Wed Jan 10 07:33:44 UTC 2024 I: starting to build hmmer/bookworm/amd64 on jenkins on '2024-01-10 07:33' Wed Jan 10 07:33:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_21/11861/console.log Wed Jan 10 07:33:44 UTC 2024 I: Downloading source for bookworm/hmmer=3.3.2+dfsg-1 --2024-01-10 07:33:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/hmmer/hmmer_3.3.2%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2128 (2.1K) [text/prs.lines.tag] Saving to: ‘hmmer_3.3.2+dfsg-1.dsc’ 0K .. 100% 271M=0s 2024-01-10 07:33:44 (271 MB/s) - ‘hmmer_3.3.2+dfsg-1.dsc’ saved [2128/2128] Wed Jan 10 07:33:44 UTC 2024 I: hmmer_3.3.2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hmmer Binary: hmmer, hmmer-doc, hmmer-examples Architecture: any-amd64 any-i386 powerpc ppc64 all Version: 3.3.2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://hmmer.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/hmmer Vcs-Git: https://salsa.debian.org/med-team/hmmer.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 Package-List: hmmer deb science optional arch=any-amd64,any-i386,powerpc,ppc64,x32 hmmer-doc deb doc optional arch=all hmmer-examples deb doc optional arch=all Checksums-Sha1: 9b796c84b7348c8520ba38c1c266becbf36a7520 12390556 hmmer_3.3.2+dfsg.orig.tar.xz 939de19e51fc3389d4ef003fe76ea52ba2329b97 14264 hmmer_3.3.2+dfsg-1.debian.tar.xz Checksums-Sha256: 32913d564890c0eac5a95af9cc0a4284e612138be4754212db316fff1d379803 12390556 hmmer_3.3.2+dfsg.orig.tar.xz 8d750af4414f6603cfa21387ae465057acf6990ded6f94da262cdc737c321d43 14264 hmmer_3.3.2+dfsg-1.debian.tar.xz Files: e04965f449d014e0f1ec30eb8e93680c 12390556 hmmer_3.3.2+dfsg.orig.tar.xz d2e5478082fd51a374751d254a9b3fbc 14264 hmmer_3.3.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl/trQUACgkQPCZ2P2xn 5uI4TRAAzD/nOH3fXRpAQj2p5hjrjJgKAueoVFpPoq852susxJ1Q+Pxt/XWRldyz BGC/pD3j02nbhLulk5+g/1jHpQEhWc7+tpeiwOEkyEl12sJxeFDnlTHb+3AMr9sL YzdxqrhaB+sSNd/XGmY7ZxYzz9HVQ1OW/6QHpLUK/5wXEAoL9oezSsLHVAMck0GQ s2+nSkHIricQRTrCoEFvViZPHDU1iP2mdeSz2l1t5uTHJLfHiN0qCp8MTJfa4ZaH ayONbN5MH/yeBHvhYSroJ3qT7CKYzfg/P56RK529VYmH1BASk2AoYHMX4wiuM6t9 7MxzUkJGjOxQ2C5x6QqPFakqucbHzvFYU9DAKjQALXS3thhd2yTeO77da6fpAlZP 4VSx+cz2zik7m11yslL4CCcOAsxHjBNMIxWGXncQgTUdiOcT+02Z/pLsWw6KMMWF Pz5TsMW3tJfp3QF+76nKY9qB57r8dajSn+cGTRPpPWnjbEAVUTxIsZtIcCwQPBHt SaEKr8GX1ve0GkmZPGB+89kXNRrFV3nxY5fXYTbWcEdbhdvrEWtb0+XufDhQTHrr +4Pm/7eTC2mhkXNpEVZ17ndAvVeiArwfFmVqQ5bXTetztCrdYxBcEJE4+0HLDWnx cXLXr/tJkcr93BDh6Zx1pMtdBmnR4y2oyK1GbUGu1P6hlAizSxE= =zakN -----END PGP SIGNATURE----- Wed Jan 10 07:33:44 UTC 2024 I: Checking whether the package is not for us Wed Jan 10 07:33:44 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Jan 10 07:33:44 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Jan 10 07:44:57 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 9 19:33:48 -12 2024 I: pbuilder-time-stamp: 1704872028 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hmmer_3.3.2+dfsg-1.dsc] I: copying [./hmmer_3.3.2+dfsg.orig.tar.xz] I: copying [./hmmer_3.3.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 31 10:50:45 2020 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./hmmer_3.3.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting hmmer in hmmer-3.3.2+dfsg dpkg-source: info: unpacking hmmer_3.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer_3.3.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_manpage_extension.patch dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying verbose-easel dpkg-source: info: applying hardening dpkg-source: info: applying skip_threads_check dpkg-source: info: applying sub_make_parallel dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2800600/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f8e1f5c2b78a457da64e7ee7f223e86c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2800600' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/pbuilderrc_FUQr --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/b1 --logfile b1/build.log hmmer_3.3.2+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 23 2023 more -rwsr-xr-x 1 root root 59704 Mar 23 2023 mount -rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 23 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/2800600/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 43 newly installed, 0 to remove and 0 not upgraded. Need to get 24.5 MB of archives. After unpacking 95.