Tue Apr 25 11:08:08 UTC 2023 I: starting to build bustools/bookworm/amd64 on jenkins on '2023-04-25 11:07' Tue Apr 25 11:08:08 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_12/32169/console.log Tue Apr 25 11:08:08 UTC 2023 I: Downloading source for bookworm/bustools=0.42.0+dfsg-1 --2023-04-25 11:08:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/bustools/bustools_0.42.0%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1462 (1.4K) [text/prs.lines.tag] Saving to: ‘bustools_0.42.0+dfsg-1.dsc’ 0K . 100% 103M=0s 2023-04-25 11:08:08 (103 MB/s) - ‘bustools_0.42.0+dfsg-1.dsc’ saved [1462/1462] Tue Apr 25 11:08:08 UTC 2023 I: bustools_0.42.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bustools Binary: bustools Architecture: any Version: 0.42.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Mestiashvili Homepage: https://bustools.github.io/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/bustools Vcs-Git: https://salsa.debian.org/med-team/bustools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, cmake, zlib1g-dev, libeigen3-dev, libcppnumericalsolvers-dev, liblbfgspp-dev Package-List: bustools deb science optional arch=any Checksums-Sha1: 16c30bf4becd4f40a1ffefe0ef25ca737c383c89 302940 bustools_0.42.0+dfsg.orig.tar.xz 2c3d3ffd0e0d2e5e12f9e9d3ea788835729bff85 4988 bustools_0.42.0+dfsg-1.debian.tar.xz Checksums-Sha256: 1a59e4c81f2a10fe2a40011a1a95dd01568f7f45a319a905559b53841e084d90 302940 bustools_0.42.0+dfsg.orig.tar.xz 9cac1ef41b7f0c4753e2c23d7667876fd11d501b5556ecdd7ac0eac6aa7558f4 4988 bustools_0.42.0+dfsg-1.debian.tar.xz Files: 888067af576e02fe037e6cf255725af3 302940 bustools_0.42.0+dfsg.orig.tar.xz 180b85f7fe37f8c1cfca0428880edc86 4988 bustools_0.42.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY7AaTQAKCRAqJ5BL1yQ+ 2pdtAP0bm9OfG7LM4fd2IYJ+FKMQzYh3lksYarI3lGG3HopsUAEA1vkfxVV9Ldc2 +7AmwK6Apbu/cpGZt060mkAWldAA4wo= =zfly -----END PGP SIGNATURE----- Tue Apr 25 11:08:08 UTC 2023 I: Checking whether the package is not for us Tue Apr 25 11:08:08 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Tue Apr 25 11:08:08 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Tue Apr 25 11:17:52 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 27 05:31:11 -12 2024 I: pbuilder-time-stamp: 1716831071 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bustools_0.42.0+dfsg-1.dsc] I: copying [./bustools_0.42.0+dfsg.orig.tar.xz] I: copying [./bustools_0.42.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 23:17:33 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bustools_0.42.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting bustools in bustools-0.42.0+dfsg dpkg-source: info: unpacking bustools_0.42.0+dfsg.orig.tar.xz dpkg-source: info: unpacking bustools_0.42.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying inject_hardening_flags_cmake.patch dpkg-source: info: applying add_lto.patch dpkg-source: info: applying use-packaged-libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/245433/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='48a549528397470a94f011e4915ade00' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='245433' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/pbuilderrc_wWCK --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/b1 --logfile b1/build.log bustools_0.42.0+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/245433/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, cmake, zlib1g-dev, libeigen3-dev, libcppnumericalsolvers-dev, liblbfgspp-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppnumericalsolvers-dev; however: Package libcppnumericalsolvers-dev is not installed. pbuilder-satisfydepends-dummy depends on liblbfgspp-dev; however: Package liblbfgspp-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcppnumericalsolvers-dev{a} libcurl4{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjsoncpp25{a} liblbfgspp-dev{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 58 newly installed, 0 to remove and 0 not upgraded. Need to get 34.6 MB of archives. After unpacking 132 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libcurl4 amd64 7.88.1-8 [386 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libcppnumericalsolvers-dev all 1.0.0-2 [18.1 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 liblbfgspp-dev all 0.1.0-1 [24.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Fetched 34.6 MB in 2s (19.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../05-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.7-1_amd64.deb ... 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Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up pkg-config:amd64 (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up liblbfgspp-dev (0.1.0-1) ... Setting up libcurl4:amd64 (7.88.1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcppnumericalsolvers-dev (1.0.0-2) ... Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/bustools-0.42.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bustools_0.42.0+dfsg-1_source.changes dpkg-buildpackage: info: source package bustools dpkg-buildpackage: info: source version 0.42.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/bustools-0.42.0+dfsg' dh_auto_clean rm -f bustools.1 make[1]: Leaving directory '/build/bustools-0.42.0+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/bustools.substvars debian/files rm -fr -- debian/bustools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bustools-0.42.0+dfsg' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Debug cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=Debug .