category of the ID :to: :cpp:func:`lammps_id_count` :r count: number of IDs in *category* :rtype count: integer(c_int) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2563: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: id_name(category, idx, buffer) Look up the name of an ID by index in the list of IDs of a given category. .. versionadded:: 3Nov2022 This function copies the name of the *category* ID with the index *idx* into the provided string *buffer*\ . The length of the buffer must be long enough to hold the string; if the name of the style exceeds the length of the buffer, it will be truncated accordingly. If *buffer* is ``ALLOCATABLE``, it must be allocated *before* the function is called. If *idx* is out of range, *buffer* is set to an empty string and a warning is issued. :p character(len=\*) category: category of IDs :p integer(c_int) idx: index of the ID in the list of *category* styles (:math:`0 \leq idx < count`) :p character(len=\*) buffer: string into which to copy the name of the style :to: :cpp:func:`lammps_id_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2586: ERROR: Unknown directive type "f:function". .. f:function:: plugin_count() This function counts the number of loaded plugins. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_plugin_count` :r n: number of loaded plugins :rtype n: integer(c_int) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2598: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: plugin_name(idx, stylebuf, namebuf) Look up the style and name of a plugin by its index in the list of plugins. .. versionadded:: 3Nov2022 This function copies the name of the *style* plugin with the index *idx* into the provided C-style string buffer. The length of the buffer must be provided as *buf_size* argument. If the name of the style exceeds the length of the buffer, it will be truncated accordingly. If the index is out of range, both strings are set to the empty string and a warning is printed. :p integer(c_int) idx: index of the plugin in the list all or *style* plugins :p character(len=\*) stylebuf: string into which to copy the style of the plugin :p character(len=\*) namebuf: string into which to copy the style of the plugin :to: :cpp:func:`lammps_plugin_name` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2621: ERROR: Unknown directive type "f:function". .. f:function:: encode_image_flags(ix, iy, iz) Encodes three integer image flags into a single imageint. .. versionadded:: 3Nov2022 This function performs the bit-shift, addition, and bit-wise OR operations necessary to combine the values of three integers representing the image flags in the :math:`x`-, :math:`y`-, and :math:`z`-directions. Unless LAMMPS is compiled with ``-DLAMMPS_BIGBIG``, those integers are limited to 10-bit signed integers :math:`[-512,512)`. If ``-DLAMMPS_BIGBIG`` was used when compiling, then the return value is of kind ``c_int64_t`` instead of kind ``c_int``, and the valid range for the individual image flags becomes :math:`[-1048576,1048575)` (i.e., the range of a 21-bit signed integer). There is no check on whether the arguments conform to these requirements; values out of range will simply be wrapped back into the interval. :p integer(c_int) ix: image flag in :math:`x`-direction :p integer(c_int) iy: image flag in :math:`y`-direction :p integer(c_int) iz: image flag in :math:`z`-direction :r integer(kind=\*) imageint: encoded image flag. \*The ``KIND`` parameter is ``c_int`` unless LAMMPS was built with ``-DLAMMPS_BIGBIG``, in which case it is ``c_int64_t``. .. note:: The fact that the programmer does not know the ``KIND`` parameter of the return value until compile time means that it is impossible to define an interface that works for both sizes of ``imageint``. One side effect of this is that you must assign the return value of this function to a variable; it cannot be used as the argument to another function or as part of an array constructor. For example, .. code-block:: fortran my_images = [lmp%encode_image_flags(0,0,0), lmp%encode_image_flags(1,0,0)] will *not* work; instead, do something like .. code-block:: fortran my_images(1) = lmp%encode_image_flags(0,0,0) my_images(2) = lmp%encode_image_flags(1,0,0) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2667: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: decode_image_flags(image, flags) This function does the reverse operation of :f:func:`encode_image_flags`: it takes the image flag and performs the bit-shift and bit-masking operations to decode it and stores the resulting three integers into the array *flags*. .. versionadded:: 3Nov2022 :p integer(kind=\*) image: encoded image flag. \*The ``KIND`` parameter is either ``c_int`` or, if LAMMPS was compiled with ``-DLAMMPS_BIGBIG``, ``c_int64_t``. Kind compatibility is checked at run-time. :p integer(c_int) flags [dimension(3)]: three-element vector where the decoded image flags will be stored. WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2684: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_fix_external_callback(id, callback, caller) Set the callback function for a :doc:`fix external ` instance with the given ID. .. versionadded:: 22Dec2022 Fix :doc:`external ` allows programs that are running LAMMPS through its library interface to modify certain LAMMPS properties on specific time steps, similar to the way other fixes do. This subroutine sets the callback function for use with the "pf/callback" mode. The function should have Fortran language bindings with the following interface, which depends on how LAMMPS was compiled: .. code-block:: fortran ABSTRACT INTERFACE SUBROUTINE external_callback(caller, timestep, ids, x, fexternal) USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t