Fri May 12 21:04:05 UTC 2023 I: starting to build python-freecontact/bookworm/amd64 on jenkins on '2023-05-12 21:04' Fri May 12 21:04:05 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/11938/console.log Fri May 12 21:04:05 UTC 2023 I: Downloading source for bookworm/python-freecontact=1.1-6 --2023-05-12 21:04:05-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-freecontact/python-freecontact_1.1-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘python-freecontact_1.1-6.dsc’ 0K .. 100% 141M=0s 2023-05-12 21:04:05 (141 MB/s) - ‘python-freecontact_1.1-6.dsc’ saved [2224/2224] Fri May 12 21:04:06 UTC 2023 I: python-freecontact_1.1-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-freecontact Binary: python3-freecontact Architecture: any Version: 1.1-6 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Alexandre Mestiashvili Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev Package-List: python3-freecontact deb python optional arch=any Checksums-Sha1: 18a0f44daa9d1a10cdcce0e48cf7b0d914228868 65968 python-freecontact_1.1.orig.tar.gz 7a9de349b76dc4501731f86872282d56138f7a1e 4152 python-freecontact_1.1-6.debian.tar.xz Checksums-Sha256: 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 65968 python-freecontact_1.1.orig.tar.gz 0a301a4f70fb9bb406e15dd697f8ca41399a7f7f3e00cc175aae3d9dbd98fe85 4152 python-freecontact_1.1-6.debian.tar.xz Files: 17a99d6514c125b4005f0cd494ae81a4 65968 python-freecontact_1.1.orig.tar.gz 68d4b0538e0a6b8ebc3e0e34d6a92734 4152 python-freecontact_1.1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHqy/URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHqig/+ONI/usu0uWSit22GIJBB+TfYVyVlTpEH XSY2TpJQsV0orxif2QcmUYCqNvyw1MaYcmNRaeNX00RUQb/sC5MEIkjsMwstLf3A 9DAnvOLdtCoIQUq4+kvLqiTPeLoLd64291Yh6TDnKvtV1OjOUs28zYP2YevF4qj0 jVAPlSVU5ZWx157NFZyo020Dv40XamG6Kkob4NFXhS7+CaMNeDMDrwta/Ic+BQKZ ss3Dtq4qXVCQ++dNU27pI7huQua1dqPTcsb9YN5n+aw+wO3Ek+i1CV8rme8RcP1k OZs4ZXeoPzBlTb4nw24j/OmDgrXuQ/7zkWKT0nq+eQMw20EsX4uky+4lpmU2h15L Whm2gaELI2AmndWMVvwjwXaqUAaNRrQ+mJOd6dCX2Gk1lNoLy7lXOUtSM32uK3Fp HWG/g5iECfU/nCuu7P0edWgwWpcTLD7CSSJQzzV45nmFZft10uqS2k79P3A2rQSz qjDoSFgdLfbITHfYPo6D6axexT0fv5ak5jgacEYZvYXIJN1+oSxajG9Wk6jEQck0 qH4odCQE2SFj2SqH3LHJGFCGXzCjY88v4NLCFAGtWYQzhWxTZrvJ7B8FsdYEGL6a MumBcnj/TBPgcAbv/8bIdzR49sYh3DUbo04P+blARVb/1y7pLTAxDe2ydhdOOeTB juODpzlFk7U= =bZzQ -----END PGP SIGNATURE----- Fri May 12 21:04:06 UTC 2023 I: Checking whether the package is not for us Fri May 12 21:04:06 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri May 12 21:04:06 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri May 12 21:07:50 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 12 09:04:08 -12 2023 I: pbuilder-time-stamp: 1683925448 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freecontact_1.1-6.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 21 03:06:29 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-freecontact_1.1-6.dsc: no acceptable signature found dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying py3_test_fixes.patch dpkg-source: info: applying py3_boost.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2889392/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f865289817be4e7d94edee119e342d96' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2889392' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/pbuilderrc_3fM6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/b1 --logfile b1/build.log python-freecontact_1.1-6.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2889392/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 47.3 MB of archives. After unpacking 293 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 11 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-20 [9510 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74.0 amd64 1.74.0+ds1-20 [289 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 53 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 libboost-python1.74-dev amd64 1.74.0+ds1-20 [310 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 libboost-python-dev amd64 1.74.0.3 [4632 B] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libfreecontact0v5 amd64 1.0.21-12 [70.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libfreecontact-dev amd64 1.0.21-12 [78.2 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 65 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 66 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Fetched 47.3 MB in 1s (33.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. 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Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20346 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Preparing to unpack .../55-python3-all-dev_3.11.2-1+b1_amd64.deb ... Unpacking python3-all-dev (3.11.2-1+b1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-20) ... Setting up libicu72:amd64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-python1.74.0 (1.74.0+ds1-20) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.21-12) ... Setting up libfreecontact0v5:amd64 (1.0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libfreecontact-dev:amd64 (1.0.21-12) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-all (3.11.2-1+b1) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-20) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-6_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean /build/python-freecontact-1.1/setup.py:18: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running clean removing '/build/python-freecontact-1.1/.pybuild/cpython3_3.11_freecontact/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config /build/python-freecontact-1.1/setup.py:18: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build /build/python-freecontact-1.1/setup.py:18: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running build running build_ext building 'freecontact' extension creating build creating build/temp.linux-x86_64-3.11 creating build/temp.linux-x86_64-3.11/src x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/freecontact.cpp -o build/temp.linux-x86_64-3.11/src/freecontact.