Mon Mar 4 08:41:42 UTC 2024 I: starting to build cctbx/bookworm/armhf on jenkins on '2024-03-04 08:41' Mon Mar 4 08:41:42 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/351/console.log Mon Mar 4 08:41:42 UTC 2024 I: Downloading source for bookworm/cctbx=2022.9+ds2+~3.11.2+ds1-6 --2024-03-04 08:41:43-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cctbx/cctbx_2022.9%2bds2%2b%7e3.11.2%2bds1-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3126 (3.1K) [text/prs.lines.tag] Saving to: ‘cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc’ 0K ... 100% 392M=0s 2024-03-04 08:41:43 (392 MB/s) - ‘cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc’ saved [3126/3126] Mon Mar 4 08:41:43 UTC 2024 I: cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cctbx Binary: libcctbx0, libcctbx-dev, python3-cctbx Architecture: amd64 arm64 armel armhf i386 ppc64 ppc64el riscv64 s390x Version: 2022.9+ds2+~3.11.2+ds1-6 Maintainer: Debian Science Maintainers Uploaders: Neil Williams , Picca Frédéric-Emmanuel , Radostan Riedel , Homepage: https://github.com/cctbx/cctbx_project Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/science-team/cctbx Vcs-Git: https://salsa.debian.org/science-team/cctbx.git Testsuite: autopkgtest Testsuite-Triggers: bitshuffle, python3-all, python3-dials-data, python3-h5py, python3-pytest, python3-pytest-mock Build-Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-future, python3-h5py (>= 3) , python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest , python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm , python3-wxgtk4.0, rsync, scons Package-List: libcctbx-dev deb devel optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x libcctbx0 deb libs optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x python3-cctbx deb python optional arch=amd64,arm64,armel,armhf,i386,ppc64,ppc64el,riscv64,s390x Checksums-Sha1: b65df378da4d690dadeb9aec43557816cf1f59b2 342152 cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz 5d9e4d77895be93c8ba5cd14cc65c784918149aa 22514088 cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz 0d2a3c6409ca8342cb834a9a341f59c52be416eb 418296 cctbx_2022.9+ds2+~3.11.2+ds1-6.debian.tar.xz Checksums-Sha256: 7b3d6b681b9806248f448c01a9f34c49506fcce1178360eb9d474bccbb0d2e91 342152 cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz 406a624844f87f4405daf94b430e88beb2c9a3a642ad4ba8cf683a8ffa0418c4 22514088 cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz 94c125f3bbdc5e48e146f3a7a8f0ba4c561be6341ef27af93665544d93897ae7 418296 cctbx_2022.9+ds2+~3.11.2+ds1-6.debian.tar.xz Files: 1ed214a6fe49b091058eebd61b742665 342152 cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz 879af157c2844c0132e7f84359b0f5b1 22514088 cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz 4a862795c34537618c83d6d27b06d9db 418296 cctbx_2022.9+ds2+~3.11.2+ds1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIoEARYKADIWIQTumtb5BSD6EfafSCRHew2wJjpU2AUCY7rS9hQcc3RlZmFub3JA ZGViaWFuLm9yZwAKCRBHew2wJjpU2H4jAP9HqlinzZ4shQi+EFrf+nPvAZDw3Ea+ coc5ye0A9ZVVMQEAuBatjdxIUrJDfYKezM61k8M4D83qw/RRae5D7/zT8wM= =IxLr -----END PGP SIGNATURE----- Mon Mar 4 08:41:43 UTC 2024 I: Checking whether the package is not for us Mon Mar 4 08:41:43 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Mon Mar 4 08:41:43 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Mon Mar 4 08:52:56 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 3 20:41:56 -12 2024 I: pbuilder-time-stamp: 1709541716 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc] I: copying [./cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz] I: copying [./cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz] I: copying [./cctbx_2022.9+ds2+~3.11.2+ds1-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 8 02:28:06 2023 -12 gpgv: using EDDSA key EE9AD6F90520FA11F69F4824477B0DB0263A54D8 gpgv: issuer "stefanor@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc: no acceptable signature found dpkg-source: info: extracting cctbx in cctbx-2022.9+ds2+~3.11.2+ds1 dpkg-source: info: unpacking cctbx_2022.9+ds2+~3.11.2+ds1.orig.tar.xz dpkg-source: info: unpacking cctbx_2022.9+ds2+~3.11.2+ds1.orig-dxtbx.tar.xz dpkg-source: info: unpacking cctbx_2022.9+ds2+~3.11.2+ds1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying workaround_env_config.patch dpkg-source: info: applying boost_adaptbx.patch dpkg-source: info: applying reproducible-timestamp.patch dpkg-source: info: applying libtbx_env-per-python-version.patch dpkg-source: info: applying iotbx_with_system_libraries.patch dpkg-source: info: applying 0007-iotbx-mtz-load-ccp4-data-from-the-right-directory.patch dpkg-source: info: applying 0009-scons-soname.patch dpkg-source: info: applying 0010-fix-cbflib_adaptbx-compilation-with-the-system-cbfli.patch dpkg-source: info: applying 0011-dxtbx-use-the-system-libraries.patch dpkg-source: info: applying 0012-dxtbx-remove-hdf5plugin.patch dpkg-source: info: applying 0013-dxtbx-do-not-modify-the-HDF5_PLUGIN_PATH.patch dpkg-source: info: applying 0015-dxtbx-adapte-the-boost_python-link-name.patch dpkg-source: info: applying 0016-cctbx-avoid-FTBFS-when-cctbx-is-already-installed.patch dpkg-source: info: applying 0017-cctbx-do-not-hide-sign-comparison.patch dpkg-source: info: applying 0017-dxtbx-fix-for-unsigned-char-arch.patch dpkg-source: info: applying 0016-unactivated-ucif-compilation.patch dpkg-source: info: applying 0017-smtbx-save-the-generated-test-file-under-tmp.patch dpkg-source: info: applying 0018-iotbx-link-with-ccp4c-instead-of-ccp4io.patch dpkg-source: info: applying 0019-cbflib_adapter-link-cbf-private-with-cbf.patch dpkg-source: info: applying 0020-spotfinder-link-with-dxtbxspotfinder.patch dpkg-source: info: applying 0021-rstbx-link-with-ann_adaptor.patch dpkg-source: info: applying 0022-rstbx-link-rstbx_integration_ext-with-ann_adaptor.patch dpkg-source: info: applying 0023-rstbx-use-the-annself_excluded-namespace-from-ann-cc.patch dpkg-source: info: applying 0024-more-ann-ann-cctbx.patch dpkg-source: info: applying 0025-Stop-importing-pip-use-subprocesses-instead.-Fixes-7.patch dpkg-source: info: applying 0026-Use-the-python3-binary.patch dpkg-source: info: applying 0027-cctbx-add-__getstate_manages_dict__-for-Python-3.11.patch dpkg-source: info: applying 0028-libtbx-update-test-for-Python-3.11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3191/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='6e652d5de7eb48b48d7c00815d080ea0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3191' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GWgqLrws/pbuilderrc_A87F --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GWgqLrws/b1 --logfile b1/build.log cctbx_2022.9+ds2+~3.11.2+ds1-6.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin total 4964 -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 2023 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 2023 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 2023 more -rwsr-xr-x 1 root root 38496 Mar 22 2023 mount -rwxr-xr-x 1 root root 9824 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 2023 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Jan 19 21:27 tar -rwxr-xr-x 1 root root 9800 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 2023 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3191/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-exec, dh-python, dh-sequence-numpy3, dh-sequence-python3, jq, libann-cctbx-dev (>= 1.1.2+doc-9~), libantlr3c-dev, libboost-dev, libboost-numpy-dev, libboost-python-dev, libboost-thread-dev, libcbf-dev (>= 0.9.7+dfsg1-2~), libclipper-dev, libeigen3-dev, libexpat1-dev, libfftw3-dev, libgl-dev, libglu1-mesa-dev, libhdf5-dev, liblz4-dev, libssm-dev, libtiff-dev, libtool, pybind11-dev, python3-all-dev:any, python3-biopython, python3-future, python3-h5py (>= 3), python3-matplotlib, python3-mrcfile, python3-msgpack, python3-numpy, python3-pint, python3-pip, python3-procrunner, python3-psutil, python3-pycbf (>= 0.9.7+dfsg1-2~), python3-pymol, python3-pytest, python3-requests, python3-scipy, python3-setuptools, python3-six, python3-tqdm, python3-wxgtk4.0, rsync, scons dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19288 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on jq; however: Package jq is not installed. pbuilder-satisfydepends-dummy depends on libann-cctbx-dev (>= 1.1.2+doc-9~); however: Package libann-cctbx-dev is not installed. pbuilder-satisfydepends-dummy depends on libantlr3c-dev; however: Package libantlr3c-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-numpy-dev; however: Package libboost-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libcbf-dev (>= 0.9.7+dfsg1-2~); however: Package libcbf-dev is not installed. pbuilder-satisfydepends-dummy depends on libclipper-dev; however: Package libclipper-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libexpat1-dev; however: Package libexpat1-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgl-dev; however: Package libgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglu1-mesa-dev; however: Package libglu1-mesa-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on libssm-dev; however: Package libssm-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. pbuilder-satisfydepends-dummy depends on libtool; however: Package libtool is not installed. pbuilder-satisfydepends-dummy depends on pybind11-dev; however: Package pybind11-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py (>= 