CLASS(*), INTENT(INOUT) :: caller INTEGER(c_bigint), INTENT(IN) :: timestep INTEGER(c_tagint), DIMENSION(:), INTENT(IN) :: ids REAL(c_double), DIMENSION(:,:), INTENT(IN) :: x REAL(c_double), DIMENSION(:,:), INTENT(OUT) :: fexternal END SUBROUTINE external_callback END INTERFACE where ``c_bigint`` is ``c_int`` if ``-DLAMMPS_SMALLSMALL`` was used and ``c_int64_t`` otherwise; and ``c_tagint`` is ``c_int64_t`` if ``-DLAMMPS_BIGBIG`` was used and ``c_int`` otherwise. The argument *caller* to :f:subr:`set_fix_external_callback` is unlimited polymorphic (i.e., it can be any Fortran object you want to pass to the calling function) and will be available as the first argument to the callback function. It can be your LAMMPS instance, which you might need if the callback function needs access to the library interface. The argument must be a scalar; to pass non-scalar data, wrap those data in a derived type and pass an instance of the derived type to *caller*. The array *ids* is an array of length *nlocal* (as accessed from the :cpp:class:`Atom` class or through :f:func:`extract_global`). The arrays *x* and *fexternal* are :math:`3 \times {}`\ *nlocal* arrays; these are transposed from what they would look like in C (see note about array index order at :f:func:`extract_atom`). The callback mechanism is one of two ways that forces can be applied to a simulation with the help of :doc:`fix external `. The alternative is *array* mode, where one calls :f:func:`fix_external_get_force`. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and couple it with external programs. :p character(len=*) id: ID of :doc:`fix external ` instance :p callback: subroutine :doc:`fix external ` should call :ptype callback: external :p class(*) caller [optional]: object you wish to pass to the callback procedure (must be a scalar; see note) :to: :cpp:func:`lammps_set_fix_external_callback` .. note:: The interface for your callback function must match types precisely with the abstract interface block given above. **The compiler probably will not be able to check this for you.** In particular, the first argument ("caller") must be of type ``CLASS(*)`` or you will probably get a segmentation fault or at least a misinterpretation of whatever is in memory there. You can resolve the object using the ``SELECT TYPE`` construct. An example callback function (assuming LAMMPS was compiled with ``-DLAMMPS_SMALLBIG``) that applies something akin to Hooke's Law (with each atom having a different *k* value) is shown below. .. code-block:: fortran MODULE stuff USE, INTRINSIC :: ISO_C_BINDING, ONLY : c_int, c_double, c_int64_t USE, INTRINSIC :: ISO_FORTRAN_ENV, ONLY : error_unit IMPLICIT NONE TYPE shield REAL(c_double), DIMENSION(:,:), ALLOCATABLE :: k ! assume k gets allocated to dimension(3,nlocal) at some point ! and assigned values END TYPE shield SUBROUTINE my_callback(caller, timestep, ids, x, fexternal) CLASS(*), INTENT(INOUT) :: caller INTEGER(c_int), INTENT(IN) :: timestep INTEGER(c_int64_t), INTENT(IN) :: ids REAL(c_double), INTENT(IN) :: x(:,:) REAL(c_double), INTENT(OUT) :: fexternal(:,:) SELECT TYPE (caller) TYPE IS (shield) fexternal = - caller%k * x CLASS DEFAULT WRITE(error_unit,*) 'UH OH...' END SELECT END SUBROUTINE my_callback END MODULE stuff ! then, when assigning the callback function, do this: PROGRAM example USE LIBLAMMPS USE stuff TYPE(lammps) :: lmp TYPE(shield) :: my_shield lmp = lammps() CALL lmp%command('fix ext all external pf/callback 1 1') CALL lmp%set_fix_external_callback('ext', my_callback, my_shield) END PROGRAM example WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2800: ERROR: Unknown directive type "f:function". .. f:function:: fix_external_get_force(id) Get pointer to the force array storage in a fix external instance with the given ID. .. versionadded:: 22Dec2022 Fix :doc:`external ` allows programs that are running LAMMPS through its library interfaces to add or modify certain LAMMPS properties on specific time steps, similar to the way other fixes do. This function provides access to the per-atom force storage in a fix external instance with the given fix-ID to be added to the individual atoms when using the "pf/array" mode. The *fexternal* array can be accessed like other "native" per-atom arrays accessible via the :f:func:`extract_atom` function. Please note that the array stores the forces for *local* atoms for each MPI rank, in the order determined by the neighbor list build. Because the underlying data structures can change as well as the order of atom as they migrate between MPI processes because of the domain decomposition parallelization, this function should be always called immediately before the forces are going to be set to get an up-to-date pointer. You can use, for example, :f:func:`extract_setting` to obtain the number of local atoms `nlocal` and then assume the dimensions of the returned force array as ``REAL(c_double) :: force(3,nlocal)``. This function is an alternative to the callback mechanism in fix external set up by :f:subr:`set_fix_external_callback`. The main difference is that this mechanism can be used when forces are to be pre-computed and the control alternates between LAMMPS and the external driver, while the callback mechanism can call an external subroutine to compute the force when the fix is triggered and needs them. