Fri Jun 9 18:46:16 UTC 2023 I: starting to build libghemical/bookworm/armhf on jenkins on '2023-06-09 18:46' Fri Jun 9 18:46:16 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/2281/console.log Fri Jun 9 18:46:16 UTC 2023 I: Downloading source for bookworm/libghemical=3.0.0-4.3 --2023-06-09 18:46:16-- http://cdn-fastly.deb.debian.org/debian/pool/main/libg/libghemical/libghemical_3.0.0-4.3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2290 (2.2K) [text/prs.lines.tag] Saving to: ‘libghemical_3.0.0-4.3.dsc’ 0K .. 100% 195M=0s 2023-06-09 18:46:16 (195 MB/s) - ‘libghemical_3.0.0-4.3.dsc’ saved [2290/2290] Fri Jun 9 18:46:16 UTC 2023 I: libghemical_3.0.0-4.3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libghemical Binary: libghemical-dev, libghemical5v5, libghemical-data Architecture: any all Version: 3.0.0-4.3 Maintainer: Debichem Team Uploaders: Michael Banck Homepage: http://bioinformatics.org/ghemical/ghemical/ Standards-Version: 4.5.0 Vcs-Browser: https:https://salsa.debian.org/debichem-team/libghemical Vcs-Git: https://salsa.debian.org:/debichem-team/libghemical.git Build-Depends: debhelper-compat (= 12), gfortran | fortran-compiler, flex, intltool (>= 0.40.0), pkg-config (>= 0.9.0), libblas-dev, liblapack-dev, libmopac7-dev (>= 1.14), libsc-dev (>= 2.3.1-2), mesa-common-dev, libglib2.0-dev Package-List: libghemical-data deb science optional arch=all libghemical-dev deb libdevel optional arch=any libghemical5v5 deb libs optional arch=any Checksums-Sha1: 330fd33968182ba383d0309e72a36f3c8bd02904 787947 libghemical_3.0.0.orig.tar.gz 54e2aba86bbbf3f132e97c1ee443166de66fc2b1 5248 libghemical_3.0.0-4.3.debian.tar.xz Checksums-Sha256: db8c3add0aa1f94c21016d60fa3f66fb194e56b8e9fceaa3860c603700efc3ac 787947 libghemical_3.0.0.orig.tar.gz 5164a94b9e336f68dd72af80608896dd9c7d80967adef0d3c9d2fbd848e0db60 5248 libghemical_3.0.0-4.3.debian.tar.xz Files: 1d5c9c19bb119470d2bb41a7e681eafd 787947 libghemical_3.0.0.orig.tar.gz c255917388fd13ea6fd0da58a0f779ea 5248 libghemical_3.0.0-4.3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAl7XlBYACgkQy+a7Tl2a 06W4/BAAgWhr9iEi+Usm+AfTSWQf1ufP8Z/6nlWxvv7LXdbt/CcBx3IrKadoYSqD jgpTIcZxQxgXLaTfPG+8zboEnVu+Qb0UqYXoJCyon60aIiakunTZeF6PZMeF++yO /F4/bWxiPPb/oApXPzXBI2DGG0e6Sthn6EEIqxQSdWJXjOEzRBSsSoTeA8cLgNYG 0TdxzxwNWAzYcPdLr1CXfHq9Lm2UuyswxV05xYDaBklLkPjfemL4hyoWAWFGpt43 eMYYAuM8vltrlpOpHN1iH9j8lMn1tDXYG6+cGnpVAFZ22Pt4rThlc/KJJuTvAQCh 7HBgTH9+rqIDVGpeNaOvCpKr+NspiMqosvxgoSR9DC5PHidmHe5js1JEUSu8x58j d47eTtLDVtoNiKNLcEoRyf7LdzSRWzyh/8Lyt7eGFwfPCwqtWFB2WQ29EULYIeYq gPpG7mRrgmM3AY9z7nYsG2urvvRsjJvOoHonxdG/wXdM+pV/rfRlQNChBVdKEf0a GoRV8IgS95N2Z38pH31+QwonvGi2iqnwr0M0ddwzaDxl+VK/kQDJDRIdVIzAOT2R Lk4t9NSuNC5rdTHAs7ugBNXu4pojxShVAJylkWtGYtlmcT+cUaNQvt46SUa/8fhO k67uA5Sjkp27G0Iq1UM0p/ckRxM4Lg9XLLrrcgChmHZRVnBSVpk= =4O5V -----END PGP SIGNATURE----- Fri Jun 9 18:46:16 UTC 2023 I: Checking whether the package is not for us Fri Jun 9 18:46:16 UTC 2023 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Fri Jun 9 18:46:16 UTC 2023 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Fri Jun 9 18:58:24 UTC 2023 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 9 06:46:25 -12 2023 I: pbuilder-time-stamp: 1686336385 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libghemical_3.0.0-4.3.dsc] I: copying [./libghemical_3.0.0.orig.tar.gz] I: copying [./libghemical_3.0.0-4.3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 3 00:14:14 2020 -12 gpgv: using RSA key 82383CE9165B347C787081A2CBE6BB4E5D9AD3A5 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libghemical_3.0.0-4.3.dsc: no acceptable signature found dpkg-source: info: extracting libghemical in libghemical-3.0.0 dpkg-source: info: unpacking libghemical_3.0.0.orig.tar.gz dpkg-source: info: unpacking libghemical_3.0.0-4.3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-underlinking.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27959/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='03556d951caf4db081473dbf6996c374' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27959' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/pbuilderrc_c1cR --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/b1 --logfile b1/build.log libghemical_3.0.0-4.3.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/27959/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), gfortran | fortran-compiler, flex, intltool (>= 0.40.0), pkg-config (>= 0.9.0), libblas-dev, liblapack-dev, libmopac7-dev (>= 1.14), libsc-dev (>= 2.3.1-2), mesa-common-dev, libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran | fortran-compiler; however: Package gfortran is not installed. Package fortran-compiler is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on intltool (>= 0.40.0); however: Package intltool is not installed. pbuilder-satisfydepends-dummy depends on pkg-config (>= 0.9.0); however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmopac7-dev (>= 1.14); however: Package libmopac7-dev is not installed. pbuilder-satisfydepends-dummy depends on libsc-dev (>= 2.3.1-2); however: Package libsc-dev is not installed. pbuilder-satisfydepends-dummy depends on mesa-common-dev; however: Package mesa-common-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libblkid-dev{a} libbsd0{a} libcbor0.8{a} libclone-perl{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-dev{a} libdrm-etnaviv1{a} libdrm-exynos1{a} libdrm-freedreno1{a} libdrm-nouveau2{a} libdrm-omap1{a} libdrm-radeon1{a} libdrm-tegra0{a} libdrm2{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libffi-dev{a} libfido2-1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libint1{a} libio-html-perl{a} libio-socket-ssl-perl{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack-dev{a} liblapack3{a} libllvm15{a} libltdl-dev{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmopac7-1gf{a} libmopac7-dev{a} libmount-dev{a} libmunge2{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess-dev{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librdmacm1{a} libreadline8{a} libregexp-ipv6-perl{a} libsc-data{a} libsc-dev{a} libsc7v5{a} libselinux1-dev{a} libsensors-config{a} libsensors5{a} libsepol-dev{a} libsub-override-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxml-parser-perl{a} libxml2{a} libxnvctrl0{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-common-dev{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} perl-openssl-defaults{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} uuid-dev{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libdata-dump-perl