Sun Apr 23 20:32:24 UTC 2023 I: starting to build python-pbcommand/bookworm/amd64 on jenkins on '2023-04-23 20:32' Sun Apr 23 20:32:24 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/16141/console.log Sun Apr 23 20:32:24 UTC 2023 I: Downloading source for bookworm/python-pbcommand=2.1.1+git20220616.3f2e6c2-2 --2023-04-23 20:32:24-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pbcommand/python-pbcommand_2.1.1%2bgit20220616.3f2e6c2-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2541 (2.5K) [text/prs.lines.tag] Saving to: ‘python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc’ 0K .. 100% 301M=0s 2023-04-23 20:32:24 (301 MB/s) - ‘python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc’ saved [2541/2541] Sun Apr 23 20:32:24 UTC 2023 I: python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pbcommand Binary: python3-pbcommand Architecture: all Version: 2.1.1+git20220616.3f2e6c2-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://pbcommand.readthedocs.org/en/latest/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/python-pbcommand Vcs-Git: https://salsa.debian.org/med-team/python-pbcommand.git Testsuite: autopkgtest Testsuite-Triggers: python3-pbcore, python3-pytest, python3-pytest-cov, python3-pytest-xdist Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-jsonschema, python3-avro, python3-numpy, python3-requests, python3-iso8601, python3-pytest , python3-pytest-cov , python3-pytest-xdist , python3-pbcore Package-List: python3-pbcommand deb python optional arch=all Checksums-Sha1: 93cbfddffe9ffc7e0b4072301d70a68eb45e20b7 105388 python-pbcommand_2.1.1+git20220616.3f2e6c2.orig.tar.xz b74188326b2a37c1cabaca758712502eef6c43ae 5684 python-pbcommand_2.1.1+git20220616.3f2e6c2-2.debian.tar.xz Checksums-Sha256: 78964eb1409eb7df2d16c14891653c49c95246f0cf648a7cc11c25d8245e0855 105388 python-pbcommand_2.1.1+git20220616.3f2e6c2.orig.tar.xz 1905eaaa125c4b26f20dcbd13e08f8e4fdad8840f5db7cd1cd8cf0b90a3b563d 5684 python-pbcommand_2.1.1+git20220616.3f2e6c2-2.debian.tar.xz Files: f9ff236181d9a1fe48020205bd0d3dd6 105388 python-pbcommand_2.1.1+git20220616.3f2e6c2.orig.tar.xz ddca9419df605e2b2df8e8dd51821711 5684 python-pbcommand_2.1.1+git20220616.3f2e6c2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEbJ0QSEqa5Mw4X3xxgj6WdgbDS5YFAmMIgikTHHV0a2Fyc2hA ZGViaWFuLm9yZwAKCRCCPpZ2BsNLlrJJD/9PsAolTRORLlkH5BjplJ9iCIQJ/LPP L4oh0jpJ+9+8zJglGsVeSCAIx5BLq965YTt73qe5iqQQkMFd0GR0H8cUYGi39U4X fmQ79Zx/dUvC3C+K7Dr6YEfl1aar0f3/q+I25oZbOmjH5tKbfMDN/BARHKV/j5iM WCG0hksKGRtPoNOis3S+/xawIMKAdh7b89DjYdiLXE8eoJuRvOnrTulK5zV3hcnJ cGARiHud4U+R/mWDLMwBrHp3Wb4Pe4RPOUmtY9WjkjewBKvIF6F9ysuSnknbhQSs y+fLtBEbTlvb/oaopobEHwsv9xE6Jh7o+rvPTMnv+MM0J/fKV3WNYwZZJAwSwb3z Vhwd0I/7CZ/B25mpS5o8DxlYnZEl2raTl64otBkLNhNHVR9L9rdtkto1ACOmX+Bm myV1pVxFRSpJGSYsxUZpPxv+0BiioH5mhqA1JKX79HzJPEr1wJu21w6whS/Et/6G XfRQmW3H+t0D2rgBV66tbCmfNPx3Ugw11tax4X0MsHd5KjRlsuMHTmHJqUdUhK+4 Np1QyQquu3M7AI1sywcGPLx3J2/JSIpXLTDZ3WYMM5YZfUNbcmCzocsmCypTeTwF 4RfY2QZ/KdBtAKC3LDWtyZ4g1xkR97usvldMbaagZio04rDkraYbbdrb7Se51Qyj +vWKwrEUw40Fhg== =0z6v -----END PGP SIGNATURE----- Sun Apr 23 20:32:24 UTC 2023 I: Checking whether the package is not for us Sun Apr 23 20:32:24 UTC 2023 I: Starting 1st build on remote node ionos15-amd64.debian.net. Sun Apr 23 20:32:24 UTC 2023 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Sun Apr 23 20:42:22 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 25 14:55:31 -12 2024 I: pbuilder-time-stamp: 1716692131 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc] I: copying [./python-pbcommand_2.1.1+git20220616.3f2e6c2.orig.tar.xz] I: copying [./python-pbcommand_2.1.1+git20220616.3f2e6c2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 25 20:19:53 2022 -12 gpgv: using RSA key 6C9D10484A9AE4CC385F7C71823E967606C34B96 gpgv: issuer "utkarsh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc: no acceptable signature found dpkg-source: info: extracting python-pbcommand in python-pbcommand-2.1.1+git20220616.3f2e6c2 dpkg-source: info: unpacking python-pbcommand_2.1.1+git20220616.3f2e6c2.orig.tar.xz dpkg-source: info: unpacking python-pbcommand_2.1.1+git20220616.3f2e6c2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying fix_version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60181/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='36b05522913a4b0e986d9f908179eca3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60181' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/pbuilderrc_zNEN --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/b1 --logfile b1/build.log python-pbcommand_2.1.1+git20220616.3f2e6c2-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 6.1.0-0.deb11.5-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.12-1~bpo11+1 (2023-03-05) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 2023 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 2023 more -rwsr-xr-x 1 root root 59704 Mar 22 2023 mount -rwxr-xr-x 1 root root 18744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/60181/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-jsonschema, python3-avro, python3-numpy, python3-requests, python3-iso8601, python3-pytest, python3-pytest-cov, python3-pytest-xdist, python3-pbcore dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-avro; however: Package python3-avro is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-iso8601; however: Package python3-iso8601 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-xdist; however: Package python3-pytest-xdist is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-avro{a} python3-biopython{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-coverage{a} python3-distutils{a} python3-execnet{a} python3-idna{a} python3-iniconfig{a} python3-iso8601{a} python3-jsonschema{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyrsistent{a} python3-pysam{a} python3-pytest{a} python3-pytest-cov{a} python3-pytest-xdist{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-setuptools{a} python3-six{a} python3-urllib3{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-h5py python3-json-pointer python3-olefile python3-pygments python3-rfc3987 python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 64.9 MB of archives. After unpacking 218 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 mailcap all 3.70+nmu1 [32.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 mime-support all 3.66 [10.