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done debug mode -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.13") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/bustools-0.42.0+dfsg' rm -f debian/bustools.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/bustools-0.42.0+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bustools-0.42.0+dfsg -B/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu 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/build/bustools-0.42.0+dfsg/src/bustools_capture.cpp cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_clusterhist.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_clusterhist.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_clusterhist.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_clusterhist.cpp [ 24%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_correct.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_collapse.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_collapse.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_collapse.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_collapse.cpp [ 28%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_compress.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_compress.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_compress.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_compress.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_compress.cpp cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_correct.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_correct.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_correct.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_correct.cpp [ 32%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_count.cpp.o [ 40%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_count.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_count.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_count.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_count.cpp [ 36%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_decompress.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_decompress.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_decompress.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_decompress.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_decompress.cpp [ 44%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_extract.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_extract.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_extract.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_extract.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_extract.cpp [ 48%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_linker.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_inspect.cpp [ 52%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_main.cpp.o [ 56%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_mash.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_linker.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_linker.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_linker.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_linker.cpp cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_mash.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_mash.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_mash.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_mash.cpp [ 60%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_merge.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_main.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_main.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_main.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_main.cpp cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_merge.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_merge.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_merge.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_merge.cpp [ 64%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_predict.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_predict.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_predict.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_predict.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_predict.cpp [ 68%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_project.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_project.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_project.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_project.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_project.cpp [ 72%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_sort.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_sort.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_sort.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_sort.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_sort.cpp [ 76%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_text.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_text.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_text.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_text.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_text.cpp [ 80%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_umicorrect.cpp [ 84%] Building CXX object src/CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o -MF CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o.d -o CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_whitelist.cpp [ 88%] Building C object src/CMakeFiles/bustools_core.dir/roaring.c.