Wed May 10 17:13:26 UTC 2023 I: starting to build libfreecontact-perl/bookworm/armhf on jenkins on '2023-05-10 17:13' Wed May 10 17:13:26 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_5/7651/console.log Wed May 10 17:13:26 UTC 2023 I: Downloading source for bookworm/libfreecontact-perl=0.08-9 --2023-05-10 17:13:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/libf/libfreecontact-perl/libfreecontact-perl_0.08-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2184 (2.1K) [text/prs.lines.tag] Saving to: ‘libfreecontact-perl_0.08-9.dsc’ 0K .. 100% 290M=0s 2023-05-10 17:13:26 (290 MB/s) - ‘libfreecontact-perl_0.08-9.dsc’ saved [2184/2184] Wed May 10 17:13:26 UTC 2023 I: libfreecontact-perl_0.08-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libfreecontact-perl Binary: libfreecontact-perl Architecture: any Version: 0.08-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libfreecontact-perl Vcs-Git: https://salsa.debian.org/med-team/libfreecontact-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper Package-List: libfreecontact-perl deb perl optional arch=any Checksums-Sha1: dea098c8025b42e79227265dd74252ceedbfa007 58672 libfreecontact-perl_0.08.orig.tar.gz d2bdf94b23d0ca1fce6bb1df286ba03736b17947 4148 libfreecontact-perl_0.08-9.debian.tar.xz Checksums-Sha256: 7386762985b9e36ec13379948528f1f18e49cf799ba5436a46aa60e9cb041911 58672 libfreecontact-perl_0.08.orig.tar.gz 7264029a96308f34c90fc201b3b7ee6f75cd12f5412f34b57098cb32ab6fdea5 4148 libfreecontact-perl_0.08-9.debian.tar.xz Files: 798e25cfc3954e027d208f62dd3fe6ea 58672 libfreecontact-perl_0.08.orig.tar.gz 49edda281a739efab371adb449402c83 4148 libfreecontact-perl_0.08-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHodgoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE0jg/+NNIJ0xmtW0+M4m7Z/M7RJunfhXJEXyCJ 2uR3K+0jyER5JJ9UQw7TMR+M19NCliWpTWdXlNYC1+p9chj46IlW/pV1+lNAsOes jmWO/JJLVAn2hexfmzBQytW7UGG+EZyiSIJYo/Wxv6D+vQ413lAbCrO59fRVj2Pu c9WMMSHcGetF7E/CUQukaR5Uu76598/h85WKBbiFH5BW/jl0zGB7HsGq3dnc9ahT rIgFhhynzmnNuWKiC0S6RADvma1YLGBWyuixygruRhk2TxRtFXH1jT7pYyCFpC7v f958/c6mH+D3yzuXYRSjki3fdA5k9kcD++c3zzTt2VtOEFlp/eqoN2n0M17aOvNQ sEPqpXzWhDZ6K2/1ICWGKA5WvbjUA9xOcpe5uu8582OVmqVsnBxE5ED27HYngE4b RFipAvxoc3uRZlXpaVI0JAMrrdYVce+bfWVYSqhLeqyyLoWKmAbrQkFEkrHuytYs hp1O8QSireSw0k0+yMeOm6YARVtCTqEknNbsyeSITQH/NkoEOTLSR29iYdxSNO2M jlg9swzJUtE/XbzpwVar9GjT2U1gxUwSGp3lJV+7RdaYrEkmP30hQCaZFXu8aojv p9s2k89K4KIcp1mZR0aN88w2QKvds1USWYIQyLYM3//clWy23WrXIusZdFXGqPE0 uqyR4TECfL4= =2PNN -----END PGP SIGNATURE----- Wed May 10 17:13:26 UTC 2023 I: Checking whether the package is not for us Wed May 10 17:13:26 UTC 2023 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Wed May 10 17:13:26 UTC 2023 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Wed May 10 17:22:25 UTC 2023 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 10 05:13:56 -12 2023 I: pbuilder-time-stamp: 1683738836 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfreecontact-perl_0.08-9.dsc] I: copying [./libfreecontact-perl_0.08.orig.tar.gz] I: copying [./libfreecontact-perl_0.08-9.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jan 19 08:35:22 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libfreecontact-perl_0.08-9.dsc: no acceptable signature found dpkg-source: info: extracting libfreecontact-perl in libfreecontact-perl-0.08 dpkg-source: info: unpacking libfreecontact-perl_0.08.orig.tar.gz dpkg-source: info: unpacking libfreecontact-perl_0.08-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Fix-timing-initialization.patch dpkg-source: info: applying missing-use-carp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14266/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='b16518e37409437096b78fc6c76615c2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14266' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/pbuilderrc_XM6g --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/b1 --logfile b1/build.log libfreecontact-perl_0.08-9.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/14266/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libextutils-xspp-perl, libfreecontact-dev, perl, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libextutils-xspp-perl; however: Package libextutils-xspp-perl is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libextutils-xspp-perl{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libicu72{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 20.4 MB of archives. After unpacking 74.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libextutils-xspp-perl all 0.1800-3 [146 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libfreecontact0v5 armhf 1.0.21-12 [59.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libfreecontact-dev armhf 1.0.21-12 [72.7 kB] Fetched 20.4 MB in 3s (7705 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... 