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 15 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 39 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-2 [131 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libfontenc1 amd64 1:1.1.4-1 [24.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-5 [183 kB] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libnghttp2-14 amd64 1.52.0-1 [72.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 libpsl5 amd64 0.21.2-1 [58.7 kB] Get: 67 http://deb.debian.org/debian bookworm/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libcurl3-gnutls amd64 7.88.1-8 [380 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 libhtscodecs2 amd64 1.3.0-4 [87.5 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 libhts3 amd64 1.16+ds-3 [430 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-metadata all 12-4 [6532 B] Get: 83 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 85 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-1+b1 [189 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-5 [316 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.1 [99.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.1 [109 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 98 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 python3-avro all 1.11.1+dfsg-2 [70.5 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 python3-renderpm amd64 3.6.12-1+b1 [79.2 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab-accel amd64 3.6.12-1+b1 [38.6 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 python3-reportlab all 3.6.12-1 [564 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 python3-biopython amd64 1.80+dfsg-4+b1 [1593 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 python3-certifi all 2022.9.24-1 [153 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 python3-coverage amd64 6.5.0+dfsg1-2+b1 [153 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 python3-execnet all 1.9.0-1 [41.5 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 python3-idna all 3.3-1 [39.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 116 http://deb.debian.org/debian bookworm/main amd64 python3-iso8601 all 1.0.2-1 [15.7 kB] Get: 117 http://deb.debian.org/debian bookworm/main amd64 python3-pyrsistent amd64 0.18.1-1+b3 [60.0 kB] Get: 118 http://deb.debian.org/debian bookworm/main amd64 python3-jsonschema all 4.10.3-1 [67.9 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 python3-pysam amd64 0.20.0+ds-3+b1 [1681 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 python3-pbcore all 2.1.2+dfsg-5 [2830 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 python3-pytest all 7.2.1-2 [236 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-cov all 4.0.0-1 [26.1 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 python3-pytest-xdist all 3.1.0-1 [39.6 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 python3-urllib3 all 1.26.12-1 [117 kB] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Fetched 64.9 MB in 3s (23.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_amd64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:amd64 (3.11.2-6) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19938 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_amd64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../5-libreadline8_8.2-1.3_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_amd64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20396 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_amd64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.0.8-1_amd64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../019-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../020-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../021-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../022-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../023-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../025-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../026-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../028-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../029-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../030-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... 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Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.52.0-1) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libfontenc1:amd64 (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... 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Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... Setting up openssl (3.0.8-1) ... Setting up libwebpmux3:amd64 (1.2.4-0.1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:amd64 (1.2.4-0.1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libfreetype6:amd64 (2.12.1+dfsg-4) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libcurl3-gnutls:amd64 (7.88.1-8) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:amd64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-iso8601 (1.0.2-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up python3-avro (1.11.1+dfsg-2) ... Setting up python3-reportlab-accel:amd64 (3.6.12-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-pyrsistent:amd64 (0.18.1-1+b3) ... Setting up python3-execnet (1.9.0-1) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up python3-renderpm:amd64 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-coverage (6.5.0+dfsg1-2+b1) ... Setting up python3-pytest-cov (4.0.0-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up python3-jsonschema (4.10.3-1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pytest-xdist (3.1.0-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Setting up python3-pbcore (2.1.2+dfsg-5) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcommand_2.1.1+git20220616.3f2e6c2-2_source.changes dpkg-buildpackage: info: source package python-pbcommand dpkg-buildpackage: info: source version 2.1.1+git20220616.3f2e6c2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Utkarsh Gupta dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: warning: unknown information field 'Breaks' in input data in general section of control info file dpkg-source: warning: unknown information field 'Provides' in input data in general section of control info file dpkg-source: warning: unknown information field 'Replaces' in input data in general section of control info file debian/rules clean LC_ALL=C.UTF-8 dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-pbcommand-2.1.1+git20220616.3f2e6c2' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running clean removing '/build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pytest_cache pbcommand.egg-info make[1]: Leaving directory '/build/python-pbcommand-2.1.1+git20220616.3f2e6c2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running build running build_py creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand copying pbcommand/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand copying pbcommand/create_bundle_manifest.