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cc -I/build/bustools-0.42.0+dfsg/src -I/usr/include/eigen3 -I/usr/include/LBFGSpp -std=c99 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools_core.dir/roaring.c.o -MF CMakeFiles/bustools_core.dir/roaring.c.o.d -o CMakeFiles/bustools_core.dir/roaring.c.o -c /build/bustools-0.42.0+dfsg/src/roaring.c [ 92%] Linking CXX static library libbustools_core.a cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bustools_core.dir/cmake_clean_target.cmake cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bustools_core.dir/link.txt --verbose=1 /usr/bin/ar qc libbustools_core.a CMakeFiles/bustools_core.dir/BUSData.cpp.o CMakeFiles/bustools_core.dir/Common.cpp.o CMakeFiles/bustools_core.dir/bustools_capture.cpp.o CMakeFiles/bustools_core.dir/bustools_clusterhist.cpp.o CMakeFiles/bustools_core.dir/bustools_collapse.cpp.o CMakeFiles/bustools_core.dir/bustools_compress.cpp.o CMakeFiles/bustools_core.dir/bustools_correct.cpp.o CMakeFiles/bustools_core.dir/bustools_count.cpp.o CMakeFiles/bustools_core.dir/bustools_decompress.cpp.o CMakeFiles/bustools_core.dir/bustools_extract.cpp.o CMakeFiles/bustools_core.dir/bustools_inspect.cpp.o CMakeFiles/bustools_core.dir/bustools_linker.cpp.o CMakeFiles/bustools_core.dir/bustools_main.cpp.o CMakeFiles/bustools_core.dir/bustools_mash.cpp.o CMakeFiles/bustools_core.dir/bustools_merge.cpp.o CMakeFiles/bustools_core.dir/bustools_predict.cpp.o CMakeFiles/bustools_core.dir/bustools_project.cpp.o CMakeFiles/bustools_core.dir/bustools_sort.cpp.o CMakeFiles/bustools_core.dir/bustools_text.cpp.o CMakeFiles/bustools_core.dir/bustools_umicorrect.cpp.o CMakeFiles/bustools_core.dir/bustools_whitelist.cpp.o CMakeFiles/bustools_core.dir/roaring.c.o /usr/bin/ranlib libbustools_core.a make[4]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' [ 92%] Built target bustools_core make -f src/CMakeFiles/bustools.dir/build.make src/CMakeFiles/bustools.dir/depend make[4]: Entering directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/bustools-0.42.0+dfsg /build/bustools-0.42.0+dfsg/src /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/bustools.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bustools.dir/build.make src/CMakeFiles/bustools.dir/build make[4]: Entering directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/CMakeFiles/bustools.dir/bustools_main.cpp.o cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/eigen3 -I/usr/include/LBFGSpp -I/build/bustools-0.42.0+dfsg/src -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -g -flto -MD -MT src/CMakeFiles/bustools.dir/bustools_main.cpp.o -MF CMakeFiles/bustools.dir/bustools_main.cpp.o.d -o CMakeFiles/bustools.dir/bustools_main.cpp.o -c /build/bustools-0.42.0+dfsg/src/bustools_main.cpp [100%] Linking CXX executable bustools cd /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bustools.dir/link.txt --verbose=1 /usr/bin/c++ -std=c++11 -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -flto -rdynamic CMakeFiles/bustools.dir/bustools_main.cpp.o -o bustools libbustools_core.a -lpthread -lz -lrt lto-wrapper: warning: using serial compilation of 14 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[4]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' [100%] Built target bustools make[3]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' help2man ./obj-x86_64-linux-gnu/src/bustools > bustools.1 make[1]: Leaving directory '/build/bustools-0.42.0+dfsg' dh_auto_test -O--buildsystem=cmake rm -fr -- /tmp/dh-xdg-rundir-dihWgItP create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake rm -f -- debian/bustools.substvars rm -fr -- debian/.debhelper/generated/bustools/ debian/bustools/ debian/tmp/ dh_auto_install --destdir=debian/bustools/ -O--buildsystem=cmake install -m0755 -d /build/bustools-0.42.0\+dfsg/debian/bustools cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/bustools-0.42.0\+dfsg/debian/bustools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/bustools-0.42.0+dfsg -B/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Debug" -- Installing: /build/bustools-0.42.0+dfsg/debian/bustools/usr/bin/bustools make[1]: Leaving directory '/build/bustools-0.42.0+dfsg/obj-x86_64-linux-gnu' dh_installdocs -O--buildsystem=cmake install -m0755 -d debian/bustools/usr/share/doc/bustools install -p -m0644 debian/copyright debian/bustools/usr/share/doc/bustools/copyright dh_installchangelogs -O--buildsystem=cmake install -m0755 -d debian/bustools/usr/share/doc/bustools install -p -m0644 debian/.debhelper/generated/bustools/dh_installchangelogs.dch.trimmed debian/bustools/usr/share/doc/bustools/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/bustools/usr/share/man/man1/ install -p -m0644 ./bustools.1 debian/bustools/usr/share/man/man1/bustools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/bustools/usr/share/man/man1/bustools.1 mv debian/bustools/usr/share/man/man1/bustools.1.dh-new debian/bustools/usr/share/man/man1/bustools.1 chmod 0644 -- debian/bustools/usr/share/man/man1/bustools.