Thu Apr 27 13:54:16 UTC 2023 I: starting to build dialign/bookworm/arm64 on jenkins on '2023-04-27 13:53' Thu Apr 27 13:54:16 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/12791/console.log Thu Apr 27 13:54:16 UTC 2023 I: Downloading source for bookworm/dialign=2.2.1-11 --2023-04-27 13:54:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-11.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1982 (1.9K) [text/prs.lines.tag] Saving to: ‘dialign_2.2.1-11.dsc’ 0K . 100% 83.6M=0s 2023-04-27 13:54:16 (83.6 MB/s) - ‘dialign_2.2.1-11.dsc’ saved [1982/1982] Thu Apr 27 13:54:16 UTC 2023 I: dialign_2.2.1-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-11 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://dialign.gobics.de/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 8a575d34c7070162440ec468839bbb089d319d53 12404 dialign_2.2.1-11.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz d415e9e1fd0286a551d9f6b73a14f2200df2483ace6410d77d2ecb38e87609dc 12404 dialign_2.2.1-11.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz 01eeced94a0f72cbeafc09d593c95694 12404 dialign_2.2.1-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+zgIQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEY/g//QvsYRJbCKX5eH6QYz+H11RF528zDLgUj 9lGQvgEjsOyXDW/HvIymiho4wQXBQAgrC72niI3lMptJsYcr7J/EHbR9DSHQVYMV HDdh8ycNXHZ+TZRUw7Aw7YLNiwiLKjx5TFaIwzmoSeYeKNfIOcFHUyARuK8o1ER4 iRD0CGgMdU5X/FqSkJS0C0+uk5oJf2MtFpDidhzzslQQCU7/HsSSbEh9k32GDEm7 7Ym0HkIk8OrQLp80+DlJye6fsatd3Rlulk+xawvcvEd1wFzIG/CQctJxJbsR72dL so9fjl794v0uXi8A64Uh0URlIas7Kwzfd7+mxTjEf2Vs8Hv/SPwxpqwO6sTgn2p1 VHRDQUQLMXj8+rYJz5f6JXAEJtdoLRsN2/gDTIYQM5BD9IQzuxTPE2D/oINoZxdm AN4wLnnVflyWYleCLQeVr8w64PKHsSTeNsRoUDz9aPYwqoEma5gkzJI73ZnvELQ9 GPlg1KNhP2NYy9Zb73ceO7GaUGqafGCNH9GklqmqNeGpFhwmDjIw+ehebWIqNVx4 Ga4a+p4QQUvRgNodY6a4moAXdPx+Pjd19VakLqTobZvZQOnx/4c/OQ2LIZHShnfJ dOywFUWgIy+xkUvf6aAnYcuwbfBhD8bqfXUaLdQOx/KueeZGDV5BkRRITFWf3hYL o8Kw7hsTlpo= =tlSy -----END PGP SIGNATURE----- Thu Apr 27 13:54:16 UTC 2023 I: Checking whether the package is not for us Thu Apr 27 13:54:16 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Thu Apr 27 13:54:16 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Thu Apr 27 13:55:10 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 29 08:17:19 -12 2024 I: pbuilder-time-stamp: 1717013839 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign_2.2.1-11.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-11.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 16 19:49:24 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dialign_2.2.1-11.dsc: no acceptable signature found dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20514/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20514' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/pbuilderrc_i9kH --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/b1 --logfile b1/build.log dialign_2.2.1-11.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-210-generic #221-Ubuntu SMP Tue Apr 18 08:32:48 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 28 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/20514/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 74.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Fetched 18.3 MB in 0s (40.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../22-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libicu72:arm64 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dialign_2.2.1-11_source.changes dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/dialign-2.2.1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j8 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dialign-2.2.1/src' gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c anchor.c: In function 'multi_anc_read': anchor.c:118:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration] 118 | erreur("\n\n cannot find file with anchor points \n\n\n"); | ^~~~~~ anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration] 131 | if( word_count( line ) == 6 ) { | ^~~~~~~~~~ functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int] 856 | wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int] 885 | plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ input.c: In function 'exclude_frg_read': input.c:65:5: warning: implicit declaration of function 'erreur' [-Wimplicit-function-declaration] 65 | erreur("\n\n cannot find file with