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand copying pbcommand/validators.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand copying pbcommand/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand copying pbcommand/common_options.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/nunit.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/xunit.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/merge_junit_files.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/core.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/base_utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit copying pbcommand/testkit/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/resolver.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/models.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/job_poller.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/cli.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services copying pbcommand/services/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/report.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/common.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io copying pbcommand/pb_io/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models copying pbcommand/models/report.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models copying pbcommand/models/legacy.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models copying pbcommand/models/common.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models copying pbcommand/models/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine copying pbcommand/engine/runner.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine copying pbcommand/engine/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli copying pbcommand/cli/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli copying pbcommand/cli/core.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli copying pbcommand/cli/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples copying pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples running egg_info creating pbcommand.egg-info writing pbcommand.egg-info/PKG-INFO writing dependency_links to pbcommand.egg-info/dependency_links.txt writing requirements to pbcommand.egg-info/requires.txt writing top-level names to pbcommand.egg-info/top_level.txt writing manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'examples' warning: no files found matching '*.py' under directory 'examples' adding license file 'LICENSES.txt' writing manifest file 'pbcommand.egg-info/SOURCES.txt' copying pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas copying pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2, configfile: pytest.ini plugins: xdist-3.1.0, cov-4.0.0 gw0 I / gw1 I / gw2 I / gw3 I / gw4 I / gw5 I / gw6 I / gw7 I / gw8 I / gw9 I / gw10 I / gw11 I / gw12 I / gw13 I / gw14 I / gw15 I [gw0] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw1] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw2] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw3] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw4] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw5] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw6] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw7] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw8] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw9] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw10] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw11] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw12] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw13] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw14] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw15] linux Python 3.11.2 cwd: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build [gw0] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw1] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw2] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw3] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw4] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw5] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw6] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw7] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw8] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw9] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw10] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw11] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw12] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw13] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw14] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] [gw15] Python 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] gw0 [125] / gw1 [125] / gw2 [125] / gw3 [125] / gw4 [125] / gw5 [125] / gw6 [125] / gw7 [125] / gw8 [125] / gw9 [125] / gw10 [125] / gw11 [125] / gw12 [125] / gw13 [125] / gw14 [125] / gw15 [125] scheduling tests via LoadScopeScheduling tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_sanity_option tests/test_models_common.py::TestLoadFileTypes::test_file_types tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_sanity_option tests/test_models_report.py::TestReportModel::test_from_simple_dict tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_sanity_option [gw5] [ 0%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_sanity_option [gw0] [ 1%] PASSED tests/test_models_common.py::TestLoadFileTypes::test_file_types tests/test_models_common.py::TestLoadFileTypes::test_is_valid [gw0] [ 2%] PASSED tests/test_models_common.py::TestLoadFileTypes::test_is_valid [gw4] [ 3%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_string [gw4] [ 4%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_string tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_float [gw4] [ 4%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_float tests/test_models_report.py::TestMalformedReport::test_bad_01 [gw14] [ 