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Unpacking liblapack3:armhf (3.11.0-2) ... Selecting previously unselected package libfreecontact0v5:armhf. Preparing to unpack .../34-libfreecontact0v5_1.0.21-12_armhf.deb ... Unpacking libfreecontact0v5:armhf (1.0.21-12) ... Selecting previously unselected package libfreecontact-dev:armhf. Preparing to unpack .../35-libfreecontact-dev_1.0.21-12_armhf.deb ... Unpacking libfreecontact-dev:armhf (1.0.21-12) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libextutils-xspp-perl (0.1800-3) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.21-12) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-12) ... Setting up libfreecontact0v5:armhf (1.0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libfreecontact-dev:armhf (1.0.21-12) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/libfreecontact-perl-0.08/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfreecontact-perl_0.08-9_source.changes dpkg-buildpackage: info: source package libfreecontact-perl dpkg-buildpackage: info: source version 0.08-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libfreecontact-perl-0.08' rm -f Makefile.old dh_auto_clean make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libfreecontact-perl-0.08' dh_auto_configure -- OPTIMIZE="-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security" LD="'arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now" /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now" "OPTIMIZE=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security" "LD='arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for FreeContact Writing MYMETA.yml and MYMETA.json make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_auto_build make -j3 make[1]: Entering directory '/build/libfreecontact-perl-0.08' Running Mkbootstrap for FreeContact () chmod 644 "FreeContact.bs" "/usr/bin/perl" "/usr/share/perl/5.36/ExtUtils/xsubpp" -C++ -hiertype -noprototypes -typemap '/usr/share/perl/5.36/ExtUtils/typemap' -typemap '/build/libfreecontact-perl-0.08/perlobject.map' -typemap '/build/libfreecontact-perl-0.08/typemap' -typemap '/build/libfreecontact-perl-0.08/typemap' FreeContact.xs > FreeContact.xsc "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 cp lib/FreeContact.pm blib/lib/FreeContact.pm AutoSplitting blib/lib/FreeContact.pm (blib/lib/auto/FreeContact) mv FreeContact.xsc FreeContact.c g++ -c -I. -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libfreecontact-perl-0.08=. -fstack-protector-strong -Wformat -Werror=format-security -DVERSION=\"0.08\" -DXS_VERSION=\"0.08\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" FreeContact.c FreeContact.c: In function 'void XS_FreeContact__Predictor__run_with_seq_weights(PerlInterpreter*, CV*)': FreeContact.c:726:52: warning: format '%d' expects argument of type 'int', but argument 2 has type 'I32' {aka 'long int'} [-Wformat=] 726 | else croak("FreeContact::Predictor::_run_with_seq_weights() -- __aliw[%d] is not a number", k); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~ | | | I32 {aka long int} rm -f blib/arch/auto/FreeContact/FreeContact.so 'arm-linux-gnueabihf-gcc' -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong FreeContact.o -o blib/arch/auto/FreeContact/FreeContact.so \ -lfreecontact \ chmod 755 blib/arch/auto/FreeContact/FreeContact.so Manifying 1 pod document make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_auto_test make -j3 test TEST_VERBOSE=1 make[1]: Entering directory '/build/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/01FreeContact.t .. 1..3 ok 1 - use FreeContact; ok 2 - FreeContact->can(...) ok 3 - FreeContact::Predictor->can(...) ok will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.146371 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.172541 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 14.337 secs, inverted matrix (incl LUf) in 41.9929 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 all done in 42.6636 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.148831 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.219221 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 19.6583 secs will try rho 0.00178064, exact solution  iteration = 1will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.212427 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 15.4984 secs, inverted matrix (incl LUf) in 51.1524 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987054769839 collected apc_mean[fro] = 3.35437751555787 t/02test.t ......... 1..10 ok 1 - use FreeContact; ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor' ok 3 ok 4 ok 5 - precision test ok 6 - timing results test ok 7 ok 8 ok 9 - wtot test ok 10 - wtot precision test ok All tests successful. Files=2, Tests=13, 118 wallclock secs ( 0.06 usr 0.02 sys + 113.22 cusr 0.36 csys = 113.66 CPU) Result: PASS make[1]: Leaving directory '/build/libfreecontact-perl-0.08' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libfreecontact-perl/ make -j3 install DESTDIR=/build/libfreecontact-perl-0.08/debian/libfreecontact-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/libfreecontact-perl-0.08' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- FreeContact.bs blib/arch/auto/FreeContact/FreeContact.bs 644 Manifying 1 pod document Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/FreeContact/FreeContact.so Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/FreeContact.pm Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/FreeContact/autosplit.ix Installing /build/libfreecontact-perl-0.08/debian/libfreecontact-perl/usr/share/man/man3/FreeContact.3pm make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb debian/rules override_dh_gencontrol make[1]: Entering directory '/build/libfreecontact-perl-0.08' dh_gencontrol -- '-VDescription=FreeContact is a protein residue contact predictor optimized for speed.