libfl-dev libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libmail-sendmail-perl libmailtools-perl lynx shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 197 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After unpacking 396 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf flex armhf 2.6.4-8.2 [405 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 13 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf netbase all 6.4 [12.8 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.9-1 [1381 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libcbor0.8 armhf 0.8.0-2+b1 [23.1 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libfido2-1 armhf 1.12.0-2+b1 [69.3 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf openssh-client armhf 1:9.2p1-2 [893 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 55 http://deb.debian.org/debian bookworm/main armhf libnl-3-200 armhf 3.7.0-0.2+b1 [55.8 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-200 armhf 3.7.0-0.2+b1 [156 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libibverbs1 armhf 44.0-2 [53.6 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf ibverbs-providers armhf 44.0-2 [28.4 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 60 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libfile-listing-perl all 6.15-1 [12.6 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libhtml-tagset-perl all 3.20-6 [11.7 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libhtml-parser-perl armhf 3.81-1 [97.4 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf perl-openssl-defaults armhf 7+b1 [7916 B] Get: 75 http://deb.debian.org/debian bookworm/main armhf libnet-ssleay-perl armhf 1.92-2+b1 [298 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libio-socket-ssl-perl all 2.081-2 [219 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libnet-http-perl all 6.22-1 [25.3 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libwww-perl all 6.68-1 [186 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libxml-parser-perl armhf 2.46-4 [197 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf intltool all 0.51.0-6 [50.8 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf uuid-dev armhf 2.38.1-5+b1 [38.5 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf libblkid-dev armhf 2.38.1-5+b1 [169 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libdrm-common all 2.4.114-1 [7112 B] Get: 89 http://deb.debian.org/debian bookworm/main armhf libdrm2 armhf 2.4.114-1+b1 [33.0 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libdrm-amdgpu1 armhf 2.4.114-1+b1 [19.3 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf libdrm-radeon1 armhf 2.4.114-1+b1 [19.3 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libdrm-nouveau2 armhf 2.4.114-1+b1 [16.7 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libdrm-omap1 armhf 2.4.114-1+b1 [8548 B] Get: 94 http://deb.debian.org/debian bookworm/main armhf libdrm-freedreno1 armhf 2.4.114-1+b1 [18.4 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libdrm-exynos1 armhf 2.4.114-1+b1 [12.4 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libdrm-tegra0 armhf 2.4.114-1+b1 [9956 B] Get: 97 http://deb.debian.org/debian bookworm/main armhf libdrm-etnaviv1 armhf 2.4.114-1+b1 [12.4 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libpciaccess0 armhf 0.17-2 [48.7 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf libpciaccess-dev armhf 0.17-2 [53.3 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf libdrm-dev armhf 2.4.114-1+b1 [248 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf libevent-2.1-7 armhf 2.1.12-stable-8 [161 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-8 [120 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-8 [97.5 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-8 [53.2 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-8 [58.3 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libevent-dev armhf 2.1.12-stable-8 [290 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf librdmacm1 armhf 44.0-2 [60.6 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libfabric1 armhf 1.17.0-3 [385 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libffi-dev armhf 3.4.4-1 [55.0 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libglvnd0 armhf 1.6.0-1 [51.9 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libglapi-mesa armhf 22.3.6-1+deb12u1 [41.0 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libx11-xcb1 armhf 2:1.8.4-2 [192 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf libxfixes3 armhf 1:6.0.0-2 [21.1 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 129 http://deb.debian.org/debian bookworm/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf libz3-4 armhf 4.8.12-3.1 [6061 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf libllvm15 armhf 1:15.0.6-4+b1 [20.5 MB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libsensors5 armhf 1:3.6.0-7.1 [31.6 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libgl1-mesa-dri armhf 22.3.6-1+deb12u1 [5792 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libglx-mesa0 armhf 22.3.6-1+deb12u1 [126 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libglx0 armhf 1.6.0-1 [32.0 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libgl1 armhf 1.6.0-1 [90.6 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf x11proto-dev all 2022.1-1 [599 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf libxau-dev armhf 1:1.0.9-1 [22.