Thu May 18 15:12:28 UTC 2023 I: starting to build quorum/bookworm/arm64 on jenkins on '2023-05-18 15:12' Thu May 18 15:12:28 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/26028/console.log Thu May 18 15:12:28 UTC 2023 I: Downloading source for bookworm/quorum=1.1.1-7 --2023-05-18 15:12:28-- http://cdn-fastly.deb.debian.org/debian/pool/main/q/quorum/quorum_1.1.1-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2066 (2.0K) [text/prs.lines.tag] Saving to: ‘quorum_1.1.1-7.dsc’ 0K .. 100% 20.2M=0s 2023-05-18 15:12:28 (20.2 MB/s) - ‘quorum_1.1.1-7.dsc’ saved [2066/2066] Thu May 18 15:12:28 UTC 2023 I: quorum_1.1.1-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: quorum Binary: quorum Architecture: any Version: 1.1.1-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/gmarcais/Quorum Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/quorum Vcs-Git: https://salsa.debian.org/med-team/quorum.git Testsuite: autopkgtest Testsuite-Triggers: filtlong-data Build-Depends: debhelper-compat (= 13), libjellyfish-2.0-dev, jellyfish, yaggo, pkg-config Package-List: quorum deb science optional arch=any Checksums-Sha1: a3524ae371080269a4d79ad2cc501ebd24bddf85 2277528 quorum_1.1.1.orig.tar.gz 48c4f93e3df48db8683c27ca3ac98d2b50e6a2fa 6784 quorum_1.1.1-7.debian.tar.xz Checksums-Sha256: 0fb308d5b02f43e1e668a01b706aba7bbd61a7f24a4aab57d0261170d34a396a 2277528 quorum_1.1.1.orig.tar.gz 6c263d21212172d6e5b6f6ae22c6fe16d0f0a7ae2d1698395d6a0a61589528c9 6784 quorum_1.1.1-7.debian.tar.xz Files: 656be64da3b0837f4195aa9545b9b4b7 2277528 quorum_1.1.1.orig.tar.gz 5c075bb5cd7428aedbba8c3d79c767af 6784 quorum_1.1.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmLeSRIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGlBhAAg5izVYvfMho0iBP4mthql1QIku55oxrx 0cTNagVj2OcS1d02x2XK8hsiIo1ah3zR5R46hgb58bOEj13aba5VMarUocwnsZ3j lRnMF75QT6tiuLp2dBtV3i9YsC0yfaQynOAlTMlL6tsigxbQoJBhbWeYsvn+Bojs qf2TzJVAThcJE9JuGs5YyCjY2TnnjzWM20LMOeZrwS1700gX8C9eOcZTU78QHGUb toBeyKFFlXLxDTLrlXIkMFfmfNw/cK9dmY6/syUkPTCL2r28vOAhNqc/GhUTSIfd 9sthJH4M7Qwsi1OU19qNs6eBOlisdjmPTZKYs8yonY1/O1xNwt+1HXPZFc5/i4vS Odsptr49mkDd+mMVXZy9QvA/9Xew62jbCtPNREILUQBEDtYSPOCzc/utHNRBQuSe hGoR+SmzUybHDM2C6AkvWoVCfvrE1UkmEEEAGHloIc7V3akGVST1Ly2xkcJVy+oi DolMn/dQzwVyqwLg71SZ/V1ydE/Wwkdij2AaC/UcrAKUbCGcOKnzwt9uye8xDM71 vBBBe0mzTCmErNncf1v1GsjobFC7wtrtsbNSV4OC83MiXwNg7bcJc4NkFALuapmq JIK/SMFzmK+OxMHY3jBydhQ6GSor0xCZm1I2oqtMPKllvO88Nx9LdGWT3NIFng+L c8a+4IhHpSI= =vAWt -----END PGP SIGNATURE----- Thu May 18 15:12:28 UTC 2023 I: Checking whether the package is not for us Thu May 18 15:12:28 UTC 2023 I: Starting 1st build on remote node codethink13-arm64.debian.net. Thu May 18 15:12:28 UTC 2023 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Thu May 18 15:17:06 UTC 2023 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 19 09:35:35 -12 2024 I: pbuilder-time-stamp: 1718832935 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [quorum_1.1.1-7.dsc] I: copying [./quorum_1.1.1.orig.tar.gz] I: copying [./quorum_1.1.1-7.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 24 19:41:06 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./quorum_1.1.1-7.dsc: no acceptable signature found dpkg-source: info: extracting quorum in quorum-1.1.1 dpkg-source: info: unpacking quorum_1.1.1.orig.tar.gz dpkg-source: info: unpacking quorum_1.1.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13167/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='bookworm' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='13167' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/pbuilderrc_OJPZ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/b1 --logfile b1/build.log quorum_1.1.1-7.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-211-generic #222-Ubuntu SMP Tue Apr 18 18:58:27 UTC 2023 aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 18 04:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/13167/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libjellyfish-2.0-dev, jellyfish, yaggo, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libjellyfish-2.0-dev; however: Package libjellyfish-2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on jellyfish; however: Package jellyfish is not installed. pbuilder-satisfydepends-dummy depends on yaggo; however: Package yaggo is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} jellyfish{a} libarchive-zip-perl{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libjellyfish-2.0-2{a} libjellyfish-2.0-dev{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libpsl5{a} librtmp1{a} libruby{a} libruby3.1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} rake{a} ruby{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} yaggo{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget zip 0 packages upgraded, 67 newly installed, 0 to remove and 0 not upgraded. Need to get 29.4 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get: 3 http://deb.debian.org/debian bookworm/main arm64 ca-certificates all 20230311 [153 kB] Get: 4 http://deb.debian.org/debian bookworm/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main arm64 file arm64 1:5.44-3 [42.