3); however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-mrcfile; however: Package python3-mrcfile is not installed. pbuilder-satisfydepends-dummy depends on python3-msgpack; however: Package python3-msgpack is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pint; however: Package python3-pint is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-procrunner; however: Package python3-procrunner is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pycbf (>= 0.9.7+dfsg1-2~); however: Package python3-pycbf is not installed. pbuilder-satisfydepends-dummy depends on python3-pymol; however: Package python3-pymol is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-wxgtk4.0; however: Package python3-wxgtk4.0 is not installed. pbuilder-satisfydepends-dummy depends on rsync; however: Package rsync is not installed. pbuilder-satisfydepends-dummy depends on scons; however: Package scons is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} dmsetup{a} dwz{a} fftw-dev{a} fftw2{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-lato{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hdf5-helpers{a} hicolor-icon-theme{a} intltool-debian{a} jq{a} libaec-dev{a} libaec0{a} libann-cctbx-dev{a} libann-cctbx0{a} libantlr3c-3.4-0{a} libantlr3c-dev{a} libapparmor1{a} libarchive-zip-perl{a} libargon2-1{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-numpy-dev{a} libboost-numpy1.74-dev{a} libboost-numpy1.74.0{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcairo-gobject2{a} libcairo2{a} libcbf-dev{a} libcbf1{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libclipper-dev{a} libclipper2{a} libcolord2{a} libcryptsetup12{a} libcups2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-openssl-dev{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevmapper1.02.1{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1{a} libepoxy0{a} libevdev2{a} libevent-core-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfdisk1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles2{a} libglew2.2{a} libglib2.0-0{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk-3-0{a} libgtk-3-common{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libice6{a} libicu72{a} libimagequant0{a} libinput-bin{a} libinput10{a} libip4tc2{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjq1{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c5{a} libkmod2{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm15{a} liblz4-dev{a} liblzf1{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd4c0{a} libmmdb2-0{a} libmmdb2-dev{a} libmtdev1{a} libmunge2{a} libnetcdf19{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libnotify4{a} libonig5{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmpi3{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpmix2{a} libpng16-16{a} libpopt0{a} libproc2-0{a} libpsl5{a} libpthread-stubs0-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libqt5core5a{a} libqt5dbus5{a} libqt5designer5{a} libqt5gui5{a} libqt5help5{a} libqt5network5{a} libqt5opengl5{a} libqt5printsupport5{a} libqt5sql5{a} libqt5test5{a} libqt5widgets5{a} libqt5xml5{a} libraqm0{a} librdmacm1{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsm6{a} libssh2-1{a} libssl-dev{a} libssm-dev{a} libssm2{a} libsub-override-perl{a} libsystemd-shared{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwxbase3.2-1{a} libwxgtk-gl3.2-1{a} libwxgtk3.2-1{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} ocl-icd-libopencl1{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} pymol-data{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-biopython{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-future{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-mrcfile{a} python3-msgpack{a} python3-numpy{a} python3-opengl{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pint{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-procrunner{a} python3-psutil{a} python3-py{a} python3-pycbf{a} python3-pymol{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.sip{a} python3-pytest{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tqdm{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-wxgtk4.0{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} rsync{a} scons{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} sgml-base{a} shared-mime-info{a} sphinx-rtd-theme-common{a} systemd{a} systemd-sysv{a} tk8.6-blt2.5{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} x11proto-dev{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core chrony curl ibverbs-providers isympy-common javascript-common libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libglut-dev libgtk-3-bin libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 librsvg2-common libsasl2-modules lynx ncbi-blast+ ntpsec openntpd psmisc publicsuffix python-biopython-doc python3-bs4 python3-html5lib python3-olefile python3-pygments qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 440 newly installed, 0 to remove and 0 not upgraded. Need to get 241 MB of archives. After unpacking 1033 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libargon2-1 armhf 0~20171227-0.3+deb12u1 [19.6 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf dmsetup armhf 2:1.02.185-2 [81.9 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libdevmapper1.02.1 armhf 2:1.02.185-2 [125 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libjson-c5 armhf 0.16-2 [40.4 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libcryptsetup12 armhf 2:2.6.1-4~deb12u2 [196 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libfdisk1 armhf 2.38.1-5+b1 [178 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libkmod2 armhf 30+20221128-1 [50.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libapparmor1 armhf 3.0.8-3 [36.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libip4tc2 armhf 1.8.9-2 [16.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libsystemd-shared armhf 252.22-1~deb12u1 [1546 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf systemd armhf 252.22-1~deb12u1 [2936 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf systemd-sysv armhf 252.22-1~deb12u1 [41.9 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libdbus-1-3 armhf 1.14.10-1~deb12u1 [178 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf dbus-bin armhf 1.14.10-1~deb12u1 [103 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf dbus-session-bus-common all 1.14.10-1~deb12u1 [78.2 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf dbus-daemon armhf 1.14.10-1~deb12u1 [169 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf dbus-system-bus-common all 1.14.10-1~deb12u1 [79.3 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf dbus armhf 1.14.10-1~deb12u1 [94.8 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf fonts-lato all 2.0-2.1 [2696 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf mailcap all 3.70+nmu1 [32.0 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf mime-support all 3.66 [10.9 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 32 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libpopt0 armhf 1.19+dfsg-1 [40.2 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf rsync armhf 3.2.7-1 [395 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.11-1~deb12u2 [1386 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libpam-systemd armhf 252.22-1~deb12u1 [203 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [591 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf shared-mime-info armhf 2.2-1 [726 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2+deb12u1 [242 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6+deb12u1 [295 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-1+b1 [124 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf gtk-update-icon-cache armhf 3.24.38-2~deb12u1 [43.1 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf adwaita-icon-theme all 43-1 [5124 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf at-spi2-common all 2.46.0-5 [162 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 82 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2+deb12u2 [695 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf dbus-user-session armhf 1.14.10-1~deb12u1 [78.1 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libdconf1 armhf 0.40.0-4 [36.1 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf dconf-service armhf 0.40.0-4 [27.6 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf dconf-gsettings-backend armhf 0.40.0-4 [23.2 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 106 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 108 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf dh-exec armhf 0.27 [26.8 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130+deb12u1 [104 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-8 [120 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-8 [53.2 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libnl-3-200 armhf 3.7.0-0.2+b1 [55.8 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-200 armhf 3.7.0-0.2+b1 [156 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf libibverbs1 armhf 44.0-2 [53.6 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf librdmacm1 armhf 44.0-2 [60.6 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libfabric1 armhf 1.17.0-3 [385 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf libhwloc15 armhf 2.9.0-1 [127 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libmunge2 armhf 0.5.15-2 [15.7 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf libpciaccess0 armhf 0.17-2 [48.7 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libxnvctrl0 armhf 525.85.05-3~deb12u1 [12.4 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf ocl-icd-libopencl1 armhf 2.3.1-1 [40.1 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf libhwloc-plugins armhf 2.9.0-1 [15.9 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf libpmix2 armhf 4.2.2-1+deb12u1 [552 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libopenmpi3 armhf 4.1.4-3+b1 [1849 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf fftw2 armhf 2.1.5-6 [190 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf fftw-dev armhf 2.1.5-6 [217 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf fontconfig armhf 2.14.1-4 [448 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf hdf5-helpers armhf 1.10.8+repack1-1 [27.9 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libonig5 armhf 6.9.8-1 [168 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf libjq1 armhf 1.6-2.1 [132 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf jq armhf 1.6-2.1 [64.