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 144 http://deb.debian.org/debian bookworm/main armhf libxcb1-dev armhf 1.15-1 [179 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libx11-dev armhf 2:1.8.4-2 [777 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libglx-dev armhf 1.6.0-1 [15.3 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libgl-dev armhf 1.6.0-1 [100 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libglib2.0-data all 2.74.6-2 [1207 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libglib2.0-bin armhf 2.74.6-2 [103 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libglib2.0-dev-bin armhf 2.74.6-2 [147 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libsepol-dev armhf 3.4-2.1 [317 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf libpcre2-posix3 armhf 10.42-1 [55.0 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libpcre2-dev armhf 10.42-1 [666 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libselinux1-dev armhf 3.4-1+b6 [150 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libmount-dev armhf 2.38.1-5+b1 [22.5 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf libglib2.0-dev armhf 2.74.6-2 [1479 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libhwloc15 armhf 2.9.0-1 [127 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libnuma1 armhf 2.0.16-1 [17.8 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libnuma-dev armhf 2.0.16-1 [33.0 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libltdl7 armhf 2.4.7-5 [390 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libltdl-dev armhf 2.4.7-5 [162 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libhwloc-dev armhf 2.9.0-1 [214 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libxnvctrl0 armhf 525.85.05-1 [12.2 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf ocl-icd-libopencl1 armhf 2.3.1-1 [40.1 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libhwloc-plugins armhf 2.9.0-1 [15.9 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libnl-3-dev armhf 3.7.0-0.2+b1 [98.4 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf libnl-route-3-dev armhf 3.7.0-0.2+b1 [183 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf libibverbs-dev armhf 44.0-2 [195 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libint1 armhf 1.2.1-6 [8324 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libmopac7-1gf armhf 1.15-6+b3 [466 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libmopac7-dev armhf 1.15-6+b3 [538 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf libmunge2 armhf 0.5.15-2 [15.7 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libpmix2 armhf 4.2.2-1+b1 [553 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libopenmpi3 armhf 4.1.4-3+b1 [1849 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf openmpi-common all 4.1.4-3 [167 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libpmix-dev armhf 4.2.2-1+b1 [864 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf openmpi-bin armhf 4.1.4-3+b1 [194 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libopenmpi-dev armhf 4.1.4-3+b1 [920 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libsc-data all 2.3.1-22 [111 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf libsc7v5 armhf 2.3.1-22 [1716 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf mpi-default-dev armhf 1.14 [5548 B] Get: 196 http://deb.debian.org/debian bookworm/main armhf libsc-dev armhf 2.3.1-22 [287 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf mesa-common-dev armhf 22.3.6-1+deb12u1 [2002 kB] Fetched 106 MB in 17s (6213 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.2_armhf.deb ... Unpacking flex (2.6.4-8.2) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_armhf.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:armhf (3.11.2-6) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up libdebhelper-perl (13.11.4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up perl-openssl-defaults:armhf (7+b1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libint1 (1.2.1-6) ... Setting up file (1:5.44-3) ... Setting up libffi-dev:armhf (3.4.4-1) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libpcre2-16-0:armhf (10.42-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1) ... Setting up libpcre2-32-0:armhf (10.42-1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libglib2.0-data (2.74.6-2) ... Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up uuid-dev:armhf (2.38.1-5+b1) ... Setting up libhwloc15:armhf (2.9.0-1) ... Setting up libevent-core-2.1-7:armhf (2.1.12-stable-8) ... Setting up libevent-2.1-7:armhf (2.1.12-stable-8) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.21-12) ... Setting up libsc-data (2.3.1-22) ... Setting up libsepol-dev:armhf (3.4-2.1) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsensors5:armhf (1:3.6.0-7.1) ... Setting up libltdl7:armhf (2.4.7-5) ... Setting up libglapi-mesa:armhf (22.3.6-1+deb12u1) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libnuma1:armhf (2.0.16-1) ... Setting up libpcre2-posix3:armhf (10.42-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:armhf (2.3.1-1) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libnl-3-200:armhf (3.7.0-0.2+b1) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:armhf (1.12.0-2+b1) ... Setting up openssl (3.0.9-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up libevent-pthreads-2.1-7:armhf (2.1.12-stable-8) ... Setting up libnet-ssleay-perl:armhf (1.92-2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2022.