Fri Jun 2 06:28:37 UTC 2023 I: starting to build libghemical/bookworm/amd64 on jenkins on '2023-06-02 06:28' Fri Jun 2 06:28:37 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/60/console.log Fri Jun 2 06:28:37 UTC 2023 I: Downloading source for bookworm/libghemical=3.0.0-4.3 --2023-06-02 06:28:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/libg/libghemical/libghemical_3.0.0-4.3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2290 (2.2K) [text/prs.lines.tag] Saving to: ‘libghemical_3.0.0-4.3.dsc’ 0K .. 100% 17.4M=0s 2023-06-02 06:28:38 (17.4 MB/s) - ‘libghemical_3.0.0-4.3.dsc’ saved [2290/2290] Fri Jun 2 06:28:38 UTC 2023 I: libghemical_3.0.0-4.3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libghemical Binary: libghemical-dev, libghemical5v5, libghemical-data Architecture: any all Version: 3.0.0-4.3 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: http://bioinformatics.org/ghemical/ghemical/ Standards-Version: 4.5.0 Vcs-Browser: https:https://salsa.debian.org/debichem-team/libghemical Vcs-Git: https://salsa.debian.org:/debichem-team/libghemical.git Build-Depends: debhelper-compat (= 12), gfortran | fortran-compiler, flex, intltool (>= 0.40.0), pkg-config (>= 0.9.0), libblas-dev, liblapack-dev, libmopac7-dev (>= 1.14), libsc-dev (>= 2.3.1-2), mesa-common-dev, libglib2.0-dev Package-List: libghemical-data deb science optional arch=all libghemical-dev deb libdevel optional arch=any libghemical5v5 deb libs optional arch=any Checksums-Sha1: 330fd33968182ba383d0309e72a36f3c8bd02904 787947 libghemical_3.0.0.orig.tar.gz 54e2aba86bbbf3f132e97c1ee443166de66fc2b1 5248 libghemical_3.0.0-4.3.debian.tar.xz Checksums-Sha256: db8c3add0aa1f94c21016d60fa3f66fb194e56b8e9fceaa3860c603700efc3ac 787947 libghemical_3.0.0.orig.tar.gz 5164a94b9e336f68dd72af80608896dd9c7d80967adef0d3c9d2fbd848e0db60 5248 libghemical_3.0.0-4.3.debian.tar.xz Files: 1d5c9c19bb119470d2bb41a7e681eafd 787947 libghemical_3.0.0.orig.tar.gz c255917388fd13ea6fd0da58a0f779ea 5248 libghemical_3.0.0-4.3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAl7XlBYACgkQy+a7Tl2a 06W4/BAAgWhr9iEi+Usm+AfTSWQf1ufP8Z/6nlWxvv7LXdbt/CcBx3IrKadoYSqD jgpTIcZxQxgXLaTfPG+8zboEnVu+Qb0UqYXoJCyon60aIiakunTZeF6PZMeF++yO /F4/bWxiPPb/oApXPzXBI2DGG0e6Sthn6EEIqxQSdWJXjOEzRBSsSoTeA8cLgNYG 0TdxzxwNWAzYcPdLr1CXfHq9Lm2UuyswxV05xYDaBklLkPjfemL4hyoWAWFGpt43 eMYYAuM8vltrlpOpHN1iH9j8lMn1tDXYG6+cGnpVAFZ22Pt4rThlc/KJJuTvAQCh 7HBgTH9+rqIDVGpeNaOvCpKr+NspiMqosvxgoSR9DC5PHidmHe5js1JEUSu8x58j d47eTtLDVtoNiKNLcEoRyf7LdzSRWzyh/8Lyt7eGFwfPCwqtWFB2WQ29EULYIeYq gPpG7mRrgmM3AY9z7nYsG2urvvRsjJvOoHonxdG/wXdM+pV/rfRlQNChBVdKEf0a GoRV8IgS95N2Z38pH31+QwonvGi2iqnwr0M0ddwzaDxl+VK/kQDJDRIdVIzAOT2R Lk4t9NSuNC5rdTHAs7ugBNXu4pojxShVAJylkWtGYtlmcT+cUaNQvt46SUa/8fhO k67uA5Sjkp27G0Iq1UM0p/ckRxM4Lg9XLLrrcgChmHZRVnBSVpk= =4O5V -----END PGP SIGNATURE----- Fri Jun 2 06:28:38 UTC 2023 I: Checking whether the package is not for us Fri Jun 2 06:28:38 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Jun 2 06:28:38 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Jun 2 06:38:19 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 1 18:28:40 -12 2023 I: pbuilder-time-stamp: 1685687320 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libghemical_3.0.0-4.3.dsc] I: copying [./libghemical_3.0.0.orig.tar.gz] I: copying [./libghemical_3.0.0-4.3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 3 00:14:14 2020 -12 gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libghemical_3.0.0-4.3.dsc: no acceptable signature found dpkg-source: info: extracting libghemical in libghemical-3.0.0 dpkg-source: info: unpacking libghemical_3.0.0.orig.tar.gz dpkg-source: info: unpacking libghemical_3.0.0-4.3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-underlinking.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2731780/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='55dbc977e03447289dc123130ca370ea' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2731780' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/pbuilderrc_wv9t --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/b1 --logfile b1/build.log libghemical_3.0.0-4.3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2731780/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), gfortran | fortran-compiler, flex, intltool (>= 0.40.0), pkg-config (>= 0.9.0), libblas-dev, liblapack-dev, libmopac7-dev (>= 1.14), libsc-dev (>= 2.3.1-2), mesa-common-dev, libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19591 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran | fortran-compiler; however: Package gfortran is not installed. Package fortran-compiler is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on intltool (>= 0.40.0); however: Package intltool is not installed. pbuilder-satisfydepends-dummy depends on pkg-config (>= 0.9.0); however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmopac7-dev (>= 1.14); however: Package libmopac7-dev is not installed. pbuilder-satisfydepends-dummy depends on libsc-dev (>= 2.3.1-2); however: Package libsc-dev is not installed. pbuilder-satisfydepends-dummy depends on mesa-common-dev; however: Package