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libaec0 armhf 1.0.6-1+b1 [19.8 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libsz2 armhf 1.0.6-1+b1 [7864 B] Get: 144 http://deb.debian.org/debian bookworm/main armhf libaec-dev armhf 1.0.6-1+b1 [18.1 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libann-cctbx0 armhf 1.1.2+doc-9+b1 [28.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libann-cctbx-dev armhf 1.1.2+doc-9+b1 [42.8 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libantlr3c-3.4-0 armhf 3.4+dfsg-4 [39.3 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libantlr3c-dev armhf 3.4+dfsg-4 [121 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libatk1.0-0 armhf 2.46.0-5 [42.4 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libxi6 armhf 2:1.8-1+b1 [78.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libatspi2.0-0 armhf 2.46.0-5 [65.0 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libatk-bridge2.0-0 armhf 2.46.0-5 [56.5 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libavahi-common-data armhf 0.8-10 [107 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libavahi-common3 armhf 0.8-10 [38.3 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libavahi-client3 armhf 0.8-10 [41.6 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-21 [9508 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libboost-atomic1.74.0 armhf 1.74.0+ds1-21 [220 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libboost-atomic1.74-dev armhf 1.74.0+ds1-21 [221 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libboost-chrono1.74.0 armhf 1.74.0+ds1-21 [224 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf libboost-chrono1.74-dev armhf 1.74.0+ds1-21 [231 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libboost-date-time1.74.0 armhf 1.74.0+ds1-21 [217 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74.0 armhf 1.74.0+ds1-21 [298 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libboost-serialization1.74-dev armhf 1.74.0+ds1-21 [368 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libboost-date-time1.74-dev armhf 1.74.0+ds1-21 [226 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 167 http://deb.debian.org/debian bookworm/main armhf libboost-python1.74.0 armhf 1.74.0+ds1-21 [277 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libboost-numpy1.74.0 armhf 1.74.0+ds1-21 [226 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libboost-numpy1.74-dev armhf 1.74.0+ds1-21 [231 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libboost-numpy-dev armhf 1.74.0.3 [4376 B] Get: 171 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 176 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libboost-python1.74-dev armhf 1.74.0+ds1-21 [304 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf libboost-python-dev armhf 1.74.0.3 [4632 B] Get: 183 http://deb.debian.org/debian bookworm/main armhf libboost-system1.74.0 armhf 1.74.0+ds1-21 [218 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libboost-system1.74-dev armhf 1.74.0+ds1-21 [219 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libboost-thread1.74.0 armhf 1.74.0+ds1-21 [248 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf libboost-thread1.74-dev armhf 1.74.0+ds1-21 [262 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B] Get: 188 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libcairo-gobject2 armhf 1.16.0-7 [111 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1+deb12u1 [62.1 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 199 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10+deb12u5 [351 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf libhdf5-103-1 armhf 1.10.8+repack1-1 [1183 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf libcbf1 armhf 0.9.7+dfsg1-2+b2 [310 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf libhdf5-fortran-102 armhf 1.10.8+repack1-1 [82.1 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-100 armhf 1.10.8+repack1-1 [65.3 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-fortran-100 armhf 1.10.8+repack1-1 [38.8 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf libhdf5-cpp-103-1 armhf 1.10.8+repack1-1 [119 kB] Get: 208 http://deb.debian.org/debian bookworm/main armhf libhdf5-hl-cpp-100 armhf 1.10.8+repack1-1 [25.2 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf libcurl4-openssl-dev armhf 7.88.1-10+deb12u5 [457 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf libssl-dev armhf 3.0.11-1~deb12u2 [2136 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf libhdf5-dev armhf 1.10.8+repack1-1 [2573 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf libcbf-dev armhf 0.9.7+dfsg1-2+b2 [414 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf libccp4-data all 8.0.0-2 [62.3 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf libccp4c0 armhf 8.0.0-2 [75.2 kB] Get: 217 http://deb.debian.org/debian bookworm/main armhf libmmdb2-0 armhf 2.0.22-1 [277 kB] Get: 218 http://deb.debian.org/debian bookworm/main armhf libccp4f0 armhf 8.0.0-2 [194 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf libccp4-dev armhf 8.0.0-2 [42.8 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf sfftw2 armhf 2.1.5-6 [192 kB] Get: 221 http://deb.debian.org/debian bookworm/main armhf libclipper2 armhf 2.1.20201109-1 [1095 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf libmmdb2-dev armhf 2.0.22-1 [92.9 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf sfftw-dev armhf 2.1.5-6 [220 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf libclipper-dev armhf 2.1.20201109-1 [82.6 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf libcolord2 armhf 1.4.6-2.2 [118 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf libcups2 armhf 2.4.2-3+deb12u5 [210 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10+deb12u5 [346 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf libdatrie1 armhf 0.2.13-2+b1 [39.9 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf libdeflate-dev armhf 1.14-1 [48.7 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf libdouble-conversion3 armhf 3.2.1-1 [39.3 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf libdrm-common all 2.4.114-1 [7112 B] Get: 233 http://deb.debian.org/debian bookworm/main armhf libdrm2 armhf 2.4.114-1+b1 [33.0 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf libdrm-amdgpu1 armhf 2.4.114-1+b1 [19.3 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf libdrm-nouveau2 armhf 2.4.114-1+b1 [16.7 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf libdrm-radeon1 armhf 2.4.114-1+b1 [19.3 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf libwayland-server0 armhf 1.21.0-1 [29.3 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf libgbm1 armhf 22.3.6-1+deb12u1 [34.3 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf libglapi-mesa armhf 22.3.6-1+deb12u1 [41.0 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf libwayland-client0 armhf 1.21.0-1 [23.3 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf libx11-xcb1 armhf 2:1.8.4-2+deb12u2 [192 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 246 http://deb.debian.org/debian bookworm/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 250 http://deb.debian.org/debian bookworm/main armhf libegl-mesa0 armhf 22.3.6-1+deb12u1 [93.9 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 256 http://deb.debian.org/debian bookworm/main armhf libepoxy0 armhf 1.5.10-1 [164 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf libevdev2 armhf 1.13.0+dfsg-1 [28.0 kB] Get: 258 http://deb.debian.org/debian bookworm/main armhf libfftw3-double3 armhf 3.3.10-1 [325 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf libfftw3-single3 armhf 3.3.10-1 [516 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf libfftw3-bin armhf 3.3.10-1 [40.8 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf libfftw3-dev armhf 3.3.10-1 [828 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf libglvnd0 armhf 1.6.0-1 [51.9 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 267 http://deb.debian.org/debian bookworm/main armhf libz3-4 armhf 4.8.12-3.1 [6061 kB] Get: 268 http://deb.debian.org/debian bookworm/main armhf libllvm15 armhf 1:15.0.6-4+b1 [20.5 MB] Get: 269 http://deb.debian.org/debian bookworm/main armhf libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 270 http://deb.debian.org/debian bookworm/main armhf