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libblkid-dev:armhf (2.38.1-5+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:armhf (2.1.12-stable-8) ... Setting up flex (2.6.4-8.2) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libxau-dev:armhf (1:1.0.9-1) ... Setting up libpcre2-dev:armhf (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libselinux1-dev:armhf (3.4-1+b6) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libevent-openssl-2.1-7:armhf (2.1.12-stable-8) ... Setting up libglib2.0-bin (2.74.6-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libmopac7-1gf (1.15-6+b3) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:armhf (2.0.16-1) ... Setting up libnl-route-3-200:armhf (3.7.0-0.2+b1) ... Setting up libxcb-present0:armhf (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:armhf (2.4.7-5) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libxdmcp-dev:armhf (1:1.1.2-3) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up pkg-config:armhf (1.8.1-1) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:armhf (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up libnl-3-dev:armhf (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up libhtml-parser-perl:armhf (3.81-1) ... Setting up libllvm15:armhf (1:15.0.6-4+b1) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libhwloc-dev:armhf (2.9.0-1) ... Setting up libdrm-omap1:armhf (2.4.114-1+b1) ... Setting up libmount-dev:armhf (2.38.1-5+b1) ... Setting up libdrm-exynos1:armhf (2.4.114-1+b1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libdrm-amdgpu1:armhf (2.4.114-1+b1) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libx11-xcb1:armhf (2:1.8.4-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libibverbs1:armhf (44.0-2) ... Setting up libdrm-nouveau2:armhf (2.4.114-1+b1) ... Setting up libdrm-etnaviv1:armhf (2.4.114-1+b1) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up ibverbs-providers:armhf (44.0-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdrm-radeon1:armhf (2.4.114-1+b1) ... Setting up openssh-client (1:9.2p1-2) ... Setting up libmopac7-dev (1.15-6+b3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up libgl1-mesa-dri:armhf (22.3.6-1+deb12u1) ... Setting up libx11-dev:armhf (2:1.8.4-2) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libxnvctrl0:armhf (525.85.05-1) ... Setting up libnl-route-3-dev:armhf (3.7.0-0.2+b1) ... Setting up libxfixes3:armhf (1:6.0.0-2) ... Setting up libdrm-freedreno1:armhf (2.4.114-1+b1) ... Setting up libdrm-tegra0:armhf (2.4.114-1+b1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up librdmacm1:armhf (44.0-2) ... Setting up python3.11 (3.11.2-6) ... Setting up libdrm-dev:armhf (2.4.114-1+b1) ... Setting up libglx-mesa0:armhf (22.3.6-1+deb12u1) ... Setting up libglx0:armhf (1.6.0-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up libibverbs-dev:armhf (44.0-2) ... Setting up libhwloc-plugins:armhf (2.9.0-1) ... Setting up libgl1:armhf (1.6.0-1) ... Setting up libglx-dev:armhf (1.6.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up libgl-dev:armhf (1.6.0-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up libfabric1:armhf (1.17.0-3) ... Setting up libglib2.0-dev-bin (2.74.6-2) ... Setting up libpmix2:armhf (4.2.2-1+b1) ... Setting up libopenmpi3:armhf (4.1.4-3+b1) ... Setting up libglib2.0-dev:armhf (2.74.6-2) ... Setting up libsc7v5 (2.3.1-22) ... Setting up mesa-common-dev:armhf (22.3.6-1+deb12u1) ... Setting up libpmix-dev:armhf (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:armhf (4.1.4-3+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode Setting up mpi-default-dev (1.14) ... Setting up libsc-dev (2.3.1-22) ... Setting up libwww-perl (6.68-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up libxml-parser-perl (2.46-4) ... Setting up intltool (0.51.0-6) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libghemical-3.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libghemical_3.0.0-4.3_source.changes dpkg-buildpackage: info: source package libghemical dpkg-buildpackage: info: source version 3.0.0-4.3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alastair McKinstry dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --parallel --with autoreconf dh_clean debian/rules build dh build --parallel --with autoreconf dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:26: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:26: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10887: AM_CONFIG_HEADER is expanded from... configure.ac:26: the top level configure.ac:32: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:32: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:10887: AM_CONFIG_HEADER is expanded from... configure.ac:32: the top level configure.ac:91: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:91: You should run autoupdate. aclocal.m4:799: AC_PROG_LIBTOOL is expanded from... configure.ac:91: the top level configure.ac:105: warning: The macro `GLIB_GNU_GETTEXT' is obsolete. configure.ac:105: You should run autoupdate. aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... aclocal.m4:73: GLIB_LC_MESSAGES is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/headers.m4:89: _AC_CHECK_HEADER_COMPILE is expanded from... ./lib/autoconf/headers.m4:56: AC_CHECK_HEADER is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:105: warning: The macro `AC_OUTPUT_COMMANDS' is obsolete. configure.ac:105: You should run autoupdate. ./lib/autoconf/status.m4:1025: AC_OUTPUT_COMMANDS is expanded from... aclocal.m4:172: GLIB_WITH_NLS is expanded from... aclocal.m4:388: GLIB_GNU_GETTEXT is expanded from... aclocal.m4:488: AM_GLIB_GNU_GETTEXT is expanded from... configure.ac:105: the top level configure.ac:126: warning: The macro `AC_TRY_RUN' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2997: AC_TRY_RUN is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:126: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:126: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... acinclude.m4:10: AM_PATH_SC is expanded from... configure.ac:126: the top level configure.ac:164: warning: The macro `AC_PROG_CC_STDC' is obsolete. configure.ac:164: You should run autoupdate. ./lib/autoconf/c.m4:1666: AC_PROG_CC_STDC is expanded from... configure.ac:164: the top level configure.ac:176: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:176: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:176: the top level configure.ac:86: installing './compile' configure.ac:42: installing './missing' /usr/share/automake-1.16/am/ltlibrary.am: warning: 'libghemical.la': linking libtool libraries using a non-POSIX /usr/share/automake-1.16/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac' src/Makefile.am:1: while processing Libtool library 'libghemical.la' src/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libghemical-3.0.0' dh_auto_configure -- --enable-mpqc --enable-mopac7 --disable-sctest ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-mpqc --enable-mopac7 --disable-sctest checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ar... /usr/bin/ar checking for sh... /bin/bash checking whether make sets $(MAKE)... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking whether NLS is requested... yes checking for intltool >= 0.40.0... 0.51.0 found checking for intltool-update... /usr/bin/intltool-update checking for intltool-merge... /usr/bin/intltool-merge checking for intltool-extract... /usr/bin/intltool-extract checking for xgettext... /usr/bin/xgettext checking for msgmerge... /usr/bin/msgmerge checking for msgfmt... /usr/bin/msgfmt checking for gmsgfmt... /usr/bin/msgfmt checking for perl... /usr/bin/perl checking for perl >= 5.8.1... 5.36.0 checking for XML::Parser... ok checking for locale.h... yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for libintl.h... yes checking for ngettext in libc... yes checking for dgettext in libc... yes checking for bind_textdomain_codeset... yes checking for msgfmt... (cached) /usr/bin/msgfmt checking for dcgettext... yes checking if msgfmt accepts -c... yes checking for gmsgfmt... (cached) /usr/bin/msgfmt checking for xgettext... (cached) /usr/bin/xgettext checking whether build environment is sane... yes checking for acos in -lm... yes checking for main in -lblas... yes checking for main in -llapack... yes checking for sc-config... /usr/bin/sc-config checking SC - version... yes checking for libmopac7 >= 1.13... yes checking for GL/gl.h... yes checking for inline... inline checking for an ANSI C-conforming const... yes checking for egrep... (cached) /bin/grep -E configure: build options: ^^^^^^^^^^^^^^ enable MPQC : yes enable MOPAC7 : yes checking that generated files are newer than configure... done checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating libghemical.pc config.status: creating Makefile config.status: creating bin/Makefile config.status: creating bin/amber/Makefile config.status: creating bin/builder/Makefile config.status: creating bin/param_mm/Makefile config.status: creating bin/param_mm/default/Makefile config.status: creating bin/param_mm/prmfit/Makefile config.status: creating bin/param_mm/tripos52/Makefile config.status: creating bin/param_sf/Makefile config.status: creating bin/param_sf/default/Makefile config.status: creating po/Makefile.in config.status: creating src/Makefile config.status: creating src/libghemicalconfig.h config.status: creating src/libghemical-features.h config.status: executing src/libghemicalconfig2.h commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing stamp.h commands config.status: executing po/stamp-it commands make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_build make -j3 make[1]: Entering directory '/build/libghemical-3.0.0' Making all in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make all-am make[3]: Entering directory '/build/libghemical-3.0.0/src' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o atom.lo atom.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bond.lo bond.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o constraint.lo constraint.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -fPIC -DPIC -o .libs/constraint.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -fPIC -DPIC -o .libs/atom.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -fPIC -DPIC -o .libs/bond.o atom.cpp:33:44: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 33 | element element::current_element = element("C"); | ^~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c constraint.cpp -o constraint.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c bond.cpp -o bond.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c atom.cpp -o atom.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o model.lo model.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -fPIC -DPIC -o .libs/model.o In file included from local_i18n.h:38, from model.cpp:46: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from model.cpp:35: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o engine.lo engine.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o typerule.lo typerule.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -fPIC -DPIC -o .libs/engine.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -fPIC -DPIC -o .libs/typerule.o In file included from model.cpp:31: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ typerule.cpp: In member function 'i32s typerule::ReadSubRule(std::istream*, std::ostream*)': typerule.cpp:172:56: warning: narrowing conversion of 'strlen(((const char*)((char*)(&((typerule*)this)->typerule::buffer))))' from 'size_t' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 172 | i32s tmp1[2] = { strlen(buffer), 0 }; | ~~~~~~^~~~~~~~ model.cpp: In member function 'bool model::GetCRDSetVisible(i32u)': model.cpp:319:30: warning: control reaches end of non-void function [-Wreturn-type] 319 | else assertion_failed(__FILE__, __LINE__, "index overflow"); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c typerule.cpp -o typerule.