5%] PASSED tests/test_models_report.py::TestMalformedReport::test_bad_01 tests/test_models_common.py::TestAlarm::test_pacbio_alarm [gw2] [ 6%] PASSED tests/test_models_common.py::TestAlarm::test_pacbio_alarm tests/test_models_report_attribute.py::TestAttribute::test_attribute_null_id [gw2] [ 7%] PASSED tests/test_models_report_attribute.py::TestAttribute::test_attribute_null_id tests/test_models_report_attribute.py::TestAttribute::test_attribute_int_id [gw2] [ 8%] PASSED tests/test_models_report_attribute.py::TestAttribute::test_attribute_int_id tests/test_models_report_attribute.py::TestAttribute::test_to_dict [gw2] [ 8%] PASSED tests/test_models_report_attribute.py::TestAttribute::test_to_dict tests/test_models_report_attribute.py::TestAttribute::test_eq [gw2] [ 9%] PASSED tests/test_models_report_attribute.py::TestAttribute::test_eq tests/test_models_report_plotgroup.py::TestPlotGroup::test_init tests/test_models_common.py::TestDataStore::test_datastore_file [gw1] [ 10%] PASSED tests/test_models_common.py::TestDataStore::test_datastore_file tests/test_models_common.py::TestDataStore::test_datastore_paths [gw1] [ 11%] PASSED tests/test_models_common.py::TestDataStore::test_datastore_paths tests/test_models_report.py::TestReportSpec::test_report_validation [gw7] [ 12%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_bad_value_int [gw7] [ 12%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_bad_value_int [gw13] [ 13%] PASSED tests/test_models_report.py::TestReportModel::test_from_simple_dict tests/test_models_report.py::TestReportModel::test_report_null_ns [gw13] [ 14%] PASSED tests/test_models_report.py::TestReportModel::test_report_null_ns tests/test_models_report.py::TestReportModel::test_report_empty_ns [gw13] [ 15%] PASSED tests/test_models_report.py::TestReportModel::test_report_empty_ns tests/test_models_report.py::TestReportModel::test_duplicate_ids [gw13] [ 16%] PASSED tests/test_models_report.py::TestReportModel::test_duplicate_ids tests/test_models_report.py::TestReportModel::test_illegal_id [gw13] [ 16%] PASSED tests/test_models_report.py::TestReportModel::test_illegal_id tests/test_models_report.py::TestReportModel::test_empty_id [gw13] [ 17%] PASSED tests/test_models_report.py::TestReportModel::test_empty_id tests/test_models_report.py::TestReportModel::test_uppercase_id [gw13] [ 18%] PASSED tests/test_models_report.py::TestReportModel::test_uppercase_id [gw9] [ 19%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_sanity_choice_option [gw9] [ 20%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_sanity_choice_option [gw1] [ 20%] PASSED tests/test_models_report.py::TestReportSpec::test_report_validation tests/test_models_report.py::TestReportSpec::test_format_metric tests/test_models_report.py::TestReportSchemaVersion100::test_sanity [gw15] [ 21%] PASSED tests/test_models_report.py::TestReportSchemaVersion100::test_sanity tests/test_models_report_table.py::TestEmptyTable::test_str [gw15] [ 22%] PASSED tests/test_models_report_table.py::TestEmptyTable::test_str tests/test_models_report_table.py::TestEmptyTable::test_columns [gw15] [ 23%] PASSED tests/test_models_report_table.py::TestEmptyTable::test_columns tests/test_models_report_table.py::TestEmptyTable::test_column_values [gw15] [ 24%] PASSED tests/test_models_report_table.py::TestEmptyTable::test_column_values [gw14] [ 24%] PASSED tests/test_models_report_plotgroup.py::TestPlotGroup::test_init tests/test_models_report_plotgroup.py::TestPlotGroup::test_plotgroup_null_id [gw14] [ 25%] PASSED tests/test_models_report_plotgroup.py::TestPlotGroup::test_plotgroup_null_id tests/test_models_report_plotgroup.py::TestPlotGroup::test_plotgroup_add_duplicate_plot tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_sanity_option [gw8] [ 26%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_sanity_choice_option [gw8] [ 27%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_sanity_choice_option [gw1] [ 28%] PASSED tests/test_models_report.py::TestReportSpec::test_format_metric tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_sanity_option [gw11] [ 28%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_sanity_choice_option [gw11] [ 29%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_sanity_choice_option tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_bad_invalid_choice [gw11] [ 30%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_bad_invalid_choice tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_coerce_float_choices [gw11] [ 31%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_coerce_float_choices tests/test_models_common_pacbio_options.py::TestPacBioBasicOptionTest::test_sanity_option [gw3] [ 32%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBasicOptionTest::test_sanity_option tests/test_models_report_column.py::TestColumn::test_column [gw3] [ 32%] PASSED tests/test_models_report_column.py::TestColumn::test_column tests/test_models_legacy.py::TestLegacyModels::test_load_pipeline_from_json [gw12] [ 33%] PASSED tests/test_models_legacy.py::TestLegacyModels::test_load_pipeline_from_json tests/test_models_report_plot.py::TestPlot::test_plot_null_id [gw12] [ 34%] PASSED tests/test_models_report_plot.py::TestPlot::test_plot_null_id tests/test_models_report_plot.py::TestPlot::test_plot_null_image [gw12] [ 35%] PASSED tests/test_models_report_plot.py::TestPlot::test_plot_null_image tests/test_models_report_plot.py::TestPlot::test_to_dict [gw12] [ 36%] PASSED tests/test_models_report_plot.py::TestPlot::test_to_dict tests/test_models_report_plot.py::TestPlot::test_init_with_thumbnail [gw12] [ 36%] PASSED tests/test_models_report_plot.py::TestPlot::test_init_with_thumbnail tests/test_models_report.py::TestReportModel::test_to_dict [gw13] [ 37%] PASSED tests/test_models_report.py::TestReportModel::test_to_dict tests/test_models_report.py::TestReportModel::test_version_and_changelist [gw13] [ 38%] PASSED tests/test_models_report.py::TestReportModel::test_version_and_changelist tests/test_models_report.py::TestReportModel::test_load_from_file tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_int [gw5] [ 39%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_int tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_float [gw5] [ 40%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_float [gw10] [ 40%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_sanity_choice_option [gw10] [ 41%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_sanity_choice_option [gw13] [ 42%] PASSED tests/test_models_report.py::TestReportModel::test_load_from_file tests/test_models_report.py::TestReportModel::test_to_dict_multi [gw6] [ 43%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_sanity_option tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_coerced_value_int [gw6] [ 44%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_coerced_value_int [gw14] [ 44%] PASSED tests/test_models_report_plotgroup.py::TestPlotGroup::test_plotgroup_add_duplicate_plot tests/test_models_report_plotgroup.py::TestPlotGroup::test_to_dict [gw14] [ 45%] PASSED tests/test_models_report_plotgroup.py::TestPlotGroup::test_to_dict [gw13] [ 46%] PASSED tests/test_models_report.py::TestReportModel::test_to_dict_multi tests/test_models_report.py::TestReportModel::test_get_attribute_by_id tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_boolean [gw6] [ 47%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_boolean tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_string [gw13] [ 48%] PASSED tests/test_models_report.py::TestReportModel::test_get_attribute_by_id tests/test_models_report.py::TestReportModel::test_get_attribute_by_id_with_bad_id [gw13] [ 48%] PASSED tests/test_models_report.py::TestReportModel::test_get_attribute_by_id_with_bad_id tests/test_models_report.py::TestReportModel::test_get_table_by_id [gw13] [ 49%] PASSED tests/test_models_report.py::TestReportModel::test_get_table_by_id tests/test_models_report.py::TestReportModel::test_get_table_by_id_with_bad_id [gw13] [ 50%] PASSED tests/test_models_report.py::TestReportModel::test_get_table_by_id_with_bad_id tests/test_models_report.py::TestReportModel::test_get_column_by_id [gw13] [ 51%] PASSED tests/test_models_report.py::TestReportModel::test_get_column_by_id [gw6] [ 52%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_string tests/test_models_report.py::TestReportModel::test_get_column_by_id_with_bad_id tests/test_models_report.py::TestRepotSchemaVersion100WithPlots::test_sanity [gw0] [ 52%] PASSED tests/test_models_report.py::TestRepotSchemaVersion100WithPlots::test_sanity tests/test_models_report_table.py::TestBasicTable::test_str [gw0] [ 53%] PASSED tests/test_models_report_table.py::TestBasicTable::test_str tests/test_models_report_table.py::TestBasicTable::test_columns [gw0] [ 54%] PASSED tests/test_models_report_table.py::TestBasicTable::test_columns tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_boolean [gw4] [ 55%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntOptionTest::test_bad_value_boolean tests/test_models_report_table.py::TestTable::test_table [gw4] [ 56%] PASSED tests/test_models_report_table.py::TestTable::test_table tests/test_models_report_table.py::TestTable::test_add_column [gw4] [ 56%] PASSED tests/test_models_report_table.py::TestTable::test_add_column tests/test_models_report_table.py::TestTable::test_append_data [gw4] [ 57%] PASSED tests/test_models_report_table.py::TestTable::test_append_data tests/test_models_report_table.py::TestBasicTable::test_column_values [gw0] [ 58%] PASSED tests/test_models_report_table.py::TestBasicTable::test_column_values tests/test_models_report_table.py::TestBasicTable::test_to_dict [gw13] [ 59%] PASSED tests/test_models_report.py::TestReportModel::test_get_column_by_id_with_bad_id tests/test_models_report.py::TestReportModel::test_get_plotgroup_by_id [gw13] [ 60%] PASSED tests/test_models_report.py::TestReportModel::test_get_plotgroup_by_id tests/test_models_report.py::TestReportModel::test_get_plotgroup_by_id_with_bad_id [gw13] [ 60%] PASSED tests/test_models_report.py::TestReportModel::test_get_plotgroup_by_id_with_bad_id tests/test_models_report.py::TestReportModel::test_get_plot_by_id [gw13] [ 61%] PASSED tests/test_models_report.py::TestReportModel::test_get_plot_by_id tests/test_models_report.py::TestReportModel::test_get_plot_by_id_with_bad_id tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_bad_invalid_choice [gw8] [ 62%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_bad_invalid_choice tests/test_utils.py::TestLogging::test_get_parsed_args_log_level [gw0] [ 63%] PASSED tests/test_models_report_table.py::TestBasicTable::test_to_dict tests/test_models_report_plot.py::TestPlot::test_plotly_plot [gw12] [ 64%] PASSED tests/test_models_report_plot.py::TestPlot::test_plotly_plot tests/test_models_report_column.py::TestColumn::test_repr [gw3] [ 64%] PASSED tests/test_models_report_column.py::TestColumn::test_repr tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_bad_value_float [gw7] [ 65%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioStringOptionTest::test_bad_value_float tests/test_pb_io_report.py::TestSerializationAdapterReport::test_id [gw7] [ 66%] PASSED tests/test_pb_io_report.py::TestSerializationAdapterReport::test_id tests/test_pb_io_report.py::TestSerializationAdapterReport::test_attributes [gw7] [ 67%] PASSED tests/test_pb_io_report.py::TestSerializationAdapterReport::test_attributes tests/test_pb_io_report.py::TestSerializationAdapterReport::test_plotgroups [gw7] [ 68%] PASSED tests/test_pb_io_report.py::TestSerializationAdapterReport::test_plotgroups tests/test_models_report_attribute.py::TestAttribute::test_repr [gw2] [ 68%] PASSED tests/test_models_report_attribute.py::TestAttribute::test_repr tests/test_pb_io_common.py::TestWriteChunk::test_write_chunks [gw2] [ 69%] PASSED tests/test_pb_io_common.py::TestWriteChunk::test_write_chunks tests/test_pb_io_report.py::TestSerializationOverviewReport::test_id [gw2] [ 70%] PASSED tests/test_pb_io_report.py::TestSerializationOverviewReport::test_id tests/test_pb_io_report.py::TestSerializationOverviewReport::test_uuid [gw2] [ 71%] PASSED tests/test_pb_io_report.py::TestSerializationOverviewReport::test_uuid tests/test_pb_io_report.py::TestSerializationOverviewReport::test_title [gw2] [ 72%] PASSED tests/test_pb_io_report.py::TestSerializationOverviewReport::test_title tests/test_models_report_table.py::TestEmptyTable::test_to_dict [gw15] [ 72%] PASSED tests/test_models_report_table.py::TestEmptyTable::test_to_dict tests/test_utils.py::TestCompose::test_simple [gw15] [ 73%] PASSED tests/test_utils.py::TestCompose::test_simple tests/test_utils.py::TestCompose::test_no_args_list [gw15] [ 74%] PASSED tests/test_utils.py::TestCompose::test_no_args_list tests/test_utils.py::TestCompose::test_empty_list [gw15] [ 75%] PASSED tests/test_utils.py::TestCompose::test_empty_list [gw8] [ 76%] PASSED