Thu Jun 8 13:07:47 UTC 2023 I: starting to build edtsurf/bookworm/amd64 on jenkins on '2023-06-08 13:07' Thu Jun 8 13:07:47 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_14/524/console.log Thu Jun 8 13:07:47 UTC 2023 I: Downloading source for bookworm/edtsurf=0.2009-10 --2023-06-08 13:07:47-- http://cdn-fastly.deb.debian.org/debian/pool/main/e/edtsurf/edtsurf_0.2009-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘edtsurf_0.2009-10.dsc’ 0K . 100% 134M=0s 2023-06-08 13:07:47 (134 MB/s) - ‘edtsurf_0.2009-10.dsc’ saved [2026/2026] Thu Jun 8 13:07:47 UTC 2023 I: edtsurf_0.2009-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: edtsurf Binary: edtsurf Architecture: any Version: 0.2009-10 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Pranav Ballaney Homepage: https://zhanglab.ccmb.med.umich.edu/EDTSurf/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/edtsurf Vcs-Git: https://salsa.debian.org/med-team/edtsurf.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: edtsurf deb science optional arch=any Checksums-Sha1: f052d417db24a706866dd2f98c069f026c575c7a 38539 edtsurf_0.2009.orig.tar.gz 100acdf1684c739328ce1e8d5b9f08c7f2b4b20e 99696 edtsurf_0.2009-10.debian.tar.xz Checksums-Sha256: 9025455d00d967016fd50635d4bf550d78097ee9160ca33e3e6246b9b21bea7a 38539 edtsurf_0.2009.orig.tar.gz 6dca4d8a84aa7dcac0d5c012f3554625e3623a397bca41b65119cbaa33d9f53c 99696 edtsurf_0.2009-10.debian.tar.xz Files: ed09afbe1a3673aaa8095bfdd69454a2 38539 edtsurf_0.2009.orig.tar.gz 1daf6b5792c18b2a8e895bddc5176969 99696 edtsurf_0.2009-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAS3bEACgkQPCZ2P2xn 5uKfRg/+I/NJPNgrY/HLh2UJL5T2z42WpjpOLSfaTXMtD+uPTNui6q3lhCsEkCBW 8C84B9XsI6UEifgjluIwSvpmVb3fytxv0XsUccwQoHZtF2tHF8SRbsJEA+Pelv6M CLKRECg8SwimgaYYnvw5mCEIyXsyfAvxU5nTbHI3l3UIOkflQ9ARTb8TBPBROTO+ 6pGtxLs+Fikp7LX56gCczx+6bmSFys/UrmSIAOrmmx4Gd6ndOzXE+ndK90W7szaP FoikNRrxI7ur7YFl0FUObfu6lYiWe7bNqNKvajImqWYxoKnSM7H3KWt5CV4AboNu Y01LqNVO1tfzGwTaUfM4fzlLCKWeAdbcNTlDg9HYzjb/8KywUIgl4jKTbC/Oa4YH noS9Q1X1Z1ekyhwdWCgYrp+DgXZ9mY9srK0cpSPvW0Cf88otomk68hPptpZoTqSz xLGS7Cbc92NorTMbt62KWicJvFFkozXv/M03gbPmBrY8UYidm7HAxLPXhrNyTiJC HrMxzSFggcXqcAUMSDG2GevrtmqB8b1K4jbmBFLKPkUXEgQzN+aEMAKY3XZOe34n YEi/g5w9E5lStMgaVDZaZyxrZifsC6FWRrxvdHLLIiadRL5c8CjjIy9myzEN9dVr sCCxKXo5LiCSPcf8YxXlkh5I1MUSUctjWwLy4yPsi0akVucn5gs= =MEzt -----END PGP SIGNATURE----- Thu Jun 8 13:07:47 UTC 2023 I: Checking whether the package is not for us Thu Jun 8 13:07:47 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Jun 8 13:07:47 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Jun 8 13:10:57 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 10 07:31:08 -12 2024 I: pbuilder-time-stamp: 1720639868 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [edtsurf_0.2009-10.dsc] I: copying [./edtsurf_0.2009.orig.tar.gz] I: copying [./edtsurf_0.2009-10.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 28 03:52:17 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./edtsurf_0.2009-10.dsc: no acceptable signature found dpkg-source: info: extracting edtsurf in edtsurf-0.2009 dpkg-source: info: unpacking edtsurf_0.2009.orig.tar.gz dpkg-source: info: unpacking edtsurf_0.2009-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying CFLAGS_missing_in_Makefile.patch dpkg-source: info: applying fix-use-of-unsigned-char.patch dpkg-source: info: applying fix_return_values.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1231756/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0f0af36cd9eb45e6b8c8fdc9cd7ad902' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1231756' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/pbuilderrc_mbit --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/b1 --logfile b1/build.log edtsurf_0.2009-10.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.7-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.20-2~bpo11+1 (2023-04-23) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1231756/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Fetched 18.7 MB in 1s (16.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/edtsurf-0.2009/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../edtsurf_0.2009-10_source.changes dpkg-buildpackage: info: source package edtsurf dpkg-buildpackage: info: source version 0.2009-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/build/edtsurf-0.2009' dh_clean rm -f EDTSurf make[1]: Leaving directory '/build/edtsurf-0.2009' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/edtsurf-0.2009' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/edtsurf-0.2009=. -fstack-protector-strong -Wformat -Werror=format-security -c ParsePDB.cpp -o ParsePDB.