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c engine.cpp -o engine.o >/dev/null 2>&1 model.cpp: In member function 'virtual void model::RemoveAtom(iter_al)': model.cpp:636:6: note: parameter passing for argument of type 'iter_al' {aka 'std::__cxx11::list::iterator'} changed in GCC 7.1 636 | void model::RemoveAtom(iter_al it1) | ^~~~~ model.cpp: In member function 'void model::ClearModel()': model.cpp:844:27: note: parameter passing for argument of type 'iter_al' {aka 'std::__cxx11::list::iterator'} changed in GCC 7.1 844 | RemoveAtom(it1); | ~~~~~~~~~~^~~~~ model.cpp: In member function 'void model::RemoveHydrogens()': model.cpp:1960:35: note: parameter passing for argument of type 'iter_al' {aka 'std::__cxx11::list::iterator'} changed in GCC 7.1 1960 | RemoveAtom(ita1); // now this iterator is invalidated?!?!?! | ~~~~~~~~~~^~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utility.lo utility.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -fPIC -DPIC -o .libs/utility.o utility.cpp: In function 'void DefineSecondaryStructure(model*)': utility.cpp:308:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 308 | i32s tmp1[2] = { n1, n2 }; | ^~ utility.cpp:309:42: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 309 | i32s tmp2[2] = { n1, n2 + 4 }; | ^~ utility.cpp:349:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:349:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 349 | i32s t1a[2] = { n1, n2 - 1 }; i32s t1b[2] = { n1, n3 }; | ^~ utility.cpp:352:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:352:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 352 | i32s t2a[2] = { n1, n3 }; i32s t2b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:355:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:355:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 355 | i32s t3a[2] = { n1, n3 - 1 }; i32s t3b[2] = { n1, n2 }; | ^~ utility.cpp:358:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:358:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 358 | i32s t4a[2] = { n1, n2 }; i32s t4b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:361:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:361:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 361 | i32s t5a[2] = { n1, n2 }; i32s t5b[2] = { n1, n3 }; | ^~ utility.cpp:364:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:364:75: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 364 | i32s t6a[2] = { n1, n3 }; i32s t6b[2] = { n1, n2 }; | ^~ utility.cpp:367:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:367:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 367 | i32s t7a[2] = { n1, n2 - 1 }; i32s t7b[2] = { n1, n3 + 1 }; | ^~ utility.cpp:370:49: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ utility.cpp:370:79: warning: narrowing conversion of 'n1' from 'i32u' {aka 'unsigned int'} to 'i32s' {aka 'int'} [-Wnarrowing] 370 | i32s t8a[2] = { n1, n3 - 1 }; i32s t8b[2] = { n1, n2 + 1 }; | ^~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o chn_info.lo chn_info.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -fPIC -DPIC -o .libs/chn_info.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c utility.cpp -o utility.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c chn_info.cpp -o chn_info.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqbuild.lo seqbuild.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -fPIC -DPIC -o .libs/seqbuild.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mfinder.lo mfinder.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -fPIC -DPIC -o .libs/mfinder.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c model.cpp -o model.o >/dev/null 2>&1 In file included from /usr/include/c++/12/vector:70, from atom.h:42, from mfinder.h:35, from mfinder.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mf_data_atm&}; _Tp = mf_data_atm; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mf_data_atm; _Alloc = std::allocator]', inlined from 'mfinder::mfinder(char*)' at mfinder.cpp:55:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mf_data_atm; _Alloc = std::allocator]', inlined from 'mfinder::mfinder(char*)' at mfinder.cpp:67:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c mfinder.cpp -o mfinder.o >/dev/null 2>&1 In file included from /usr/include/c++/12/vector:70, from atom.h:42, from seqbuild.h:43, from seqbuild.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sb_data_atm&}; _Tp = sb_data_atm; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sb_data_atm; _Alloc = std::allocator]', inlined from 'void sb_data_res::ReadModification(std::istream&)' at seqbuild.cpp:1737:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sb_data_atm; _Alloc = std::allocator]', inlined from 'std::istream& operator>>(std::istream&, sb_data_res&)' at seqbuild.cpp:1798:27: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sb_data_atm; _Alloc = std::allocator]', inlined from 'sequencebuilder::sequencebuilder(chn_info::chn_type, const char*)' at seqbuild.cpp:161:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sb_data_atm; _Alloc = std::allocator]', inlined from 'sequencebuilder::sequencebuilder(chn_info::chn_type, const char*)' at seqbuild.cpp:187:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c seqbuild.cpp -o seqbuild.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm.lo eng1_qm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -fPIC -DPIC -o .libs/eng1_qm.o In file included from local_i18n.h:38, from eng1_qm.cpp:27: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm.cpp:24: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | In file included from eng1_qm.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm.cpp -o eng1_qm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mpqc.lo eng1_qm_mpqc.