Sun Apr 9 16:47:50 UTC 2023 I: starting to build python-dicompylercore/bookworm/arm64 on jenkins on '2023-04-09 16:47' Sun Apr 9 16:47:50 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/5517/console.log Sun Apr 9 16:47:50 UTC 2023 I: Downloading source for bookworm/python-dicompylercore=0.5.5-5 --2023-04-09 16:47:51-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-dicompylercore/python-dicompylercore_0.5.5-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2283 (2.2K) [text/prs.lines.tag] Saving to: ‘python-dicompylercore_0.5.5-5.dsc’ 0K .. 100% 205M=0s 2023-04-09 16:47:51 (205 MB/s) - ‘python-dicompylercore_0.5.5-5.dsc’ saved [2283/2283] Sun Apr 9 16:47:51 UTC 2023 I: python-dicompylercore_0.5.5-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-dicompylercore Binary: python3-dicompylercore Architecture: any Version: 0.5.5-5 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/dicompyler/dicompyler-core Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-dicompylercore Vcs-Git: https://salsa.debian.org/med-team/python-dicompylercore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib , python3-pydicom , python3-shapely , python3-skimage Package-List: python3-dicompylercore deb python optional arch=any Checksums-Sha1: 6318cb1a8c494d315056e308359bcce53f069e7e 2712234 python-dicompylercore_0.5.5.orig.tar.gz 7bf55686f39214cbf9e6d3c914a68757e30e7550 3048 python-dicompylercore_0.5.5-5.debian.tar.xz Checksums-Sha256: 85ae0130b24fd19d5bfbc2b6f16e60b6c10fd98807e56dfde2a5e58986ec365f 2712234 python-dicompylercore_0.5.5.orig.tar.gz 8c18a24c477bd6325c52c954b5c142feab63cb43bc72a80e397271bb4572caf4 3048 python-dicompylercore_0.5.5-5.debian.tar.xz Files: fd9bad21f20e6cb45451ab27739e3429 2712234 python-dicompylercore_0.5.5.orig.tar.gz 00ee5ac7faf64eb2b8be23cbb6502269 3048 python-dicompylercore_0.5.5-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPCyT4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGU7g/+JrjcX079abaA8/pCZ+I91j9moR5d4lAI AI+zLCYn9dNbgsR7H10YxFvTyD7xXZNv7vlcKys2+H6R/EEkxfoISQxt7UU6ZloC 974VwtlhDzlpnJjU0hTRWrVOWePWUyuRFAXdZjPXzNflsi9vgyim8FwaCQoPx/8C zEtj2AD+Iz8pK2smNPKg2UlzhE9g8VqDue25WnWD/LQ/bEH0rTC/4alDks5c3suo qMyycUv7NCnT+dnPJKzbcjcHU9RLb9Y/yyRcuxWKBixVTRgDrDnxW2q/qBHzqvGc kYa3LdGHziGEld+MgjXOl4JTW3qOUzmudC9ePUQFh0xBraIyKCMVPd/J+nuW8tKH XuYg6ubmhNFz3VCafpn+6RcI5/sB3qdnqHE2Cg09HoKXH1RwbfY2ed+m9neoy8lK rb0h3dg8rnZ3YOzF12O3eHM9h8shqgCHqDWEZoWPdWosqaxbxy+UHw5t/dIV042A VNi+TDW2jo2wvRV3D/dlfTAczdiGz21FOZ4Y7nfCKiT1jSKGdZ2Vd2RZGjVaX5TF NCWGB/ix4frNSPytxbZxSSH+AwIrEVOrSKGJ0dPoR+ggmA3EMav6tXPNHefS58DU MvhJcBRPnBDaazV8ACQeHTYIRPXPveDkuny+d+fDDxNhuomxIaBhTDNJXs0JCe1C l/KlxG4ebsE= =Sadu -----END PGP SIGNATURE----- Sun Apr 9 16:47:51 UTC 2023 I: Checking whether the package is not for us Sun Apr 9 16:47:51 UTC 2023 I: Starting 1st build on remote node codethink10-arm64.debian.net. Sun Apr 9 16:47:51 UTC 2023 I: Preparing to do remote build '1' on codethink10-arm64.debian.net. Sun Apr 9 16:54:36 UTC 2023 I: Deleting $TMPDIR on codethink10-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 9 04:47:57 -12 2023 I: pbuilder-time-stamp: 1681058877 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dicompylercore_0.5.5-5.dsc] I: copying [./python-dicompylercore_0.5.5.orig.tar.gz] I: copying [./python-dicompylercore_0.5.5-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jan 14 03:24:46 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-dicompylercore_0.5.5-5.dsc: no acceptable signature found dpkg-source: info: extracting python-dicompylercore in python-dicompylercore-0.5.5 dpkg-source: info: unpacking python-dicompylercore_0.5.5.orig.tar.gz dpkg-source: info: unpacking python-dicompylercore_0.5.5-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying numpy_1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13258/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='13258' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/pbuilderrc_zSl4 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/b1 --logfile b1/build.log python-dicompylercore_0.5.5-5.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink10-arm64 4.15.0-208-generic #220-Ubuntu SMP Mon Mar 20 14:28:12 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 7 22:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/13258/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-pydicom, python3-shapely, python3-skimage dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-pydicom; however: Package python3-pydicom is not installed. pbuilder-satisfydepends-dummy depends on python3-shapely; however: Package python3-shapely is not installed. pbuilder-satisfydepends-dummy depends on python3-skimage; however: Package python3-skimage is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgeos-c1v5{a} libgeos3.11.1{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-imageio{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-pydicom{a} python3-pyparsing{a} python3-pythran{a} python3-pywt{a} python3-scipy{a} python3-setuptools{a} python3-shapely{a} python3-six{a} python3-skimage{a} python3-skimage-lib{a} python3-sympy{a} python3-tifffile{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-dask python3-gdal python3-html5lib python3-olefile python3-pydot python3-pygraphviz python3-pytest python3-yaml shared-mime-info wget xdg-user-dirs 0 packages upgraded, 152 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After unpacking 678 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-minimal arm64 3.11.2-6 [806 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 libexpat1 arm64 2.5.0-1 [84.8 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 python3.11-minimal arm64 3.11.2-6 [1858 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 python3-minimal arm64 3.11.2-1 [26.