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/edtsurf-0.2009=. -fstack-protector-strong -Wformat -Werror=format-security -c ProteinSurface.cpp -o ProteinSurface.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/edtsurf-0.2009=. -fstack-protector-strong -Wformat -Werror=format-security -c EDTSurf.cpp -o EDTSurf.o ParsePDB.cpp: In member function 'bool ParsePDB::loadpdb(char*)': ParsePDB.cpp:1462:22: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1462 | fgets(oneline,255,filein); | ~~~~~^~~~~~~~~~~~~~~~~~~~ ParsePDB.cpp: In member function 'void ParsePDB::splitpdb()': ParsePDB.cpp:1524:55: warning: '%d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 1524 | sprintf(tmpn,"%d",i); | ^~ ParsePDB.cpp:1524:54: note: directive argument in the range [10, 2147483647] 1524 | sprintf(tmpn,"%d",i); | ^~~~ In file included from /usr/include/stdio.h:906, from CommonPara.h:10, from ParsePDB.cpp:12: In function 'int sprintf(char*, const char*, ...)', inlined from 'void ParsePDB::splitpdb()' at ParsePDB.cpp:1524:13: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -Wl,-z,relro -Wl,-z,now ParsePDB.o ProteinSurface.o EDTSurf.o -o EDTSurf rm *.o make[1]: Leaving directory '/build/edtsurf-0.2009' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/edtsurf/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'edtsurf' in '../edtsurf_0.2009-10_amd64.deb'. dpkg-deb: building package 'edtsurf-dbgsym' in '../edtsurf-dbgsym_0.2009-10_amd64.deb'. dpkg-genbuildinfo --build=binary -O../edtsurf_0.2009-10_amd64.buildinfo dpkg-genchanges --build=binary -O../edtsurf_0.2009-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1231756 and its subdirectories I: Current time: Wed Jul 10 07:34:14 -12 2024 I: pbuilder-time-stamp: 1720640054 Thu Jun 8 13:10:57 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Jun 8 13:10:57 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Jun 8 13:13:19 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Jun 8 13:13:19 UTC 2023 I: edtsurf_0.2009-10_amd64.changes: Format: 1.8 Date: Thu, 28 Jan 2021 16:50:25 +0100 Source: edtsurf Binary: edtsurf edtsurf-dbgsym Architecture: amd64 Version: 0.2009-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: edtsurf - triangulated mesh surfaces for protein structures Closes: 980441 Changes: edtsurf (0.2009-10) unstable; urgency=medium . * Team upload. * debian/rules: for i386 compile with -ffloat-store. Closes: #980441 * debian/test/run-unit-test: run all tests on i386 * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 46a4a6640f35f4d1da7c38e695f63170a31ad07b 101568 edtsurf-dbgsym_0.2009-10_amd64.deb 2025ebf291049aa7d4748dded70b003a9a34591d 5118 edtsurf_0.2009-10_amd64.buildinfo b7c6523ff89e2a11ed2f8d3bd9ff74c1ae21e76c 156392 edtsurf_0.2009-10_amd64.deb Checksums-Sha256: f6d504a5fab128f7354943f69f5a78c14f506912e2d5b75c823d02cf6f841be5 101568 edtsurf-dbgsym_0.2009-10_amd64.deb 4e607f660e00839bf85897fff7373be21508df323482d37f8db16f806fe39e63 5118 edtsurf_0.2009-10_amd64.buildinfo 734e77551f2774121032084ae72f5bf66b4f7fd14b4711036abd571a0a67c7b1 156392 edtsurf_0.2009-10_amd64.deb Files: 5b86d875bfb7fd0ac7d1146b15893371 101568 debug optional edtsurf-dbgsym_0.2009-10_amd64.deb 2467b40a407f048e6192c0c08cc8994b 5118 science optional edtsurf_0.2009-10_amd64.buildinfo 3a5a7c44fc0474f083eb118a28693bae 156392 science optional edtsurf_0.2009-10_amd64.deb Thu Jun 8 13:13:20 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/edtsurf_0.2009-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/edtsurf_0.2009-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/edtsurf_0.2009-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/b1/edtsurf_0.2009-10_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.0rMDV2Vr/b2/edtsurf_0.2009-10_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.310s) 0.310s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Jun 8 13:13:22 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 8 13:13:22 UTC 2023 I: edtsurf from bookworm built successfully and reproducibly on amd64. Thu Jun 8 13:13:23 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Jun 8 13:13:23 UTC 2023 I: Submitting 8.0K b1/edtsurf_0.2009-10_amd64.buildinfo.asc Thu Jun 8 13:13:25 UTC 2023 I: Submitting 8.0K b2/edtsurf_0.2009-10_amd64.buildinfo.asc Thu Jun 8 13:13:27 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 8 13:13:27 UTC 2023 I: Done submitting .buildinfo files. Thu Jun 8 13:13:27 UTC 2023 I: Removing signed edtsurf_0.2009-10_amd64.buildinfo.asc files: removed './b1/edtsurf_0.2009-10_amd64.buildinfo.asc' removed './b2/edtsurf_0.2009-10_amd64.buildinfo.asc'