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main arm64 gettext-base arm64 0.21-12 [159 kB] Get: 8 http://deb.debian.org/debian bookworm/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get: 10 http://deb.debian.org/debian bookworm/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get: 11 http://deb.debian.org/debian bookworm/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get: 12 http://deb.debian.org/debian bookworm/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get: 13 http://deb.debian.org/debian bookworm/main arm64 m4 arm64 1.4.19-3 [276 kB] Get: 14 http://deb.debian.org/debian bookworm/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main arm64 autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 19 http://deb.debian.org/debian bookworm/main arm64 libtool all 2.4.7-5 [517 kB] Get: 20 http://deb.debian.org/debian bookworm/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bookworm/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bookworm/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get: 23 http://deb.debian.org/debian bookworm/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian bookworm/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian bookworm/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get: 26 http://deb.debian.org/debian bookworm/main arm64 dwz arm64 0.15-1 [101 kB] Get: 27 http://deb.debian.org/debian bookworm/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get: 28 http://deb.debian.org/debian bookworm/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get: 29 http://deb.debian.org/debian bookworm/main arm64 gettext arm64 0.21-12 [1248 kB] Get: 30 http://deb.debian.org/debian bookworm/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian bookworm/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bookworm/main arm64 debhelper all 13.11.4 [942 kB] Get: 33 http://deb.debian.org/debian bookworm/main arm64 libbrotli1 arm64 1.0.9-2+b6 [269 kB] Get: 34 http://deb.debian.org/debian bookworm/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg-10 [20.8 kB] Get: 35 http://deb.debian.org/debian bookworm/main arm64 libsasl2-2 arm64 2.1.28+dfsg-10 [58.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main arm64 libldap-2.5-0 arm64 2.5.13+dfsg-5 [171 kB] Get: 37 http://deb.debian.org/debian bookworm/main arm64 libnghttp2-14 arm64 1.52.0-1 [67.9 kB] Get: 38 http://deb.debian.org/debian bookworm/main arm64 libpsl5 arm64 0.21.2-1 [58.6 kB] Get: 39 http://deb.debian.org/debian bookworm/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 40 http://deb.debian.org/debian bookworm/main arm64 libssh2-1 arm64 1.10.0-3+b1 [172 kB] Get: 41 http://deb.debian.org/debian bookworm/main arm64 libcurl3-gnutls arm64 7.88.1-9 [357 kB] Get: 42 http://deb.debian.org/debian bookworm/main arm64 libdeflate0 arm64 1.14-1 [54.3 kB] Get: 43 http://deb.debian.org/debian bookworm/main arm64 libhtscodecs2 arm64 1.3.0-4 [70.5 kB] Get: 44 http://deb.debian.org/debian bookworm/main arm64 libhts3 arm64 1.16+ds-3 [392 kB] Get: 45 http://deb.debian.org/debian bookworm/main arm64 libjellyfish-2.0-2 arm64 2.3.0-15+b3 [58.7 kB] Get: 46 http://deb.debian.org/debian bookworm/main arm64 jellyfish arm64 2.3.0-15+b3 [705 kB] Get: 47 http://deb.debian.org/debian bookworm/main arm64 libbsd0 arm64 0.11.7-2 [115 kB] Get: 48 http://deb.debian.org/debian bookworm/main arm64 libedit2 arm64 3.1-20221030-2 [88.1 kB] Get: 49 http://deb.debian.org/debian bookworm/main arm64 libjellyfish-2.0-dev arm64 2.3.0-15+b3 [133 kB] Get: 50 http://deb.debian.org/debian bookworm/main arm64 libncurses6 arm64 6.4-4 [93.9 kB] Get: 51 http://deb.debian.org/debian bookworm/main arm64 libpkgconf3 arm64 1.8.1-1 [35.3 kB] Get: 52 http://deb.debian.org/debian bookworm/main arm64 rubygems-integration all 1.18 [6704 B] Get: 53 http://deb.debian.org/debian bookworm/main arm64 ruby3.1 arm64 3.1.2-7 [663 kB] Get: 54 http://deb.debian.org/debian bookworm/main arm64 ruby-rubygems all 3.3.15-2 [293 kB] Get: 55 http://deb.debian.org/debian bookworm/main arm64 ruby arm64 1:3.1 [5868 B] Get: 56 http://deb.debian.org/debian bookworm/main arm64 rake all 13.0.6-3 [83.9 kB] Get: 57 http://deb.debian.org/debian bookworm/main arm64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 58 http://deb.debian.org/debian bookworm/main arm64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main arm64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main arm64 ruby-sdbm arm64 1.0.0-5+b1 [14.5 kB] Get: 61 http://deb.debian.org/debian bookworm/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main arm64 libruby3.1 arm64 3.1.2-7 [5248 kB] Get: 63 http://deb.debian.org/debian bookworm/main arm64 libruby arm64 1:3.1 [4968 B] Get: 64 http://deb.debian.org/debian bookworm/main arm64 pkgconf-bin arm64 1.8.1-1 [28.9 kB] Get: 65 http://deb.debian.org/debian bookworm/main arm64 pkgconf arm64 1.8.1-1 [25.