Mon Apr 17 12:18:26 UTC 2023 I: starting to build pbsuite/bookworm/amd64 on jenkins on '2023-04-17 12:18' Mon Apr 17 12:18:26 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/12609/console.log Mon Apr 17 12:18:26 UTC 2023 I: Downloading source for bookworm/pbsuite=15.8.24+dfsg-7 --2023-04-17 12:18:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pbsuite/pbsuite_15.8.24%2bdfsg-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2281 (2.2K) [text/prs.lines.tag] Saving to: ‘pbsuite_15.8.24+dfsg-7.dsc’ 0K .. 100% 366K=0.006s 2023-04-17 12:18:26 (366 KB/s) - ‘pbsuite_15.8.24+dfsg-7.dsc’ saved [2281/2281] Mon Apr 17 12:18:26 UTC 2023 I: pbsuite_15.8.24+dfsg-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsuite Binary: pbsuite, python3-pbsuite-utils, pbjelly, pbhoney, python3-pbbanana Architecture: all Version: 15.8.24+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://sourceforge.net/projects/pb-jelly Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pbsuite Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all Package-List: pbhoney deb science optional arch=all pbjelly deb science optional arch=all pbsuite deb metapackages optional arch=all python3-pbbanana deb python optional arch=all python3-pbsuite-utils deb python optional arch=all Checksums-Sha1: 83f478b44516f962d98520eba8109da904f84f11 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 07d58cc20fba31059b7e746d970efea746cb2d04 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Checksums-Sha256: f58813e9e3ed9e3f161de8460ed1e1d86be5a817cbeb0e041cc94cbd3e9e3aab 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 21af1c58b49aa955f7d457eec7600c026537229bac726c06a27851260780910d 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Files: c6c55284fb59c4dce96fbc9c6d20fda3 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz eda8be478c389236c85c21b9e00c31ba 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAg4tMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGKcw//cygdY7QMPhjgqgZ/ue6DXrruGi8y W0hzwGvJ9TxjnYKJXLzHx3JLd9449c75W8CpKYdJqCEzKcLbODE7jFUYQ/YIZQoW nednRlEBjC5Yhz81ed6K25qVruGZjRKqmYcVyJP35K+Cc/nQmytQNe/59T/6JrHa GF+6UOdL4KU3A13vXk6IkQLabH5H7Zu7eFnHfODkwoUjBHBFikRIkHG5PGD1hCyk GFP6VpHzUwOdlJBghFc31Ezw05Iw/XipoCbeWLY6yyn8ZP2t0O8VAX13c44eMkzd 7n1dXbotjZGASKxWoCl8ZiDiHohj3kLnL/v0sCwfN+sfknnV+T2wDaAChIuLnWyJ y6x+F6dOyn/lEPZxbyPL6Dvfrx4YdWxvzgImbt9dITE6GT4f1bBsADquXXzheiwI 7UZB823ia0BihnlDIWjzNWEjqtiOOkol9PtInfQubeyF9myeytgn+eD4sDHsmyLk UFJ7162us6JXBGhdvOfmfpYri6+vkGkqSeo0ICjn7hRAgReYl0fwIePS6MaCw2D8 HS+FCo8UgZbRJTzAWCPJhQ9B644QtmBYBw8RmZCCzyhNe35DYdtXlOGNptIOintS F8vKnX8yuQod0ynLC4Y5hF62PHq7mvIPBfNmrDpMrtZDvL9vYLWeRHNKRQQuYHqn WOOzlrz8zVvmgI8= =yuMS -----END PGP SIGNATURE----- Mon Apr 17 12:18:26 UTC 2023 I: Checking whether the package is not for us Mon Apr 17 12:18:26 UTC 2023 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Apr 17 12:18:26 UTC 2023 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Apr 17 12:18:57 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun May 19 06:41:30 -12 2024 I: pbuilder-time-stamp: 1716144090 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-7.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 7 19:05:55 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsuite_15.8.24+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3848979/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e2863643ab6048e4b67bf97fa73d9c09' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3848979' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/pbuilderrc_0leG --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-7.