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: ID of :doc:`fix external ` instance :to: :cpp:func:`lammps_fix_external_get_force` :r fexternal: pointer to the per-atom force array allocated by the fix :rtype fexternal: real(c_double),dimension(3,nlocal) WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2844: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_energy_global(id, eng) Set the global energy contribution for a :doc:`fix external ` instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:func:`set_fix_external_callback` and :f:func:`fix_external_get_force` that also sets the contribution to the global energy from the external program. The value of the *eng* argument will be stored in the fix and applied on the current and all following time steps until changed by another call to this function. The energy is in energy units as determined by the current :doc:`units ` settings and is the **total** energy of the contribution. Thus, when running in parallel, all MPI processes have to call this function with the **same** value, and this will be returned as a scalar property of the fix external instance when accessed in LAMMPS input commands or from variables. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p real(c_double) eng: total energy to be added to the global energy :to: :cpp:func:`lammps_fix_external_set_energy_global` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2872: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_virial_global(id, virial) Set the global virial contribution for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the contribution to the global virial from an external program. The six values of the *virial* array will be stored in the fix and applied on the current and all following time steps until changed by another call to this function. The components of the virial need to be stored in the following order: *xx*, *yy*, *zz*, *xy*, *xz*, *yz*. In LAMMPS, the virial is stored internally as `stress*volume` in units of `pressure*volume` as determined by the current :doc:`units ` settings and is the **total** contribution. Thus, when running in parallel, all MPI processes have to call this function with the **same** value, and this will then be added by fix external. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: fix ID of fix external instance :p real(c_double) virial [dimension(6)]: the six global stress tensor components to be added to the global virial :to: :cpp:func:`lammps_fix_external_set_virial_global` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2904: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_energy_peratom(id, eng) Set the per-atom energy contribution for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` to set the per-atom energy contribution due to the fix from the external program as part of the callback function. For this to work, the LAMMPS object must be passed as part of the *caller* argument when registering the callback function, or the callback function must otherwise have access to the LAMMPS object, such as through a module-based pointer. .. note:: This function is fully independent from :f:subr:`fix_external_set_energy_global` and will **NOT** add any contributions to the global energy tally and will **NOT** check whether the sum of the contributions added here are consistent with the global added energy. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: fix ID of the fix external instance :p real(c_double) eng [dimension(:)]: array of length *nlocal* containing the energy to add to the per-atom energy :to: :cpp:func:`lammps_fix_external_set_energy_peratom` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2937: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: set_fix_external_set_virial_peratom(id, virial) This is a companion function to :f:subr:`set_fix_external_callback` to set the per-atom virial contribution due to the fix from the external program as part of the callback function. For this to work, the LAMMPS object must be passed as the *caller* argument when registering the callback function. .. versionadded:: 22Dec2022 .. note:: This function is fully independent from :f:subr:`fix_external_set_virial_global` and will **NOT** add any contributions to the global virial tally and **NOT** check whether the sum of the contributions added here are consistent with the global added virial. The order and units of the per-atom stress tensor elements are the same as for the global virial. The type and dimensions of the per-atom virial array must be ``REAL(c_double), DIMENSION(6,nlocal)``. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p real(c_double) virial [dimension(:,:)]: an array of :math:`6 \times{}`\ *nlocal* components to be added to the per-atom virial :to: :cpp:func:`lammps_set_virial_peratom` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2969: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_vector_length(id, length) Set the vector length for a global vector stored with fix external for analysis. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the length of a global vector of properties that will be stored with the fix via :f:subr:`fix_external_set_vector`. This function needs to be called **before** a call to :f:subr:`fix_external_set_vector` and **before** a run or minimize command. When running in parallel, it must be called from **all** MPI processes with the same length argument. Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external program. :p character(len=*) id: fix ID of fix external instance :p integer(c_int) length: length of the global vector to be stored with the fix :to: :cpp:func:`lammps_fix_external_set_vector_length` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:2997: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: fix_external_set_vector(id, idx, val) Store a global vector value for a fix external instance with the given ID. .. versionadded:: 22Dec2022 This is a companion function to :f:subr:`set_fix_external_callback` and :f:func:`fix_external_get_force` to set the values of a global vector of properties that will be stored with the fix and can be accessed from within LAMMPS input commands (e.g., fix ave/time or variables) when used in a vector context. This function needs to be called **after** a call to :f:subr:`fix_external_set_vector_length` and **before** a run or minimize command. When running in parallel, it must be called from **all** MPI processes with the **same** *idx* and *val* parameters. The variable *val* is assumed to be extensive. .. note:: The index in the *idx* parameter is 1-based (i.e., the first element is set with *idx*\ :math:`{} = 1`, and the last element of the vector with *idx*\ :math:`{} = N`, where :math:`N` is the value of the *length* parameter of the call to :f:subr:`fix_external_set_vector_length`). Please see the documentation for :doc:`fix external ` for more information about how to use the fix and how to couple it with an external code. :p character(len=*) id: ID of fix external instance :p integer(c_int) idx: 1-based index in global vector :p integer(c_int) val: value to be stored in global vector at index *idx* :to: :cpp:func:`lammps_fix_external_set_vector` WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3033: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: flush_buffers() This function calls :cpp:func:`lammps_flush_buffers`, which flushes buffered output to be written to screen and logfile. This can simplify capturing output from LAMMPS library calls. .. versionadded:: 3Nov2022 :to: :cpp:func:`lammps_flush_buffers` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3045: ERROR: Unknown directive type "f:function". .. f:function:: is_running() Check if LAMMPS is currently inside a run or minimization. .. versionadded:: 3Nov2022 This function can be used from signal handlers or multi-threaded applications to determine if the LAMMPS instance is currently active. :to: :cpp:func:`lammps_is_running` :r is_running: ``.FALSE.`` if idle or ``.TRUE.`` if active :rtype is_running: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3060: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: force_timeout() Force a timeout to stop an ongoing run cleanly. .. versionadded:: 3Nov2022 This function can be used from signal handlers or multi-threaded applications to terminate an ongoing run cleanly. :to: :cpp:func:`lammps_force_timeout` WARNING: unknown directive or role name: f:function /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3073: ERROR: Unknown directive type "f:function". .. f:function:: has_error() Check if there is a (new) error message available. .. versionadded:: 3Nov2022 This function can be used to query if an error inside of LAMMPS has thrown a :ref:`C++ exception `. :to: :cpp:func:`lammps_has_error` :r has_error: ``.TRUE.`` if there is an error. :rtype has_error: logical WARNING: unknown directive or role name: f:subroutine /build/reproducible-path/lammps-20240207+dfsg/doc/src/Fortran.rst:3088: ERROR: Unknown directive type "f:subroutine". .. f:subroutine:: get_last_error_message(buffer[,status]) Copy the last error message into the provided buffer. .. versionadded:: 3Nov2022 This function can be used to retrieve the error message that was set in the event of an error inside of LAMMPS that resulted in a :ref:`C++ exception `. A suitable buffer for a string has to be provided. If the internally-stored error message is longer than the string, it will be truncated accordingly. The optional argument *status* indicates the kind of error: a "1" indicates an error that occurred on all MPI ranks and is often recoverable, while a "2" indicates an abort that would happen only in a single MPI rank and thus may not be recoverable, as other MPI ranks may be waiting on the failing MPI rank(s) to send messages. :p character(len=\*) buffer: string buffer to copy the error message into :o integer(c_int) status [optional]: 1 when all ranks had the error, 2 on a single-rank error. :to: :cpp:func:`lammps_get_last_error_message` looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 50%] Library writing output... [100%] Manual generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 196 warnings. The HTML pages are in html. ############################################ env: 'rst_anchor_check': No such file or directory Found 89 packages Parsed style names w/o suffixes from C++ tree in ../src: Angle styles: 26 Atom styles: 28 Body styles: 3 Bond styles: 25 Command styles: 51 Compute styles: 169 Dihedral styles: 17 Dump styles: 34 Fix styles: 265 Improper styles: 14 Integrate styles: 4 Kspace styles: 21 Minimize styles: 9 Pair styles: 287 Reader styles: 4 Region styles: 9 ---------------------------------------------------- Total number of styles (including suffixes): 1784 Total number of style index entries: 1278 ############################################ Build finished. The HTML pages are in doc/html. make[2]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/doc' make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' mkdir test; cp examples/crack/* test/ cd test; /build/reproducible-path/lammps-20240207+dfsg/debian/build/lmp < in.crack LAMMPS (7 Feb 2024 - Update 1) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 1 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) create_atoms CPU = 0.004 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary 7537 atoms in group mobile 841 atoms in group leftupper 841 atoms in group leftlower Setting atom values ... 841 settings made for type Setting atom values ... 841 settings made for type Setting atom values ... 302 settings made for type Setting atom values ... 