tests/test_utils.py::TestLogging::test_get_parsed_args_log_level [gw13] [ 76%] PASSED tests/test_models_report.py::TestReportModel::test_get_plot_by_id_with_bad_id tests/test_models_report.py::TestReportModel::test_merge [gw13] [ 77%] PASSED tests/test_models_report.py::TestReportModel::test_merge tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_bad_invalid_choice [gw9] [ 78%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioChoiceStringOptionTest::test_bad_invalid_choice tests/test_testkit.py::TestBaseUtils::test_pb_requirements_decorator [gw9] [ 79%] PASSED tests/test_testkit.py::TestBaseUtils::test_pb_requirements_decorator tests/test_testkit_xunit.py::TestXunitOutput::test_convert_to_xunit [gw9] [ 80%] PASSED tests/test_testkit_xunit.py::TestXunitOutput::test_convert_to_xunit tests/test_testkit_xunit.py::TestXunitOutput::test_xunit_file_to_jenkins [gw9] [ 80%] PASSED tests/test_testkit_xunit.py::TestXunitOutput::test_xunit_file_to_jenkins tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files [gw9] [ 81%] PASSED tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files tests/test_models_report.py::TestReportSpec::test_apply_view [gw1] [ 82%] PASSED tests/test_models_report.py::TestReportSpec::test_apply_view tests/test_utils.py::TestSingleton::test_basic [gw1] [ 83%] PASSED tests/test_utils.py::TestSingleton::test_basic tests/test_validators.py::TestValidators::test_validate_file [gw1] [ 84%] PASSED tests/test_validators.py::TestValidators::test_validate_file tests/test_validators.py::TestValidators::test_validate_file_fails tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_bad_choices [gw11] [ 84%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatChoiceOptionTest::test_bad_choices tests/test_models_report_table.py::TestBasicTable::test_to_csv tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_string [gw5] [ 85%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioBooleanOptionTest::test_bad_value_string tests/test_models_report.py::TestReportModel::test_merge_tables [gw13] [ 86%] PASSED tests/test_models_report.py::TestReportModel::test_merge_tables [gw1] [ 87%] PASSED tests/test_validators.py::TestValidators::test_validate_file_fails tests/test_validators.py::TestValidators::test_validate_nonempty_file [gw1] [ 88%] PASSED tests/test_validators.py::TestValidators::test_validate_nonempty_file tests/test_validators.py::TestValidators::test_validate_nonempty_file_fails tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_bad_invalid_choice [gw10] [ 88%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioIntChoiceOptionTest::test_bad_invalid_choice tests/test_models_report_table.py::TestTable::test_add_data_by_column_id [gw4] [ 89%] PASSED tests/test_models_report_table.py::TestTable::test_add_data_by_column_id [gw1] [ 90%] PASSED tests/test_validators.py::TestValidators::test_validate_nonempty_file_fails tests/test_validators.py::TestValidators::test_validate_output_dir [gw1] [ 91%] PASSED tests/test_validators.py::TestValidators::test_validate_output_dir tests/test_validators.py::TestValidators::test_validate_report_file [gw1] [ 92%] PASSED tests/test_validators.py::TestValidators::test_validate_report_file tests/test_validators.py::TestValidators::test_validate_report [gw0] [ 92%] PASSED tests/test_models_report_table.py::TestBasicTable::test_to_csv [gw1] [ 93%] PASSED tests/test_validators.py::TestValidators::test_validate_report tests/test_models_report_plotgroup.py::TestPlotGroup::test_adding_incorrect_type [gw14] [ 94%] PASSED tests/test_models_report_plotgroup.py::TestPlotGroup::test_adding_incorrect_type tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_float_tuple [gw6] [ 95%] PASSED tests/test_models_common_pacbio_options.py::TestPacBioFloatOptionTest::test_bad_value_float_tuple tests/test_utils.py::TestUtils::test_get_dataset_metadata [gw8] [ 96%] SKIPPED tests/test_utils.py::TestUtils::test_get_dataset_metadata tests/test_pb_io_report.py::TestSerializationAdapterReport::test_plots [gw7] [ 96%] PASSED tests/test_pb_io_report.py::TestSerializationAdapterReport::test_plots tests/test_utils.py::TestCompose::test_partial [gw15] [ 97%] PASSED tests/test_utils.py::TestCompose::test_partial tests/test_pb_io_report.py::TestSerializationOverviewReport::test_attributes [gw2] [ 98%] PASSED tests/test_pb_io_report.py::TestSerializationOverviewReport::test_attributes tests/test_validators.py::TestValidators::test_validate_report_fails tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files_cmdline [gw1] [ 99%] PASSED tests/test_validators.py::TestValidators::test_validate_report_fails [gw9] [100%] PASSED tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files_cmdline - generated xml file: /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/nosetests.xml - ---------- coverage: platform linux, python 3.11.2-final-0 ----------- Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= 3.53s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files_cmdline 0.04s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_validators.py::TestValidators::test_validate_file_fails 0.02s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_utils.py::TestLogging::test_get_parsed_args_log_level 0.02s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_testkit_xunit.py::TestXunitOutput::test_merge_junit_files 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_report.py::TestMalformedReport::test_bad_01 0.01s teardown .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_common.py::TestDataStore::test_datastore_file 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_validators.py::TestValidators::test_validate_output_dir 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_common_pacbio_options.py::TestPacBioBasicChoiceTest::test_sanity_option 0.01s teardown .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_report_table.py::TestBasicTable::test_to_csv 0.01s teardown .pybuild/cpython3_3.11_pbcommand/build/tests/test_validators.py::TestValidators::test_validate_file 0.01s setup .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_report.py::TestReportSpec::test_report_validation 0.01s teardown .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_report.py::TestMalformedReport::test_bad_01 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_validators.py::TestValidators::test_validate_nonempty_file_fails 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_testkit_xunit.py::TestXunitOutput::test_xunit_file_to_jenkins 0.01s teardown .