Fri May 5 06:05:22 UTC 2023 I: starting to build baitfisher/bookworm/armhf on jenkins on '2023-05-05 06:04' Fri May 5 06:05:22 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_26/3932/console.log Fri May 5 06:05:22 UTC 2023 I: Downloading source for bookworm/baitfisher=1.2.7+git20211020.de26d5c+dfsg-1 --2023-05-05 06:05:22-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/baitfisher/baitfisher_1.2.7%2bgit20211020.de26d5c%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2207 (2.2K) [text/prs.lines.tag] Saving to: ‘baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc’ 0K .. 100% 238M=0s 2023-05-05 06:05:22 (238 MB/s) - ‘baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc’ saved [2207/2207] Fri May 5 06:05:22 UTC 2023 I: baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: baitfisher Binary: baitfisher Architecture: any Version: 1.2.7+git20211020.de26d5c+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/cmayer/BaitFisher-package Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/baitfisher Vcs-Git: https://salsa.debian.org/med-team/baitfisher.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man, libtclap-dev, debhelper Package-List: baitfisher deb science optional arch=any Checksums-Sha1: f0cae180075c9828b1be29d86fe0ccdf52477e84 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz dd97ea2367b2a5b4180f2a7befd665d5a8c39f04 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz Checksums-Sha256: 18173901d19d48a42d2f73d43f20fcbe7e9a7bc7be0d085cf396b9e06dae8103 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz 49509da2d04fab1652eefface87d35909767be86e14f5c7911a56147d5228e4b 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz Files: ea5113239392acc66501bb398a69a45d 3454988 baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz 5b8c24f27d1c2cee82497f185822079c 4828 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHjyAMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFdvA//Req8A8j+tQvY3xW+fGtZFJ4POl6V730b zrUZocHnRS304pI9ITFbNU1H1QOGuNt2BiiY98ZiTdH2r8SD2B/MYR1tzbRut38D O4UB/fVROljYebNL6wgC+UlMOHNT3zvL4gxJ2434ppJ50aZz6mYhS3mhXsn0tZ3W hHLzU/y4xpxSP5JXRuICrrblfqBr/a3Fcm1v7RMoDJW8wvLo+HV0N3RDsfT678ca gE54I/OqlcElctL4xKOpamvirHfZgPINyti19v61G/nbqvCITvB3wmmBvPwPkqIb t8m0yIqC5douWBdscWBi0+sz10Cuvo/Y3MLc/0nECz4qKBjiy9wZH9S90GtZuc/U FZSaQRC7AQYfBpXt9+iuX//qDGeaTWQ8v4PFH3alE2Y0cOZBmIwq60hC7Ae+nJek TuFAF5bB9Gwr9rT0Ly9ebXeou0zrCSd8eIRtMbG5l8oRiq3mOeqajU0ag9xKg5n1 mVGOOoGxjdTU8ClwKI1GOihbun2ZXAyDl5ajuniyg/lYwXd+VE7DPsRHs0loL3xm I/7sZl3ZOzgABveawxjLGLdYdMcSH/dmFbZr+vgMLCjfNWABZBqBnLouvFT3cjHZ z8SYHji6AyXRp51h2sdVPxJXIz4m+tKUBlTkB5ZEOwT5gEWOdizO8kNwfJjKhJhU II8PRlSY/KI= =WH+G -----END PGP SIGNATURE----- Fri May 5 06:05:22 UTC 2023 I: Checking whether the package is not for us Fri May 5 06:05:22 UTC 2023 I: Starting 1st build on remote node jtx1a-armhf-rb.debian.net. Fri May 5 06:05:22 UTC 2023 I: Preparing to do remote build '1' on jtx1a-armhf-rb.debian.net. Fri May 5 06:11:52 UTC 2023 I: Deleting $TMPDIR on jtx1a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 4 18:05:35 -12 2023 I: pbuilder-time-stamp: 1683266735 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc] I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz] I: copying [./baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jan 15 19:23:47 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting baitfisher in baitfisher-1.2.7+git20211020.de26d5c+dfsg dpkg-source: info: unpacking baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz dpkg-source: info: unpacking baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_example.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28601/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='84828db928514e8db5edb16ad793ae01' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28601' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/pbuilderrc_GzaQ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/b1 --logfile b1/build.log baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux jtx1a 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/28601/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, libtclap-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 21.6 MB of archives. After unpacking 83.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf liblocale-gettext-perl armhf 1.07-5 [14.9 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 22 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf help2man armhf 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] Fetched 21.6 MB in 2s (9525 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../03-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/baitfisher-1.2.7+git20211020.de26d5c+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_source.changes dpkg-buildpackage: info: source package baitfisher dpkg-buildpackage: info: source version 1.2.7+git20211020.de26d5c+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' rm -f *.o rm -f BaitFisher-v1.2.8 rm -f BaitFilter-v1.0.6 make[1]: Leaving directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher-helper.cpp -o bait-fisher-helper.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-fisher.cpp -o bait-fisher.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Csequence_cluster_and_center_sequence.cpp -o Csequence_cluster_and_center_sequence.o In file included from bait-fisher-helper.cpp:31: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ In file included from CSequences2.h:42, from bait-fisher-helper.cpp:32: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ In file included from CSequence_Mol2_1.h:50, from GFF-class.h:34, from bait-fisher.cpp:30: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ In file included from CSequence_Mol2_1.h:50, from CSequences2.h:42, from Csequence_cluster_and_center_sequence.h:44, from Csequence_cluster_and_center_sequence.cpp:27: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from faststring2.h:38, from Csequence_cluster_and_center_sequence.h:36: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {cluster_node}; _Tp = cluster_node; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/set:60, from Csequence_cluster_and_center_sequence.h:31: /usr/include/c++/12/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_tree.h: In member function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {std::pair}; _Key = long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/map:61, from