302 settings made for type WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 1 steps, delay = 5 steps, check = yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 80 56 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/2d bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.003 Per MPI rank memory allocation (min/avg/max) = 2.8 | 2.8 | 2.8 Mbytes Step Temp E_pair E_mol TotEng Press Volume 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 Loop time of 14.508 on 1 procs for 5000 steps with 8141 atoms Performance: 89330.076 tau/day, 344.638 timesteps/s, 2.806 Matom-step/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 12.217 | 12.217 | 12.217 | 0.0 | 84.21 Neigh | 0.53309 | 0.53309 | 0.53309 | 0.0 | 3.67 Comm | 0.022063 | 0.022063 | 0.022063 | 0.0 | 0.15 Output | 0.0032066 | 0.0032066 | 0.0032066 | 0.0 | 0.02 Modify | 1.354 | 1.354 | 1.354 | 0.0 | 9.33 Other | | 0.379 | | | 2.61 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 71389 ave 71389 max 71389 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 71389 Ave neighs/atom = 8.7690701 Neighbor list builds = 100 Dangerous builds = 0 Total wall time: 0:00:14 rm -rf test make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3,sphinxdoc --sourcedirectory=cmake --builddirectory=/build/reproducible-path/lammps-20240207+dfsg/debian/build dh_testroot -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_prep -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_auto_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps-doc -Nlammps-data -Nlammps-examples cd debian/build && make -j4 install DESTDIR=/build/reproducible-path/lammps-20240207\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' /usr/bin/cmake -P /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/lammps-20240207+dfsg/cmake -B/build/reproducible-path/lammps-20240207+dfsg/debian/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/bin/lmp -- Set non-toolchain portion of runtime path of "/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/bin/lmp" to "" -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/angle.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/atom.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/bond.h -- Installing: 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/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/timer.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/universe.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/update.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/utils.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/variable.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/fmt/core.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/include/lammps/fmt/format.h -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so.0" to "" -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/liblammps.so -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig/liblammps.pc -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPS_Targets.cmake -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPS_Targets-none.cmake -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPSConfig.cmake -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/LAMMPS/LAMMPSConfigVersion.cmake -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/share/man/man1/lmp.1 -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/etc/profile.d/lammps.sh -- Installing: /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/etc/profile.d/lammps.csh make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' debian/rules execute_after_dh_auto_install-arch make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' LD_LIBRARY_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf \ CMAKE_PREFIX_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake \ pybuild --dir=/build/reproducible-path/lammps-20240207+dfsg/python --system=pyproject --name=lammps ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:305: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. * Building wheel... ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps copying lammps/pylammps.py -> build/lib/lammps copying lammps/core.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps creating build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap copying lammps/mliap/loader.py -> build/lib/lammps/mliap installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/__init__.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/data.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/core.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/constants.py -> build/bdist.linux-armv7l/wheel/lammps creating build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/formats.py -> build/bdist.linux-armv7l/wheel/lammps running install_egg_info running egg_info creating lammps.egg-info writing lammps.egg-info/PKG-INFO writing dependency_links to lammps.egg-info/dependency_links.txt writing top-level names to lammps.egg-info/top_level.txt writing manifest file 'lammps.egg-info/SOURCES.txt' reading manifest file 'lammps.egg-info/SOURCES.txt' writing manifest file 'lammps.egg-info/SOURCES.txt' Copying lammps.egg-info to build/bdist.linux-armv7l/wheel/lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/lammps-2024.2.7.dist-info/WHEEL creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-h0pkodsr/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' adding 'lammps/data.py' adding 'lammps/formats.py' adding 'lammps/numpy_wrapper.py' adding 'lammps/pylammps.py' adding 'lammps/mliap/__init__.py' adding 'lammps/mliap/loader.py' adding 'lammps/mliap/mliap_unified_abc.py' adding 'lammps/mliap/mliap_unified_lj.py' adding 'lammps/mliap/pytorch.py' adding 'lammps-2024.2.7.dist-info/METADATA' adding 'lammps-2024.2.7.dist-info/WHEEL' adding 'lammps-2024.2.7.dist-info/top_level.txt' adding 'lammps-2024.2.7.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Successfully built lammps-2024.2.7-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild base:305: cd /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/build; python3.12 -m unittest discover -v ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:305: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.11_lammps ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. * Building wheel... ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps copying lammps/pylammps.py -> build/lib/lammps copying lammps/core.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/formats.py -> build/lib/lammps creating build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap copying lammps/mliap/__init__.py -> build/lib/lammps/mliap copying lammps/mliap/loader.py -> build/lib/lammps/mliap installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/__init__.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/data.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/pylammps.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/core.py -> build/bdist.linux-armv7l/wheel/lammps copying build/lib/lammps/constants.py -> build/bdist.linux-armv7l/wheel/lammps creating build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-armv7l/wheel/lammps/mliap copying build/lib/lammps/formats.py -> build/bdist.linux-armv7l/wheel/lammps running install_egg_info running egg_info creating lammps.egg-info writing lammps.egg-info/PKG-INFO writing dependency_links to lammps.egg-info/dependency_links.txt writing top-level names to lammps.egg-info/top_level.txt writing manifest file 'lammps.egg-info/SOURCES.txt' reading manifest file 'lammps.egg-info/SOURCES.txt' writing manifest file 'lammps.egg-info/SOURCES.txt' Copying lammps.egg-info to build/bdist.linux-armv7l/wheel/lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/lammps-2024.2.7.dist-info/WHEEL creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.11_lammps/.tmp-c5pzi2dr/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' adding 'lammps/data.py' adding 'lammps/formats.py' adding 'lammps/numpy_wrapper.py' adding 'lammps/pylammps.py' adding 'lammps/mliap/__init__.py' adding 'lammps/mliap/loader.py' adding 'lammps/mliap/mliap_unified_abc.py' adding 'lammps/mliap/mliap_unified_lj.py' adding 'lammps/mliap/pytorch.py' adding 'lammps-2024.2.7.dist-info/METADATA' adding 'lammps-2024.2.7.dist-info/WHEEL' adding 'lammps-2024.2.7.dist-info/top_level.txt' adding 'lammps-2024.2.7.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Successfully built lammps-2024.2.7-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir I: pybuild base:305: cd /build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.11_lammps/build; python3.11 -m unittest discover -v ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_install -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_installdocs -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_sphinxdoc make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' echo "sphinx and dh_sphinx are broken for lammps docs. See Bug#1059621" sphinx and dh_sphinx are broken for lammps docs. See Bug#1059621 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_installchangelogs -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' dh_installexamples -X.gitignore make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' debian/rules override_dh_installman-arch make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' sed -i 's|TH LAMMPS|TH LAMMPS \"1\"|g' /build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/share/man/man1/lmp.1 dh_installman -a make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_installman -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps debian/rules execute_before_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' set -e; \ cd python/examples; \ LD_LIBRARY_PATH=/build/reproducible-path/lammps-20240207+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf \ PYTHONPATH=/build/reproducible-path/lammps-20240207+dfsg/debian/python3-lammps/usr/lib/python3.11/dist-packages:${PYTHONPATH} \ python3 demo.py ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. ERROR: ld.so: object 'libfakeroot-sysv.so' from LD_PRELOAD cannot be preloaded (cannot open shared object file): ignored. LAMMPS (7 Feb 2024 - Update 1) Python output: Natoms, mass, x[0][0] coord = 4000 1.0 16.651271530416228 Temperature from compute = 0.7683848148006243 Energy from equal-style variable = -5.774392400140558 Velocity component from atom-style variable = -0.16696430269966717 Volume from get_thermo = 4738.213693437576 Natoms from get_natoms = 4000 Global coords from gather_atoms = 16.651271530416228 16.79001077301678 0.19047524160173676 Changed x[0][0] via scatter_atoms = 17.651271530416228 OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 1 by 1 by 1 MPI processor grid Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) create_atoms CPU = 0.002 seconds Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update: every = 20 steps, delay = 0 steps, check = no max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 12 12 12 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.005 Per MPI rank memory allocation (min/avg/max) = 3.513 | 3.513 | 3.513 Mbytes Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 100 0.76838481 -5.7743924 0 -4.6221033 0.13682061 Loop time of 0.608058 on 1 procs for 100 steps with 4000 atoms Performance: 71045.838 tau/day, 164.458 timesteps/s, 657.832 katom-step/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.51093 | 0.51093 | 0.51093 | 0.0 | 84.03 Neigh | 0.066816 | 0.066816 | 0.066816 | 0.0 | 10.99 Comm | 0.014756 | 0.014756 | 0.014756 | 0.0 | 2.43 Output | 6.9598e-05 | 6.9598e-05 | 6.9598e-05 | 0.0 | 0.01 Modify | 0.01227 | 0.01227 | 0.01227 | 0.0 | 2.02 Other | | 0.00322 | | | 0.53 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5758 ave 5758 max 5758 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 150488 ave 150488 max 