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3848979/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After unpacking 96.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Fetched 24.7 MB in 0s (72.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... 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Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_auto_build python3 -m compileall pbsuite Listing 'pbsuite'... Compiling 'pbsuite/__init__.py'... Listing 'pbsuite/banana'... Compiling 'pbsuite/banana/Banana.py'... Compiling 'pbsuite/banana/MakeOverlapTable.py'... Compiling 'pbsuite/banana/MakeReciprocal.py'... Compiling 'pbsuite/banana/OLCAssembly.py'... Compiling 'pbsuite/banana/Polish.py'... Compiling 'pbsuite/banana/SeqAsm.py'... Compiling 'pbsuite/banana/__init__.py'... Compiling 'pbsuite/banana/chunkyBlasr.py'... Listing 'pbsuite/honey'... Compiling 'pbsuite/honey/ComplexResolver.py'... Compiling 'pbsuite/honey/Force.py'... Compiling 'pbsuite/honey/HSpots.py'... Compiling 'pbsuite/honey/Honey.py'... Compiling 'pbsuite/honey/SVMachines.py'... Compiling 'pbsuite/honey/TGraf.py'... Compiling 'pbsuite/honey/Valid.py'... Compiling 'pbsuite/honey/__init__.py'... Compiling 'pbsuite/honey/bakH.py'... Compiling 'pbsuite/honey/bampie.py'... Compiling 'pbsuite/honey/massivePhrap.py'... Compiling 'pbsuite/honey/realign.py'... Compiling 'pbsuite/honey/recallSpots.py'... Compiling 'pbsuite/honey/spotH5Merge.py'... Compiling 'pbsuite/honey/spotH5dump.py'... Compiling 'pbsuite/honey/spotToBed.py'... Compiling 'pbsuite/honey/spotToVCF.py'... Listing 'pbsuite/honey/svm'... Listing 'pbsuite/honey/svm/ecoli_jul1.svm'... Listing 'pbsuite/honey/svm/ecoli_jul12.svm'... Listing 'pbsuite/jelly'... Compiling 'pbsuite/jelly/Assembly.py'... Compiling 'pbsuite/jelly/Collection.py'... Compiling 'pbsuite/jelly/Extraction.py'... Compiling 'pbsuite/jelly/GetSubs.py'... Compiling 'pbsuite/jelly/Jelly.py'... Compiling 'pbsuite/jelly/QFix.py'... Compiling 'pbsuite/jelly/Setup.py'... Compiling 'pbsuite/jelly/Stages.py'... Compiling 'pbsuite/jelly/Support.py'... Compiling 'pbsuite/jelly/__init__.py'... Compiling 'pbsuite/jelly/m4pie.py'... Listing 'pbsuite/utils'... Compiling 'pbsuite/utils/BamStat.py'... Compiling 'pbsuite/utils/BedIO.py'... Compiling 'pbsuite/utils/CommandRunner.py'... Compiling 'pbsuite/utils/FileHandlers.py'... Compiling 'pbsuite/utils/VCFIO.py'... Compiling 'pbsuite/utils/__init__.py'... Compiling 'pbsuite/utils/bamToFastq.py'... Compiling 'pbsuite/utils/blasrToBed.py'... Compiling 'pbsuite/utils/fakeQuals.py'... Compiling 'pbsuite/utils/fastqDivide.py'... Compiling 'pbsuite/utils/fastqSplit.py'... Compiling 'pbsuite/utils/jellyoutputrename.py'... Compiling 'pbsuite/utils/longCCSCombine.py'... Compiling 'pbsuite/utils/mapStats.py'... Compiling 'pbsuite/utils/mergeFaQu.py'... Compiling 'pbsuite/utils/quickN50.py'... Compiling 'pbsuite/utils/readSummary.py'... Compiling 'pbsuite/utils/setupLogging.py'... Compiling 'pbsuite/utils/summarizeAssembly.py'... Listing 'pbsuite/utils/vcfTemplates'... Compiling 'pbsuite/utils/vcfTemplates/spotToVCF.py'... make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_amd64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3848979 and its subdirectories I: Current time: Sun May 19 06:41:59 -12 2024 I: pbuilder-time-stamp: 1716144119 Mon Apr 17 12:18:58 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Apr 17 12:18:58 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Apr 17 12:23:27 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Apr 17 12:23:28 UTC 2023 I: pbsuite_15.8.24+dfsg-7_amd64.changes: Format: 1.8 Date: Mon, 08 Feb 2021 12:31:56 +0530 Source: pbsuite Binary: pbhoney pbjelly pbsuite python3-pbbanana python3-pbsuite-utils Architecture: all Version: 15.8.24+dfsg-7 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pbhoney - genomic structural variation discovery pbjelly - genome assembly upgrading tool pbsuite - software for Pacific Biosciences sequencing data python3-pbbanana - additional utilities for the pbsuite python3-pbsuite-utils - software for Pacific Biosciences sequencing data -- Python utilit Changes: pbsuite (15.8.24+dfsg-7) unstable; urgency=high . * Team Upload. * Add skip-not-installable restriction Checksums-Sha1: a5ba04d2e83f01b99dc9085226c3b5aa25225ae2 1057276 pbhoney_15.8.24+dfsg-7_all.deb 7dc1ffddeb534fe79bbbbfa32fc1d8caa2f2bbce 969140 pbjelly_15.8.24+dfsg-7_all.deb fa326f4d05e1d88778ba62c498e82a16d864ce24 5228 pbsuite_15.8.24+dfsg-7_all.deb 8c9a7fb6501821bde5f3c98a663929677813585c 6540 pbsuite_15.8.24+dfsg-7_amd64.buildinfo 8236eeb20ba2ca8a6ede1da7d1e80def52bdb769 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb c24e6b0b5832abfc7901bb771ad3014a24611fa2 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Checksums-Sha256: f1e25cd74a87a023ad7859ec7f64abcb49c41a69281471187dfc767f2a93ae35 1057276 pbhoney_15.8.24+dfsg-7_all.deb 4fd1d5fc298460a7ec79251ba0ad0df5b6a47083835bc4ed73fa6caf4fbd0de9 969140 pbjelly_15.8.24+dfsg-7_all.deb ac8a927aa3663277ca0df0023d9d29540257c55af470ec69596f27981cb59bcd 5228 pbsuite_15.8.24+dfsg-7_all.deb 0443d1407263109a4308ee3494e4011bd2ef1f85bf7f9b4a9070e22927bf7c9d 6540 pbsuite_15.8.24+dfsg-7_amd64.buildinfo 6a4382ddf5bd340817de815c5b7b96075b4300d9e26f4a2fbe29a191f2eb5f75 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb 066f1797ab8f7b05e9bf7d6362fdbeb80290c2fcfaaf82b104527c3b69a94c0a 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Files: 9306e376114e345a8df9d60c1c614ac7 1057276 science optional pbhoney_15.8.24+dfsg-7_all.deb 52d13269da2c955beb5fe07603f0bd41 969140 science optional pbjelly_15.8.24+dfsg-7_all.deb a42be9cdc9f976bc35df895bc6b8ba01 5228 metapackages optional pbsuite_15.8.24+dfsg-7_all.deb 366b179a7297fa9a2dd3e910ce109e15 6540 science optional pbsuite_15.8.24+dfsg-7_amd64.buildinfo 54179a1997cd9024c679e1e506e073dd 19852 python optional python3-pbbanana_15.8.24+dfsg-7_all.deb 20dfb3c19d68b4be29d07947011beb69 508472 python optional python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Mon Apr 17 12:23:29 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/pbsuite_15.8.24+dfsg-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/pbsuite_15.8.24+dfsg-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/pbsuite_15.8.24+dfsg-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/b1/pbsuite_15.8.24+dfsg-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aeAR6Wxj/b2/pbsuite_15.8.24+dfsg-7_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.338s) 0.338s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Apr 17 12:23:31 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Mon Apr 17 12:23:31 UTC 2023 I: pbsuite from bookworm built successfully and reproducibly on amd64. Mon Apr 17 12:23:32 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Apr 17 12:23:32 UTC 2023 I: Submitting 8.0K b1/pbsuite_15.8.24+dfsg-7_amd64.buildinfo.asc Mon Apr 17 12:23:33 UTC 2023 I: Submitting 8.0K b2/pbsuite_15.8.24+dfsg-7_amd64.buildinfo.asc Mon Apr 17 12:23:34 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Apr 17 12:23:34 UTC 2023 I: Done submitting .buildinfo files. Mon Apr 17 12:23:34 UTC 2023 I: Removing signed pbsuite_15.8.24+dfsg-7_amd64.buildinfo.asc files: removed './b1/pbsuite_15.8.24+dfsg-7_amd64.buildinfo.asc' removed './b2/pbsuite_15.8.24+dfsg-7_amd64.buildinfo.asc'