mesa-common-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbsd0{a} libcbor0.8{a} libclone-perl{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libffi-dev{a} libfido2-1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libint1{a} libio-html-perl{a} libio-socket-ssl-perl{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack-dev{a} liblapack3{a} libllvm15{a} libltdl-dev{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmopac7-1gf{a} libmopac7-dev{a} libmount-dev{a} libmunge2{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess-dev{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libpsm-infinipath1{a} libpsm2-2{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librdmacm1{a} libreadline8{a} libregexp-ipv6-perl{a} libsc-data{a} libsc-dev{a} libsc7v5{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsub-override-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libucx0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml-parser-perl{a} libxml2{a} libxnvctrl0{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-common-dev{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} perl-openssl-defaults{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libdata-dump-perl libfl-dev libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmail-sendmail-perl libmailtools-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 196 newly installed, 0 to remove and 0 not upgraded. Need to get 124 MB of archives. After unpacking 521 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 flex amd64 2.6.4-8.2 [422 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 13 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 netbase all 6.4 [12.8 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2 [988 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libnl-3-200 amd64 3.7.0-0.2+b1 [63.1 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-200 amd64 3.7.0-0.2+b1 [185 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libibverbs1 amd64 44.0-2 [60.7 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 ibverbs-providers amd64 44.0-2 [335 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libhtml-parser-perl amd64 3.81-1 [101 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libwww-perl all 6.68-1 [186 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libxml-parser-perl amd64 2.46-4 [201 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 intltool all 0.51.0-6 [50.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libblas-dev amd64 3.11.0-2 [158 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 uuid-dev amd64 2.38.1-5+b1 [39.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libblkid-dev amd64 2.38.1-5+b1 [179 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libdrm-common all 2.4.114-1 [7112 B] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libdrm2 amd64 2.4.114-1+b1 [37.5 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libdrm-amdgpu1 amd64 2.4.114-1+b1 [20.9 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libpciaccess0 amd64 0.17-2 [51.4 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libdrm-intel1 amd64 2.4.114-1+b1 [64.0 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libdrm-radeon1 amd64 2.4.114-1+b1 [21.8 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libdrm-nouveau2 amd64 2.4.114-1+b1 [19.1 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libpciaccess-dev amd64 0.17-2 [54.8 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libdrm-dev amd64 2.4.114-1+b1 [287 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libevent-2.1-7 amd64 2.1.12-stable-8 [180 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-8 [131 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-8 [107 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-8 [53.6 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-8 [60.6 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libevent-dev amd64 2.1.12-stable-8 [305 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.2 [168 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 libpsm2-2 amd64 11.2.185-2 [180 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 librdmacm1 amd64 44.0-2 [68.6 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libfabric1 amd64 1.17.0-3 [627 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libffi-dev amd64 3.4.4-1 [59.4 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libglvnd0 amd64 1.6.0-1 [51.8 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2 [292 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2 [759 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libglapi-mesa amd64 22.3.6-1+deb12u1 [35.7 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libx11-xcb1 amd64 2:1.8.4-2 [192 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 128 http://deb.debian.org/debian bookworm/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 libz3-4 amd64 4.8.12-3.1 [7216 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 libllvm15 amd64 1:15.0.6-4+b1 [23.1 MB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 libsensors5 amd64 1:3.6.0-7.1 [34.2 kB] Get: 133 http://deb.debian.org/debian bookworm/main amd64 libgl1-mesa-dri amd64 22.3.6-1+deb12u1 [7239 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 libglx-mesa0 amd64 22.3.6-1+deb12u1 [147 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 libglx0 amd64 1.6.0-1 [34.4 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 libgl1 amd64 1.6.0-1 [88.4 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 138 http://deb.debian.org/debian bookworm/main amd64 x11proto-dev all 2022.1-1 [599 kB] Get: 139 http://deb.debian.org/debian bookworm/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 143 http://deb.debian.org/debian bookworm/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 libx11-dev amd64 2:1.8.4-2 [836 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 libglx-dev amd64 1.6.0-1 [15.