libsensors5 armhf 1:3.6.0-7.1 [31.6 kB] Get: 271 http://deb.debian.org/debian bookworm/main armhf libgl1-mesa-dri armhf 22.3.6-1+deb12u1 [5792 kB] Get: 272 http://deb.debian.org/debian bookworm/main armhf libglx-mesa0 armhf 22.3.6-1+deb12u1 [126 kB] Get: 273 http://deb.debian.org/debian bookworm/main armhf libglx0 armhf 1.6.0-1 [32.0 kB] Get: 274 http://deb.debian.org/debian bookworm/main armhf libgl1 armhf 1.6.0-1 [90.6 kB] Get: 275 http://deb.debian.org/debian bookworm/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 276 http://deb.debian.org/debian bookworm/main armhf x11proto-dev all 2022.1-1 [599 kB] Get: 277 http://deb.debian.org/debian bookworm/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 278 http://deb.debian.org/debian bookworm/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 279 http://deb.debian.org/debian bookworm/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 280 http://deb.debian.org/debian bookworm/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 281 http://deb.debian.org/debian bookworm/main armhf libxcb1-dev armhf 1.15-1 [179 kB] Get: 282 http://deb.debian.org/debian bookworm/main armhf libx11-dev armhf 2:1.8.4-2+deb12u2 [775 kB] Get: 283 http://deb.debian.org/debian bookworm/main armhf libglx-dev armhf 1.6.0-1 [15.3 kB] Get: 284 http://deb.debian.org/debian bookworm/main armhf libgl-dev armhf 1.6.0-1 [100 kB] Get: 285 http://deb.debian.org/debian bookworm/main armhf libgles2 armhf 1.6.0-1 [17.3 kB] Get: 286 http://deb.debian.org/debian bookworm/main armhf libglew2.2 armhf 2.2.0-4+b1 [172 kB] Get: 287 http://deb.debian.org/debian bookworm/main armhf libopengl0 armhf 1.6.0-1 [31.7 kB] Get: 288 http://deb.debian.org/debian bookworm/main armhf libglu1-mesa armhf 9.0.2-1.1 [137 kB] Get: 289 http://deb.debian.org/debian bookworm/main armhf libopengl-dev armhf 1.6.0-1 [4932 B] Get: 290 http://deb.debian.org/debian bookworm/main armhf libglu1-mesa-dev armhf 9.0.2-1.1 [177 kB] Get: 291 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 292 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 293 http://deb.debian.org/debian bookworm/main armhf libthai-data all 0.1.29-1 [176 kB] Get: 294 http://deb.debian.org/debian bookworm/main armhf libthai0 armhf 0.1.29-1 [54.3 kB] Get: 295 http://deb.debian.org/debian bookworm/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [188 kB] Get: 296 http://deb.debian.org/debian bookworm/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.9 kB] Get: 297 http://deb.debian.org/debian bookworm/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.3 kB] Get: 298 http://deb.debian.org/debian bookworm/main armhf libwayland-cursor0 armhf 1.21.0-1 [13.4 kB] Get: 299 http://deb.debian.org/debian bookworm/main armhf libwayland-egl1 armhf 1.21.0-1 [8528 B] Get: 300 http://deb.debian.org/debian bookworm/main armhf libxcomposite1 armhf 1:0.4.5-1 [16.1 kB] Get: 301 http://deb.debian.org/debian bookworm/main armhf libxcursor1 armhf 1:1.2.1-1 [37.9 kB] Get: 302 http://deb.debian.org/debian bookworm/main armhf libxdamage1 armhf 1:1.1.6-1 [14.6 kB] Get: 303 http://deb.debian.org/debian bookworm/main armhf libxinerama1 armhf 2:1.1.4-3 [17.4 kB] Get: 304 http://deb.debian.org/debian bookworm/main armhf xkb-data all 2.35.1-1 [764 kB] Get: 305 http://deb.debian.org/debian bookworm/main armhf libxkbcommon0 armhf 1.5.0-1 [94.0 kB] Get: 306 http://deb.debian.org/debian bookworm/main armhf libxrandr2 armhf 2:1.5.2-2+b1 [36.0 kB] Get: 307 http://deb.debian.org/debian bookworm/main armhf libgtk-3-common all 3.24.38-2~deb12u1 [3895 kB] Get: 308 http://deb.debian.org/debian bookworm/main armhf libgtk-3-0 armhf 3.24.38-2~deb12u1 [2423 kB] Get: 309 http://deb.debian.org/debian bookworm/main armhf libgudev-1.0-0 armhf 237-2 [13.2 kB] Get: 310 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 311 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 312 http://deb.debian.org/debian bookworm/main armhf libwacom-common all 2.6.0-1 [58.4 kB] Get: 313 http://deb.debian.org/debian bookworm/main armhf libwacom9 armhf 2.6.0-1 [18.7 kB] Get: 314 http://deb.debian.org/debian bookworm/main armhf libinput-bin armhf 1.22.1-1 [21.3 kB] Get: 315 http://deb.debian.org/debian bookworm/main armhf libmtdev1 armhf 1.1.6-1 [21.9 kB] Get: 316 http://deb.debian.org/debian bookworm/main armhf libinput10 armhf 1.22.1-1 [107 kB] Get: 317 http://deb.debian.org/debian bookworm/main armhf libjbig-dev armhf 2.1-6.1 [27.5 kB] Get: 318 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 319 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 320 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 321 http://deb.debian.org/debian bookworm/main armhf liblerc-dev armhf 4.0.0+ds-2 [154 kB] Get: 322 http://deb.debian.org/debian bookworm/main armhf liblz4-dev armhf 1.9.4-1 [76.6 kB] Get: 323 http://deb.debian.org/debian bookworm/main armhf liblzf1 armhf 3.6-3 [9248 B] Get: 324 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 325 http://deb.debian.org/debian bookworm/main armhf libmd4c0 armhf 0.4.8-1 [40.0 kB] Get: 326 http://deb.debian.org/debian bookworm/main armhf libnetcdf19 armhf 1:4.9.0-3+b1 [424 kB] Get: 327 http://deb.debian.org/debian bookworm/main armhf libnotify4 armhf 0.8.1-1 [27.7 kB] Get: 328 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB] Get: 329 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 330 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 331 http://deb.debian.org/debian bookworm/main armhf libpython3-all-dev armhf 3.11.2-1+b1 [1068 B] Get: 332 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB] Get: 333 http://deb.debian.org/debian bookworm/main armhf libqt5core5a armhf 5.15.8+dfsg-11 [1540 kB] Get: 334 http://deb.debian.org/debian bookworm/main armhf libqt5dbus5 armhf 5.15.8+dfsg-11 [188 kB] Get: 335 http://deb.debian.org/debian bookworm/main armhf libegl1 armhf 1.6.0-1 [28.5 kB] Get: 336 http://deb.debian.org/debian bookworm/main armhf libqt5network5 armhf 5.15.8+dfsg-11 [593 kB] Get: 337 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 338 http://deb.debian.org/debian bookworm/main armhf libxcb-icccm4 armhf 0.4.1-1.1 [26.3 kB] Get: 339 http://deb.debian.org/debian bookworm/main armhf libxcb-util1 armhf 0.4.0-1+b1 [22.2 kB] Get: 340 http://deb.debian.org/debian bookworm/main armhf libxcb-image0 armhf 0.4.0-2 [21.7 kB] Get: 341 http://deb.debian.org/debian bookworm/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get: 342 http://deb.debian.org/debian bookworm/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get: 343 http://deb.debian.org/debian bookworm/main armhf libxcb-shape0 armhf 1.15-1 [106 kB] Get: 344 http://deb.debian.org/debian bookworm/main armhf libxcb-xinerama0 armhf 1.15-1 [105 kB] Get: 345 http://deb.debian.org/debian bookworm/main armhf libxcb-xinput0 armhf 1.15-1 [127 kB] Get: 346 http://deb.debian.org/debian bookworm/main armhf libxcb-xkb1 armhf 1.15-1 [127 kB] Get: 347 http://deb.debian.org/debian bookworm/main armhf libxkbcommon-x11-0 armhf 1.5.0-1 [13.8 kB] Get: 348 http://deb.debian.org/debian bookworm/main armhf libqt5gui5 armhf 5.15.8+dfsg-11 [2616 kB] Get: 349 http://deb.debian.org/debian bookworm/main armhf libqt5widgets5 armhf 5.15.8+dfsg-11 [2099 kB] Get: 350 http://deb.debian.org/debian bookworm/main armhf libqt5xml5 armhf 5.15.8+dfsg-11 [108 kB] Get: 351 http://deb.debian.org/debian bookworm/main armhf libqt5designer5 armhf 5.15.8-2 [2644 kB] Get: 352 http://deb.debian.org/debian bookworm/main armhf libqt5sql5 armhf 5.15.8+dfsg-11 [108 kB] Get: 353 http://deb.debian.org/debian bookworm/main armhf libqt5help5 armhf 5.15.8-2 [130 kB] Get: 354 http://deb.debian.org/debian bookworm/main armhf libqt5opengl5 armhf 5.15.8+dfsg-11 [125 kB] Get: 355 http://deb.debian.org/debian bookworm/main armhf libqt5printsupport5 armhf 5.15.8+dfsg-11 [185 kB] Get: 356 http://deb.debian.org/debian bookworm/main armhf libqt5test5 armhf 5.15.8+dfsg-11 [131 kB] Get: 357 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 358 http://deb.debian.org/debian bookworm/main armhf libssm2 armhf 1.4.0-2 [66.8 kB] Get: 359 http://deb.debian.org/debian bookworm/main armhf libssm-dev armhf 1.4.0-2 [15.0 kB] Get: 360 http://deb.debian.org/debian bookworm/main armhf libzstd-dev armhf 1.5.4+dfsg2-5 [314 kB] Get: 361 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2+deb12u1 [106 kB] Get: 362 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2+deb12u1 [98.4 kB] Get: 363 http://deb.debian.org/debian bookworm/main armhf libwebp-dev armhf 1.2.4-0.2+deb12u1 [349 kB] Get: 364 http://deb.debian.org/debian bookworm/main armhf libtiffxx6 armhf 4.5.0-6+deb12u1 [144 kB] Get: 365 http://deb.debian.org/debian bookworm/main armhf libtiff-dev armhf 4.5.0-6+deb12u1 [434 kB] Get: 366 http://deb.debian.org/debian bookworm/main armhf libwxbase3.2-1 armhf 3.2.2+dfsg-2 [849 kB] Get: 367 http://deb.debian.org/debian bookworm/main armhf libxtst6 armhf 2:1.2.3-1.1 [26.2 kB] Get: 368 http://deb.debian.org/debian bookworm/main armhf libwxgtk3.2-1 armhf 3.2.2+dfsg-2 [3867 kB] Get: 369 http://deb.debian.org/debian bookworm/main armhf libwxgtk-gl3.2-1 armhf 3.2.2+dfsg-2 [73.9 kB] Get: 370 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 371 http://deb.debian.org/debian bookworm/main armhf pybind11-dev all 2.10.3-1 [186 kB] Get: 372 http://deb.debian.org/debian bookworm/main armhf pymol-data all 2.5.0+dfsg-1 [1401 kB] Get: 373 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 374 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 375 http://deb.debian.org/debian