excluded fragments \n\n\n"); | ^~~~~~ output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int] 64 | extern plot_calc( int num , int e_len, float *w_count, float *pl, | ^~~~~~~~~ output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int] 66 | extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, | ^~~~~~~~~~~~~~ regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int] 154 | seq_parse( char *mot_regex ) { | ^~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int] 261 | main(int argc, char **argv) | ^~~~ dialign.c: In function 'main': dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration] 392 | regex_parse( mot_regex ) ; | ^~~~~~~~~~~ dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration] 487 | seq_parse( mot_regex ) ; | ^~~~~~~~~ dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration] 619 | exclude_frg_read ( input_name , exclude_list ) ; | ^~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/dialign-2.2.1/src' make[1]: Leaving directory '/build/dialign-2.2.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/dialign/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-11_arm64.deb'. dpkg-deb: building package 'dialign' in '../dialign_2.2.1-11_arm64.deb'. dpkg-genbuildinfo --build=binary -O../dialign_2.2.1-11_arm64.buildinfo dpkg-genchanges --build=binary -O../dialign_2.2.1-11_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20514 and its subdirectories I: Current time: Wed May 29 08:18:08 -12 2024 I: pbuilder-time-stamp: 1717013888 Thu Apr 27 13:55:11 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink12-arm64.debian.net. Thu Apr 27 13:55:11 UTC 2023 I: Preparing to do remote build '2' on codethink12-arm64.debian.net. Thu Apr 27 13:55:58 UTC 2023 I: Deleting $TMPDIR on codethink12-arm64.debian.net. Thu Apr 27 13:55:58 UTC 2023 I: dialign_2.2.1-11_arm64.changes: Format: 1.8 Date: Tue, 17 Nov 2020 08:41:55 +0100 Source: dialign Binary: dialign dialign-dbgsym Architecture: arm64 Version: 2.2.1-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign - Segment-based multiple sequence alignment Changes: dialign (2.2.1-11) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Andreas Tille ] * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Trim trailing whitespace. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) Checksums-Sha1: 00a687be26c9074946a57b3960a90df3b8aa10b1 70932 dialign-dbgsym_2.2.1-11_arm64.deb c5eda2645e758a429c9be2c8518053cc3a89f6cc 5122 dialign_2.2.1-11_arm64.buildinfo 8a6722adc7781d323565f48e6484e87b0eb62959 136288 dialign_2.2.1-11_arm64.deb Checksums-Sha256: 1cf1fd6a6a29e59dba0cab713dbadc903a698edefc5f068ec01d9106e234e522 70932 dialign-dbgsym_2.2.1-11_arm64.deb e840d15302ca6d02c95d30e2c8c399c55ff45407f39bf24790d00daadcaa099a 5122 dialign_2.2.1-11_arm64.buildinfo 868f697fb1e6e192421e53c43e81a4247d289e1e4760d6b3254c40e3f438f50a 136288 dialign_2.2.1-11_arm64.deb Files: 55caf86c699eff42052962a90ee58b07 70932 debug optional dialign-dbgsym_2.2.1-11_arm64.deb 8f1af476ad517811565774c38c881b6c 5122 science optional dialign_2.2.1-11_arm64.buildinfo b9f44d745574574bbd3c5db87e071927 136288 science optional dialign_2.2.1-11_arm64.deb Thu Apr 27 13:56:00 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/dialign_2.2.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/dialign_2.2.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/dialign_2.2.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/b1/dialign_2.2.1-11_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NjVMXUaF/b2/dialign_2.2.1-11_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.394s) 0.394s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Apr 27 13:56:01 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 27 13:56:01 UTC 2023 I: dialign from bookworm built successfully and reproducibly on arm64. Thu Apr 27 13:56:06 UTC 2023 I: Submitting .buildinfo files to external archives: Thu Apr 27 13:56:06 UTC 2023 I: Submitting 8.0K b1/dialign_2.2.1-11_arm64.buildinfo.asc Thu Apr 27 13:56:07 UTC 2023 I: Submitting 8.0K b2/dialign_2.2.1-11_arm64.buildinfo.asc Thu Apr 27 13:56:08 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 27 13:56:08 UTC 2023 I: Done submitting .buildinfo files. Thu Apr 27 13:56:08 UTC 2023 I: Removing signed dialign_2.2.1-11_arm64.buildinfo.asc files: removed './b1/dialign_2.2.1-11_arm64.buildinfo.asc' removed './b2/dialign_2.2.1-11_arm64.buildinfo.asc'