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 libgl-dev amd64 1.6.0-1 [100 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-data all 2.74.6-2 [1207 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-bin amd64 2.74.6-2 [110 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev-bin amd64 2.74.6-2 [151 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 libsepol-dev amd64 3.4-2.1 [351 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 libpcre2-16-0 amd64 10.42-1 [245 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 libpcre2-32-0 amd64 10.42-1 [234 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 libpcre2-posix3 amd64 10.42-1 [55.4 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 libpcre2-dev amd64 10.42-1 [753 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 libselinux1-dev amd64 3.4-1+b5 [157 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 libmount-dev amd64 2.38.1-5+b1 [22.5 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-dev amd64 2.74.6-2 [1601 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 libhwloc15 amd64 2.9.0-1 [154 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 libnuma-dev amd64 2.0.16-1 [35.0 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 libltdl-dev amd64 2.4.7-5 [164 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 libhwloc-dev amd64 2.9.0-1 [241 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 libxnvctrl0 amd64 525.85.05-1 [13.3 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 ocl-icd-libopencl1 amd64 2.3.1-1 [43.0 kB] Get: 173 http://deb.debian.org/debian bookworm/main amd64 libhwloc-plugins amd64 2.9.0-1 [17.5 kB] Get: 174 http://deb.debian.org/debian bookworm/main amd64 libnl-3-dev amd64 3.7.0-0.2+b1 [104 kB] Get: 175 http://deb.debian.org/debian bookworm/main amd64 libnl-route-3-dev amd64 3.7.0-0.2+b1 [203 kB] Get: 176 http://deb.debian.org/debian bookworm/main amd64 libibverbs-dev amd64 44.0-2 [633 kB] Get: 177 http://deb.debian.org/debian bookworm/main amd64 libint1 amd64 1.2.1-6 [7512 kB] Get: 178 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 179 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 180 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 181 http://deb.debian.org/debian bookworm/main amd64 liblapack-dev amd64 3.11.0-2 [4631 kB] Get: 182 http://deb.debian.org/debian bookworm/main amd64 libmopac7-1gf amd64 1.15-6+b3 [470 kB] Get: 183 http://deb.debian.org/debian bookworm/main amd64 libmopac7-dev amd64 1.15-6+b3 [552 kB] Get: 184 http://deb.debian.org/debian bookworm/main amd64 libmunge2 amd64 0.5.15-2 [19.5 kB] Get: 185 http://deb.debian.org/debian bookworm/main amd64 libpmix2 amd64 4.2.2-1+b1 [622 kB] Get: 186 http://deb.debian.org/debian bookworm/main amd64 libucx0 amd64 1.13.1-1 [860 kB] Get: 187 http://deb.debian.org/debian bookworm/main amd64 libopenmpi3 amd64 4.1.4-3+b1 [2422 kB] Get: 188 http://deb.debian.org/debian bookworm/main amd64 openmpi-common all 4.1.4-3 [167 kB] Get: 189 http://deb.debian.org/debian bookworm/main amd64 libpmix-dev amd64 4.2.2-1+b1 [902 kB] Get: 190 http://deb.debian.org/debian bookworm/main amd64 openmpi-bin amd64 4.1.4-3+b1 [226 kB] Get: 191 http://deb.debian.org/debian bookworm/main amd64 libopenmpi-dev amd64 4.1.4-3+b1 [970 kB] Get: 192 http://deb.debian.org/debian bookworm/main amd64 libsc-data all 2.3.1-22 [111 kB] Get: 193 http://deb.debian.org/debian bookworm/main amd64 libsc7v5 amd64 2.3.1-22 [2327 kB] Get: 194 http://deb.debian.org/debian bookworm/main amd64 mpi-default-dev amd64 1.14 [5548 B] Get: 195 http://deb.debian.org/debian bookworm/main amd64 libsc-dev amd64 2.3.1-22 [311 kB] Get: 196 http://deb.debian.org/debian bookworm/main amd64 mesa-common-dev amd64 22.3.6-1+deb12u1 [2002 kB] Fetched 124 MB in 5s (24.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. 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Setting up libpsm2-2 (11.2.185-2) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libblkid-dev:amd64 (2.38.1-5+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-8) ... Setting up flex (2.6.4-8.2) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up libpcre2-dev:amd64 (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libselinux1-dev:amd64 (3.4-1+b5) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-8) ... Setting up libglib2.0-bin (2.74.6-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libmopac7-1gf (1.15-6+b3) ... Setting up pkgconf:amd64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.16-1) ... Setting up libnl-route-3-200:amd64 (3.7.0-0.2+b1) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:amd64 (2.4.7-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up pkg-config:amd64 (1.8.1-1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:amd64 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up libnl-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up libllvm15:amd64 (1:15.0.6-4+b1) ... Setting up libx11-6:amd64 (2:1.8.4-2) ... Setting up libhwloc-dev:amd64 (2.9.0-1) ... Setting up libmount-dev:amd64 (2.38.1-5+b1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.114-1+b1) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libx11-xcb1:amd64 (2:1.8.4-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libibverbs1:amd64 (44.0-2) ... Setting up libdrm-nouveau2:amd64 (2.4.114-1+b1) ... Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up ibverbs-providers:amd64 (44.0-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdrm-radeon1:amd64 (2.4.114-1+b1) ... Setting up openssh-client (1:9.2p1-2) ... Setting up libmopac7-dev (1.15-6+b3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libdrm-intel1:amd64 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:amd64 (22.3.6-1+deb12u1) ... Setting up libx11-dev:amd64 (2:1.8.4-2) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libxnvctrl0:amd64 (525.85.05-1) ... Setting up libnl-route-3-dev:amd64 (3.7.0-0.2+b1) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up librdmacm1:amd64 (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libucx0:amd64 (1.13.1-1) ... Setting up libdrm-dev:amd64 (2.4.114-1+b1) ... Setting up libglx-mesa0:amd64 (22.3.6-1+deb12u1) ... Setting up libglx0:amd64 (1.6.0-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libibverbs-dev:amd64 (44.0-2) ... Setting up libhwloc-plugins:amd64 (2.9.0-1) ... Setting up libgl1:amd64 (1.6.0-1) ... Setting up libglx-dev:amd64 (1.6.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up libgl-dev:amd64 (1.6.0-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up libfabric1:amd64 (1.17.0-3) ... Setting up libglib2.0-dev-bin (2.74.6-2) ... Setting up libpmix2:amd64 (4.2.2-1+b1) ... Setting up libopenmpi3:amd64 (4.1.4-3+b1) ... Setting up libglib2.0-dev:amd64 (2.74.6-2) ... Setting up libsc7v5 (2.3.1-22) ... Setting up mesa-common-dev:amd64 (22.3.6-1+deb12u1) ... Setting up libpmix-dev:amd64 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:amd64 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up mpi-default-dev (1.14) ... Setting up libsc-dev (2.3.1-22) ... Setting up libwww-perl (6.68-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up intltool (0.51.0-6) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.3_source.changes dpkg-buildpackage: info: source package libghemical dpkg-buildpackage: info: source version 3.0.0-4.3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alastair McKinstry dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --parallel --with autoreconf dh_clean debian/rules build dh build --parallel --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:26: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:26: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10887: AM_CONFIG_HEADER is expanded from... configure.ac:26: the top level configure.ac:32: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:32: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10887: AM_CONFIG_HEADER is expanded from... configure.ac:32: the top level configure.ac:91: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:91: You should run autoupdate. aclocal.m4:799: AC_PROG_LIBTOOL is expanded from... configure.ac:91: the top level configure.ac:105: warning: The macro `GLIB_GNU_GETTEXT' is obsolete. configure.ac:105: You should run autoupdate. aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... aclocal.m4:73: GLIB_LC_MESSAGES is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_OUTPUT_COMMANDS' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/status.m4:1025: AC_OUTPUT_COMMANDS is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:126: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:126: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:164: warning: The macro `AC_PROG_CC_STDC' is obsolete. configure.ac:164: You should run autoupdate. ./lib/autoconf/c.m4:1666: AC_PROG_CC_STDC is expanded from... configure.ac:164: the top level configure.ac:176: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:176: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:176: the top level configure.ac:86: installing './compile' configure.ac:42: installing './missing' /usr/share/automake-1.16/am/ltlibrary.am: warning: 'libghemical.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.16/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' src/Makefile.am:1: while processing Libtool library 'libghemical.la' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libghemical-3.0.0' dh_auto_configure -- --enable-mpqc --enable-mopac7 --disable-sctest ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mpqc --enable-mopac7 --disable-sctest checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar checking for sh... /bin/bash checking whether make sets $(MAKE)... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/bin/intltool-update checking for intltool-merge... /usr/bin/intltool-merge checking for intltool-extract... /usr/bin/intltool-extract checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for perl... /usr/bin/perl checking for perl >= 5.8.1... 