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main arm64 pkg-config arm64 1.8.1-1 [13.7 kB] Get: 67 http://deb.debian.org/debian bookworm/main arm64 yaggo all 1.5.10-6 [21.2 kB] Fetched 29.4 MB in 3s (8949 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../04-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_arm64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_arm64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.7-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_arm64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_arm64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../24-libelf1_0.188-2.1_arm64.deb ... Unpacking libelf1:arm64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_arm64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../26-libicu72_72.1-3_arm64.deb ... Unpacking libicu72:arm64 (72.1-3) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_arm64.deb ... 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Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg-10) ... Setting up libjellyfish-2.0-2:arm64 (2.3.0-15+b3) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.4-4) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up autopoint (0.21-12) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:arm64 (1.10.0-3+b1) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:arm64 (0.11.7-2) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libjellyfish-2.0-dev (2.3.0-15+b3) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:arm64 (3.1-20221030-2) ... Setting up libldap-2.5-0:arm64 (2.5.13+dfsg-5) ... Setting up pkgconf:arm64 (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up pkg-config:arm64 (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:arm64 (7.88.1-9) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libhts3:arm64 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up jellyfish (2.3.0-15+b3) ... Setting up rake (13.0.6-3) ... Setting up libruby3.1:arm64 (3.1.2-7) ... Setting up libruby:arm64 (1:3.1) ... Setting up ruby (1:3.1) ... Setting up ruby3.1 (3.1.2-7) ... Setting up yaggo (1.5.10-6) ... Setting up ruby-sdbm:arm64 (1.0.0-5+b1) ... Setting up ruby-rubygems (3.3.15-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/quorum-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../quorum_1.1.1-7_source.changes dpkg-buildpackage: info: source package quorum dpkg-buildpackage: info: source version 1.1.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:37: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:37: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:37: the top level configure.ac:44: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:44: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:44: the top level configure.ac:49: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:49: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... ./lib/autoconf/general.m4:1553: AC_ARG_WITH is expanded from... configure.ac:49: the top level configure.ac:72: warning: AC_OUTPUT should be used without arguments. configure.ac:72: You should run autoupdate. configure.ac:10: installing 'build-aux/compile' configure.ac:10: installing 'build-aux/config.guess' configure.ac:10: installing 'build-aux/config.sub' configure.ac:6: installing 'build-aux/install-sh' configure.ac:6: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' dh_auto_configure -O--no-parallel ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert aarch64-unknown-linux-gnu file names to aarch64-unknown-linux-gnu format... func_convert_file_noop checking how to convert aarch64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for pthread_create in -lpthread... yes checking for clock_gettime in -lrt... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for yaggo... /usr/bin/yaggo checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for jellyfish-2.0... yes checking for jellyfish... /usr/bin/jellyfish checking for __int128... yes checking for g++ options needed to detect all undeclared functions... none needed checking whether strerror_r is declared... yes checking whether strerror_r returns char *... yes checking for _Bool... no checking for stdbool.h that conforms to C99... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -O--no-parallel make -j1 make[1]: Entering directory '/build/quorum-1.1.1' yaggo src/error_correct_reads_cmdline.yaggo src/error_correct_reads_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/error_correct_reads_cmdline.hpp src/error_correct_reads_cmdline.yaggo yaggo src/create_database_cmdline.yaggo src/create_database_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/create_database_cmdline.hpp src/create_database_cmdline.yaggo yaggo src/merge_mate_pairs_cmdline.yaggo src/merge_mate_pairs_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/merge_mate_pairs_cmdline.hpp src/merge_mate_pairs_cmdline.yaggo yaggo src/split_mate_pairs_cmdline.yaggo src/split_mate_pairs_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/split_mate_pairs_cmdline.hpp src/split_mate_pairs_cmdline.yaggo make all-am make[2]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/error_correct_reads.o src/error_correct_reads.cc g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/err_log.o src/err_log.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/create_database.o src/create_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o quorum_create_database src/create_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_create_database src/create_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/merge_mate_pairs.o src/merge_mate_pairs.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o merge_mate_pairs src/merge_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o merge_mate_pairs src/merge_mate_pairs.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/split_mate_pairs.o src/split_mate_pairs.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o split_mate_pairs src/split_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o split_mate_pairs src/split_mate_pairs.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread sed -e 's|[@]JELLYFISH[@]|/usr/bin/jellyfish|g' -e 's|[@]bindir[@]|/build/quorum-1.1.1|g' -e 's|[@]JF_LIB_PATH[@]||g' -e 's|[@]PACKAGE_VERSION[@]|1.1.1|g' -e 's|[@]JELLYFISH_VERSION[@]|2.3.0|g' < src/quorum.in > quorum && chmod a+x quorum mkdir -p data; /usr/bin/jellyfish count -m 24 -s 5k -C -t 10 -o data/adapter.jf data/adapter.fa make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' dh_auto_test -O--no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[1]: Entering directory '/build/quorum-1.1.1' make check-am make[2]: Entering directory '/build/quorum-1.1.1' make all_tests query_mer_database histo_mer_database libgtest.la libgtest_main.la make[3]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/all_tests-test_mer_database.o `test -f 'unit_tests/test_mer_database.cc' || echo './'`unit_tests/test_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest_main.cc -o unit_tests/gtest/src/libgtest_main_la-gtest_main.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo -lrt -lpthread libtool: link: ar cr .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o libtool: link: ranlib .libs/libgtest.a libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la -lrt -lpthread libtool: link: (cd .libs/libgtest_main.lax/libgtest.a && ar x "/build/quorum-1.1.1/./.libs/libgtest.a") libtool: link: ar cr .libs/libgtest_main.a unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o .libs/libgtest_main.lax/libgtest.a/libgtest_la-gtest-all.o libtool: link: ranlib .libs/libgtest_main.a libtool: link: rm -fr .libs/libgtest_main.lax libtool: link: ( cd ".libs" && rm -f "libgtest_main.la" && ln -s "../libgtest_main.la" "libgtest_main.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o all_tests unit_tests/all_tests-test_mer_database.o libgtest_main.la -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o all_tests unit_tests/all_tests-test_mer_database.o ./.libs/libgtest_main.a /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/query_mer_database.o src/query_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o query_mer_database src/query_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o query_mer_database src/query_mer_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.3.0 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -c -o src/histo_mer_database.o src/histo_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z,relro -Wl,-z,now -o histo_mer_database src/histo_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_NUMERIC_LIMITS128 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o histo_mer_database src/histo_mer_database.o /usr/lib/aarch64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread make[3]: 'libgtest.la' is up to date. make[3]: 'libgtest_main.la' is up to date. make[3]: Leaving directory '/build/quorum-1.1.1' make check-TESTS make[3]: Entering directory '/build/quorum-1.1.1' make[4]: Entering directory '/build/quorum-1.1.1' PASS: all_tests ============================================================================ Testsuite summary for quorum 1.1.