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort3 amd64 2.0.1-5 [44.7 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libdivsufsort-dev amd64 2.0.1-5 [19.1 kB] Fetched 24.5 MB in 1s (17.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18464 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... 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Unpacking libdivsufsort-dev:amd64 (2.0.1-5) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libdivsufsort3:amd64 (2.0.1-5) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up libdivsufsort-dev:amd64 (2.0.1-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/hmmer-3.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hmmer_3.3.2+dfsg-1_source.changes dpkg-buildpackage: info: source package hmmer dpkg-buildpackage: info: source version 3.3.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from hmmer-3.3.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? rm -f config.log config.status configure find . -name Makefile -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' AUTOHEADER=true dh_autoreconf configure.ac:230: warning: The macro `AC_PROG_CC_STDC' is obsolete. configure.ac:230: You should run autoupdate. ./lib/autoconf/c.m4:1666: AC_PROG_CC_STDC is expanded from... configure.ac:230: the top level configure.ac:264: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... easel/m4/ax_pthread.m4:88: AX_PTHREAD is expanded from... configure.ac:264: the top level make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: Configuring HMMER3 for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for strip... strip checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for python3... yes checking for library containing clock_gettime... none required checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking for netinet/in.h... yes checking for sys/param.h... yes checking for sys/sysctl.h... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... no checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for library containing ntohs... none required checking for library containing ntohl... none required checking for library containing htons... none required checking for library containing htonl... none required checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating documentation/userguide/inclusions/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/titlepage_daemon.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/alimask.man config.status: creating documentation/man/hmmalign.man config.status: creating documentation/man/hmmbuild.man config.status: creating documentation/man/hmmc2.man config.status: creating documentation/man/hmmconvert.man config.status: creating documentation/man/hmmemit.man config.status: creating documentation/man/hmmer.man config.status: creating documentation/man/hmmfetch.man config.status: creating documentation/man/hmmlogo.man config.status: creating documentation/man/hmmpgmd.man config.status: creating documentation/man/hmmpgmd_shard.man config.status: creating documentation/man/hmmpress.man config.status: creating documentation/man/hmmscan.man config.status: creating documentation/man/hmmsearch.man config.status: creating documentation/man/hmmsim.man config.status: creating documentation/man/hmmstat.man config.status: creating documentation/man/jackhmmer.man config.status: creating documentation/man/makehmmerdb.man config.status: creating documentation/man/nhmmer.man config.status: creating documentation/man/nhmmscan.man config.status: creating documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: linking src/impl_sse to src/impl HMMER configuration: compiler: gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread host: x86_64-pc-linux-gnu linker: -Wl,-z,relro -Wl,-z,now -flto libraries: DP implementation: sse Now do 'make' to build HMMER, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages, '(cd easel; make install)' to install Easel tools. make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' export V=VERBOSE ; dh_auto_build make -j15 make[2]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' make -C easel all make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_vectorops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_json.o esl_keyhash.