5.36.0 checking for XML::Parser... ok checking for locale.h... yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for libintl.h... yes checking for ngettext in libc... yes checking for dgettext in libc... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/bin/msgfmt checking for xgettext... (cached) /usr/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/bin/sc-config checking SC - version... yes checking for libmopac7 >= 1.13... yes checking for GL/gl.h... yes checking for inline... inline checking for an ANSI C-conforming const... yes checking for egrep... (cached) /bin/grep -E configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : yes checking that generated files are newer than configure... done checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_build make -j15 make[1]: Entering directory '/build/libghemical-3.0.0' Making all in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make all-am make[3]: Entering directory '/build/libghemical-3.0.0/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atom.lo atom.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bond.lo bond.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o constraint.lo constraint.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi 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-Werror=format-security -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm.lo eng1_mm.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_tripos52.lo eng1_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -fPIC -DPIC -o .libs/bond.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -fPIC -DPIC -o .libs/engine.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -fPIC -DPIC -o .libs/atom.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -fPIC -DPIC -o .libs/utility.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -fPIC -DPIC -o .libs/model.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o In file included from local_i18n.h:38, from model.cpp:46: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from model.cpp:35: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | In file included from local_i18n.h:38, from eng1_qm.cpp:27: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm.cpp:24: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | In file included from local_i18n.h:38, from eng1_qm_mpqc.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm_mpqc.cpp:22: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | In file included from /usr/include/sc/util/group/linkage.h:32, from /usr/include/sc/math/scmat/linkage.h:34, from /usr/include/sc/chemistry/qc/scf/linkage.h:37, from eng1_qm_mpqc.cpp:44: /usr/include/sc/scconfig.h:281: warning: "PACKAGE_NAME" redefined 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:102: note: this is the location of the previous definition 102 | #define PACKAGE_NAME "libghemical" | /usr/include/sc/scconfig.h:284: warning: "PACKAGE_STRING" redefined 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:105: note: this is the location of the previous definition 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:287: warning: "PACKAGE_TARNAME" redefined 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:108: note: this is the location of the previous definition 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:293: warning: "PACKAGE_VERSION" redefined 293 | #define PACKAGE_VERSION "" | libghemicalconfig.h:114: note: this is the location of the previous definition 114 | #define PACKAGE_VERSION "3.0.0" | atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 33 | element element::current_element = element("C"); | ^~~ In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 In file included from eng1_qm_mopac.h:30, from eng1_qm_mopac.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ In file included from eng1_qm_mpqc.h:32: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'long unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 172 | i32s tmp1[2] = { strlen(buffer), 0 }; | ~~~~~~^~~~~~~~ utility.cpp: In function 'void DefineSecondaryStructure(model*)': utility.cpp:308:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 308 | i32s tmp1[2] = { n1, n2 }; | ^~ utility.cpp:309:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 309 | i32s tmp2[2] = { n1, n2 + 4 }; | ^~ utility.cpp:349:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:349:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:352:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:352:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:355:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:355:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:358:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:358:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:361:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:361:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:364:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:364:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:367:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:367:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:370:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:370:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In destructor 'virtual eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In member function 'void eng1_qm_mopac::FixMeLaterTSS()': eng1_qm_mopac.cpp:178:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 178 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:181:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -o atom.