Tue Apr 25 11:38:58 UTC 2023 I: starting to build dazzdb/bookworm/amd64 on jenkins on '2023-04-25 11:38' Tue Apr 25 11:38:58 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/11763/console.log Tue Apr 25 11:38:58 UTC 2023 I: Downloading source for bookworm/dazzdb=1.0+git20221215.aad3a46-1 --2023-04-25 11:38:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dazzdb/dazzdb_1.0%2bgit20221215.aad3a46-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2121 (2.1K) [text/prs.lines.tag] Saving to: ‘dazzdb_1.0+git20221215.aad3a46-1.dsc’ 0K .. 100% 56.0M=0s 2023-04-25 11:38:59 (56.0 MB/s) - ‘dazzdb_1.0+git20221215.aad3a46-1.dsc’ saved [2121/2121] Tue Apr 25 11:38:59 UTC 2023 I: dazzdb_1.0+git20221215.aad3a46-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dazzdb Binary: dazzdb Architecture: any Version: 1.0+git20221215.aad3a46-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pranav Ballaney Homepage: https://github.com/thegenemyers/DAZZ_DB Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dazzdb Vcs-Git: https://salsa.debian.org/med-team/dazzdb.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: dazzdb deb science optional arch=any Checksums-Sha1: 5ead599c0a964fd9f28166acb9e1ef334729d3e2 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz f740d1273f027f20bbdab3260cfda3f517cf4dd2 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz Checksums-Sha256: a6efaeb2eb9b5059f046a00c5cbbd2c16311da3ed5d4d0b85145f13b8053458b 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz 75aee758d86394a4bba7c5103d03f250712234dcf04c2d23d67e6d1a909caf17 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz Files: 20da0b5d431c77234ecd679704b0a0c8 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz 5b8d9756090467001b65b6d5ab22e8a3 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgzrQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFKyg/+OgwufXApn7jtYzSjuZPiFmW4Oph3Nwca GIKzDNKt9OXzhuhZ+mGCQG7lIzjh478t87jpkuzssDnZS3WkDsa9paXdN3ktmBGj SEzN0F059UYyVb/M5z7KciGa8mqcPV+0zzO/KQgnB8L7SkRmuODDQJmbYaGOoO4A 7cjHoLziUfSWdtGG3jpy386Av8HE1VtnoMS+SW3hFU3WQVgCWgXzTi9BQAcaed5U LBwYPSeJC1lTZZhsLp4rKceWVRHUvy5izL2Cajbxjn/mMvEymEHt+bsPJBjC3WUv Ui7tIw88l3ZJv4r0ZUOXio+vRR0MS+/og5tyMn2ol2/lIH4XDi2LYJSYkXf14YY8 t7U0lGOekbGEflMD9IQPakj+GLqI3mIl3WJjUfGuTmH1c5a10JHtFM9/adamz1Eo DK2mIR9614e3tXwXaHvegdZLOaHxln3VaR5L6ffxD6jQQxy9vaI3gnNQ4FRB7NFC yaRaorz7Eonj3YJDOrE6z5Efb14pA2XaBXTPjpdmiKhB3Dd2wXME28LEkgyL7p6W vBQP6Yi0oTc5lS9NJaWwg5VZ1UbbM/oFjNltp1rNP5LD76LMTMux5PcN5KUyuD38 kTMupJiQRAQMqUOKKwJeSweXWDwIlwg2MvIWQGakNLlWY1yThebotf1MNh0VzkFw qQsOSqogQxk= =wpKV -----END PGP SIGNATURE----- Tue Apr 25 11:38:59 UTC 2023 I: Checking whether the package is not for us Tue Apr 25 11:38:59 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Apr 25 11:38:59 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Apr 25 11:40:50 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 24 23:39:01 -12 2023 I: pbuilder-time-stamp: 1682422741 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dazzdb_1.0+git20221215.aad3a46-1.dsc] I: copying [./dazzdb_1.0+git20221215.aad3a46.orig.tar.xz] I: copying [./dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 5 21:56:04 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dazzdb_1.0+git20221215.aad3a46-1.dsc: no acceptable signature found dpkg-source: info: extracting dazzdb in dazzdb-1.0+git20221215.aad3a46 dpkg-source: info: unpacking dazzdb_1.0+git20221215.aad3a46.orig.tar.xz dpkg-source: info: unpacking dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying append-cflags.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying use-after-free.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3340378/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2ebda90051e449a0947e2944b5d43332' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3340378' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/pbuilderrc_SlVw --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/b1 --logfile b1/build.log dazzdb_1.0+git20221215.aad3a46-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3340378/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.6 MB of archives. After unpacking 73.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Fetched 19.6 MB in 1s (33.