bookworm/main armhf python3-all-dev armhf 3.11.2-1+b1 [1076 B] Get: 376 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB] Get: 377 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 378 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 379 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 380 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB] Get: 381 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB] Get: 382 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-3 [95.4 kB] Get: 383 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB] Get: 384 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 385 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB] Get: 386 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 387 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 388 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB] Get: 389 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB] Get: 390 http://deb.debian.org/debian bookworm/main armhf python3-certifi all 2022.9.24-1 [153 kB] Get: 391 http://deb.debian.org/debian bookworm/main armhf python3-chardet all 5.1.0+dfsg-2 [110 kB] Get: 392 http://deb.debian.org/debian bookworm/main armhf python3-charset-normalizer all 3.0.1-2 [49.3 kB] Get: 393 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB] Get: 394 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B] Get: 395 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 396 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 397 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 398 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 399 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 400 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB] Get: 401 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB] Get: 402 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-4 [30.1 kB] Get: 403 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB] Get: 404 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB] Get: 405 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB] Get: 406 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB] Get: 407 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB] Get: 408 http://deb.debian.org/debian bookworm/main armhf python3-future all 0.18.2-6 [348 kB] Get: 409 http://deb.debian.org/debian bookworm/main armhf python3-h5py-serial armhf 3.7.0-8 [730 kB] Get: 410 http://deb.debian.org/debian bookworm/main armhf python3-h5py all 3.7.0-8 [10.3 kB] Get: 411 http://deb.debian.org/debian bookworm/main armhf python3-idna all 3.3-1 [39.4 kB] Get: 412 http://deb.debian.org/debian bookworm/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 413 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB] Get: 414 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB] Get: 415 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 416 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 417 http://deb.debian.org/debian bookworm/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 418 http://deb.debian.org/debian bookworm/main armhf sphinx-rtd-theme-common all 1.2.0+dfsg-1 [997 kB] Get: 419 http://deb.debian.org/debian bookworm/main armhf python3-mrcfile all 1.4.3-3 [113 kB] Get: 420 http://deb.debian.org/debian bookworm/main armhf python3-msgpack armhf 1.0.3-2+b1 [62.6 kB] Get: 421 http://deb.debian.org/debian bookworm/main armhf python3-opengl all 3.1.6+dfsg-3 [605 kB] Get: 422 http://deb.debian.org/debian bookworm/main armhf python3-pint all 0.19.2-1 [186 kB] Get: 423 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 424 http://deb.debian.org/debian bookworm/main armhf python3-wheel all 0.38.4-2 [30.8 kB] Get: 425 http://deb.debian.org/debian bookworm/main armhf python3-pip all 23.0.1+dfsg-1 [1325 kB] Get: 426 http://deb.debian.org/debian bookworm/main armhf python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 427 http://deb.debian.org/debian bookworm/main armhf python3-procrunner armhf 1.1.0-1 [12.0 kB] Get: 428 http://deb.debian.org/debian bookworm/main armhf python3-psutil armhf 5.9.4-1+b1 [188 kB] Get: 429 http://deb.debian.org/debian bookworm/main armhf python3-py all 1.11.0-1 [89.2 kB] Get: 430 http://deb.debian.org/debian bookworm/main armhf python3-pycbf armhf 0.9.7+dfsg1-2+b2 [149 kB] Get: 431 http://deb.debian.org/debian bookworm/main armhf python3-pyqt5.sip armhf 12.11.1-1 [45.6 kB] Get: 432 http://deb.debian.org/debian bookworm/main armhf python3-pyqt5 armhf 5.15.9+dfsg-1 [1985 kB] Get: 433 http://deb.debian.org/debian bookworm/main armhf python3-pyqt5.qtopengl armhf 5.15.9+dfsg-1 [135 kB] Get: 434 http://deb.debian.org/debian bookworm/main armhf python3-pymol armhf 2.5.0+dfsg-1+b3 [3342 kB] Get: 435 http://deb.debian.org/debian bookworm/main armhf python3-pytest all 7.2.1-2 [236 kB] Get: 436 http://deb.debian.org/debian bookworm/main armhf python3-urllib3 all 1.26.12-1 [117 kB] Get: 437 http://deb.debian.org/debian bookworm/main armhf python3-requests all 2.28.1+dfsg-1 [67.9 kB] Get: 438 http://deb.debian.org/debian bookworm/main armhf python3-tqdm all 4.64.1-1 [97.7 kB] Get: 439 http://deb.debian.org/debian bookworm/main armhf python3-wxgtk4.0 armhf 4.2.0+dfsg-3 [6571 kB] Get: 440 http://deb.debian.org/debian bookworm/main armhf scons all 4.4.0+dfsg-1 [663 kB] Fetched 241 MB in 7s (33.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libargon2-1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19288 files and directories currently installed.) Preparing to unpack .../00-libargon2-1_0~20171227-0.3+deb12u1_armhf.deb ... Unpacking libargon2-1:armhf (0~20171227-0.3+deb12u1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../01-dmsetup_2%3a1.02.185-2_armhf.deb ... Unpacking dmsetup (2:1.02.185-2) ... Selecting previously unselected package libdevmapper1.02.1:armhf. 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Selecting previously unselected package libip4tc2:armhf. Preparing to unpack .../08-libip4tc2_1.8.9-2_armhf.deb ... Unpacking libip4tc2:armhf (1.8.9-2) ... Selecting previously unselected package libsystemd-shared:armhf. Preparing to unpack .../09-libsystemd-shared_252.22-1~deb12u1_armhf.deb ... Unpacking libsystemd-shared:armhf (252.22-1~deb12u1) ... Selecting previously unselected package systemd. Preparing to unpack .../10-systemd_252.22-1~deb12u1_armhf.deb ... Unpacking systemd (252.22-1~deb12u1) ... Setting up libargon2-1:armhf (0~20171227-0.3+deb12u1) ... Setting up libjson-c5:armhf (0.16-2) ... Setting up libfdisk1:armhf (2.38.1-5+b1) ... Setting up libkmod2:armhf (30+20221128-1) ... Setting up libapparmor1:armhf (3.0.8-3) ... Setting up libip4tc2:armhf (1.8.9-2) ... Setting up libsystemd-shared:armhf (252.22-1~deb12u1) ... Setting up libdevmapper1.02.1:armhf (2:1.02.185-2) ... Setting up libcryptsetup12:armhf (2:2.6.1-4~deb12u2) ... Setting up systemd (252.22-1~deb12u1) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service -> /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. Setting up dmsetup (2:1.02.185-2) ... Selecting previously unselected package systemd-sysv. (Reading database ... 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Selecting previously unselected package fonts-lato. Preparing to unpack .../08-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../09-libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../10-python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21096 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package libpopt0:armhf. Preparing to unpack .../001-libpopt0_1.19+dfsg-1_armhf.deb ... Unpacking libpopt0:armhf (1.19+dfsg-1) ... Selecting previously unselected package rsync. Preparing to unpack .../002-rsync_3.2.7-1_armhf.deb ... Unpacking rsync (3.2.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../004-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../007-openssl_3.0.11-1~deb12u2_armhf.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. 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Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package libpam-systemd:armhf. Preparing to unpack .../015-libpam-systemd_252.22-1~deb12u1_armhf.deb ... Unpacking libpam-systemd:armhf (252.22-1~deb12u1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../016-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../017-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../018-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../019-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. 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Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../026-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../027-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../028-libjbig0_2.1-6.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../029-liblerc4_4.0.0+ds-2_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../030-libwebp7_1.2.4-0.2+deb12u1_armhf.deb ... Unpacking libwebp7:armhf (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../031-libtiff6_4.5.0-6+deb12u1_armhf.deb ... Unpacking libtiff6:armhf (4.5.0-6+deb12u1) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:armhf. Preparing to unpack .../032-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1+b1_armhf.deb ... Unpacking libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-1+b1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../033-gtk-update-icon-cache_3.24.38-2~deb12u1_armhf.deb ... Unpacking gtk-update-icon-cache (3.24.38-2~deb12u1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../034-adwaita-icon-theme_43-1_all.deb ... Unpacking adwaita-icon-theme (43-1) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../035-at-spi2-common_2.46.0-5_all.deb ... Unpacking at-spi2-common (2.46.0-5) ... Selecting previously unselected package m4. Preparing to unpack .../036-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../037-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... 