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from src/freecontact.cpp:17: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.11/src/freecontact.o -lfreecontact -lboost_python311 -o /build/python-freecontact-1.1/.pybuild/cpython3_3.11_freecontact/build/freecontact.cpython-311-x86_64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p 3.11 I: pybuild base:240: python3.11 /build/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads SSE2 veczweight, wchunk = 128 total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.009889 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.206389 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 10.5891 secs, inverted matrix (incl LUf) in 52.6608 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 53.4275 secs . ---------------------------------------------------------------------- Ran 3 tests in 53.469s OK  !!!Skipping the rest of the tests for python3.11, need to be fixed! rm -fr -- /tmp/dh-xdg-rundir-8P0OZr55 make[1]: Leaving directory '/build/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install --destdir=debian/python3-freecontact/ -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d /build/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-freecontact-1.1/debian/python3-freecontact /build/python-freecontact-1.1/setup.py:18: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.core import setup, Extension running install running build running build_ext running install_lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.11 creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.11/dist-packages copying /build/python-freecontact-1.1/.pybuild/cpython3_3.11_freecontact/build/freecontact.cpython-311-x86_64-linux-gnu.so -> /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.11/dist-packages running install_egg_info Writing /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.11/dist-packages/python_freecontact-1.1.egg-info dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/.debhelper/generated/python3-freecontact/dh_installchangelogs.dch.trimmed debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild', '--builddirectory=/build/python-freecontact-1.1/builddir']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:183: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:204: processing package python3-freecontact... D: dh_python3 fs:52: moving files from debian/python3-freecontact/usr/lib/python3.11/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-freecontact D: dh_python3 depends:281: D={'python3 (>= 3.11~)', 'python3 (<< 3.12)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_dwz -a -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dwz -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-x86_64-linux-gnu.so dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-x86_64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/13/995500fdb9bd98868fba75e56583e97399df7c.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/13/995500fdb9bd98868fba75e56583e97399df7c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/13/995500fdb9bd98868fba75e56583e97399df7c.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-x86_64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym install -m0755 -d debian/.debhelper/python3-freecontact dh_makeshlibs -a -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-x86_64-linux-gnu.so dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" -DBuild-Ids=13995500fdb9bd98868fba75e56583e97399df7c -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/python3-freecontact chmod 0644 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-6_amd64.deb'. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-6_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-6_amd64.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2889392 and its subdirectories I: Current time: Fri May 12 09:07:50 -12 2023 I: pbuilder-time-stamp: 1683925670 Fri May 12 21:07:50 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri May 12 21:07:50 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri May 12 21:13:04 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri May 12 21:13:04 UTC 2023 I: python-freecontact_1.1-6_amd64.changes: Format: 1.8 Date: Fri, 21 Jan 2022 15:57:08 +0100 Source: python-freecontact Binary: python3-freecontact python3-freecontact-dbgsym Architecture: amd64 Version: 1.1-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-freecontact - fast protein contact predictor - binding for Python3 Changes: python-freecontact (1.1-6) unstable; urgency=medium . * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 8759d4c492b35f225c5f780c760f3145a870770a 6424 python-freecontact_1.1-6_amd64.buildinfo 3bd00243546763cc08ae800c5da6f6b14f38cc82 445400 python3-freecontact-dbgsym_1.1-6_amd64.deb 188020728a25e3975e9c87747430a50dddaa2f1b 72672 python3-freecontact_1.1-6_amd64.deb Checksums-Sha256: 4df51766d79e54734575eb90c64d8d3245e7a39d5e3f13283ca5abca6004ce36 6424 python-freecontact_1.1-6_amd64.buildinfo 89252c8fdf229e6faa3576215f90ad1fc5b070f95fca4ca67ec4e6059b97c920 445400 python3-freecontact-dbgsym_1.1-6_amd64.deb 90956631ceca77badf4d29aee7b0599f70dada33ea6acc681b167d5be8d1d48b 72672 python3-freecontact_1.1-6_amd64.deb Files: c10a1cd0c8292c567fe36045f6b7952f 6424 python optional python-freecontact_1.1-6_amd64.buildinfo 73b343fa0027693f34a3666d2a13da32 445400 debug optional python3-freecontact-dbgsym_1.1-6_amd64.deb 753365bbe7eae79f168abcd56993d3ad 72672 python optional python3-freecontact_1.1-6_amd64.deb Fri May 12 21:13:11 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/python-freecontact_1.1-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/python-freecontact_1.1-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/python-freecontact_1.1-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/b1/python-freecontact_1.1-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.JCIHpL0o/b2/python-freecontact_1.1-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 4.544s) 4.544s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.841s) 0.841s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Fri May 12 21:14:09 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri May 12 21:14:10 UTC 2023 I: python-freecontact from bookworm built successfully and reproducibly on amd64. Fri May 12 21:14:12 UTC 2023 I: Submitting .buildinfo files to external archives: Fri May 12 21:14:12 UTC 2023 I: Submitting 8.0K b1/python-freecontact_1.1-6_amd64.buildinfo.asc Fri May 12 21:14:14 UTC 2023 I: Submitting 8.0K b2/python-freecontact_1.1-6_amd64.buildinfo.asc Fri May 12 21:14:18 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 12 21:14:18 UTC 2023 I: Done submitting .buildinfo files. Fri May 12 21:14:18 UTC 2023 I: Removing signed python-freecontact_1.1-6_amd64.buildinfo.asc files: removed './b1/python-freecontact_1.1-6_amd64.buildinfo.asc' removed './b2/python-freecontact_1.1-6_amd64.buildinfo.asc'