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 media-types all 10.0.0 [26.1 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-stdlib arm64 3.11.2-6 [1747 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 python3.11 arm64 3.11.2-6 [572 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 libpython3-stdlib arm64 3.11.2-1 [9012 B] Get: 11 http://deb.debian.org/debian bookworm/main arm64 python3 arm64 3.11.2-1 [26.0 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 23 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [973 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 libpng16-16 arm64 1.6.39-2 [269 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 libfreetype6 arm64 2.12.1+dfsg-4 [369 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 fontconfig-config arm64 2.14.1-4 [315 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libfontconfig1 arm64 2.14.1-4 [381 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libx11-data all 2:1.8.4-2 [292 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 libx11-6 arm64 2:1.8.4-2 [736 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libxrender1 arm64 1:0.9.10-1.1 [32.0 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libxft2 arm64 2.3.6-1 [58.7 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libxext6 arm64 2:1.3.4-1+b1 [51.7 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 x11-common all 1:7.7+23 [252 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libtk8.6 arm64 8.6.13-2 [729 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-4.1 [540 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 blt arm64 2.5.3+dfsg-4.1 [14.9 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 53 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 55 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 56 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.1+b3 [619 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 python3-lib2to3 all 3.11.2-2 [76.2 kB] Get: 64 http://deb.debian.org/debian bookworm/main arm64 python3-distutils all 3.11.2-2 [131 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 dh-python all 5.20230130 [104 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 fonts-lyx all 2.3.7-1 [186 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 libblas3 arm64 3.11.0-2 [91.4 kB] Get: 68 http://deb.debian.org/debian bookworm/main arm64 libboost1.74-dev arm64 1.74.0+ds1-20 [9510 kB] Get: 69 http://deb.debian.org/debian bookworm/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 70 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 71 http://deb.debian.org/debian bookworm/main arm64 libexpat1-dev arm64 2.5.0-1 [135 kB] Get: 72 http://deb.debian.org/debian bookworm/main arm64 libfribidi0 arm64 1.0.8-2.1 [64.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main arm64 libgeos3.11.1 arm64 3.11.1-1 [683 kB] Get: 74 http://deb.debian.org/debian bookworm/main arm64 libgeos-c1v5 arm64 3.11.1-1 [75.6 kB] Get: 75 http://deb.debian.org/debian bookworm/main arm64 libgfortran5 arm64 12.2.0-14 [340 kB] Get: 76 http://deb.debian.org/debian bookworm/main arm64 libglib2.0-0 arm64 2.74.6-1 [1311 kB] Get: 77 http://deb.debian.org/debian bookworm/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 78 http://deb.debian.org/debian bookworm/main arm64 libharfbuzz0b arm64 6.0.0+dfsg-3 [1914 kB] Get: 79 http://deb.debian.org/debian bookworm/main arm64 libimagequant0 arm64 2.17.0-1 [31.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main arm64 libjbig0 arm64 2.1-6.1 [30.0 kB] Get: 81 http://deb.debian.org/debian bookworm/main arm64 libjpeg62-turbo arm64 1:2.1.5-2 [171 kB] Get: 82 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 83 http://deb.debian.org/debian bookworm/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 84 http://deb.debian.org/debian bookworm/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian bookworm/main arm64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 86 http://deb.debian.org/debian bookworm/main arm64 libopenblas0-pthread arm64 0.3.21+ds-4 [4532 kB] Get: 87 http://deb.debian.org/debian bookworm/main arm64 liblapack3 arm64 3.11.0-2 [1664 kB] Get: 88 http://deb.debian.org/debian bookworm/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1 [24.9 kB] Get: 89 http://deb.debian.org/debian bookworm/main arm64 liblcms2-2 arm64 2.14-2 [143 kB] Get: 90 http://deb.debian.org/debian bookworm/main arm64 liblerc4 arm64 4.0.0+ds-2 [138 kB] Get: 91 http://deb.debian.org/debian bookworm/main arm64 libopenblas0 arm64 0.3.21+ds-4 [32.6 kB] Get: 92 http://deb.debian.org/debian bookworm/main arm64 libopenblas-pthread-dev arm64 0.3.21+ds-4 [3169 kB] Get: 93 http://deb.debian.org/debian