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Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../044-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../045-libfontenc1_1%3a1.1.4-1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../046-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../047-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../048-xfonts-utils_1%3a7.7+6_armhf.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../049-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... 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Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../062-libtk8.6_8.6.13-2_armhf.deb ... Unpacking libtk8.6:armhf (8.6.13-2) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../063-tk8.6-blt2.5_2.5.3+dfsg-4.1_armhf.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Selecting previously unselected package blt. Preparing to unpack .../064-blt_2.5.3+dfsg-4.1_armhf.deb ... Unpacking blt (2.5.3+dfsg-4.1) ... Selecting previously unselected package dbus-user-session. Preparing to unpack .../065-dbus-user-session_1.14.10-1~deb12u1_armhf.deb ... Unpacking dbus-user-session (1.14.10-1~deb12u1) ... Selecting previously unselected package libdconf1:armhf. Preparing to unpack .../066-libdconf1_0.40.0-4_armhf.deb ... Unpacking libdconf1:armhf (0.40.0-4) ... Selecting previously unselected package dconf-service. Preparing to unpack .../067-dconf-service_0.40.0-4_armhf.deb ... Unpacking dconf-service (0.40.0-4) ... 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Unpacking python3-pyqt5.qtopengl (5.15.9+dfsg-1) ... Selecting previously unselected package python3-pymol. Preparing to unpack .../402-python3-pymol_2.5.0+dfsg-1+b3_armhf.deb ... Unpacking python3-pymol (2.5.0+dfsg-1+b3) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../403-python3-pytest_7.2.1-2_all.deb ... Unpacking python3-pytest (7.2.1-2) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../404-python3-urllib3_1.26.12-1_all.deb ... Unpacking python3-urllib3 (1.26.12-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../405-python3-requests_2.28.1+dfsg-1_all.deb ... Unpacking python3-requests (2.28.1+dfsg-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../406-python3-tqdm_4.64.1-1_all.deb ... Unpacking python3-tqdm (4.64.1-1) ... Selecting previously unselected package python3-wxgtk4.0. Preparing to unpack .../407-python3-wxgtk4.0_4.2.0+dfsg-3_armhf.deb ... Unpacking python3-wxgtk4.0 (4.2.0+dfsg-3) ... Selecting previously unselected package scons. Preparing to unpack .../408-scons_4.4.0+dfsg-1_all.deb ... Unpacking scons (4.4.0+dfsg-1) ... Setting up libboost-chrono1.74.0:armhf (1.74.0+ds1-21) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libboost-system1.74.0:armhf (1.74.0+ds1-21) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up liblcms2-2:armhf (2.14-2) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libwayland-server0:armhf (1.21.0-1) ... Setting up libpciaccess0:armhf (0.17-2) ... Setting up systemd-sysv (252.22-1~deb12u1) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libdouble-conversion3:armhf (3.2.1-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libboost1.74-dev:armhf (1.74.0+ds1-21) ... Setting up fonts-lato (2.0-2.1) ... Setting up libfftw3-single3:armhf (3.3.10-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up libboost-atomic1.74.0:armhf (1.74.0+ds1-21) ... Setting up liblerc4:armhf (4.0.0+ds-2) ... Setting up libzstd-dev:armhf (1.5.4+dfsg2-5) ... Setting up libantlr3c-3.4-0:armhf (3.4+dfsg-4) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libantlr3c-dev (3.4+dfsg-4) ... Setting up libdatrie1:armhf (0.2.13-2+b1) ... Setting up libmmdb2-0:armhf (2.0.22-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... Setting up libglvnd0:armhf (1.6.0-1) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libboost-chrono1.74-dev:armhf (1.74.0+ds1-21) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23) ... Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libnghttp2-14:armhf (1.52.0-1+deb12u1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:armhf (2020.2-5) ... Setting up xkb-data (2.35.1-1) ... Setting up file (1:5.44-3) ... Setting up libccp4-data (8.0.0-2) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up pybind11-dev (2.10.3-1) ... Setting up libpcre2-16-0:armhf (10.42-1) ... Setting up libaec0:armhf (1.0.6-1+b1) ... Setting up libcolord2:armhf (1.4.6-2.2) ... Setting up libopengl0:armhf (1.6.0-1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up libdconf1:armhf (0.40.0-4) ... Setting up unicode-data (15.0.0-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libfontenc1:armhf (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1) ... Setting up libpcre2-32-0:armhf (10.42-1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libgles2:armhf (1.6.0-1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libexpat1-dev:armhf (2.5.0-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libann-cctbx0 (1.1.2+doc-9+b1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ... Setting up libepoxy0:armhf (1.5.10-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libavahi-common-data:armhf (0.8-10) ... Setting up libboost-system1.74-dev:armhf (1.74.0+ds1-21) ... Setting up libdbus-1-3:armhf (1.14.10-1~deb12u1) ... Setting up liblzf1:armhf (3.6-3) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libimagequant0:armhf (2.17.0-1) ... Setting up libproc2-0:armhf (2:4.0.2-3) ... Setting up pymol-data (2.5.0+dfsg-1) ... Setting up libssl-dev:armhf (3.0.11-1~deb12u2) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libhwloc15:armhf (2.9.0-1) ... Setting up libevent-core-2.1-7:armhf (2.1.12-stable-8) ... Setting up libmmdb2-dev (2.0.22-1) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up liblz4-dev:armhf (1.9.4-1) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libccp4c0:armhf (8.0.0-2) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsensors5:armhf (1:3.6.0-7.1) ... Setting up liblerc-dev:armhf (4.0.0+ds-2) ... Setting up libfftw3-double3:armhf (3.3.10-1) ... Setting up libglapi-mesa:armhf (22.3.6-1+deb12u1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up libmtdev1:armhf (1.1.6-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.2.4-0.2+deb12u1) ... Setting up libboost-atomic1.74-dev:armhf (1.74.0+ds1-21) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libboost-serialization1.74.0:armhf (1.74.0+ds1-21) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:armhf (2.3.1-1) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up at-spi2-common (2.46.0-5) ... Setting up libtiff6:armhf (4.5.0-6+deb12u1) ... Setting up dbus-session-bus-common (1.14.10-1~deb12u1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libnl-3-200:armhf (3.7.0-0.2+b1) ... Setting up libmd4c0:armhf (0.4.8-1) ... Setting up libopenjp2-7:armhf (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up sgml-base (1.31) ... Setting up libatk1.0-0:armhf (2.46.0-5) ... Setting up libboost-dev:armhf (1.74.0.3) ... Setting up libglu1-mesa:armhf (9.0.2-1.1) ... Setting up libwayland-egl1:armhf (1.21.0-1) ... Setting up libopengl-dev:armhf (1.6.0-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libboost-date-time1.74.0:armhf (1.74.0+ds1-21) ... Setting up dbus-system-bus-common (1.14.10-1~deb12u1) ... Setting up libboost-python1.74.0 (1.74.0+ds1-21) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libwebpmux3:armhf (1.2.4-0.2+deb12u1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libtiffxx6:armhf (4.5.0-6+deb12u1) ... Setting up libdeflate-dev:armhf (1.14-1) ... Setting up libdrm-common (2.4.114-1) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libevdev2:armhf (1.13.0+dfsg-1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3~deb12u1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (1.2.0+dfsg-1) ... Setting up dbus-bin (1.14.10-1~deb12u1) ... Setting up libonig5:armhf (6.9.8-1) ... Setting up libgudev-1.0-0:armhf (237-2) ... Setting up libsz2:armhf (1.0.6-1+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up libpopt0:armhf (1.19+dfsg-1) ... Setting up libboost-thread1.74.0:armhf (1.74.0+ds1-21) ... Setting up libboost-numpy1.74.0 (1.74.0+ds1-21) ... Setting up libann-cctbx-dev (1.1.2+doc-9+b1) ... Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-8) ... Setting up libccp4f0:armhf (8.0.0-2) ... Setting up libwacom-common (2.6.0-1) ... Setting up libxkbcommon0:armhf (1.5.0-1) ... Setting up libwayland-client0:armhf (1.21.