Thu May 16 00:30:43 UTC 2024 I: starting to build barrnap/bookworm/arm64 on jenkins on '2024-05-16 00:30' Thu May 16 00:30:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/41364/console.log Thu May 16 00:30:43 UTC 2024 I: Downloading source for bookworm/barrnap=0.9+dfsg-3 --2024-05-16 00:30:43-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/barrnap/barrnap_0.9%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2021 (2.0K) [text/prs.lines.tag] Saving to: ‘barrnap_0.9+dfsg-3.dsc’ 0K . 100% 192M=0s 2024-05-16 00:30:43 (192 MB/s) - ‘barrnap_0.9+dfsg-3.dsc’ saved [2021/2021] Thu May 16 00:30:43 UTC 2024 I: barrnap_0.9+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools Package-List: barrnap deb science optional arch=all Checksums-Sha1: c90352d95316d96f016540d1540ec198ecf3beb2 5783936 barrnap_0.9+dfsg.orig.tar.xz 8f7f317748e31b2c4816bba5428a8cad0a9d3109 5976 barrnap_0.9+dfsg-3.debian.tar.xz Checksums-Sha256: b780182b0154cf44915279bb57c1207b9b0aeb24e779fcd6de1a2b6779e89cc8 5783936 barrnap_0.9+dfsg.orig.tar.xz 6cf24c76178f29c538054c06fe517d1a5ff99865fded19c7eb5117f64dcd6848 5976 barrnap_0.9+dfsg-3.debian.tar.xz Files: 944eaecec9c2fe9bdf344f6f33071ea6 5783936 barrnap_0.9+dfsg.orig.tar.xz 9211e2512af96f54c4f0ef8f34d55241 5976 barrnap_0.9+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPJR1ARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF4/hAAjYLMEAdPykpbKvpws7XYuAjVEDV4WfsY dNK6lYnxvdVJ/bZQmH1XKi2K3bSjGlTVcE+Rm2lCxEL4XB+28WHtmzR/4Nk+R2zA PDBHkCsXRuQIn3q2HSzfq46NJHtIZCRK9kLF8pc8nONMC8Nc+pdpnW2j3fgujHEn KQC9QAta2MSR8jG0rIllWUocwYqPvawMUU/1aLBNA1ML7mdpEe50vLNKWuVHpZt+ BbAN1lQi+QKSe0FAobbiyYN9vCPqH731qeprbG5PGLCthAQ97Tv1nnDLDl2FTnfX ZSXLAouHJmETp2sdM2LoesXWthYJrOCZkrhzaivk80KWdOg1VPI2fx0kK4jrD7A/ aG2fLDyeVCJffIjA68pBF5I3n+kgcG8EsrMnjh/crfleXt4ONSh/oZyDuPVCRWVf JTRxe8a4AUce7zk/B1ZEbHospSgEK/jBcmLrlGS8kAvu/ibrBeWQU79nCwcXOGY0 OuwGNRlj8s490p1c/AcMwhWYhBz63f2AvroOPktlBJ4mGJzI4WXB+QlQR+Y4J2rb YSX+0pXhBHDP78pWS5WJJGFbBdlbp+v2T9ml67FQM7bcZvTFjLnJeQdvMg96Kq4r T5MjZ3rpMlMOA+TkD3fWD9E1iQj0H2UVgkOGTz3WKdi6Scp5s69vuKFsopRdEuMv FiT6oCxMV3Q= =XXyl -----END PGP SIGNATURE----- Thu May 16 00:30:43 UTC 2024 I: Checking whether the package is not for us Thu May 16 00:30:43 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu May 16 00:30:43 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu May 16 00:31:07 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 17 18:53:46 -12 2025 I: pbuilder-time-stamp: 1750229626 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barrnap_0.9+dfsg-3.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 19 01:36:16 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_dirs dpkg-source: info: applying use_both_hmmsets I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4131402/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d323568d9e1045a58b44d1efa57556d5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4131402' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3PZT5WXr/pbuilderrc_cJWs --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3PZT5WXr/b1 --logfile b1/build.log barrnap_0.9+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Mar 22 2023 more -rwsr-xr-x 1 root root 67744 Mar 22 2023 mount -rwxr-xr-x 1 root root 67744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 22 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Mar 22 2023 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4131402/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19578 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 77.3 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: hmmer which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 77.3 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4131402 and its subdirectories Thu May 16 00:31:08 UTC 2024 W: No second build log, what happened? Thu May 16 00:31:08 UTC 2024 W: Downloading the build dependencies failed Thu May 16 00:31:08 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu May 16 00:31:08 UTC 2024 W: Network problems are automatically rescheduled after some hours.