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dazzdb-1.0+git20221215.aad3a46/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dazzdb_1.0+git20221215.aad3a46-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20221215.aad3a46-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' rm -f fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE rm -fr *.dSYM rm -f dazz.db.tar.gz make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DB.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DB cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DB2fasta cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DINTERACTIVE -Wl,-z,relro -Wl,-z,now quiva2DB.c DB.c DB.h QV.c QV.h -lm -lz -o quiva2DB cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2quiva.c DB.c DB.h QV.c QV.h -lm -lz -o DB2quiva cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBsplit.c DB.c DB.h QV.c QV.h -lm -lz -o DBsplit cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBdust.c DB.c DB.h QV.c QV.h -lm -lz -o DBdust cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now Catrack.c DB.c DB.h QV.c QV.h -lm -lz -o Catrack cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBshow.c DB.c DB.h QV.c QV.h -lm -lz -o DBshow cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBstats.c DB.c DB.h QV.c QV.h -lm -lz -o DBstats cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBrm.c DB.c DB.h QV.c QV.h -lm -lz -o DBrm cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DMOVE -Wl,-z,relro -Wl,-z,now DBmv.c DB.c DB.h QV.c QV.h -lm -lz -o DBmv cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -o DBcp DBmv.c DB.c DB.h QV.c QV.h -lm -lz cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta quiva2DB.c: In function 'main': quiva2DB.c:455:9: warning: pointer 'input' may be used after 'fclose' [-Wuse-after-free] 455 | if (fgetc(input) != EOF) | ^~~~~~~~~~~~ quiva2DB.c:350:17: note: call to 'fclose' here 350 | fclose(input); | ^~~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:390:3: note: in expansion of macro 'assert' 390 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:391:3: note: in expansion of macro 'assert' 391 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:943:3: note: in expansion of macro 'assert' 943 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:944:3: note: in expansion of macro 'assert' 944 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1156:3: note: in expansion of macro 'assert' 1156 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1758:3: note: in expansion of macro 'assert' 1758 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'oneAddProvenance': ONElib.c:1792:29: warning: implicit declaration of function 'vasprintf'; did you mean 'vsprintf'? [-Wimplicit-function-declaration] 1792 | va_start (args, format) ; vasprintf (&p.command, format, args) ; va_end (args) ; | ^~~~~~~~~ | vsprintf ONElib.c: In function 'addReference': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1809:3: note: in expansion of macro 'assert' 1809 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1883:3: note: in expansion of macro 'assert' 1883 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1884:3: note: in expansion of macro 'assert' 1884 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'oneWriteLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2027:3: note: in expansion of macro 'assert' 2027 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2028:3: note: in expansion of macro 'assert' 2028 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2031:3: note: in expansion of macro 'assert' 2031 | assert (li) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2038:7: note: in expansion of macro 'assert' 2038 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2486:3: note: in expansion of macro 'assert' 2486 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3488:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3489:9: note: here 3489 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3500:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3500 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3501:9: note: here 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3486:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3486 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3497:5: note: here 3497 | case 4: | ^~~~ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ ONElib.c: In function 'oneFileOpenWriteFrom': ONElib.c:393:33: warning: '%ld' directive writing between 1 and 19 bytes into a region of size between 7 and 25 [-Wformat-overflow=] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~ In function 