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -fPIC -DPIC -o .libs/eng1_qm_mpqc.o In file included from local_i18n.h:38, from eng1_qm_mpqc.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng1_qm_mpqc.cpp:22: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | In file included from /usr/include/sc/util/group/linkage.h:32, from /usr/include/sc/math/scmat/linkage.h:34, from /usr/include/sc/chemistry/qc/scf/linkage.h:37, from eng1_qm_mpqc.cpp:44: /usr/include/sc/scconfig.h:281: warning: "PACKAGE_NAME" redefined 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:102: note: this is the location of the previous definition 102 | #define PACKAGE_NAME "libghemical" | /usr/include/sc/scconfig.h:284: warning: "PACKAGE_STRING" redefined 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:105: note: this is the location of the previous definition 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:287: warning: "PACKAGE_TARNAME" redefined 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:108: note: this is the location of the previous definition 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:293: warning: "PACKAGE_VERSION" redefined 293 | #define PACKAGE_VERSION "" | libghemicalconfig.h:114: note: this is the location of the previous definition 114 | #define PACKAGE_VERSION "3.0.0" | In file included from eng1_qm_mpqc.h:32: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_qm_mopac.lo eng1_qm_mopac.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -fPIC -DPIC -o .libs/eng1_qm_mopac.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm.lo eng1_mm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -fPIC -DPIC -o .libs/eng1_mm.o In file included from eng1_qm_mopac.h:30, from eng1_qm_mopac.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm_mopac.cpp: In destructor 'eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In destructor 'virtual eng1_qm_mopac::~eng1_qm_mopac()': eng1_qm_mopac.cpp:153:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 153 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:157:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 157 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp: In member function 'void eng1_qm_mopac::FixMeLaterTSS()': eng1_qm_mopac.cpp:178:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 178 | system(cs_FOR005.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ eng1_qm_mopac.cpp:181:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 181 | system(cs_SHUTDOWN.str().c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mopac.cpp -o eng1_qm_mopac.o >/dev/null 2>&1 In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_c_dst&}; _Tp = mm_c_dst; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_c_dst; _Alloc = std::allocator]', inlined from 'eng1_mm::eng1_mm(setup*, i32u)' at eng1_mm.cpp:273:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_qm_mpqc.cpp -o eng1_qm_mpqc.o >/dev/null 2>&1 In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_c_dst; _Alloc = std::allocator]', inlined from 'eng1_mm::eng1_mm(setup*, i32u)' at eng1_mm.cpp:273:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm.cpp -o eng1_mm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_tripos52.lo eng1_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -fPIC -DPIC -o .libs/eng1_mm_tripos52.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_tripos52.lo tab_mm_tripos52.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -fPIC -DPIC -o .libs/tab_mm_tripos52.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_default.lo eng1_mm_default.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -fPIC -DPIC -o .libs/eng1_mm_default.o In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_tripos52.h:39, from eng1_mm_tripos52.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_tripos52_bt1&}; _Tp = mm_tripos52_bt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_tripos52_bt2&}; _Tp = mm_tripos52_bt2; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_tripos52_bt3&}; _Tp = mm_tripos52_bt3; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:94:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:151:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:295:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_tripos52.h:39, from tab_mm_tripos52.h:33, from tab_mm_tripos52.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const tripos52_bs&}; _Tp = tripos52_bs; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const tripos52_ab&}; _Tp = tripos52_ab; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const tripos52_tr&}; _Tp = tripos52_tr; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const tripos52_lj&}; _Tp = tripos52_lj; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const tripos52_ci&}; _Tp = tripos52_ci; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = tripos52_bs; _Alloc = std::allocator]', inlined from 'tripos52_tables::tripos52_tables()' at tab_mm_tripos52.cpp:101:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = tripos52_ab; _Alloc = std::allocator]', inlined from 'tripos52_tables::tripos52_tables()' at tab_mm_tripos52.cpp:128:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = tripos52_tr; _Alloc = std::allocator]', inlined from 'tripos52_tables::tripos52_tables()' at tab_mm_tripos52.cpp:155:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = tripos52_lj; _Alloc = std::allocator]', inlined from 'tripos52_tables::tripos52_tables()' at tab_mm_tripos52.cpp:181:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = tripos52_ci; _Alloc = std::allocator]', inlined from 'tripos52_tables::tripos52_tables()' at tab_mm_tripos52.cpp:208:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:94:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:151:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_tripos52_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_tripos52_bt::eng1_mm_tripos52_bt(setup*, i32u)' at eng1_mm_tripos52.cpp:295:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_tripos52.cpp -o tab_mm_tripos52.o >/dev/null 2>&1 In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_default.h:40, from eng1_mm_default.