statistic_functions.h:33, from Csequence_cluster_and_center_sequence.h:39: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair}; _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'std::__enable_if_t, _Pair>::value, std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair; _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_map.h:858:27, inlined from 'void CDistance_Cluster::add(short int, short int, double)' at CDistance_matrix.h:333:26, inlined from 'void call_back_distance(short int, short int, double)' at Csequence_cluster_and_center_sequence.cpp:41:30, inlined from 'void call_back_distance(short int, short int, double)' at Csequence_cluster_and_center_sequence.cpp:36:6: /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type 'std::map::const_iterator' {aka 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator'} changed in GCC 7.1 638 | return _M_t._M_emplace_hint_unique(__pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 639 | std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:465:66: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:471:41: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:489:56: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:490:56: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {std::pair}; _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'std::__enable_if_t, _Pair>::value, std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> > std::map<_Key, _Tp, _Compare, _Alloc>::insert(_Pair&&) [with _Pair = std::pair; _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]' at /usr/include/c++/12/bits/stl_map.h:858:27, inlined from 'void CDistance_Cluster::add_partial(short int, short int, double)' at CDistance_matrix.h:356:26, inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:502:15: /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type 'std::map::const_iterator' {aka 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator'} changed in GCC 7.1 638 | return _M_t._M_emplace_hint_unique(__pos, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 639 | std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:505:41: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]', inlined from 'void CDistance_Cluster::run_clustering(double)' at CDistance_matrix.h:506:41: /usr/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mydir-unix.cpp -o mydir-unix.o In file included from /usr/include/c++/12/vector:70, from faststring2.h:38, from bait-fisher.cpp:28: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bait-filter.cpp -o bait-filter.o /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from CBlastParser.h:47, from CBaitRecord.h:37, from bait-filter.cpp:33: CFile/CFile2_1.h: In member function 'char CFile::getchar()': CFile/CFile2_1.h:256:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 256 | register char c; | ^ In file included from CSeqNameList.h:38, from CBlastParser.h:52: CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&)': CSequence_Mol2_1.h:283:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 283 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine(CFile&, unsigned int&)': CSequence_Mol2_1.h:300:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 300 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getRawLine_toupper(CFile&)': CSequence_Mol2_1.h:321:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 321 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:340:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 340 | register char c; | ^ CSequence_Mol2_1.h:342:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 342 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c global-types-and-parameters.cpp -o global-types-and-parameters.o CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:424:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 424 | register char c; | ^ CSequence_Mol2_1.h:425:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 425 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:426:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 426 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:429:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 429 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:430:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 430 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:431:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 431 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:432:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 432 | register bool removestars_bool = (pflag & removestars); // handled | ^~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:433:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 433 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig); // handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_generic(CFile&, unsigned int&, processing_flag)': CSequence_Mol2_1.h:571:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 571 | register char c; | ^ CSequence_Mol2_1.h:572:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 572 | register char c_upper; | ^~~~~~~ CSequence_Mol2_1.h:573:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 573 | register char local_general_ambig = general_ambig; | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:578:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 578 | register bool convert_toupper_bool = (pflag & convert_toupper); // handled | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:580:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 580 | register bool removegaps_bool = (pflag & removegaps); // handled | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:582:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 582 | register bool gaps_to_ambig_bool = (pflag & gaps_to_ambig);// handled | ^~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:685:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 685 | register char c; | ^ CSequence_Mol2_1.h:687:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 687 | register char local_general_ambig = toupper(general_ambig); | ^~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfProtein_toupper_removegaps(CFile&, unsigned int&)': CSequence_Mol2_1.h:764:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 764 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::getLineOfDNA_toupper_ambig2N_gaps2ambig(CFile&)': CSequence_Mol2_1.h:825:30: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 