Fri May 31 20:15:19 UTC 2024 I: starting to build shovill/bookworm/arm64 on jenkins on '2024-05-31 20:15' Fri May 31 20:15:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/46808/console.log Fri May 31 20:15:19 UTC 2024 I: Downloading source for bookworm/shovill=1.1.0-9 --2024-05-31 20:15:20-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/shovill/shovill_1.1.0-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2065 (2.0K) [text/prs.lines.tag] Saving to: ‘shovill_1.1.0-9.dsc’ 0K .. 100% 321M=0s 2024-05-31 20:15:20 (321 MB/s) - ‘shovill_1.1.0-9.dsc’ saved [2065/2065] Fri May 31 20:15:20 UTC 2024 I: shovill_1.1.0-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: shovill Binary: shovill, shovill-examples Architecture: any all Version: 1.1.0-9 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/tseemann/shovill Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/shovill Vcs-Git: https://salsa.debian.org/med-team/shovill.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Arch: spades, skesa, megahit Package-List: shovill deb science optional arch=any shovill-examples deb science optional arch=all Checksums-Sha1: ff674f771dd46d766ee38d7d019b019160412d52 6252102 shovill_1.1.0.orig.tar.gz 010a7ff3692f58ee3d2b17a1261f3c2ed3cf949e 5768 shovill_1.1.0-9.debian.tar.xz Checksums-Sha256: b7323e6586238821202cf9644963e584e7397a5cee23e564d00b07fcb344ecd2 6252102 shovill_1.1.0.orig.tar.gz 4dcde0147b7ebabb22b827280fdbaad6a05bfaa3621012119280b28ccd8374c0 5768 shovill_1.1.0-9.debian.tar.xz Files: 1e988851741ece73311ff1fddb412172 6252102 shovill_1.1.0.orig.tar.gz f2ed89093cc36918d0b0c1eca690f42f 5768 shovill_1.1.0-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOChCgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEXhQ/+JX/XXakT5MVdkY6x6esXCZp8wfhJVNy9 GXQuCru4pHdoZzEPEHEX23ELnHO+Q3z8D1pQ7MR5Y3Vw5gE4L58+jkA0P03TWv1Z oVJLHrX7X+XzxQ7I5ifwqnDUQVSQLqlwsmwOY0GoX+kUfKQgA624bzY9FMTztulD iv6Tv2I30M1fv7v0GxSZpEaf9Ipejrq8A+/jhpWNik4Cx+NcE+vJSbaH+/RWaJaZ /7EFqwdiI4+wtMOFf7RrUD2SeGmmV8DozLL+NZxAFoFO02FMHughBadXY4AVWTtV KmNupoPPCZ/uAUAIaGkjoEgS7VY1pOnD7sY8WxEOJDhwIK9K0E7QyrlF2ARAyHmZ wzACPQ9oHetbvDHwSkYDx8SNyAImKkQwv9WMwsYrdb6IjRM7+nwyeBllzMgWs/Dq JyimY5Jh6duTSGskuftmdCbZFerKGgMIoejpSC7T63Tol3gUbE1kbEzoMcoPwzDJ 3SD0X9T50sZrl1xMgbOh3gn5ZG7Khv47e38zuEf7iMUgWIl+gCceNTevex4daMWg xOieY3WNEDqXYmX6WbrVqjDCVmlohWvMhSSDsSURxr7vh2kwCCPxIb0DXW6NwC99 ZaPWqonkZIqi+qskmK/BtkplbwQv1gqzpdwpqP02QKXkzTolwOFkUE2fEf/JHcIq 6mfRYwFKLlE= =OzsJ -----END PGP SIGNATURE----- Fri May 31 20:15:20 UTC 2024 I: Checking whether the package is not for us Fri May 31 20:15:20 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri May 31 20:15:20 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri May 31 20:15:39 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 3 14:38:21 -12 2025 I: pbuilder-time-stamp: 1751596701 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [shovill_1.1.0-9.dsc] I: copying [./shovill_1.1.0.orig.tar.gz] I: copying [./shovill_1.1.0-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 26 09:24:56 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./shovill_1.1.0-9.dsc: no acceptable signature found dpkg-source: info: extracting shovill in shovill-1.1.0 dpkg-source: info: unpacking shovill_1.1.0.orig.tar.gz dpkg-source: info: unpacking shovill_1.1.0-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-shebang.patch dpkg-source: info: applying adapter_commandline_arg.patch dpkg-source: info: applying fix-executable-names.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1912868/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='d89f39a3eb354cfeb20c13b7cd101722' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1912868' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TgpcYkVC/pbuilderrc_HgHX --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TgpcYkVC/b1 --logfile b1/build.log shovill_1.1.0-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Apr 23 2023 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Mar 22 2023 more -rwsr-xr-x 1 root root 67744 Mar 22 2023 mount -rwxr-xr-x 1 root root 67744 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Mar 22 2023 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Mar 22 2023 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1912868/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), spades, skesa, megahit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19578 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on spades; however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on skesa; however: Package skesa is not installed. pbuilder-satisfydepends-dummy depends on megahit; however: Package megahit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libboost-chrono1.74.0{a} libboost-program-options1.74.0{a} libboost-regex1.74.0{a} libboost-timer1.74.0{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncbi-vdb3{a} libngs-c++3{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} ncbi-vdb-data{a} po-debconf{a} sensible-utils{a} skesa{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 91.4 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades which is a virtual package and is not provided by any available package Depends: megahit which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libboost-chrono1.74.0{a} libboost-program-options1.74.0{a} libboost-regex1.74.0{a} libboost-timer1.74.0{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncbi-vdb3{a} libngs-c++3{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} ncbi-vdb-data{a} po-debconf{a} sensible-utils{a} skesa{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 21.7 MB of archives. After unpacking 91.4 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1912868 and its subdirectories Fri May 31 20:15:40 UTC 2024 W: No second build log, what happened? Fri May 31 20:15:40 UTC 2024 W: Downloading the build dependencies failed Fri May 31 20:15:40 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri May 31 20:15:40 UTC 2024 W: Network problems are automatically rescheduled after some hours.