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_tripos52.lo tab_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -o utility.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_default.lo eng1_mm_default.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -o eng1_mm.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:30: warning: control reaches end of non-void function [-Wreturn-type] 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_default.lo tab_mm_default.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_prmfit.lo eng1_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -fPIC -DPIC -o .libs/tab_mm_default.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -fPIC -DPIC -o .libs/eng1_mm_prmfit.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -o engine.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_prmfit.lo tab_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -fPIC -DPIC -o .libs/tab_mm_prmfit.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf.lo eng1_sf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -fPIC -DPIC -o .libs/eng1_sf.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf_ua.lo eng1_sf_ua.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf_cg.lo eng1_sf_cg.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_ua.cpp -fPIC -DPIC -o .libs/eng1_sf_ua.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_ua.cpp -o eng1_sf_ua.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng2_qm_mm.lo eng2_qm_mm.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o notice.lo notice.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_cg.cpp -fPIC -DPIC -o .libs/eng1_sf_cg.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_cg.cpp -o eng1_sf_cg.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o conjgrad.lo conjgrad.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -fPIC -DPIC -o .libs/notice.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o In file included from local_i18n.h:38, from eng2_qm_mm.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from eng2_qm_mm.cpp:22: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -o eng1_qm_mpqc.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -o notice.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o intcrd.lo intcrd.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -o tab_mm_tripos52.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o In file included from eng2_qm_mm.h:28: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o search.lo search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -fPIC -DPIC -o .libs/search.o eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -o tab_mm_prmfit.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -o eng1_mm_prmfit.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -o eng1_mm_default.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -o search.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pop_ana.lo pop_ana.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sasaeval.lo sasaeval.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -o resonance.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -o model.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/x86_64-linux-gnu atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/12/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -llapack -lblas -L/usr/lib -lmopac7 -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi_cxx -lmpi -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/12/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/12/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/12/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/12/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/bin/ar cr .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o libtool: link: ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) make[3]: Leaving directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making all in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making all in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making all in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making all in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making all in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making all in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making all in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making all in po make[2]: Entering directory '/build/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file sq.po make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_test make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[1]: Entering directory '/build/libghemical-3.0.0' Making check in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making check in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making check in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making check in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making check in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making check