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/quorum-1.1.1' make[3]: Leaving directory '/build/quorum-1.1.1' make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install --destdir=debian/quorum/ -O--no-parallel make -j1 install DESTDIR=/build/quorum-1.1.1/debian/quorum AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/quorum-1.1.1' make install-am make[2]: Entering directory '/build/quorum-1.1.1' make[3]: Entering directory '/build/quorum-1.1.1' /usr/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c quorum_error_correct_reads quorum_create_database merge_mate_pairs split_mate_pairs '/build/quorum-1.1.1/debian/quorum/usr/bin' libtool: install: /usr/bin/install -c quorum_error_correct_reads /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_error_correct_reads libtool: install: /usr/bin/install -c quorum_create_database /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_create_database libtool: install: /usr/bin/install -c merge_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/merge_mate_pairs libtool: install: /usr/bin/install -c split_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/split_mate_pairs /usr/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin' /usr/bin/install -c .libs/quorum '/build/quorum-1.1.1/debian/quorum/usr/bin' /usr/bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/share' /usr/bin/install -c -m 644 data/adapter.jf '/build/quorum-1.1.1/debian/quorum/usr/share' make[3]: Leaving directory '/build/quorum-1.1.1' make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' debian/rules override_dh_install make[1]: Entering directory '/build/quorum-1.1.1' dh_install mkdir -p debian/quorum/usr/share/quorum mv debian/quorum/usr/share/adapter* debian/quorum/usr/share/quorum sed -i '1s+#! */usr/bin/env perl+#!/usr/bin/perl+' debian/*/usr/bin/* make[1]: Leaving directory '/build/quorum-1.1.1' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'quorum' in '../quorum_1.1.1-7_arm64.deb'. dpkg-deb: building package 'quorum-dbgsym' in '../quorum-dbgsym_1.1.1-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../quorum_1.1.1-7_arm64.buildinfo dpkg-genchanges --build=binary -O../quorum_1.1.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13167 and its subdirectories I: Current time: Wed Jun 19 09:40:04 -12 2024 I: pbuilder-time-stamp: 1718833204 Thu May 18 15:17:06 UTC 2023 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Thu May 18 15:17:06 UTC 2023 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Thu May 18 15:21:35 UTC 2023 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Thu May 18 15:21:36 UTC 2023 I: quorum_1.1.1-7_arm64.changes: Format: 1.8 Date: Mon, 25 Jul 2022 09:38:18 +0200 Source: quorum Binary: quorum quorum-dbgsym Architecture: arm64 Version: 1.1.1-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: quorum - QUality Optimized Reads of genomic sequences Closes: 1013026 Changes: quorum (1.1.1-7) unstable; urgency=medium . * Fix build with gcc-12 Closes: #1013026 * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 2f32b7f8e0021f399df3db466210e64c4b4f5ba6 836376 quorum-dbgsym_1.1.1-7_arm64.deb f716808553dfcd56bc6713bfe07516164dc835c9 6312 quorum_1.1.1-7_arm64.buildinfo 90fc9438eb2e007e3d51dbe9b8ff1e3027a15e27 108516 quorum_1.1.1-7_arm64.deb Checksums-Sha256: a228c3aa98971c2c54bc7497a7a79cda060f201d97ae63bd197356bed0a1a386 836376 quorum-dbgsym_1.1.1-7_arm64.deb d55ae8fcd5b439b819927982e23693aaa2cddedba90f2b59562f3e92c76e6187 6312 quorum_1.1.1-7_arm64.buildinfo 4d466448395468174b7a41709a67927ab62f5751f2980a3d5a5c2714ceaa2aa2 108516 quorum_1.1.1-7_arm64.deb Files: c9d7b8344bb2b83a8099f4c9bf56fe41 836376 debug optional quorum-dbgsym_1.1.1-7_arm64.deb 1bba5a1d9bb736e24a452a5ff2d97b62 6312 science optional quorum_1.1.1-7_arm64.buildinfo a2bc9ad126322e9536132ed6ccaa724c 108516 science optional quorum_1.1.1-7_arm64.deb Thu May 18 15:21:37 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/quorum_1.1.1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/quorum_1.1.1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/quorum_1.1.1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/b1/quorum_1.1.1-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.LYrinIKm/b2/quorum_1.1.1-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.354s) 0.354s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 18 15:21:38 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 18 15:21:38 UTC 2023 I: quorum from bookworm built successfully and reproducibly on arm64. Thu May 18 15:21:40 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 18 15:21:40 UTC 2023 I: Submitting 8.0K b1/quorum_1.1.1-7_arm64.buildinfo.asc Thu May 18 15:21:41 UTC 2023 I: Submitting 8.0K b2/quorum_1.1.1-7_arm64.buildinfo.asc Thu May 18 15:21:42 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 18 15:21:42 UTC 2023 I: Done submitting .buildinfo files. Thu May 18 15:21:42 UTC 2023 I: Removing signed quorum_1.1.1-7_arm64.buildinfo.asc files: removed './b1/quorum_1.1.1-7_arm64.buildinfo.asc' removed './b2/quorum_1.1.1-7_arm64.buildinfo.asc'