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libssm2:armhf (1.4.0-2) ... Setting up mime-support (3.66) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libxcb-xinput0:armhf (1.15-1) ... Setting up libccp4-dev:armhf (8.0.0-2) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libfftw3-bin (3.3.10-1) ... Setting up libwacom9:armhf (2.6.0-1) ... Setting up libjq1:armhf (1.6-2.1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libwebpdemux2:armhf (1.2.4-0.2+deb12u1) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libxcb-keysyms1:armhf (0.4.0-1+b2) ... Setting up libaec-dev:armhf (1.0.6-1+b1) ... Setting up libxcb-shape0:armhf (1.15-1) ... Setting up libavahi-common3:armhf (0.8-10) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libjbig-dev:armhf (2.1-6.1) ... Setting up libxcb-render-util0:armhf (0.3.9-1+b1) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libxcb-icccm4:armhf (0.4.1-1.1) ... Setting up dbus-daemon (1.14.10-1~deb12u1) ... Setting up libwxbase3.2-1:armhf (3.2.2+dfsg-2) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up libxcb-util1:armhf (0.4.0-1+b1) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up libinput-bin (1.22.1-1) ... Setting up libxcb-xkb1:armhf (1.15-1) ... Setting up libxcb-image0:armhf (0.4.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:armhf (3.7.0-0.2+b1) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up libwebp-dev:armhf (1.2.4-0.2+deb12u1) ... Setting up libxcb-xinerama0:armhf (1.15-1) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up libtiff-dev:armhf (4.5.0-6+deb12u1) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up dbus (1.14.10-1~deb12u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.2-1) ... Setting up libxkbcommon-x11-0:armhf (1.5.0-1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libboost-numpy1.74-dev (1.74.0+ds1-21) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up libqt5core5a:armhf (5.15.8+dfsg-11) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up libboost-serialization1.74-dev:armhf (1.74.0+ds1-21) ... Setting up libssm-dev:armhf (1.4.0-2) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libqt5dbus5:armhf (5.15.8+dfsg-11) ... Setting up libwayland-cursor0:armhf (1.21.0-1) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up xml-core (0.18+nmu1) ... Setting up jq (1.6-2.1) ... Setting up libllvm15:armhf (1:15.0.6-4+b1) ... Setting up libxslt1.1:armhf (1.1.35-1) ... Setting up libpam-systemd:armhf (252.22-1~deb12u1) ... Setting up libcurl4:armhf (7.88.1-10+deb12u5) ... Setting up libx11-6:armhf (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up libqt5test5:armhf (5.15.8+dfsg-11) ... Setting up libxcomposite1:armhf (1:0.4.5-1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libfftw3-dev:armhf (3.3.10-1) ... Setting up libavahi-client3:armhf (0.8-10) ... Setting up rsync (3.2.7-1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ... Setting up libdrm-amdgpu1:armhf (2.4.114-1+b1) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libinput10:armhf (1.22.1-1) ... Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ... Setting up libx11-xcb1:armhf (2:1.8.4-2+deb12u2) ... Setting up libibverbs1:armhf (44.0-2) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.114-1+b1) ... Setting up libxdamage1:armhf (1:1.1.6-1) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up libgbm1:armhf (22.3.6-1+deb12u1) ... Setting up libdrm-radeon1:armhf (2.4.114-1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ... Setting up libgl1-mesa-dri:armhf (22.3.6-1+deb12u1) ... Setting up libx11-dev:armhf (2:1.8.4-2+deb12u2) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (7.88.1-10+deb12u5) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer. Setting up libcairo2:armhf (1.16.0-7) ... Setting up libqt5network5:armhf (5.15.8+dfsg-11) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libxnvctrl0:armhf (525.85.05-3~deb12u1) ... Setting up libqt5sql5:armhf (5.15.8+dfsg-11) ... Setting up libboost-date-time1.74-dev:armhf (1.74.0+ds1-21) ... Setting up dbus-user-session (1.14.10-1~deb12u1) ... Setting up libqt5xml5:armhf (5.15.8+dfsg-11) ... Setting up libegl-mesa0:armhf (22.3.6-1+deb12u1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libcurl4-openssl-dev:armhf (7.88.1-10+deb12u5) ... Setting up libnotify4:armhf (0.8.1-1) ... Setting up libraqm0:armhf (0.7.0-4.1) ... Setting up libxinerama1:armhf (2:1.1.4-3) ... Setting up libboost-numpy-dev (1.74.0.3) ... Setting up libxrandr2:armhf (2:1.5.2-2+b1) ... Setting up libcups2:armhf (2.4.2-3+deb12u5) ... Setting up libhdf5-103-1:armhf (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:armhf (1.10.8+repack1-1) ... Setting up libegl1:armhf (1.6.0-1) ... Setting up libboost-thread1.74-dev:armhf (1.74.0+ds1-21) ... Setting up libcairo-gobject2:armhf (1.16.0-7) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ... Setting up libboost-thread-dev:armhf (1.74.0.3) ... Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up libhdf5-hl-100:armhf (1.10.8+repack1-1) ... Setting up librdmacm1:armhf (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libglx-mesa0:armhf (22.3.6-1+deb12u1) ... Setting up libpython3.11:armhf (3.11.2-6) ... Setting up libxi6:armhf (2:1.8-1+b1) ... Setting up libglx0:armhf (1.6.0-1) ... Setting up libxtst6:armhf (2:1.2.3-1.1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up libxcursor1:armhf (1:1.2.1-1) ... Setting up libqt5gui5:armhf (5.15.8+dfsg-11) ... Setting up debhelper (13.11.4) ... Setting up libqt5widgets5:armhf (5.15.8+dfsg-11) ... Setting up dconf-service (0.40.0-4) ... Setting up python3 (3.11.2-1+b1) ... Setting up dh-exec (0.27) ... Setting up libatspi2.0-0:armhf (2.46.0-5) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up libhwloc-plugins:armhf (2.9.0-1) ... Setting up libqt5help5:armhf (5.15.8-2) ... Setting up python3-psutil (5.9.4-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up libcbf1:armhf (0.9.7+dfsg1-2+b2) ... Setting up python3-six (1.16.0-4) ... Setting up libqt5printsupport5:armhf (5.15.8+dfsg-11) ... Setting up libatk-bridge2.0-0:armhf (2.46.0-5) ... Setting up python3-pil:armhf (9.4.0-1.1+b1) ... Setting up python3-decorator (5.1.1-3) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.8+repack1-1) ... Setting up python3-packaging (23.0-1) ... Setting up libgl1:armhf (1.6.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up python3-certifi (2022.9.24-1) ... Setting up libpython3.11-dev:armhf (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-reportlab-accel:armhf (3.6.12-1+b1) ... Setting up python3-pycbf (0.9.7+dfsg1-2+b2) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-idna (3.3-1) ... Setting up libhdf5-fortran-102:armhf (1.10.8+repack1-1) ... Setting up libglew2.2:armhf (2.2.0-4+b1) ... Setting up python3-urllib3 (1.26.12-1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up libnetcdf19:armhf (1:4.9.0-3+b1) ... Setting up python3-pyqt5.sip (12.11.1-1) ... Setting up libqt5opengl5:armhf (5.15.8+dfsg-11) ... Setting up python3-lxml:armhf (4.9.2-1+b1) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.8+repack1-1) ... Setting up libglx-dev:armhf (1.6.0-1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-msgpack (1.0.3-2+b1) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up libgl-dev:armhf (1.6.0-1) ... Setting up python3-procrunner (1.1.0-1) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up libfabric1:armhf (1.17.0-3) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:armhf (3.11.2-1+b1) ... Setting up python3-renderpm:armhf (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up libqt5designer5:armhf (5.15.8-2) ... Setting up dconf-gsettings-backend:armhf (0.40.0-4) ... Setting up python3-py (1.11.0-1) ... Setting up libpmix2:armhf (4.2.2-1+deb12u1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up python3-charset-normalizer (3.0.1-2) ... Setting up python3-pytest (7.2.1-2) ... Setting up libopenmpi3:armhf (4.1.4-3+b1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-tqdm (4.64.1-1) ... Setting up sfftw2 (2.1.5-6) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:armhf (3.11.2-3) ... Setting up python3-opengl (3.1.6+dfsg-3) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-pint (0.19.2-1) ... Setting up python3-chardet (5.1.0+dfsg-2) ... Setting up fftw2 (2.1.5-6) ... Setting up python3-pil.imagetk:armhf (9.4.0-1.1+b1) ... Setting up libpython3-all-dev:armhf (3.11.2-1+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-requests (2.28.1+dfsg-1) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up sfftw-dev (2.1.5-6) ... Setting up libglu1-mesa-dev:armhf (9.0.2-1.1) ... Setting up scons (4.4.0+dfsg-1) ... Setting up python3-pip (23.0.1+dfsg-1) ... Setting up libclipper2:armhf (2.1.20201109-1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-future (0.18.2-6) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up fftw-dev (2.1.5-6) ... Setting up libgtk-3-common (3.24.38-2~deb12u1) ... Setting up python3-pyqt5 (5.15.9+dfsg-1) ... Setting up python3-mrcfile (1.4.3-3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pyqt5.qtopengl (5.15.9+dfsg-1) ... Setting up python3-scipy (1.10.1-2) ... Setting up libgtk-3-0:armhf (3.24.38-2~deb12u1) ... Setting up python3-h5py-serial (3.7.0-8) ... Setting up libclipper-dev:armhf (2.1.20201109-1) ... Setting up libboost-python1.74-dev (1.74.0+ds1-21) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libcbf-dev:armhf (0.9.7+dfsg1-2+b2) ... Setting up python3-h5py (3.7.0-8) ... Setting up python3-pymol (2.5.0+dfsg-1+b3) ... Setting up libwxgtk3.2-1:armhf (3.2.2+dfsg-2) ... Setting up libwxgtk-gl3.2-1:armhf (3.2.2+dfsg-2) ... Setting up python3-wxgtk4.0 (4.2.0+dfsg-3) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Processing triggers for systemd (252.22-1~deb12u1) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cctbx_2022.9+ds2+~3.11.2+ds1-6_source.changes dpkg-buildpackage: info: source package cctbx dpkg-buildpackage: info: source version 2022.9+ds2+~3.11.2+ds1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Stefano Rivera dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' cp -f debian/setup.py setup.