in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making check in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making check in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making check in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making check in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making check in po make[2]: Entering directory '/build/libghemical-3.0.0/po' INTLTOOL_EXTRACT="/usr/bin/intltool-extract" XGETTEXT="/usr/bin/xgettext" srcdir=. /usr/bin/intltool-update --gettext-package libghemical --pot rm -f missing notexist srcdir=. /usr/bin/intltool-update -m if [ -r missing -o -r notexist ]; then \ exit 1; \ fi make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --parallel --with autoreconf dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libghemical-3.0.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libghemical-3.0.0' Making install in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make[3]: Entering directory '/build/libghemical-3.0.0/src' /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.a libtool: install: chmod 644 /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.a libtool: install: ranlib /build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/libghemical.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/include/ghemical' /usr/bin/install -c -m 644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/build/libghemical-3.0.0/debian/tmp/usr/include/ghemical' make[3]: Leaving directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making install in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making install in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[4]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/amber' /usr/bin/install -c -m 644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/amber' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/amber' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making install in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[4]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/builder' /usr/bin/install -c -m 644 amino.txt nucleic.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/builder' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/builder' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making install in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making install in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/default' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/default' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/prmfit' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/prmfit' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/tripos52' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/tripos52' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making install in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making install in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_sf/default' /usr/bin/install -c -m 644 loopdip.txt looptor.txt nonbonded.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_sf/default' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[4]: Entering directory '/build/libghemical-3.0.0/bin' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin' make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making install in po make[2]: Entering directory '/build/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/build/libghemical-3.0.0/debian/tmp/usr/share/locale/$lang/LC_MESSAGES; \ /bin/bash /build/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ /usr/bin/install -c -m 644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ /usr/bin/install -c -m 644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ /usr/bin/install -c -m 644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ /usr/bin/install -c -m 644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/sq/LC_MESSAGES/libghemical.mo make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[3]: Entering directory '/build/libghemical-3.0.0' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libghemical.pc '/build/libghemical-3.0.0/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libghemical-3.0.0' make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' debian/rules override_dh_install make[1]: Entering directory '/build/libghemical-3.0.0' dh_install make[1]: Leaving directory '/build/libghemical-3.0.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism Normalized debian/libghemical-data/usr/share/locale/sq/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/fi/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/ru/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/mk/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo dh_compress dh_fixperms dh_missing dh_missing: warning: usr/lib/x86_64-linux-gnu/libghemical.