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_legacy.py::TestLegacyModels::test_load_pipeline_from_json 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_testkit_xunit.py::TestXunitOutput::test_convert_to_xunit 0.01s call .pybuild/cpython3_3.11_pbcommand/build/tests/test_models_report.py::TestReportModel::test_to_dict (3 durations < 0.005s hidden. Use -vv to show these durations.) ======================= 124 passed, 1 skipped in 24.44s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pbcommand/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand /usr/lib/python3/dist-packages/setuptools/dist.py:775: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'test_requires' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pbcommand.egg-info/PKG-INFO writing dependency_links to pbcommand.egg-info/dependency_links.txt writing requirements to pbcommand.egg-info/requires.txt writing top-level names to pbcommand.egg-info/top_level.txt reading manifest file 'pbcommand.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'examples' warning: no files found matching '*.py' under directory 'examples' adding license file 'LICENSES.txt' writing manifest file 'pbcommand.egg-info/SOURCES.txt' running install_lib creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11 creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/nosetests.xml -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/coverage.xml -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/.coverage -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/__pycache__/validators.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/__pycache__/utils.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/__pycache__/common_options.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__pycache__ creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/__pycache__/core.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/__pycache__ creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples/template_simple.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/examples/template_subparser_simple.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/core.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/cli/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine/__pycache__/runner.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/engine/runner.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/__pycache__/legacy.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/__pycache__/report.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/__pycache__/common.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/common.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/legacy.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/models/report.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/__pycache__/common.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/__pycache__/report.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/common.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/pb_io/report.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/report_spec.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/pipeline_template_view_rules.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/pipeline_presets_simple.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/pipeline_presets.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/pbreport.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/datastore_view_rules.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/datastore.avsc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/schemas/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/_service_access_layer.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/cli.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/job_poller.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/models.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/services/resolver.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit creating /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__pycache__/merge_junit_files.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__pycache__/xunit.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__pycache__/base_utils.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__pycache__/core.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__pycache__/__init__.cpython-311.pyc -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__pycache__ copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/base_utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/core.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/merge_junit_files.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/xunit.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/testkit/nunit.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/common_options.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/utils.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/validators.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/create_bundle_manifest.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand copying /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/.pybuild/cpython3_3.11_pbcommand/build/pbcommand/__init__.py -> /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples/template_simple.py to template_simple.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/examples/template_subparser_simple.py to template_subparser_simple.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/core.py to core.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/cli/utils.py to utils.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/engine/runner.py to runner.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/common.py to common.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/legacy.py to legacy.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/models/report.py to report.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/common.py to common.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/pb_io/report.py to report.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/schemas/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/_service_access_layer.py to _service_access_layer.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/cli.py to cli.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/job_poller.py to job_poller.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/models.py to models.