bookworm/main arm64 libopenblas-dev arm64 0.3.21+ds-4 [44.9 kB] Get: 94 http://deb.debian.org/debian bookworm/main arm64 libopenjp2-7 arm64 2.5.0-1+b1 [176 kB] Get: 95 http://deb.debian.org/debian bookworm/main arm64 libpython3.11 arm64 3.11.2-6 [1841 kB] Get: 96 http://deb.debian.org/debian bookworm/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] Get: 97 http://deb.debian.org/debian bookworm/main arm64 libpython3.11-dev arm64 3.11.2-6 [4395 kB] Get: 98 http://deb.debian.org/debian bookworm/main arm64 libpython3-dev arm64 3.11.2-1 [9252 B] Get: 99 http://deb.debian.org/debian bookworm/main arm64 libpython3-all-dev arm64 3.11.2-1 [1064 B] Get: 100 http://deb.debian.org/debian bookworm/main arm64 libqhull-r8.0 arm64 2020.2-5 [230 kB] Get: 101 http://deb.debian.org/debian bookworm/main arm64 libraqm0 arm64 0.7.0-4.1 [10.4 kB] Get: 102 http://deb.debian.org/debian bookworm/main arm64 libwebp7 arm64 1.2.4-0.1 [259 kB] Get: 103 http://deb.debian.org/debian bookworm/main arm64 libtiff6 arm64 4.5.0-5 [300 kB] Get: 104 http://deb.debian.org/debian bookworm/main arm64 libwebpdemux2 arm64 1.2.4-0.1 [99.1 kB] Get: 105 http://deb.debian.org/debian bookworm/main arm64 libwebpmux3 arm64 1.2.4-0.1 [109 kB] Get: 106 http://deb.debian.org/debian bookworm/main arm64 libxsimd-dev arm64 8.1.0-7 [88.8 kB] Get: 107 http://deb.debian.org/debian bookworm/main arm64 libxslt1.1 arm64 1.1.35-1 [231 kB] Get: 108 http://deb.debian.org/debian bookworm/main arm64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 109 http://deb.debian.org/debian bookworm/main arm64 python3-all arm64 3.11.2-1 [1060 B] Get: 110 http://deb.debian.org/debian bookworm/main arm64 python3.11-dev arm64 3.11.2-6 [617 kB] Get: 111 http://deb.debian.org/debian bookworm/main arm64 python3-dev arm64 3.11.2-1 [26.2 kB] Get: 112 http://deb.debian.org/debian bookworm/main arm64 python3-all-dev arm64 3.11.2-1 [1068 B] Get: 113 http://deb.debian.org/debian bookworm/main arm64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 114 http://deb.debian.org/debian bookworm/main arm64 python3-attr all 22.2.0-1 [65.4 kB] Get: 115 http://deb.debian.org/debian bookworm/main arm64 python3-gast all 0.5.2-2 [9364 B] Get: 116 http://deb.debian.org/debian bookworm/main arm64 python3-beniget all 0.4.1-3 [9920 B] Get: 117 http://deb.debian.org/debian bookworm/main arm64 python3-brotli arm64 1.0.9-2+b6 [281 kB] Get: 118 http://deb.debian.org/debian bookworm/main arm64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 119 http://deb.debian.org/debian bookworm/main arm64 python3-numpy arm64 1:1.24.2-1 [4751 kB] Get: 120 http://deb.debian.org/debian bookworm/main arm64 python3-contourpy arm64 1.0.7-1+b1 [154 kB] Get: 121 http://deb.debian.org/debian bookworm/main arm64 python3-cycler all 0.11.0-1 [8020 B] Get: 122 http://deb.debian.org/debian bookworm/main arm64 python3-six all 1.16.0-4 [17.5 kB] Get: 123 http://deb.debian.org/debian bookworm/main arm64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 124 http://deb.debian.org/debian bookworm/main arm64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 125 http://deb.debian.org/debian bookworm/main arm64 python3-ply all 3.11-5 [65.8 kB] Get: 126 http://deb.debian.org/debian bookworm/main arm64 python3-pythran arm64 0.11.0+ds-7 [427 kB] Get: 127 http://deb.debian.org/debian bookworm/main arm64 python3-scipy arm64 1.10.1-2 [14.2 MB] Get: 128 http://deb.debian.org/debian bookworm/main arm64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 129 http://deb.debian.org/debian bookworm/main arm64 python3-mpmath all 1.2.1-2 [418 kB] Get: 130 http://deb.debian.org/debian bookworm/main arm64 python3-sympy all 1.11.1-1 [4358 kB] Get: 131 http://deb.debian.org/debian bookworm/main arm64 python3-tz all 2022.7.1-1 [32.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main arm64 python3-fs all 2.4.16-2 [95.2 kB] Get: 133 http://deb.debian.org/debian bookworm/main arm64 python3-lxml arm64 4.9.2-1+b1 [1074 kB] Get: 134 http://deb.debian.org/debian bookworm/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 135 http://deb.debian.org/debian bookworm/main arm64 unicode-data all 15.0.0-1 [7984 kB] Get: 136 http://deb.debian.org/debian bookworm/main arm64 python3-fonttools arm64 4.38.0-1+b1 [990 kB] Get: 137 http://deb.debian.org/debian bookworm/main arm64 python3-tk arm64 3.11.2-2 [97.7 kB] Get: 138 http://deb.debian.org/debian bookworm/main arm64 python3-pil.imagetk arm64 9.4.0-1.1+b1 [74.4 kB] Get: 139 http://deb.debian.org/debian bookworm/main arm64 python3-pil arm64 9.4.0-1.1+b1 [452 kB] Get: 140 http://deb.debian.org/debian bookworm/main arm64 python3-imageio all 2.4.1-5 [3137 kB] Get: 141 http://deb.debian.org/debian bookworm/main arm64 python3-kiwisolver arm64 1.4.4-1+b1 [55.4 kB] Get: 142 http://deb.debian.org/debian bookworm/main arm64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 143 http://deb.debian.org/debian bookworm/main arm64 python3-packaging all 23.0-1 [32.