Sat Apr 15 02:29:19 UTC 2023 I: starting to build andi/bookworm/arm64 on jenkins on '2023-04-15 02:29' Sat Apr 15 02:29:19 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/4025/console.log Sat Apr 15 02:29:19 UTC 2023 I: Downloading source for bookworm/andi=0.14-2 --2023-04-15 02:29:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/andi/andi_0.14-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2021 (2.0K) [text/prs.lines.tag] Saving to: ‘andi_0.14-2.dsc’ 0K . 100% 149M=0s 2023-04-15 02:29:19 (149 MB/s) - ‘andi_0.14-2.dsc’ saved [2021/2021] Sat Apr 15 02:29:19 UTC 2023 I: andi_0.14-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.14-2 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper Package-List: andi deb science optional arch=any Checksums-Sha1: e0db2f63dffadb9c39083d4ee3baf27d9185a51b 539526 andi_0.14.orig.tar.gz aa155ae78ad11b289fa5bdc3f70e85ea19ea07e3 11516 andi_0.14-2.debian.tar.xz Checksums-Sha256: 2c9e11524f38e74fe3f981e6acd9527c1a1ca30994a30c5e86808ba5165a25b7 539526 andi_0.14.orig.tar.gz 91ee849c09f57cfd8e11da30adc3959482294e20b82d0aebdf795ec4935305ab 11516 andi_0.14-2.debian.tar.xz Files: 8e42393fa97f726880480f4d3cc9542e 539526 andi_0.14.orig.tar.gz 6ca6e7a9533af318bfb7e74210b94713 11516 andi_0.14-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmHNvVMSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx1kwP/Avq1wBXrXn0+2nlt727gTOs8KyGZVXT N9m4L6YWEXauvfgvNXgyBpObKoocoyh1AUoO6JkDnnN3uEoRUhCNI5y3f2N6v9lP GVibvSfYyywq9CG+P73qVE46vhLACyVc1vGDma+2Qr4FRnVmHUiAgyRtZe6noDTM E9aD2nNDrJu4sQclKNSoFsQ40ZhzGVRlpuHn18z7yQQy6J5EOC/yLyGdTvk/yg2H v2T2JV2KO4cykPEmUiYgJ6UlJq+1JpacePOyDyzcL5oK5RCK+DPQHZ2E+vaATWxm 2XnQhw05Pb62kiW0kFHmAiqt1p+lZs1ebZ6ky6oMtuINhj8JJl1UZABtBsXOdJxW 2MqqSbQk5UIXOLyNAC3m2I2UAcSurpBqMO+ce98DiqWoqu6as70fEHfleLwEF45Q ZJpO+wqmelUZCjeEyoP9YoSTiQmir9oOLR0BJHyAnYsBzfj3bHKPpgjxviFwlAY4 JeL4MIREZoIU2NXeGz2/2c227SgYLCwm+hEpEK/076ddfIITJg4wwbhW85SliLbb YVDVB9vxFkeD26cG1rOEGJb0kpNzGf5cYP9SJCbbdu7AP92sggG0FMQglSOV9YXU vPg2R9NlhBlpL/8WhODwrjNVaCsvEL3yapW6f+vF8FDFoPlTkuRvWJFS2uhMeIUh mfUG5T/2X4WN =6I9H -----END PGP SIGNATURE----- Sat Apr 15 02:29:19 UTC 2023 I: Checking whether the package is not for us Sat Apr 15 02:29:19 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Sat Apr 15 02:29:19 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Sat Apr 15 02:31:58 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 14 14:29:23 -12 2023 I: pbuilder-time-stamp: 1681525763 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-2.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 30 02:08:19 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./andi_0.14-2.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8338/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8338' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/pbuilderrc_jF7b --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/b1 --logfile b1/build.log andi_0.14-2.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 14 00:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8338/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} libselinux1-dev{a} libsepol-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1+b1 [26.3 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1+b1 [9296 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1+b1 [26.3 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 32 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 uuid-dev arm64 2.38.1-5+b1 [40.5 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libblkid-dev arm64 2.38.1-5+b1 [183 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libdivsufsort3 arm64 2.0.1-5 [38.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libdivsufsort-dev arm64 2.0.1-5 [19.1 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 libffi-dev arm64 3.4.4-1 [56.0 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-data all 2.74.6-1 [1208 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-bin arm64 2.74.6-1 [106 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-dev-bin arm64 2.74.6-1 [149 kB] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libsepol-dev arm64 3.4-2 [343 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 libpcre2-16-0 arm64 10.42-1 [216 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libpcre2-32-0 arm64 10.42-1 [207 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 libpcre2-posix3 arm64 10.42-1 [55.5 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libpcre2-dev arm64 10.42-1 [664 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libselinux1-dev arm64 3.4-1+b5 [159 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 libmount-dev arm64 2.38.1-5+b1 [22.5 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-dev arm64 2.74.6-1 [1613 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 libgslcblas0 arm64 2.7.1+dfsg-3+b1 [82.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 libgsl27 arm64 2.7.1+dfsg-3+b1 [824 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libgsl-dev arm64 2.7.1+dfsg-3+b1 [1035 kB] Fetched 33.3 MB in 1s (29.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_arm64.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1+b1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20366 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_arm64.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... 