Wed May 3 13:44:32 UTC 2023 I: starting to build python-biotools/bookworm/amd64 on jenkins on '2023-05-03 13:44' Wed May 3 13:44:32 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/11135/console.log Wed May 3 13:44:32 UTC 2023 I: Downloading source for bookworm/python-biotools=1.2.12-5 --2023-05-03 13:44:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-biotools/python-biotools_1.2.12-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2077 (2.0K) [text/prs.lines.tag] Saving to: ‘python-biotools_1.2.12-5.dsc’ 0K .. 100% 28.7M=0s 2023-05-03 13:44:33 (28.7 MB/s) - ‘python-biotools_1.2.12-5.dsc’ saved [2077/2077] Wed May 3 13:44:33 UTC 2023 I: python-biotools_1.2.12-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-biotools Binary: python3-biotools Architecture: all Version: 1.2.12-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/sonwell/biotools Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/python-biotools Vcs-Git: https://salsa.debian.org/med-team/python-biotools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 12), dh-python, python3-all Package-List: python3-biotools deb python optional arch=all Checksums-Sha1: 23cd9acf0bfc3caf9b2896a8eb6ca9cd7370502f 25358 python-biotools_1.2.12.orig.tar.gz 3b11af4efe76baf0ee6bb96438031ae3987f48a7 7412 python-biotools_1.2.12-5.debian.tar.xz Checksums-Sha256: d2053c89d9a375927d8f43537e1f753a3503d2fae91eacc2714caf2957792e67 25358 python-biotools_1.2.12.orig.tar.gz 98270eb43200a495304c48754c94ca1b7b57f4d0aa66e9ce9986a8d343eb4ef1 7412 python-biotools_1.2.12-5.debian.tar.xz Files: ff14083b4dae41a467b9ab94b2cad0c1 25358 python-biotools_1.2.12.orig.tar.gz 75ff6f134ef61c538a793130801fff20 7412 python-biotools_1.2.12-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl3zfBERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtfhAAgRBaQRk7GAsy0bPpp1zJxuFcXcyhlvdJ gR5+M6eLOIzu7aRSVocgRwK91A1FfQTQZbCBEwW4T6watAd2u4+WwdD2YzwHZYMO J/qe4MeEpcbqOiE1WbFPBrNAtwn53CYJwEF1zZ8WECUtOfSgh3mnTyzjncjbqmG1 KmIJka7NdPgJpMhclWWo2ELG3ONTDsEG2SR2/747JhcmcRIw83arDfgP8uL/1DxD ALbuuOsG421gHTD4scxDKA/0dnKE6Ub5ytdxkjLraEDL9vG/i3FyflHQe4+94eXl g9qN4ttnlVjLKGre6W4ZwIYSMPXADly5oajrxwqMSzPMqAALY/mkQlyvYuZ0vm+f Dh0KhYlp7X3kiwwtoA9TjvOKglqmxOYZ5DZpB1LbGrhpAkVLLajdYCMvxuZNmJqT AN1FEsQsov97bZs4+nSfxOTX/O2gw7MNis5AOcgHshBxK8q2KyGFP0InhA+//3dw 3FqNMhqZ/poSOuo7lYL37mbDlPwpiDrNc6edeiKeRWT86Ge1jV28XWVmqnwgXb8t b6R4+dMg14ilEdl4bDHqj1nVgLibzOv6hcHuf6JRzGLQgbDYaPDlon+EvgBWaJFv kGiMbivLl/Kh+V0ifw8RPUcfYdUCdXQChItJW/3MajDOPRctMmN002hKNWSsHnzd RIYh23Wefs4= =/6AB -----END PGP SIGNATURE----- Wed May 3 13:44:33 UTC 2023 I: Checking whether the package is not for us Wed May 3 13:44:33 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed May 3 13:44:33 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed May 3 13:47:18 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 3 01:44:35 -12 2023 I: pbuilder-time-stamp: 1683121475 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biotools_1.2.12-5.dsc] I: copying [./python-biotools_1.2.12.orig.tar.gz] I: copying [./python-biotools_1.2.12-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 12 23:54:57 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-biotools_1.2.12-5.dsc: no acceptable signature found dpkg-source: info: extracting python-biotools in python-biotools-1.2.12 dpkg-source: info: unpacking python-biotools_1.2.12.orig.tar.gz dpkg-source: info: unpacking python-biotools_1.2.12-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying add_missing_grepseq.patch dpkg-source: info: applying 2to3_grepseq.patch dpkg-source: info: applying fix_python_interpreter.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1177090/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c06e9c38d1dc43c2957029be1713ca1d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1177090' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/pbuilderrc_7WsX --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/b1 --logfile b1/build.log python-biotools_1.2.12-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1177090/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After unpacking 96.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Fetched 24.7 MB in 1s (20.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19912 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../3-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... 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Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-all (3.11.2-1+b1) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-biotools-1.2.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biotools_1.2.12-5_source.changes dpkg-buildpackage: info: source package python-biotools dpkg-buildpackage: info: source version 1.2.12-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /build/python-biotools-1.2.12/setup.py:3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running clean removing '/build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/python-biotools-1.2.12/setup.py:3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /build/python-biotools-1.2.12/setup.py:3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running build running build_py creating /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/complement.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/clustal.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/annotation.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/align.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/BLAST.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/translate.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/sequence.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools copying src/__init__.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools creating /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/variance.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/run.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/predict.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/loaddata.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/cluster.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/report.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/renamer.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/plot.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/options.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis copying src/analysis/__init__.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis creating /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/manager.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/phylip.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/gff.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/fastq.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/fasta.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/clustal.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO copying src/IO/__init__.py -> /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO running build_scripts creating build creating build/scripts-3.11 copying and adjusting prok-geneseek -> build/scripts-3.11 changing mode of build/scripts-3.11/prok-geneseek from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build; python3.11 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biotools/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-biotools-1.2.12/debian/python3-biotools /build/python-biotools-1.2.12/setup.py:3: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup running install running build running build_py running build_scripts running install_lib creating /build/python-biotools-1.2.12/debian/python3-biotools/usr creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11 creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/__pycache__/annotation.