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main arm64 python3-matplotlib arm64 3.6.3-1+b1 [6774 kB] Get: 145 http://deb.debian.org/debian bookworm/main arm64 python3-networkx all 2.8.8-1 [1425 kB] Get: 146 http://deb.debian.org/debian bookworm/main arm64 python3-pydicom all 2.3.1-1 [1239 kB] Get: 147 http://deb.debian.org/debian bookworm/main arm64 python3-pywt arm64 1.1.1-3+b2 [919 kB] Get: 148 http://deb.debian.org/debian bookworm/main arm64 python3-setuptools all 66.1.1-1 [521 kB] Get: 149 http://deb.debian.org/debian bookworm/main arm64 python3-shapely arm64 1.8.5-2+b1 [181 kB] Get: 150 http://deb.debian.org/debian bookworm/main arm64 python3-skimage-lib arm64 0.19.3-8+b1 [1780 kB] Get: 151 http://deb.debian.org/debian bookworm/main arm64 python3-tifffile all 20230203-1 [175 kB] Get: 152 http://deb.debian.org/debian bookworm/main arm64 python3-skimage all 0.19.3-8 [20.7 MB] Fetched 141 MB in 5s (28.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.2-6_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.2-6) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-1_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_arm64.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:arm64 (3.11.2-6) ... Setting up libexpat1:arm64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1_arm64.deb ... Unpacking python3-minimal (3.11.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package readline-common. Preparing to unpack .../2-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../3-libreadline8_8.2-1.3_arm64.deb ... Unpacking libreadline8:arm64 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../4-libpython3.11-stdlib_3.11.2-6_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../5-python3.11_3.11.2-6_arm64.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../6-libpython3-stdlib_3.11.2-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.2-1) ... Setting up python3-minimal (3.11.2-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20364 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1_arm64.deb ... Unpacking python3 (3.11.2-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../016-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../017-libbrotli1_1.0.9-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../018-libpng16-16_1.6.39-2_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.39-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../019-libfreetype6_2.12.1+dfsg-4_arm64.deb ... Unpacking libfreetype6:arm64 (2.12.1+dfsg-4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../020-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../021-fontconfig-config_2.14.1-4_arm64.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../022-libfontconfig1_2.14.1-4_arm64.deb ... Unpacking libfontconfig1:arm64 (2.14.1-4) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../023-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../024-libbsd0_0.11.7-2_arm64.deb ... Unpacking libbsd0:arm64 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../025-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../026-libxcb1_1.15-1_arm64.deb ... Unpacking libxcb1:arm64 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../027-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../028-libx11-6_2%3a1.8.4-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.4-2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../029-libxrender1_1%3a0.9.10-1.1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../030-libxft2_2.3.6-1_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../031-libxext6_2%3a1.3.4-1+b1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../032-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../033-libxss1_1%3a1.2.3-1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../034-libtk8.6_8.6.13-2_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.13-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../035-tk8.6-blt2.5_2.5.3+dfsg-4.1_arm64.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../036-blt_2.5.3+dfsg-4.1_arm64.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../044-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../046-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../047-libxml2_2.9.14+dfsg-1.1+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.21-12_arm64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../049-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../050-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../051-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../052-python3-lib2to3_3.11.2-2_all.deb ... Unpacking python3-lib2to3 (3.11.2-2) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../053-python3-distutils_3.11.2-2_all.deb ... Unpacking python3-distutils (3.11.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../054-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../055-fonts-lyx_2.3.7-1_all.deb ... Unpacking fonts-lyx (2.3.7-1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../056-libblas3_3.11.0-2_arm64.deb ... Unpacking libblas3:arm64 (3.11.0-2) ... 