825 | register char c; | ^ CSequence_Mol2_1.h: In member function 'void CSequence_Mol::readFastaSequence_generic(CFile&, processing_flag)': CSequence_Mol2_1.h:2625:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2625 | register bool convert_toupper_bool = (pflag & convert_toupper); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2626:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2626 | register bool convert_ambig2N_bool = (pflag & convert_ambig2N); // | ^~~~~~~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2627:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2627 | register bool removegaps_bool = (pflag & removegaps); // | ^~~~~~~~~~~~~~~ CSequence_Mol2_1.h:2628:21: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 2628 | register bool removestars_bool = (pflag & removestars); // | ^~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void CSeqNameList::add_unchecked(const faststring&, unsigned int, double, unsigned int, unsigned int)' at CSeqNameList.h:91:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'unsigned int Csequence_loci_cluster_collection::append_center_sequences(std::vector&, std::vector&, std::vector&)' at Csequence_cluster_and_center_sequence.h:424:20, inlined from 'void CBait_region_information::get_vector_of_bait_sequences(std::vector&, std::vector&, std::vector&, std::vector&)' at Csequence_cluster_and_center_sequence.h:501:64: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/12/bits/stl_vector.h:1294:21, inlined from 'unsigned int Csequence_loci_cluster_collection::append_center_sequences(std::vector&, std::vector&, std::vector&)' at Csequence_cluster_and_center_sequence.h:428:25, inlined from 'void CBait_region_information::get_vector_of_bait_sequences(std::vector&, std::vector&, std::vector&, std::vector&)' at Csequence_cluster_and_center_sequence.h:501:64: /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-fisher-helper.o bait-fisher.o Csequence_cluster_and_center_sequence.o mydir-unix.o -o BaitFisher-v1.2.8 g++ -I . -O3 -g -O2 -ffile-prefix-map=/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -lstdc++ bait-filter.o global-types-and-parameters.o -o BaitFilter-v1.0.6 make[1]: Leaving directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/baitfisher/ debian/rules override_dh_install make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' cp BaitFilter-v* debian/baitfisher/usr/bin/BaitFilter cp BaitFisher-v* debian/baitfisher/usr/bin/BaitFisher dh_install for sh in `grep -Rl '#!/usr/bin/bash' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/bash?#!/bin/bash?' ${sh} ; \ done make[1]: Leaving directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' help2man --no-discard-stderr -o BaitFilter.1 ./BaitFilter-v* help2man --no-discard-stderr -o BaitFisher.1 ./BaitFisher-v* dh_installman make[1]: Leaving directory '/build/baitfisher-1.2.7+git20211020.de26d5c+dfsg' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/baitfisher/usr/bin/BaitFisher contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/baitfisher/usr/bin/BaitFilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'baitfisher' in '../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb'. dpkg-deb: building package 'baitfisher-dbgsym' in '../baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28601 and its subdirectories I: Current time: Thu May 4 18:11:30 -12 2023 I: pbuilder-time-stamp: 1683267090 Fri May 5 06:11:56 UTC 2023 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net. Fri May 5 06:11:56 UTC 2023 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net. Fri May 5 06:29:11 UTC 2023 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. Fri May 5 06:29:13 UTC 2023 I: baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.changes: Format: 1.8 Date: Sun, 16 Jan 2022 08:18:11 +0100 Source: baitfisher Binary: baitfisher baitfisher-dbgsym Architecture: armhf Version: 1.2.7+git20211020.de26d5c+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: baitfisher - software package for designing hybrid enrichment probes Changes: baitfisher (1.2.7+git20211020.de26d5c+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: 684ca533d5253de91f10fc3acbd04d5fbc1fb887 1822256 baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb d9d118f187cf1dbc69fc8169f108602b617dfe7e 5281 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo ef89f3213c85056d472767c5b1cf42ab9663e13d 174020 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb Checksums-Sha256: b0d7db97216b48c04f434ee76c570670ec1d3198ef9582dffb067d24c4e9e1f6 1822256 baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb 35b7d2c4d93573556afb006b6d8641abb37d283f6b3b4e35b431b936a7f9e548 5281 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo f7d24880f6a0bde6cb20bf4cdb99b82f1bfd7277c0d07c9e14f693bae12a9bd6 174020 baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb Files: e8b9a71572c8caa696ba240fc1d1a4f1 1822256 debug optional baitfisher-dbgsym_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb db57aede16039f113b60e68d2907f4b0 5281 science optional baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo a3239e8e8cb846647023ddba2d875f99 174020 science optional baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.deb Fri May 5 06:29:14 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.tyqxk1PI/b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.431s) 0.431s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.045s) 0.045s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Fri May 5 06:29:15 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Fri May 5 06:29:15 UTC 2023 I: baitfisher from bookworm built successfully and reproducibly on armhf. Fri May 5 06:29:16 UTC 2023 I: Submitting .buildinfo files to external archives: Fri May 5 06:29:16 UTC 2023 I: Submitting 8.0K b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo.asc Fri May 5 06:29:18 UTC 2023 I: Submitting 8.0K b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo.asc Fri May 5 06:29:18 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 5 06:29:18 UTC 2023 I: Done submitting .buildinfo files. Fri May 5 06:29:18 UTC 2023 I: Removing signed baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo.asc files: removed './b1/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo.asc' removed './b2/baitfisher_1.2.7+git20211020.de26d5c+dfsg-1_armhf.buildinfo.asc'