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lm gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_filter.c lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lm lto-wrapper: warning: using serial compilation of 6 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' make -C src all make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o build.o -c build.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o io.o -c io.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 7 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 10 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 12 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 9 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' make -C profmark all make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/profmark' gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../easel -I../easel -I../src -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -flto -L../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/profmark' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' export V=VERBOSE ; make check -j15 | tee debian/test_log make[2]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' make -C easel tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alloc_utest -I. -I. -L. -DeslALLOC_TESTDRIVE ./esl_alloc.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_bitfield_utest -I. -I. -L. -DeslBITFIELD_TESTDRIVE ./esl_bitfield.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_cpu_utest -I. -I. -L. -DeslCPU_TESTDRIVE ./esl_cpu.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_graph_utest -I. -I. -L. -DeslGRAPH_TESTDRIVE ./esl_graph.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_huffman_utest -I. -I. -L. -DeslHUFFMAN_TESTDRIVE ./esl_huffman.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_json_utest -I. -I. -L. -DeslJSON_TESTDRIVE ./esl_json.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_matrixops_utest -I. -I. -L. -DeslMATRIXOPS_TESTDRIVE ./esl_matrixops.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_minimizer_utest -I. -I. -L. -DeslMINIMIZER_TESTDRIVE ./esl_minimizer.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_mixdchlet_utest -I. -I. -L. -DeslMIXDCHLET_TESTDRIVE ./esl_mixdchlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_quicksort_utest -I. -I. -L. -DeslQUICKSORT_TESTDRIVE ./esl_quicksort.c -leasel -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rand64_utest -I. -I. -L. -DeslRAND64_TESTDRIVE ./esl_rand64.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_red_black_utest -I. -I. -L. -DeslRED_BLACK_TESTDRIVE ./esl_red_black.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm lto-wrapper: warning: using serial compilation of 4 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_varint_utest -I. -I. -L. -DeslVARINT_TESTDRIVE ./esl_varint.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx_utest -I. -I. -L. -DeslAVX_TESTDRIVE ./esl_avx.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_avx512_utest -I. -I. -L. -DeslAVX512_TESTDRIVE ./esl_avx512.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_neon_utest -I. -I. -L. -DeslNEON_TESTDRIVE ./esl_neon.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wl,-z,relro -Wl,-z,now -flto -o esl_vmx_utest -I. -I. -L. -DeslVMX_TESTDRIVE ./esl_vmx.c -leasel -lm make -C miniapps tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' make -C src tests make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I. -I. -o itest_brute.o -c itest_brute.c make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7DOMAIN_TESTDRIVE -o p7_domain_utest ./p7_domain.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HIT_TESTDRIVE -o p7_hit_utest ./p7_hit.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATS_TESTDRIVE -o p7_hmmd_search_stats_utest ./p7_hmmd_search_stats.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 3 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../easel -L./impl_sse -L. -I../easel -I../easel -I. -I. -Dp7HMMD_SEARCH_STATUS_TESTDRIVE -o hmmd_search_status_utest ./hmmd_search_status.c -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -L../easel -L./impl_sse -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make -C impl_sse tests make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/hmmer-3.