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Selecting previously unselected package python3-shapely. Preparing to unpack .../138-python3-shapely_1.8.5-2+b1_arm64.deb ... Unpacking python3-shapely (1.8.5-2+b1) ... Selecting previously unselected package python3-skimage-lib:arm64. Preparing to unpack .../139-python3-skimage-lib_0.19.3-8+b1_arm64.deb ... Unpacking python3-skimage-lib:arm64 (0.19.3-8+b1) ... Selecting previously unselected package python3-tifffile. Preparing to unpack .../140-python3-tifffile_20230203-1_all.deb ... Unpacking python3-tifffile (20230203-1) ... Selecting previously unselected package python3-skimage. Preparing to unpack .../141-python3-skimage_0.19.3-8_all.deb ... Unpacking python3-skimage (0.19.3-8) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up liblcms2-2:arm64 (2.14-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libboost1.74-dev:arm64 (1.74.0+ds1-20) ... Setting up libicu72:arm64 (72.1-3) ... Setting up liblerc4:arm64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libgeos3.11.1:arm64 (3.11.1-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.74.6-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:arm64 (1:5.44-3) ... Setting up libdeflate0:arm64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:arm64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:arm64 (2.1-6.1) ... Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:arm64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.5.0-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libfribidi0:arm64 (1.0.8-2.1) ... Setting up libimagequant0:arm64 (2.17.0-1) ... Setting up libpng16-16:arm64 (1.6.39-2) ... Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libgeos-c1v5:arm64 (3.11.1-1) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:arm64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.2.4-0.1) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:arm64 (4.5.0-5) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libopenjp2-7:arm64 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:arm64 (1.2.4-0.1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.1+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.11.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/aarch64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:arm64 (1.2.4-0.1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.12.1+dfsg-4) ... 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Setting up libopenblas-pthread-dev:arm64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode update-alternatives: using /usr/lib/aarch64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/aarch64-linux-gnu/libopenblas.so (libopenblas.so-aarch64-linux-gnu) in auto mode Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:arm64 (3.11.2-6) ... Setting up libxext6:arm64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libopenblas-dev:arm64 (0.3.21+ds-4) ... Setting up libraqm0:arm64 (0.7.0-4.1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libpython3-stdlib:arm64 (3.11.2-1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:arm64 (2.3.6-1) ... Setting up libpython3.11:arm64 (3.11.2-6) ... Setting up libtk8.6:arm64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1) ... Setting up python3-tz (2022.7.1-1) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up libpython3.11-dev:arm64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:arm64 (4.9.2-1+b1) ... Setting up python3-pydicom (2.3.1-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-2) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-2) ... Setting up dh-python (5.20230130) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:arm64 (3.11.2-1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1) ... Setting up python3-tk:arm64 (3.11.2-2) ... Setting up python3-networkx (2.8.8-1) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3-all-dev:arm64 (3.11.2-1) ... Setting up python3-dev (3.11.2-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-pywt (1.1.1-3+b2) ... Setting up python3-all-dev (3.11.2-1) ... Setting up python3-shapely (1.8.5-2+b1) ... Setting up python3-skimage-lib:arm64 (0.19.3-8+b1) ... Setting up python3-tifffile (20230203-1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:arm64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:arm64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-imageio (2.4.1-5) ... /usr/lib/python3/dist-packages/imageio/plugins/_tifffile.py:2813: SyntaxWarning: "is" with a literal. Did you mean "=="? if key is 0: Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-skimage (0.19.3-8) ... Processing triggers for libc-bin (2.36-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-dicompylercore-0.5.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dicompylercore_0.5.5-5_source.changes dpkg-buildpackage: info: source package python-dicompylercore dpkg-buildpackage: info: source version 0.5.5-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/dvhcalc.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/util.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/dvh.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/dicomparser.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/config.