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/__pycache__/sequence.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/__pycache__/__init__.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/__pycache__ creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/manager.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/clustal.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/gff.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/fastq.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/fasta.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__pycache__/__init__.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/__init__.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/clustal.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/fasta.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/fastq.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/gff.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/phylip.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/IO/manager.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/__pycache__/__init__.cpython-311.pyc -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/__pycache__ copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/__init__.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/options.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/plot.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/renamer.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/report.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/cluster.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/loaddata.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/predict.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/run.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/analysis/variance.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/__init__.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/sequence.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/translate.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/BLAST.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/align.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/annotation.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/clustal.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools copying /build/python-biotools-1.2.12/.pybuild/cpython3_3.11_biotools/build/biotools/complement.py -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/clustal.py to clustal.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/fasta.py to fasta.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/fastq.py to fastq.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/gff.py to gff.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/phylip.py to phylip.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/IO/manager.py to manager.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/options.py to options.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/plot.py to plot.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/renamer.py to renamer.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/report.py to report.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/cluster.py to cluster.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/loaddata.py to loaddata.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/predict.py to predict.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/run.py to run.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/analysis/variance.py to variance.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/sequence.py to sequence.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/translate.py to translate.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/BLAST.py to BLAST.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/align.py to align.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/annotation.py to annotation.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/clustal.py to clustal.cpython-311.pyc byte-compiling /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools/complement.py to complement.cpython-311.pyc running install_scripts creating /build/python-biotools-1.2.12/debian/python3-biotools/usr/bin copying build/scripts-3.11/prok-geneseek -> /build/python-biotools-1.2.12/debian/python3-biotools/usr/bin changing mode of /build/python-biotools-1.2.12/debian/python3-biotools/usr/bin/prok-geneseek to 755 running install_egg_info Writing /build/python-biotools-1.2.12/debian/python3-biotools/usr/lib/python3.11/dist-packages/biotools-1.2.12.egg-info dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biotools' in '../python3-biotools_1.2.12-5_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biotools_1.2.12-5_amd64.buildinfo dpkg-genchanges --build=binary -O../python-biotools_1.2.12-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1177090 and its subdirectories I: Current time: Wed May 3 01:47:17 -12 2023 I: pbuilder-time-stamp: 1683121637 Wed May 3 13:47:18 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed May 3 13:47:18 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Wed May 3 13:49:58 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Wed May 3 13:49:59 UTC 2023 I: python-biotools_1.2.12-5_amd64.changes: Format: 1.8 Date: Fri, 13 Dec 2019 12:13:05 +0100 Source: python-biotools Binary: python3-biotools Architecture: all Version: 1.2.12-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-biotools - Python3 bioinformatics utilities for high-throughput genomic sequ Closes: 937607 Changes: python-biotools (1.2.12-5) unstable; urgency=medium . * Really drop Python2 support Closes: #937607 * Standards-Version: 4.4.1 * Set upstream metadata fields: Bug-Database. Checksums-Sha1: 54c73c2324dca95b0173d94e043a2ca2efead083 5386 python-biotools_1.2.12-5_amd64.buildinfo 815140e63c84d7da00600dd43995d052e0d5cf01 28828 python3-biotools_1.2.12-5_all.deb Checksums-Sha256: 8d4e03e72680a7458abb405a208b09fe383be1a707b0aa009791546a53daf247 5386 python-biotools_1.2.12-5_amd64.buildinfo bbabf92ce52ec7b264ec1cc2f9d286833019aab4a9a29ed2b206c7433f213929 28828 python3-biotools_1.2.12-5_all.deb Files: 9ab13b88e324e29d4f7c1e6a24054485 5386 python optional python-biotools_1.2.12-5_amd64.buildinfo 391e047bc23a51c8f38a1f3461e43611 28828 python optional python3-biotools_1.2.12-5_all.deb Wed May 3 13:50:00 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/python-biotools_1.2.12-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/python-biotools_1.2.12-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/python-biotools_1.2.12-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/b1/python-biotools_1.2.12-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cRJ6cEiS/b2/python-biotools_1.2.12-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.305s) 0.305s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed May 3 13:50:01 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed May 3 13:50:01 UTC 2023 I: python-biotools from bookworm built successfully and reproducibly on amd64. Wed May 3 13:50:02 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 3 13:50:02 UTC 2023 I: Submitting 8.0K b1/python-biotools_1.2.12-5_amd64.buildinfo.asc Wed May 3 13:50:03 UTC 2023 I: Submitting 8.0K b2/python-biotools_1.2.12-5_amd64.buildinfo.asc Wed May 3 13:50:04 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 3 13:50:04 UTC 2023 I: Done submitting .buildinfo files. Wed May 3 13:50:04 UTC 2023 I: Removing signed python-biotools_1.2.12-5_amd64.buildinfo.asc files: removed './b1/python-biotools_1.2.12-5_amd64.buildinfo.asc' removed './b2/python-biotools_1.2.12-5_amd64.buildinfo.asc'