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -flto -O3 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -flto -DHAVE_CONFIG_H -L../../easel -L.. -I../../easel -I../../easel -I. -I.. -I. -I../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm lto-wrapper: warning: using serial compilation of 5 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src/impl_sse' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' make -C easel check make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' make -C miniapps check make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/miniapps' make -C testsuite check make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ json-utest] ... ok. exercise 26 [ keyhash-utest] ... ok. exercise 27 [ matrixops-utest] ... ok. exercise 28 [ mem-utest] ... ok. exercise 29 [ minimizer-utest] ... ok. exercise 30 [ mixdchlet-utest] ... ok. exercise 31 [ msa-utest] ... ok. exercise 32 [ msacluster-utest] ... ok. exercise 33 [ msafile] ... ok. exercise 34 [ msafile2] ... ok. exercise 35 [ msafile-a2m] ... ok. exercise 36 [ msafile-afa] ... ok. exercise 37 [ msafile-clustal] ... ok. exercise 38 [ msafile-phylip] ... ok. exercise 39 [ msafile-psiblast] ... ok. exercise 40 [ msafile-selex] ... ok. exercise 41 [ msafile-stockholm] ... ok. exercise 42 [ msaweight-utest] ... ok. exercise 43 [ neon-utest] ... ok. exercise 44 [ normal-utest] ... ok. exercise 45 [ quicksort-utest] ... ok. exercise 46 [ random-utest] ... ok. exercise 47 [ rand64-utest] ... ok. exercise 48 [ randomseq-utest] ... ok. exercise 49 [ ratematrix-utest] ... ok. exercise 50 [ recorder-utest] ... ok. exercise 51 [ red_black-utest] ... ok. exercise 52 [ regexp-utest] ... ok. exercise 53 [ rootfinder-utest] ... ok. exercise 54 [ scorematrix-utest] ... ok. exercise 55 [ sq-utest] ... ok. exercise 56 [ sqio-utest] ... ok. exercise 57 [ sse-utest] ... ok. exercise 58 [ ssi-utest] ... ok. exercise 59 [ stack-utest] ... ok. exercise 60 [ stats-utest] ... ok. exercise 61 [ stretchexp-utest] ... ok. exercise 62 [ tree-utest] ... ok. exercise 63 [ varint-utest] ... ok. exercise 64 [ vectorops-utest] ... ok. exercise 65 [ vmx-utest] ... ok. exercise 66 [ weibull-utest] ... ok. exercise 67 [ wuss-utest] ... ok. exercise 68 [ e2] ... ok. exercise 69 [ degen-residues] ... ok. exercise 70 [ ncbi-indices] ... ok. exercise 71 [ blank-gf] ... ok. exercise 72 [ esl-translate] ... ok. exercise 73 [ esl-afetch] ... ok. exercise 74 [ esl-alimanip] ... ok. exercise 75 [ esl-alimap] ... ok. exercise 76 [ esl-alimask] ... ok. exercise 77 [ esl-alimerge] ... ok. exercise 78 [ esl-alistat] ... ok. exercise 79 [ esl-compalign] ... ok. exercise 80 [ esl-construct] ... ok. exercise 81 [ esl-mask] ... ok. exercise 82 [ esl-seqrange] ... ok. exercise 83 [ esl-shuffle] ... ok. exercise 84 [ esl-ssdraw] ... ok. All 84 exercises at level <= 2 passed. System information: Wed Jan 10 07:42:14 2024 Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel/testsuite' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' make -C testsuite check make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Wed Jan 10 07:43:11 2024 Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/testsuite' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' if tail -n 6 debian/test_log | head -n 1 | grep -q FAILED ; then false ; fi make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_auto_install make -j15 install DESTDIR=/build/reproducible-path/hmmer-3.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' SUBDIR easel make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' SUBDIR miniapps make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/easel' SUBDIR src make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' SUBDIR impl_sse make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' SUBDIR profmark /usr/bin/install -c -d /build/reproducible-path/hmmer-3.3.2+dfsg/debian/tmp/usr/bin /usr/bin/install -c -d /build/reproducible-path/hmmer-3.3.2+dfsg/debian/tmp/usr/share/man/man1 make -C src install make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan makehmmerdb; do \ /usr/bin/install -c -m 0755 $file /build/reproducible-path/hmmer-3.3.2+dfsg/debian/tmp/usr/bin/ ;\ done make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/src' make -C documentation install make[3]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/documentation' make -C man install make[4]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg/documentation/man' for file in hmmer hmmalign hmmbuild hmmc2 hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpgmd_shard hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0664 $file.man /build/reproducible-path/hmmer-3.3.2+dfsg/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/documentation/man' make[3]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg/documentation' make[2]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' mkdir -p /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ cp src/hmmc2 /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer/usr/lib/x86_64-linux-gnu/hmmer/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_install dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_installexamples mkdir -p /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl find src/ -maxdepth 1 -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/ \; find src/impl_sse -name "*_utest" -exec cp \{\} /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src/impl \; cp src/itest_brute /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp src/hmmpress.itest.pl /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples/src cp -aR testsuite /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find easel -name "*.o" -delete cp -aR easel /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples cp -aR tutorial /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples find /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name 'Makefile' | xargs sed -i "s^/build/reproducible-path/hmmer-3.3.2+dfsg^.^g" find /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "esltmp*" -delete make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_compress -Xtutorial/ make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_fixperms find debian -name .dropbox.attr -delete find debian -name "*.fa" -executable -exec chmod -x \{\} \; find /build/reproducible-path/hmmer-3.3.2+dfsg/debian/hmmer-examples/usr/share/doc/hmmer/examples -name "*.man" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/hmmer-3.3.2+dfsg' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'hmmer' in '../hmmer_3.3.2+dfsg-1_amd64.deb'. dpkg-deb: building package 'hmmer-doc' in '../hmmer-doc_3.3.2+dfsg-1_all.deb'. dpkg-deb: building package 'hmmer-examples' in '../hmmer-examples_3.3.2+dfsg-1_all.deb'. dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.3.2+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../hmmer_3.3.2+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../hmmer_3.3.2+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from hmmer-3.3.2+dfsg/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2800600 and its subdirectories I: Current time: Tue Jan 9 19:44:56 -12 2024 I: pbuilder-time-stamp: 1704872696 Wed Jan 10 07:44:58 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Jan 10 07:44:58 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Jan 10 07:55:31 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Jan 10 07:55:31 UTC 2024 I: hmmer_3.3.2+dfsg-1_amd64.changes: Format: 1.8 Date: Thu, 31 Dec 2020 11:50:25 +0100 Source: hmmer Binary: hmmer hmmer-dbgsym hmmer-doc hmmer-examples Architecture: amd64 all Version: 3.3.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer-examples - profile hidden Markov models for protein sequence analysis (examp Changes: hmmer (3.3.2+dfsg-1) unstable; urgency=medium . * Team upload. * debian/watch: fix version matching * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * debian/control: mark the '-doc' package as Multi-Arch: foreign * Refresh the patches. * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/upstream/metadata: document their GitHub repo Checksums-Sha1: dc7d16580e4572d9c5e440c07f419c8250ea5c25 13513984 hmmer-dbgsym_3.3.2+dfsg-1_amd64.deb 2956a95a4b7b63c45a17b6a79c633991ccc65a7c 768168 hmmer-doc_3.3.2+dfsg-1_all.deb a219b3589e9c9a723af7b98706d3510dc2279bea 32934200 hmmer-examples_3.3.2+dfsg-1_all.deb b5f5ef85f3b148c52fdee73612f3db62193fa167 6226 hmmer_3.3.2+dfsg-1_amd64.buildinfo ddaf8f214d046a41b6773993e043f95a1dbe89fb 1207788 hmmer_3.3.2+dfsg-1_amd64.deb Checksums-Sha256: 5a4ae2d4d93a4409cdcf095b5cd904d836085a6cf7b004c250e4cc6e6ee6edba 13513984 hmmer-dbgsym_3.3.2+dfsg-1_amd64.deb 6c91adaf0ce1839bc458f04c8354d0b4df3d726f12454b8d13c2fb81ffb1e9d0 768168 hmmer-doc_3.3.2+dfsg-1_all.deb fcaff86e67e663b6eb96bafc591a07d9d162e417a24edf0dba349ffd281825a2 32934200 hmmer-examples_3.3.2+dfsg-1_all.deb