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore copying dicompylercore/__init__.py -> /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore running egg_info creating dicompyler_core.egg-info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' adding license file 'LICENSE' adding license file 'AUTHORS.rst' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py test running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' adding license file 'LICENSE' adding license file 'AUTHORS.rst' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running build_ext generated new fontManager test_dvh_calculation (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation) Test if cumulative DVHs can be calculated from the DICOM data. ... /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:440: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. m = np.matrix( /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:449: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. imat = m * np.matrix([[i], [0], [0], [1]]) /usr/lib/python3/dist-packages/numpy/matrixlib/defmatrix.py:69: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. return matrix(data, dtype=dtype, copy=False) /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:452: PendingDeprecationWarning: the matrix subclass is not the recommended way to represent matrices or deal with linear algebra (see https://docs.scipy.org/doc/numpy/user/numpy-for-matlab-users.html). Please adjust your code to use regular ndarray. jmat = m * np.matrix([[0], [j], [0], [1]]) ok test_dvh_calculation_empty_structure_no_dose (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_empty_structure_no_dose) Test if a DVH returns an empty histogram for invalid data. ... ok test_dvh_calculation_with_dose_limit (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_dose_limit) Test if a DVH can be calculated with a max dose limit. ... ok test_dvh_calculation_with_interpolation_between_planes (tests.test_dvhcalc.TestDVHCalc.test_dvh_calculation_with_interpolation_between_planes) Test if DVH can be calculated using interpolation between planes. ... ok test_dvh_contour_outside_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_contour_outside_dose_grid) Test if a DVH can be calculated with contours outside a dosegrid. ... Dose plane not found for 180.00. Using -122.4407 to calculate contour volume. Dose plane not found for 180.00. Contours not used for volume calculation. ok test_dvh_with_in_plane_interpolation (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_in_plane_interpolation) Test if DVH can be calculated using in plane interpolation. ... ok test_dvh_with_in_plane_interpolation_sampling_fail (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_in_plane_interpolation_sampling_fail) Test if DVH calculation fails when the sampling rate is invalid. ... ok test_dvh_with_structure_extents (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents) Test if DVH calculation is same as normal with structure extents. ... ok test_dvh_with_structure_extents_larger_than_dose_grid (tests.test_dvhcalc.TestDVHCalc.test_dvh_with_structure_extents_larger_than_dose_grid) Test DVH calculation using large structure structure extents. ... ok test_absolute_relative_dose_dvh (tests.test_dvh.TestDVH.test_absolute_relative_dose_dvh) Test if an absolute and relative dose DVH can be generated. ... ok test_absolute_relative_full_conversion (tests.test_dvh.TestDVH.test_absolute_relative_full_conversion) Test if an abs / relative volume / dose DVH can be generated. ... ok test_absolute_relative_volume_dvh (tests.test_dvh.TestDVH.test_absolute_relative_volume_dvh) Test if an absolute and relative volume DVH can be generated. ... ok test_cumulative_dvh (tests.test_dvh.TestDVH.test_cumulative_dvh) Test if a differential DVH can be converted to a cumulative DVH. ... ok test_differential_dvh (tests.test_dvh.TestDVH.test_differential_dvh) Test if a cumulative DVH can be converted to a differential DVH. ... ok test_dose_constraint_with_no_counts (tests.test_dvh.TestDVH.test_dose_constraint_with_no_counts) ... ok test_dose_constraint_with_zero_volume (tests.test_dvh.TestDVH.test_dose_constraint_with_zero_volume) ... ok test_dvh_compare (tests.test_dvh.TestDVH.test_dvh_compare) Test if the DVH comparsion summary can be generated. ... ok test_dvh_describe (tests.test_dvh.TestDVH.test_dvh_describe) Test if the DVH statistics summary can be generated. ... ok test_dvh_properties (tests.test_dvh.TestDVH.test_dvh_properties) Test if the DVH properties can be derived. ... ok test_dvh_statistics (tests.test_dvh.TestDVH.test_dvh_statistics) Test if the DVH statistics can be calculated. ... ok test_dvh_statistics_shorthand (tests.test_dvh.TestDVH.test_dvh_statistics_shorthand) Test if the DVH statistics can be accessed via shorthand. ... ok test_dvh_statistics_shorthand_fail (tests.test_dvh.TestDVH.test_dvh_statistics_shorthand_fail) Test if the DVH statistics shorthand fail on invalid syntaxes. ... ok test_dvh_statistics_with_no_counts (tests.test_dvh.TestDVH.test_dvh_statistics_with_no_counts) ... ok test_dvh_statistics_with_zero_volume (tests.test_dvh.TestDVH.test_dvh_statistics_with_zero_volume) ... ok test_dvh_value (tests.test_dvh.TestDVH.test_dvh_value) Test if the DVHValue class works as expected. ... ok test_plotting (tests.test_dvh.TestDVH.test_plotting) Test if the DVH can be plotted. ... ok test_raw_data_dvh (tests.test_dvh.TestDVH.test_raw_data_dvh) Test if a DVH can be created from raw data. ... ok test_raw_data_dvh_max_bins (tests.test_dvh.TestDVH.test_raw_data_dvh_max_bins) Test if a DVH can be created from raw data with [0, 5] bin. ... ok test_dataset_import (tests.test_dicomparser.TestCommon.test_dataset_import) Test if a pydicom dataset file can be parsed. ... ok test_demographics (tests.test_dicomparser.TestCommon.test_demographics) Test if the demographics info can be parsed. ... ok test_file_import (tests.test_dicomparser.TestCommon.test_file_import) Test if a standard DICOM file can be parsed. ... ok test_frame_of_reference (tests.test_dicomparser.TestCommon.test_frame_of_reference) Test if the frame of reference can be parsed. ... ok test_series_info (tests.test_dicomparser.TestCommon.test_series_info) Test if the series info can be parsed. ... ok test_study_info (tests.test_dicomparser.TestCommon.test_study_info) Test if the study info can be parsed. ... ok test_image_data (tests.test_dicomparser.TestImage.test_image_data) Test if the image data info can be parsed. ... ok test_image_generation (tests.test_dicomparser.TestImage.test_image_generation) Test if the image can be generated. ... ok test_image_location (tests.test_dicomparser.TestImage.test_image_location) Test if the image location can be parsed. ... ok test_image_orientation (tests.test_dicomparser.TestImage.test_image_orientation) Test if the image orientation can be parsed. ... ok test_patient_to_pixel_lut (tests.test_dicomparser.TestImage.test_patient_to_pixel_lut) Test if the image transformation matrix (LUT) can be generated. ... ok test_dose_data (tests.test_dicomparser.TestRTDose.test_dose_data) Test if the dose data can be parsed. ... ok test_dose_grid (tests.test_dicomparser.TestRTDose.test_dose_grid) Test if the dose grid can be parsed. ... ok test_dvh_data (tests.test_dicomparser.TestRTDose.test_dvh_data) Test if the DVH data can be parsed. ... ok test_has_dvhs (tests.test_dicomparser.TestRTDose.test_has_dvhs) Test if DVHs exist in the dataset. ... ok test_isodose_points (tests.test_dicomparser.TestRTDose.test_isodose_points) Test if isodose points can be generated from the dose grid. ... ok test_referenced_plan (tests.test_dicomparser.TestRTDose.test_referenced_plan) Test if the referenced plan can be parsed. ... ok test_plan_beams_in_fraction (tests.test_dicomparser.TestRTPlan.test_plan_beams_in_fraction) Test if beams for a given fraction data can be parsed. ... ok test_plan_data (tests.test_dicomparser.TestRTPlan.test_plan_data) Test if the plan data can be parsed. ... ok test_referenced_structureset (tests.test_dicomparser.TestRTPlan.test_referenced_structureset) Test if the referenced structure set can be parsed. ... ok test_referenced_frame_of_reference (tests.test_dicomparser.TestRTStructureSet.test_referenced_frame_of_reference) Test if the referenced frame of reference can be parsed. ... ok test_referenced_series (tests.test_dicomparser.TestRTStructureSet.test_referenced_series) Test if the referenced series can be parsed. ... ok test_structure_plane_thickness (tests.test_dicomparser.TestRTStructureSet.test_structure_plane_thickness) Test if a structure plane thickness can be parsed. ... ok test_structure_set_coordinates (tests.test_dicomparser.TestRTStructureSet.test_structure_set_coordinates) Test if the structure set coordinates can be parsed. ... ok test_structure_set_data (tests.test_dicomparser.TestRTStructureSet.test_structure_set_data) Test if the structure set data can be parsed. ... ok test_structure_set_info (tests.test_dicomparser.TestRTStructureSet.test_structure_set_info) Test if the structure set info can be parsed. ... ok test_structure_volume (tests.test_dicomparser.TestRTStructureSet.test_structure_volume) Test if a structure volume can be calculated. ... ok test_structure_volume_holes (tests.test_dicomparser.TestRTStructureSet.test_structure_volume_holes) Test if a structure volume with holes can be calculated. ... /build/python-dicompylercore-0.5.5/dicompylercore/dicomparser.py:610: ShapelyDeprecationWarning: Setting custom attributes on geometry objects is deprecated, and will raise an AttributeError in Shapely 2.0 self.o = o ok ---------------------------------------------------------------------- Ran 56 tests in 10.929s OK Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 14.58 Gy 14.58 Gy +0.00 % +0.00 Min: 14.07 Gy 14.07 Gy +0.00 % +0.00 Mean: 14.29 Gy 14.29 Gy +0.00 % +0.00 D100: 14.06 Gy 14.06 Gy +0.00 % +0.00 D98: 14.12 Gy 14.12 Gy +0.00 % +0.00 D95: 14.14 Gy 14.14 Gy +0.00 % +0.00 D2cc: 14.39 Gy 14.39 Gy +0.00 % +0.00 Structure: test test Rel Diff Abs diff ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 12.81 cm3 +0.00 % +0.00 Max: 104.14 % 104.14 % +0.00 % +0.00 Min: 100.50 % 100.50 % +0.00 % +0.00 Mean: 102.04 % 102.04 % +0.00 % +0.00 D100: 100.43 % 100.43 % +0.00 % +0.00 D98: 100.86 % 100.86 % +0.00 % +0.00 D95: 101.00 % 101.00 % +0.00 % +0.00 V100: 12.81 % 12.81 % +0.00 % +0.00 V95: 12.81 % 12.81 % +0.00 % +0.00 V5: 12.81 % 12.81 % +0.00 % +0.00 D2cc: 102.79 % 102.79 % +0.00 % +0.00 Structure: test ----- DVH Type: cumulative, abs dose: Gy, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 14.58 Gy Min Dose: 14.07 Gy Mean Dose: 14.29 Gy D100: 14.06 Gy D98: 14.12 Gy D95: 14.14 Gy D2cc: 14.39 Gy Structure: test ----- DVH Type: cumulative, rel dose, abs volume: cm3 Volume: 12.81 cm3 Max Dose: 104.14 % Min Dose: 100.50 % Mean Dose: 102.04 % D100: 100.43 % D98: 100.86 % D95: 101.00 % V100: 12.81 cm3 V95: 12.81 cm3 V5: 12.81 cm3 D2cc: 102.79 % create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-dicompylercore/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing dicompyler_core.egg-info/PKG-INFO writing dependency_links to dicompyler_core.egg-info/dependency_links.txt writing requirements to dicompyler_core.egg-info/requires.txt writing top-level names to dicompyler_core.egg-info/top_level.txt reading manifest file 'dicompyler_core.