${Newline}Its input is a multiple sequence alignment. FreeContact can function as an${Newline}accelerated drop-in for the published contact predictors${Newline}EVfold-mfDCA of DS. Marks (2011) and${Newline}PSICOV of D. Jones (2011).${Newline}${Newline}FreeContact is accelerated by a combination of vector instructions, multiple${Newline}threads, and faster implementation of key parts.${Newline}Depending on the alignment, 8-fold or higher speedups are possible.${Newline}${Newline}A sufficiently large alignment is required for meaningful results.${Newline}As a minimum, an alignment with an effective (after-weighting) sequence count${Newline}bigger than the length of the query sequence should be used. Alignments with${Newline}tens of thousands of (effective) sequences are considered good input.${Newline}${Newline}jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite${Newline}can be used to generate the alignments, for example.' make[1]: Leaving directory '/build/libfreecontact-perl-0.08' dh_md5sums dh_builddeb dpkg-deb: building package 'libfreecontact-perl-dbgsym' in '../libfreecontact-perl-dbgsym_0.08-9_armhf.deb'. dpkg-deb: building package 'libfreecontact-perl' in '../libfreecontact-perl_0.08-9_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libfreecontact-perl_0.08-9_armhf.buildinfo dpkg-genchanges --build=binary -O../libfreecontact-perl_0.08-9_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14266 and its subdirectories I: Current time: Wed May 10 05:22:20 -12 2023 I: pbuilder-time-stamp: 1683739340 Wed May 10 17:22:27 UTC 2023 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net. Wed May 10 17:22:27 UTC 2023 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net. Wed May 10 17:54:26 UTC 2023 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. Wed May 10 17:54:28 UTC 2023 I: libfreecontact-perl_0.08-9_armhf.changes: Format: 1.8 Date: Wed, 19 Jan 2022 21:31:25 +0100 Source: libfreecontact-perl Binary: libfreecontact-perl libfreecontact-perl-dbgsym Architecture: armhf Version: 0.08-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libfreecontact-perl - fast protein contact predictor - binding for Perl Changes: libfreecontact-perl (0.08-9) unstable; urgency=medium . * Upstream download vanished * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. Checksums-Sha1: 809e13c08a18fc289cfcd6668380adf2198bd0c7 164456 libfreecontact-perl-dbgsym_0.08-9_armhf.deb 171e5429ab0880d818570f346bb0e3c53e767d92 5254 libfreecontact-perl_0.08-9_armhf.buildinfo efd20a056fb0e16f359c0f4017b129aa593fba19 61332 libfreecontact-perl_0.08-9_armhf.deb Checksums-Sha256: ce9a5ee879b9ce0ca792c8af01af35c8a390b693f386ace2c7fb5a433bc3f0e7 164456 libfreecontact-perl-dbgsym_0.08-9_armhf.deb 196df25d12c0c69607979058f08ac28b1bf0ab82e23369446c2add95fdd985b3 5254 libfreecontact-perl_0.08-9_armhf.buildinfo 4e42dd1bd80552a5fc247530f8cd446c204e6415d8a2f74c63e46a573cf25f6e 61332 libfreecontact-perl_0.08-9_armhf.deb Files: fcbd4f515fd226be4cf88ed83a8b143d 164456 debug optional libfreecontact-perl-dbgsym_0.08-9_armhf.deb 948940e01c184c2af35a83dc4342a176 5254 perl optional libfreecontact-perl_0.08-9_armhf.buildinfo f3407e9d168a22df7a6aaf1edec85b34 61332 perl optional libfreecontact-perl_0.08-9_armhf.deb Wed May 10 17:54:29 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/libfreecontact-perl_0.08-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/libfreecontact-perl_0.08-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/libfreecontact-perl_0.08-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/b1/libfreecontact-perl_0.08-9_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.UA3k41kE/b2/libfreecontact-perl_0.08-9_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.301s) 0.301s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed May 10 17:54:36 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed May 10 17:54:36 UTC 2023 I: libfreecontact-perl from bookworm built successfully and reproducibly on armhf. Wed May 10 17:54:38 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 10 17:54:38 UTC 2023 I: Submitting 8.0K b1/libfreecontact-perl_0.08-9_armhf.buildinfo.asc Wed May 10 17:54:39 UTC 2023 I: Submitting 8.0K b2/libfreecontact-perl_0.08-9_armhf.buildinfo.asc Wed May 10 17:54:40 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 10 17:54:40 UTC 2023 I: Done submitting .buildinfo files. Wed May 10 17:54:40 UTC 2023 I: Removing signed libfreecontact-perl_0.08-9_armhf.buildinfo.asc files: removed './b1/libfreecontact-perl_0.08-9_armhf.buildinfo.asc' removed './b2/libfreecontact-perl_0.08-9_armhf.buildinfo.asc'