c4612d0b09c063ddb703ca0d335e9f0f446f8317568ec45a004ec052dc7bc142 6226 hmmer_3.3.2+dfsg-1_amd64.buildinfo 55f39bf6ccdf8e89a37a7919b0a8a9927490e244b426d6eea042bb209e05e79e 1207788 hmmer_3.3.2+dfsg-1_amd64.deb Files: cf7049035a69375f0a0ef8c8344b0e2f 13513984 debug optional hmmer-dbgsym_3.3.2+dfsg-1_amd64.deb e384f1880f38c9ae826f06ba59af91cf 768168 doc optional hmmer-doc_3.3.2+dfsg-1_all.deb e416b93871a6998c5ec386fc1258792f 32934200 doc optional hmmer-examples_3.3.2+dfsg-1_all.deb d32142a6704290464f212b6399899b2a 6226 science optional hmmer_3.3.2+dfsg-1_amd64.buildinfo c0db3247ba060850dfec08c805447c45 1207788 science optional hmmer_3.3.2+dfsg-1_amd64.deb Wed Jan 10 07:55:32 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/hmmer_3.3.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/hmmer_3.3.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/hmmer_3.3.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/b1/hmmer_3.3.2+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Z16hozax/b2/hmmer_3.3.2+dfsg-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## command (total time: 19.913s) 10.855s 3123 calls diff 4.804s 31734 calls readelf 2.967s 6 calls xz 0.759s 902 calls strings 0.126s 11 calls nm 0.102s 2 calls gzip 0.096s 30 calls cmp 0.096s 1804 calls objdump 0.096s 30 calls cmp (external) 0.006s 86 calls cmp (internal) 0.004s 164 calls objcopy ## compare_files (cumulative) (total time: 272.830s) 39.513s 1 call abc.DotChangesFile 39.437s 1 call abc.DebFile 39.240s 2 calls abc.XzFile 36.185s 1 call abc.DebDataTarFile 34.956s 1 call abc.GzipFile 34.842s 1 call abc.ArFile 34.154s 82 calls abc.ElfFile 7.608s 738 calls diffoscope.comparators.elf.ElfSection 4.225s 82 calls diffoscope.comparators.elf.ElfCodeSection 2.591s 246 calls diffoscope.comparators.elf.ElfStringSection 0.056s 1 call abc.TarFile 0.023s 1 call abc.Md5sumsFile ## container_extract (total time: 3.728s) 2.967s 6 calls diffoscope.comparators.xz.XzContainer 0.442s 1476 calls diffoscope.comparators.deb.DebTarContainer 0.166s 8 calls diffoscope.comparators.deb.DebContainer 0.103s 2 calls diffoscope.comparators.gzip.GzipContainer 0.045s 164 calls diffoscope.comparators.ar.ArContainer 0.005s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 14.944s) 14.944s 8091 calls linediff ## has_same_content_as (total time: 0.115s) 0.059s 82 calls abc.ElfFile 0.028s 4 calls abc.DebFile 0.021s 1 call abc.DebDataTarFile 0.004s 738 calls diffoscope.comparators.elf.ElfSection 0.001s 246 calls diffoscope.comparators.elf.ElfStringSection 0.000s 82 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.TarFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.GzipFile 0.000s 1 call abc.ArFile ## main (total time: 147.887s) 147.883s 2 calls outputs 0.004s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.ar.ArContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## output (total time: 107.466s) 107.422s 1 call html 0.023s 1 call text 0.022s 1 call json ## recognizes (total time: 2.081s) 0.823s 16236 calls diffoscope.comparators.elf.ElfSection 0.602s 12 calls diffoscope.comparators.binary.FilesystemFile 0.270s 5412 calls diffoscope.comparators.elf.ElfStringSection 0.215s 5498 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.098s 1804 calls diffoscope.comparators.elf.ElfCodeSection 0.037s 372 calls diffoscope.comparators.utils.archive.ArchiveMember 0.036s 216 calls diffoscope.comparators.debian.DebControlMember 0.000s 10 calls abc.DotChangesFile 0.000s 16 calls abc.Md5sumsFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 1.668s) 1.668s 1164 calls specialize Wed Jan 10 07:58:00 UTC 2024 E: hmmer failed to build reproducibly in bookworm on amd64. Wed Jan 10 07:58:01 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/amd64/hmmer_3.3.2+dfsg-1.diffoscope.html Wed Jan 10 07:58:04 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jan 10 07:58:04 UTC 2024 I: Submitting 8.0K b1/hmmer_3.3.2+dfsg-1_amd64.buildinfo.asc Wed Jan 10 07:58:05 UTC 2024 I: Submitting 8.0K b2/hmmer_3.3.2+dfsg-1_amd64.buildinfo.asc Wed Jan 10 07:58:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 10 07:58:06 UTC 2024 I: Done submitting .buildinfo files. Wed Jan 10 07:58:06 UTC 2024 I: Removing signed hmmer_3.3.2+dfsg-1_amd64.buildinfo.asc files: removed './b1/hmmer_3.3.2+dfsg-1_amd64.buildinfo.asc' removed './b2/hmmer_3.3.2+dfsg-1_amd64.buildinfo.asc'