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources dh_auto_clean pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; find . -name __pycache__ -type d -exec rm -rf {} \; rm -f setup.py rm -rf annlib annlib_adaptbx rm -rf ccp4io ccp4io_adaptbx rm -rf gui_resources make[1]: Leaving directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libcctbx0.substvars debian/libcctbx-dev.substvars debian/python3-cctbx.substvars debian/files rm -fr -- debian/libcctbx0/ debian/tmp/ debian/libcctbx-dev/ debian/python3-cctbx/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' cp -f debian/setup.py setup.py cp -r debian/annlib_adaptbx annlib_adaptbx mkdir annlib cp -r debian/ccp4io_adaptbx ccp4io_adaptbx mkdir ccp4io cp -r debian/gui_resources gui_resources # configure the cctbx python modules dh_auto_configure pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config # configure dxtbx python modules dh_auto_configure --sourcedirectory=dxtbx pybuild --configure -i python{version} -p 3.11 --dir dxtbx I: pybuild base:240: python3.11 setup.py config Found 20 dxtbx dispatchers Found 128 Format classes running config # configure the cctbx libtbx build system dh_auto_configure -- -s custom --configure-args="mkdir -p {build_dir}_ && cd {build_dir}_ \ && {interpreter} /build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx/configure.py --build=debug --use_environment_flags --enable_cxx11 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tbxx wxtbx annlib ccp4io" pybuild --configure -i python{version} -p 3.11 -s custom "--configure-args=mkdir -p {build_dir}_ && cd {build_dir}_ && {interpreter} /build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx/configure.py --build=debug --use_environment_flags --enable_cxx11 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tbxx wxtbx annlib ccp4io" I: pybuild base:240: mkdir -p '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build'_ && cd '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build'_ && python3.11 /build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx/configure.py --build=debug --use_environment_flags --enable_cxx11 annlib_adaptbx boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx cma_es crys3d dxtbx fable gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tbxx wxtbx annlib ccp4io Python: 3.11.2 "/usr/bin/python3.11" Compiler: default Build mode: debug Warning level: 0 Precompiled Headers: False Static libraries: False Static exe: False Scan Boost headers: False Write full flex_fwd.h files: False Build Boost.Python extensions: True Define BOOST_PYTHON_NO_PY_SIGNATURES: False Define BOOST_PYTHON_BOOL_INT_STRICT: True Enable OpenMP if possible: False Boost threads enabled: True Enable CUDA: False Enable KOKKOS: False Use conda: False Use opt_resources if available: False Use environment flags: True Enable C++11: True CXXFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include/hdf5/serial CFLAGS = -g -O2 -ffile-prefix-map=/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1=. -fstack-protector-strong -Wformat -Werror=format-security CPPFLAGS = -Wdate-time -D_FORTIFY_SOURCE=2 LDFLAGS = -Wl,-z,relro -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 command_version_suffix: None Relocatable paths anchored at: /build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_ Top-down list of all modules involved: wxtbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/wxtbx" rstbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/rstbx" spotfinder "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/spotfinder" mmtbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/mmtbx" gltbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/gltbx" dxtbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/dxtbx" iotbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/iotbx" smtbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/smtbx" ucif "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/ucif" crys3d "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/crys3d" cma_es "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cma_es" cctbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cctbx" chiltbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/chiltbx" ccp4io+adaptbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/ccp4io" "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/ccp4io_adaptbx" cbflib_adaptbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cbflib_adaptbx" annlib+adaptbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/annlib" "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/annlib_adaptbx" scitbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/scitbx" fable "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/fable" omptbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/omptbx" boost+adaptbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/boost" "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/boost_adaptbx" tbxx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/tbxx" libtbx "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx" Creating files in build directory: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_" dispatcher_include_template.sh dispatcher_head.sh setpaths.sh setpaths.csh setpaths_all.sh setpaths_all.csh setpaths_debug.sh unsetpaths.sh setpaths_debug.csh unsetpaths.csh SConstruct Makefile run_tests.csh Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/boost_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/fable/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/scitbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cbflib_adaptbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cctbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/crys3d/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/smtbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/iotbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/gltbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/mmtbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/spotfinder/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/rstbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/wxtbx/command_line" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/libtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/boost_adaptbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/scitbx/libtbx_refresh.py" Generating C++ header files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/include/scitbx/array_family" Generating C++ files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/include/scitbx/array_family/boost_python" Using fable to convert scitbx/lbfgs.f Updating entry points for scitbx 1 entries for entry point pytest_randomly.random_seeder WARNING: Ignoring invalid distribution -pycbf (/usr/lib/python3/dist-packages) WARNING: Ignoring invalid distribution -pycbf (/usr/lib/python3/dist-packages) Obtaining file:///build/reproducible-path/cctbx-2022.9%2Bds2%2B~3.11.2%2Bds1/dxtbx Checking if build backend supports build_editable: started Checking if build backend supports build_editable: finished with status 'done' Preparing editable metadata (pyproject.toml): started Preparing editable metadata (pyproject.toml): finished with status 'done' WARNING: Ignoring invalid distribution -pycbf (/usr/lib/python3/dist-packages) Building wheels for collected packages: dxtbx Building editable for dxtbx (pyproject.toml): started Building editable for dxtbx (pyproject.toml): finished with status 'done' Created wheel for dxtbx: filename=dxtbx-3.11.2-0.editable-py3-none-any.whl size=6141 sha256=70f776f588945053480d15b3664c6d988a52f87ba3129ad3333c6e1272bf746f Stored in directory: /tmp/pip-ephem-wheel-cache-wm9aauy7/wheels/c9/65/9f/2b98990eed63492b01400828d96e4dbc5e74502aed74937ddf Successfully built dxtbx Installing collected packages: dxtbx Successfully installed dxtbx-3.11.2 Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/cctbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/cctbx/eltbx" Generating C++ files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/include/cctbx/boost_python" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/crys3d/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/smtbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/include/smtbx/boost_python" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/iotbx/libtbx_refresh.py" Using fable to convert iotbx/pdb/hybrid_36_f.f Writing: iotbx/pdb/hybrid_36_fem.cpp Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/dxtbx/libtbx_refresh.py" Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/gltbx/libtbx_refresh.py" Generating C++ files in: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/.pybuild/cpython3_3.11/build_/gltbx" fonts: 8x13 9x15 10x20 /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Processing: "/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1/mmtbx/libtbx_refresh.py" Done. make[1]: Leaving directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' rm -f debian/libcctbx-dev.debhelper.log debian/libcctbx0.debhelper.log debian/python3-cctbx.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' false make[1]: *** [debian/rules:83: override_dh_auto_build] Error 1 make[1]: Leaving directory '/build/reproducible-path/cctbx-2022.9+ds2+~3.11.2+ds1' make: *** [debian/rules:28: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3191 and its subdirectories Mon Mar 4 08:53:02 UTC 2024 W: No second build log, what happened?