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libghemical-data (2), libghemical-dev (4), libghemical5v5 (2) * dh_installdocs: libghemical-data (0), libghemical-dev (0), libghemical5v5 (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol _ZN2sc11SCMatrixKit21set_default_matrixkitERKNS_3RefIS0_EE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc12Wavefunction7densityERKNS_9SCVector3E used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc4CLHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc13ConnollyShapeC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc6HSOSHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc10MessageGrp22get_default_messagegrpEv used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc19RedundMolecularCoorC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTVN2sc28KeyValValueRefDescribedClassE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc4TCHFC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc15RefSymmSCMatrixC1EPNS_12SymmSCMatrixE used by debian/libghemical5v5/usr/lib/x86_64-linux-gnu/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: 85 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libghemical5v5' in '../libghemical5v5_3.0.0-4.3_amd64.deb'. dpkg-deb: building package 'libghemical-dev' in '../libghemical-dev_3.0.0-4.3_amd64.deb'. dpkg-deb: building package 'libghemical5v5-dbgsym' in '../libghemical5v5-dbgsym_3.0.0-4.3_amd64.deb'. dpkg-deb: building package 'libghemical-data' in '../libghemical-data_3.0.0-4.3_all.deb'. dpkg-genbuildinfo --build=binary -O../libghemical_3.0.0-4.3_amd64.buildinfo dpkg-genchanges --build=binary -O../libghemical_3.0.0-4.3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2731780 and its subdirectories I: Current time: Thu Jun 1 18:38:18 -12 2023 I: pbuilder-time-stamp: 1685687898 Fri Jun 2 06:38:19 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Fri Jun 2 06:38:19 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Fri Jun 2 06:40:08 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Fri Jun 2 06:40:08 UTC 2023 I: libghemical_3.0.0-4.3_amd64.changes: Format: 1.8 Date: Wed, 03 Jun 2020 12:20:43 +0100 Source: libghemical Binary: libghemical-data libghemical-dev libghemical5v5 libghemical5v5-dbgsym Architecture: all amd64 Version: 3.0.0-4.3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Alastair McKinstry Description: libghemical-data - Molecular Modelling Library (data files) libghemical-dev - Molecular Modelling Library (development files) libghemical5v5 - Molecular Modelling Library Changes: libghemical (3.0.0-4.3) unstable; urgency=medium . * Non-maintainer upload; source-only upload * Use debhelper-compat = 12, from level 7 * drop --with autoreconf ; now automatic * dh_install no longer needs --list-missing * Remove obsolete Dm-Upload-Allowed * Standards-Version: 4.5.0 * Update vcs clauses to point to salsa.d.o Checksums-Sha1: 7791d1051f7e3d2f864f0eb3f0f0f127f10e5362 106704 libghemical-data_3.0.0-4.3_all.deb 3757fd3a1be9308ed797c3f5d61a66e28b08c88c 447228 libghemical-dev_3.0.0-4.3_amd64.deb a2dd4423c65a73d68df3cd1da01a02317f79db50 3430616 libghemical5v5-dbgsym_3.0.0-4.3_amd64.deb 128a6e07d0239282c00368ec48f1a19a66a9f46b 377204 libghemical5v5_3.0.0-4.3_amd64.deb d3754d1a0a041336c300c68ef4248e23f4e78499 10867 libghemical_3.0.0-4.3_amd64.buildinfo Checksums-Sha256: 2014cfaa4e2a63e02f745eb10dde0c2209ceb93f5384c0dfae611f31bf61abca 106704 libghemical-data_3.0.0-4.3_all.deb c80a4891961bd034e42aee6388505af3b9144e1fcaf3f57e587951f1c998f80d 447228 libghemical-dev_3.0.0-4.3_amd64.deb e75e790da92ae72e3833befdc671279a8eed45868585e20ef8ed678c77d2fe44 3430616 libghemical5v5-dbgsym_3.0.0-4.3_amd64.deb a89c818efea8e6e737a91ff8cd919be6ea52beff9318e114fc34cfab246107ff 377204 libghemical5v5_3.0.0-4.3_amd64.deb 9c12e347e1f5c3be129220ef7805b20f00a69386a2ddba0a183e00effaca8eec 10867 libghemical_3.0.0-4.3_amd64.buildinfo Files: 7d04670bc2caccfe0f5f81a99b2a1cfa 106704 science optional libghemical-data_3.0.0-4.3_all.deb 24a04bc0c387c48e80d1415448516cc8 447228 libdevel optional libghemical-dev_3.0.0-4.3_amd64.deb 2ba3622f4879fc3c7ebaadbb17124dfb 3430616 debug optional libghemical5v5-dbgsym_3.0.0-4.3_amd64.deb 5de01340542f5ef7186f8e30aa5705d7 377204 libs optional libghemical5v5_3.0.0-4.3_amd64.deb f3a212037cfffa7003b9fe5392c40f2c 10867 science optional libghemical_3.0.0-4.3_amd64.buildinfo Fri Jun 2 06:40:09 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/libghemical_3.0.0-4.3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/libghemical_3.0.0-4.3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/libghemical_3.0.0-4.3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/b1/libghemical_3.0.0-4.3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.dxTbgw3j/b2/libghemical_3.0.0-4.3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.387s) 0.387s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.064s) 0.064s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Jun 2 06:40:11 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 2 06:40:11 UTC 2023 I: libghemical from bookworm built successfully and reproducibly on amd64. Fri Jun 2 06:40:12 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jun 2 06:40:12 UTC 2023 I: Submitting 12K b1/libghemical_3.0.0-4.3_amd64.buildinfo.asc Fri Jun 2 06:40:14 UTC 2023 I: Submitting 12K b2/libghemical_3.0.0-4.3_amd64.buildinfo.asc Fri Jun 2 06:40:15 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 2 06:40:15 UTC 2023 I: Done submitting .buildinfo files. Fri Jun 2 06:40:15 UTC 2023 I: Removing signed libghemical_3.0.0-4.3_amd64.buildinfo.asc files: removed './b1/libghemical_3.0.0-4.3_amd64.buildinfo.asc' removed './b2/libghemical_3.0.0-4.3_amd64.buildinfo.asc'