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Unpacking libgsl-dev (2.7.1+dfsg-3+b1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libgslcblas0:arm64 (2.7.1+dfsg-3+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.74.6-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up libgsl27:arm64 (2.7.1+dfsg-3+b1) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libffi-dev:arm64 (3.4.4-1) ... Setting up libpcre2-16-0:arm64 (10.42-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-1) ... Setting up libglib2.0-data (2.74.6-1) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up uuid-dev:arm64 (2.38.1-5+b1) ... Setting up autopoint (0.21-12) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-2_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/andi-0.14' dh_auto_build make -j8 make[1]: Entering directory '/build/andi-0.14' Making all in . make[2]: Entering directory '/build/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/andi-0.14' Making all in libs make[2]: Entering directory '/build/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/andi-0.14/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/andi-0.14/src' make all-am make[3]: Entering directory '/build/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/andi-0.14/src' make[2]: Leaving directory '/build/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic | gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -Wno-missing-field-initializers -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/andi-0.14/test' make[1]: Leaving directory '/build/andi-0.14' dh_auto_test make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1 make[1]: Entering directory '/build/andi-0.14' Making check in . make[2]: Entering directory '/build/andi-0.14' make check-TESTS make[3]: Entering directory '/build/andi-0.14' make[4]: Entering directory '/build/andi-0.14' PASS: test/test_process PASS: test/test_seq PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/andi-0.14' make[3]: Leaving directory '/build/andi-0.14' make[2]: Leaving directory '/build/andi-0.14' Making check in libs make[2]: Entering directory '/build/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/andi-0.14/src' make[2]: Leaving directory '/build/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/andi-0.14/test' make[2]: Leaving directory '/build/andi-0.14/test' make[1]: Leaving directory '/build/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j8 install DESTDIR=/build/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/andi-0.14' Making install in . make[2]: Entering directory '/build/andi-0.14' make[3]: Entering directory '/build/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/andi-0.14' make[2]: Leaving directory '/build/andi-0.14' Making install in libs make[2]: Entering directory '/build/andi-0.14/libs' make[3]: Entering directory '/build/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.14/libs' make[2]: Leaving directory '/build/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/andi-0.14/opt' make[3]: Entering directory '/build/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.14/opt' make[2]: Leaving directory '/build/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/andi-0.14/src' make[3]: Entering directory '/build/andi-0.14/src' /usr/bin/mkdir -p '/build/andi-0.14/debian/andi/usr/bin' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/install -c andi '/build/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/andi-0.14/src' make[2]: Leaving directory '/build/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/andi-0.14/docs' make[3]: Entering directory '/build/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/andi-0.14/docs' make[2]: Leaving directory '/build/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/andi-0.14/test' make[3]: Entering directory '/build/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/andi-0.14/test' make[2]: Leaving directory '/build/andi-0.14/test' make[1]: Leaving directory '/build/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-2_arm64.deb'. dpkg-deb: building package 'andi' in '../andi_0.14-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-2_arm64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8338 and its subdirectories I: Current time: Fri Apr 14 14:31:57 -12 2023 I: pbuilder-time-stamp: 1681525917 Sat Apr 15 02:31:59 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Sat Apr 15 02:31:59 UTC 2023 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Sat Apr 15 02:34:55 UTC 2023 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Sat Apr 15 02:34:56 UTC 2023 I: andi_0.14-2_arm64.changes: Format: 1.8 Date: Thu, 30 Dec 2021 19:31:14 +0530 Source: andi Binary: andi andi-dbgsym Architecture: arm64 Version: 0.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: andi - Efficient Estimation of Evolutionary Distances Changes: andi (0.14-2) unstable; urgency=medium . * Team Upload. * d/t/lowhomo.sh: Remove bashism, fix script * Add patch to remove comparison of different signed types in tests Checksums-Sha1: 83cb972dd9dcf3d2e2cd2f01022c4b6451cd5908 51684 andi-dbgsym_0.14-2_arm64.deb 456ba3c8c0331296409ea33c7ac27cb06988ad67 6279 andi_0.14-2_arm64.buildinfo 690a99920492ffd4e46caf3ef6cc56c18b4cd709 469604 andi_0.14-2_arm64.deb Checksums-Sha256: d906c60d06c2d8cb95f96606e2ae1e721b84b51c33421e99e32bf3249d2daba6 51684 andi-dbgsym_0.14-2_arm64.deb 6110b3de8be7264517c2991a903773a662a665b17dc937e43e54bb0c7e6113db 6279 andi_0.14-2_arm64.buildinfo 48d24767299bb0e51cb2b14e691e2a3371086233bb9e80b91672ff34308d94a2 469604 andi_0.14-2_arm64.deb Files: 6612b90cf7751f602c49f9fb87c696a6 51684 debug optional andi-dbgsym_0.14-2_arm64.deb 498cd02351cc8f04329f7e7a53816e96 6279 science optional andi_0.14-2_arm64.buildinfo b1cf47d3033794227eceed3b6f13f6c3 469604 science optional andi_0.14-2_arm64.deb Sat Apr 15 02:34:58 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/andi_0.14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/andi_0.14-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/andi_0.14-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/b1/andi_0.14-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FccAATly/b2/andi_0.14-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.480s) 0.480s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat Apr 15 02:35:00 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 15 02:35:00 UTC 2023 I: andi from bookworm built successfully and reproducibly on arm64. Sat Apr 15 02:35:02 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 15 02:35:02 UTC 2023 I: Submitting 8.0K b1/andi_0.14-2_arm64.buildinfo.asc Sat Apr 15 02:35:04 UTC 2023 I: Submitting 8.0K b2/andi_0.14-2_arm64.buildinfo.asc Sat Apr 15 02:35:04 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 15 02:35:04 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 15 02:35:04 UTC 2023 I: Removing signed andi_0.14-2_arm64.buildinfo.asc files: removed './b1/andi_0.14-2_arm64.buildinfo.asc' removed './b2/andi_0.14-2_arm64.buildinfo.asc'