'oneSchemaCreateDynamic', inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: ONElib.c:393:20: note: directive argument in the range [0, 9223372036854775805] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:906, from ONElib.h:20, from ONElib.c:38: In function 'sprintf', inlined from 'oneSchemaCreateDynamic' at ONElib.c:393:5, inlined from 'oneFileOpenWriteFrom' at ONElib.c:1655:20: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output 11 or more bytes (assuming 47) into a destination of size 32 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_auto_install make -j15 install DESTDIR=/build/dazzdb-1.0\+git20221215.aad3a46/debian/dazzdb AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' install -d /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin install fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin make[2]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' cd /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin && mv simulator dsimulator mkdir -p /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/share/man/man1 for command in /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin/*; \ do \ ln -s dazzdb.1 \ /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20221215.aad3a46-1_amd64.deb'. dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20221215.aad3a46-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20221215.aad3a46-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3340378 and its subdirectories I: Current time: Mon Apr 24 23:40:50 -12 2023 I: pbuilder-time-stamp: 1682422850 Tue Apr 25 11:40:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Tue Apr 25 11:40:51 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Tue Apr 25 11:44:50 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Tue Apr 25 11:44:51 UTC 2023 I: dazzdb_1.0+git20221215.aad3a46-1_amd64.changes: Format: 1.8 Date: Mon, 06 Feb 2023 10:52:26 +0100 Source: dazzdb Binary: dazzdb dazzdb-dbgsym Architecture: amd64 Version: 1.0+git20221215.aad3a46-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dazzdb - manage nucleotide sequencing read data Changes: dazzdb (1.0+git20221215.aad3a46-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: bebdf7014b28fe5e2e988b130e3905819e093ae4 1806288 dazzdb-dbgsym_1.0+git20221215.aad3a46-1_amd64.deb e32a215f6cb7e53d3eca98cefdaa393d8bf63f5c 5256 dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo 9fb58a4f63dbd9ebda2a1722066613751f5c581c 226024 dazzdb_1.0+git20221215.aad3a46-1_amd64.deb Checksums-Sha256: 0893da7a6810905f36b1bede34ad509cd048e5c584b4934b46d90e194ce2bc0b 1806288 dazzdb-dbgsym_1.0+git20221215.aad3a46-1_amd64.deb 923e7397a0a5e1abfac2ca1cb60b2003f7916ab1300132f58db53ca8d151057d 5256 dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo 8d428b2ac8245cc0e44239baecf882a2403c9d303ac0b52aa34bf8ab3e0dc91c 226024 dazzdb_1.0+git20221215.aad3a46-1_amd64.deb Files: 2825c2ad3bb854d205d9d6b88f322281 1806288 debug optional dazzdb-dbgsym_1.0+git20221215.aad3a46-1_amd64.deb f55d87260209bcac9947140dcc411964 5256 science optional dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo 4e669a91664946666b1c126f5882ba2f 226024 science optional dazzdb_1.0+git20221215.aad3a46-1_amd64.deb Tue Apr 25 11:44:52 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/b1/dazzdb_1.0+git20221215.aad3a46-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.rVqg02LY/b2/dazzdb_1.0+git20221215.aad3a46-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.369s) 0.369s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.039s) 0.039s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Apr 25 11:44:53 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 25 11:44:53 UTC 2023 I: dazzdb from bookworm built successfully and reproducibly on amd64. Tue Apr 25 11:44:54 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Apr 25 11:44:54 UTC 2023 I: Submitting 8.0K b1/dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo.asc Tue Apr 25 11:44:55 UTC 2023 I: Submitting 8.0K b2/dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo.asc Tue Apr 25 11:44:56 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 25 11:44:56 UTC 2023 I: Done submitting .buildinfo files. Tue Apr 25 11:44:56 UTC 2023 I: Removing signed dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo.asc files: removed './b1/dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo.asc' removed './b2/dazzdb_1.0+git20221215.aad3a46-1_amd64.buildinfo.asc'