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/utils.py to utils.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/services/resolver.py to resolver.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/base_utils.py to base_utils.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/core.py to core.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/merge_junit_files.py to merge_junit_files.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/xunit.py to xunit.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/testkit/nunit.py to nunit.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/common_options.py to common_options.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/utils.py to utils.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/validators.py to validators.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/create_bundle_manifest.py to create_bundle_manifest.cpython-311.pyc byte-compiling /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand/__init__.py to __init__.cpython-311.pyc running install_egg_info Copying pbcommand.egg-info to /build/python-pbcommand-2.1.1+git20220616.3f2e6c2/debian/python3-pbcommand/usr/lib/python3.11/dist-packages/pbcommand-2.4.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/python-pbcommand-2.1.1+git20220616.3f2e6c2' dh_install find debian \( -name .coverage -o -name coverage.xml -o -name nosetests.xml \) -delete make[1]: Leaving directory '/build/python-pbcommand-2.1.1+git20220616.3f2e6c2' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides avro_python3. Please add package that provides it to Build-Depends or add "avro_python3 python3-avro-python3" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: unknown information field 'Breaks' in input data in general section of control info file dpkg-gencontrol: warning: unknown information field 'Provides' in input data in general section of control info file dpkg-gencontrol: warning: unknown information field 'Replaces' in input data in general section of control info file dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pbcommand' in '../python3-pbcommand_2.1.1+git20220616.3f2e6c2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.changes dpkg-genchanges: warning: unknown information field 'Breaks' in input data in general section of control info file dpkg-genchanges: warning: unknown information field 'Provides' in input data in general section of control info file dpkg-genchanges: warning: unknown information field 'Replaces' in input data in general section of control info file dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: warning: unknown information field 'Breaks' in input data in general section of control info file dpkg-source: warning: unknown information field 'Provides' in input data in general section of control info file dpkg-source: warning: unknown information field 'Replaces' in input data in general section of control info file dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: warning: unknown information field 'Breaks' in input data in general section of control info file dpkg-genchanges: warning: unknown information field 'Provides' in input data in general section of control info file dpkg-genchanges: warning: unknown information field 'Replaces' in input data in general section of control info file dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60181 and its subdirectories I: Current time: Sat May 25 15:05:25 -12 2024 I: pbuilder-time-stamp: 1716692725 Sun Apr 23 20:42:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun Apr 23 20:42:23 UTC 2023 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun Apr 23 20:44:25 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun Apr 23 20:44:26 UTC 2023 I: python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.changes: Format: 1.8 Date: Fri, 26 Aug 2022 13:40:40 +0530 Source: python-pbcommand Binary: python3-pbcommand Architecture: all Version: 2.1.1+git20220616.3f2e6c2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Utkarsh Gupta Description: python3-pbcommand - common command-line interface for Pacific Biosciences analysis mo Changes: python-pbcommand (2.1.1+git20220616.3f2e6c2-2) unstable; urgency=medium . * Team upload. * Add python3-avro to Depends to fix autopkgtest. Checksums-Sha1: 3fc6446152bc2846731169e3c3ef55e6d590a5c6 8355 python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo d178020f858595ae364139e04b9eebf38bb4db8d 90364 python3-pbcommand_2.1.1+git20220616.3f2e6c2-2_all.deb Checksums-Sha256: 7ea703f98d81a814da9559f0c4558213aa3c3b9167e547b454861cc71e1c9b6a 8355 python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo 1f02fefa151be68bb514748e32876959b1c8d35355ebf394d2775a44a9c5ee3e 90364 python3-pbcommand_2.1.1+git20220616.3f2e6c2-2_all.deb Files: 44a73dc46bc27b30f1d88ea342696dae 8355 python optional python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo 346a1681535da3d02297f47b71534517 90364 python optional python3-pbcommand_2.1.1+git20220616.3f2e6c2-2_all.deb Sun Apr 23 20:44:28 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/python-pbcommand_2.1.1+git20220616.3f2e6c2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/python-pbcommand_2.1.1+git20220616.3f2e6c2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/python-pbcommand_2.1.1+git20220616.3f2e6c2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/b1/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3dXGeO8s/b2/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.632s) 0.632s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.113s) 0.113s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Apr 23 20:47:11 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 23 20:47:11 UTC 2023 I: python-pbcommand from bookworm built successfully and reproducibly on amd64. Sun Apr 23 20:47:19 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 23 20:47:19 UTC 2023 I: Submitting 12K b1/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo.asc Sun Apr 23 20:47:30 UTC 2023 I: Submitting 12K b2/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo.asc Sun Apr 23 20:47:37 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 23 20:47:37 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 23 20:47:37 UTC 2023 I: Removing signed python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo.asc files: removed './b1/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo.asc' removed './b2/python-pbcommand_2.1.1+git20220616.3f2e6c2-2_amd64.buildinfo.asc'