150488 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 150488 Ave neighs/atom = 37.622 Neighbor list builds = 5 Dangerous builds not checked Total wall time: 0:00:00 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_python3 -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_installsystemduser -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_lintian -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_perl -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_link -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_strip_nondeterminism -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' dh_compress -X.pdf make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_fixperms -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules execute_after_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' find /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ -type f -a -not -name *.sh -print -exec chmod 644 {} \; /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.bcc.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/in.icos /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/in.bcc /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.bcc.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.icos.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/in.fcc /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.icos.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.fcc.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/steinhardt/log.13Sept18.fcc.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/data.CHO /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/buck.inc /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/in.qeq.buck /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/data.aC /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/param.qeq.reax /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/in.qeq.reaxff /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.20Apr21.qeq.buck.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.30Nov23.reaxff.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.30Nov23.reaxff.g++.4 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/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Cu2O.elastic.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Si.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Cu.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb.Si.elastic /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Si.elastic.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.m-HfO2 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb3 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb.HfO2 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/elastic.f90 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Cu2O.elastic.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/lib.comb3 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb.Cu /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.HfO2.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/README /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.HfO2.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.CuaS /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb3.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.t-HfO2 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.c-HfO2 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb.Si /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.comb3-OHCCu /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Si.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/in.comb.Cu2O.elastic /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb3.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/data.Cu2O /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Cu.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/comb/log.27Nov18.comb.Si.elastic.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.box.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.box.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/in.min.box /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.g++.4 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/log.27Nov18.min.g++.1 /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/min/in.min make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' dh_dwz -Xliblammps.so.0 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_strip -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_makeshlibs -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_shlibdeps -a -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/liblammps0t64/usr/lib/arm-linux-gnueabihf/liblammps.so.0 found in none of the libraries dh_installdeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_gencontrol -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-gencontrol: warning: Depends field of package lammps-doc: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package python3-lammps: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package liblammps-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package lammps-examples: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-1.1_all.deb'. dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-1.1_all.deb'. dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-1.1_armhf.deb'. dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-1.1_all.deb'. dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-1.1_armhf.buildinfo dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-1.1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/25750/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/25750/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25750 and its subdirectories I: Current time: Sun Mar 31 10:55:26 +14 2024 I: pbuilder-time-stamp: 1711832126