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake cd debian/bustools chmod a-x usr/share/doc/bustools/changelog.Debian usr/share/man/man1/bustools.1 gzip -9nf usr/share/doc/bustools/changelog.Debian usr/share/man/man1/bustools.1 cd '/build/bustools-0.42.0+dfsg' dh_fixperms -O--buildsystem=cmake find debian/bustools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bustools/usr/share/doc -type f -a -true -a ! -regex 'debian/bustools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bustools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/bustools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bustools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bustools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz -- debian/bustools/usr/bin/bustools dh_strip -a -O--buildsystem=cmake install -m0755 -d debian/.debhelper/bustools/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/bustools/usr/bin/bustools debian/.debhelper/bustools/dbgsym-root/usr/lib/debug/.build-id/09/89f6e3673177d1bb4045c34973e246247711bd.debug chmod 0644 -- debian/.debhelper/bustools/dbgsym-root/usr/lib/debug/.build-id/09/89f6e3673177d1bb4045c34973e246247711bd.debug strip --remove-section=.comment --remove-section=.note debian/bustools/usr/bin/bustools objcopy --add-gnu-debuglink debian/.debhelper/bustools/dbgsym-root/usr/lib/debug/.build-id/09/89f6e3673177d1bb4045c34973e246247711bd.debug debian/bustools/usr/bin/bustools install -m0755 -d debian/.debhelper/bustools/dbgsym-root/usr/share/doc ln -s bustools debian/.debhelper/bustools/dbgsym-root/usr/share/doc/bustools-dbgsym install -m0755 -d debian/.debhelper/bustools dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/bustools/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/bustools/DEBIAN dpkg-shlibdeps -Tdebian/bustools.substvars debian/bustools/usr/bin/bustools dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/bustools/DEBIAN dh_gencontrol -O--buildsystem=cmake install -m0755 -d debian/bustools/DEBIAN echo misc:Depends= >> debian/bustools.substvars echo misc:Pre-Depends= >> debian/bustools.substvars install -m0755 -d debian/.debhelper/bustools/dbgsym-root/DEBIAN dpkg-gencontrol -pbustools -ldebian/changelog -Tdebian/bustools.substvars -Pdebian/.debhelper/bustools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=bustools-dbgsym "-DDepends=bustools (= \${binary:Version})" "-DDescription=debug symbols for bustools" -DBuild-Ids=0989f6e3673177d1bb4045c34973e246247711bd -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/bustools/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbustools -ldebian/changelog -Tdebian/bustools.substvars -Pdebian/bustools chmod 0644 -- debian/bustools/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/bustools/DEBIAN cd debian/bustools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/bustools/DEBIAN/md5sums install -m0755 -d debian/.debhelper/bustools/dbgsym-root/DEBIAN cd debian/.debhelper/bustools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/bustools/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/.debhelper/bustools/dbgsym-root .. dpkg-deb --root-owner-group --build debian/bustools .. dpkg-deb: building package 'bustools-dbgsym' in '../bustools-dbgsym_0.42.0+dfsg-1_amd64.deb'. dpkg-deb: building package 'bustools' in '../bustools_0.42.0+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../bustools_0.42.0+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../bustools_0.42.0+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/245433 and its subdirectories I: Current time: Mon May 27 05:40:51 -12 2024 I: pbuilder-time-stamp: 1716831651 Tue Apr 25 11:17:52 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Apr 25 11:17:52 UTC 2023 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Apr 25 11:24:32 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Apr 25 11:24:32 UTC 2023 I: bustools_0.42.0+dfsg-1_amd64.changes: Format: 1.8 Date: Sat, 31 Dec 2022 11:11:50 +0000 Source: bustools Binary: bustools bustools-dbgsym Architecture: amd64 Version: 0.42.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: bustools - program for manipulating BUS files for single cell RNA-Seq datase Changes: bustools (0.42.0+dfsg-1) unstable; urgency=medium . * Team Upload. * New upstream version 0.42.0+dfsg Checksums-Sha1: bee36043c0e747ba38419983ceb075c23bf743ae 6807796 bustools-dbgsym_0.42.0+dfsg-1_amd64.deb 66131bb8a07f83ef3601fe383c1457aca9607bea 6173 bustools_0.42.0+dfsg-1_amd64.buildinfo 6e53afcf84ab50df7acc4f11267e4bfb16a1acf8 316236 bustools_0.42.0+dfsg-1_amd64.deb Checksums-Sha256: 2d6c67582bc6168c965b1df0c9167d754ac40b15f29e1d34cda05dd977afc5fc 6807796 bustools-dbgsym_0.42.0+dfsg-1_amd64.deb 9c484f8e8a4ce51eb982eb968b2b929593615129cf6b6c088956a74c0591e2c0 6173 bustools_0.42.0+dfsg-1_amd64.buildinfo ca38e886bf85fd94344e11fb3a00a3211eb38447893e28eea0623117ead590e3 316236 bustools_0.42.0+dfsg-1_amd64.deb Files: 9efb553deca1317ab36344b3c688d445 6807796 debug optional bustools-dbgsym_0.42.0+dfsg-1_amd64.deb c219f08eebbd6887915cb6455b78493e 6173 science optional bustools_0.42.0+dfsg-1_amd64.buildinfo e0339ba4d2608c405443d47c0d4e2c66 316236 science optional bustools_0.42.0+dfsg-1_amd64.deb Tue Apr 25 11:24:33 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/bustools_0.42.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/bustools_0.42.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/bustools_0.42.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/b1/bustools_0.42.0+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.yBjlwCFf/b2/bustools_0.42.0+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.436s) 0.436s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.109s) 0.109s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Apr 25 11:24:35 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 25 11:24:35 UTC 2023 I: bustools from bookworm built successfully and reproducibly on amd64. Tue Apr 25 11:24:36 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Apr 25 11:24:36 UTC 2023 I: Submitting 8.0K b1/bustools_0.42.0+dfsg-1_amd64.buildinfo.asc Tue Apr 25 11:24:37 UTC 2023 I: Submitting 8.0K b2/bustools_0.42.0+dfsg-1_amd64.buildinfo.asc Tue Apr 25 11:24:38 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 25 11:24:38 UTC 2023 I: Done submitting .buildinfo files. Tue Apr 25 11:24:38 UTC 2023 I: Removing signed bustools_0.42.0+dfsg-1_amd64.buildinfo.asc files: removed './b1/bustools_0.42.0+dfsg-1_amd64.buildinfo.asc' removed './b2/bustools_0.42.0+dfsg-1_amd64.buildinfo.asc'