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.DS_Store' found under directory '*' adding license file 'LICENSE' adding license file 'AUTHORS.rst' writing manifest file 'dicompyler_core.egg-info/SOURCES.txt' running install_lib creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11 creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages creating /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/__init__.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/config.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/dicomparser.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/dvh.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/util.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore copying /build/python-dicompylercore-0.5.5/.pybuild/cpython3_3.11/build/dicompylercore/dvhcalc.py -> /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/config.py to config.cpython-311.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/dicomparser.py to dicomparser.cpython-311.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/dvh.py to dvh.cpython-311.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/util.py to util.cpython-311.pyc byte-compiling /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompylercore/dvhcalc.py to dvhcalc.cpython-311.pyc running install_egg_info Copying dicompyler_core.egg-info to /build/python-dicompylercore-0.5.5/debian/python3-dicompylercore/usr/lib/python3.11/dist-packages/dicompyler_core-0.5.5.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dicompylercore: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dicompylercore' in '../python3-dicompylercore_0.5.5-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-dicompylercore_0.5.5-5_arm64.buildinfo dpkg-genchanges --build=binary -O../python-dicompylercore_0.5.5-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13258 and its subdirectories I: Current time: Sun Apr 9 04:51:16 -12 2023 I: pbuilder-time-stamp: 1681059076 Sun Apr 9 16:54:37 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Sun Apr 9 16:54:37 UTC 2023 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Sun Apr 9 16:58:19 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Sun Apr 9 16:58:19 UTC 2023 I: python-dicompylercore_0.5.5-5_arm64.changes: Format: 1.8 Date: Sat, 14 Jan 2023 16:22:44 +0100 Source: python-dicompylercore Binary: python3-dicompylercore Architecture: arm64 Version: 0.5.5-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-dicompylercore - core radiation therapy modules for DICOM / DICOM RT used by dicom Closes: 1028823 Changes: python-dicompylercore (0.5.5-5) unstable; urgency=medium . * Adapt to numpy 1.24 Closes: #1028823 * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 56a6e465e671aadff44f6d6a83a3511073cce50f 8683 python-dicompylercore_0.5.5-5_arm64.buildinfo 75e2dbaa2c4dbd09fd5cdefdde692aca94256d2b 24132 python3-dicompylercore_0.5.5-5_arm64.deb Checksums-Sha256: 4dd22a75b3797b755138163e1e6161cfc6994e2bc444fdeb600b4f95714961fb 8683 python-dicompylercore_0.5.5-5_arm64.buildinfo ed66ff1cd1fe190a9184b2570af2f402657c9510f7fcb2ef9b8bf203cc81b548 24132 python3-dicompylercore_0.5.5-5_arm64.deb Files: e4b113574db57953499518a66ec98297 8683 python optional python-dicompylercore_0.5.5-5_arm64.buildinfo 31f7b8fdb06e759fd6a21645890b5ad9 24132 python optional python3-dicompylercore_0.5.5-5_arm64.deb Sun Apr 9 16:58:21 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/python-dicompylercore_0.5.5-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/python-dicompylercore_0.5.5-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/python-dicompylercore_0.5.5-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/b1/python-dicompylercore_0.5.5-5_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.45mm4VNM/b2/python-dicompylercore_0.5.5-5_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.316s) 0.316s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Apr 9 16:58:22 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 9 16:58:22 UTC 2023 I: python-dicompylercore from bookworm built successfully and reproducibly on arm64. Sun Apr 9 16:58:25 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Apr 9 16:58:25 UTC 2023 I: Submitting 12K b1/python-dicompylercore_0.5.5-5_arm64.buildinfo.asc Sun Apr 9 16:58:26 UTC 2023 I: Submitting 12K b2/python-dicompylercore_0.5.5-5_arm64.buildinfo.asc Sun Apr 9 16:58:27 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 9 16:58:27 UTC 2023 I: Done submitting .buildinfo files. Sun Apr 9 16:58:27 UTC 2023 I: Removing signed python-dicompylercore_0.5.5-5_arm64.buildinfo.asc files: removed './b1/python-dicompylercore_0.5.5-5_arm64.buildinfo.asc' removed './b2/python-dicompylercore_0.5.5-5_arm64.buildinfo.asc'