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_default_bt1&}; _Tp = mm_default_bt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_tripos52.cpp -o eng1_mm_tripos52.o >/dev/null 2>&1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_default_bt2&}; _Tp = mm_default_bt2; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_default_bt3&}; _Tp = mm_default_bt3; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_default_bt4&}; _Tp = mm_default_bt4; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:126:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:201:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:375:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt4; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:496:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:126:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:201:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:375:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_default_bt4; _Alloc = std::allocator]', inlined from 'eng1_mm_default_bt::eng1_mm_default_bt(setup*, i32u)' at eng1_mm_default.cpp:496:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_default.lo tab_mm_default.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -fPIC -DPIC -o .libs/tab_mm_default.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_default.cpp -o eng1_mm_default.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_mm_prmfit.lo eng1_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -fPIC -DPIC -o .libs/eng1_mm_prmfit.o In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_default.h:40, from tab_mm_default.h:48, from tab_mm_default.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const default_at&}; _Tp = default_at; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const default_bs&}; _Tp = default_bs; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const default_ab&}; _Tp = default_ab; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const default_tr&}; _Tp = default_tr; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const default_op&}; _Tp = default_op; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = default_at; _Alloc = std::allocator]', inlined from 'default_tables::default_tables()' at tab_mm_default.cpp:84:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = default_bs; _Alloc = std::allocator]', inlined from 'default_tables::default_tables()' at tab_mm_default.cpp:113:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = default_ab; _Alloc = std::allocator]', inlined from 'default_tables::default_tables()' at tab_mm_default.cpp:140:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = default_tr; _Alloc = std::allocator]', inlined from 'default_tables::default_tables()' at tab_mm_default.cpp:167:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = default_op; _Alloc = std::allocator]', inlined from 'default_tables::default_tables()' at tab_mm_default.cpp:194:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_prmfit.h:35, from eng1_mm_prmfit.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_prmfit_bt1&}; _Tp = mm_prmfit_bt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_prmfit_bt2&}; _Tp = mm_prmfit_bt2; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_prmfit_bt3&}; _Tp = mm_prmfit_bt3; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_prmfit_bt4&}; _Tp = mm_prmfit_bt4; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const mm_prmfit_nbt1&}; _Tp = mm_prmfit_nbt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:115:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:179:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:340:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt4; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:450:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_nbt1; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:535:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt1; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:115:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt2; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:179:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt3; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:340:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_bt4; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:450:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = mm_prmfit_nbt1; _Alloc = std::allocator]', inlined from 'eng1_mm_prmfit::eng1_mm_prmfit(setup*, i32u, prmfit_tables&)' at eng1_mm_prmfit.cpp:535:26: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_default.cpp -o tab_mm_default.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tab_mm_prmfit.lo tab_mm_prmfit.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_mm_prmfit.cpp -o eng1_mm_prmfit.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -fPIC -DPIC -o .libs/tab_mm_prmfit.o In file included from /usr/include/c++/12/vector:70, from atom.h:42, from eng1_mm.h:35, from eng1_mm_prmfit.h:35, from tab_mm_prmfit.h:42, from tab_mm_prmfit.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const prmfit_at&}; _Tp = prmfit_at; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const prmfit_bs&}; _Tp = prmfit_bs; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const prmfit_ab&}; _Tp = prmfit_ab; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const prmfit_tr&}; _Tp = prmfit_tr; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const prmfit_op&}; _Tp = prmfit_op; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = prmfit_at; _Alloc = std::allocator]', inlined from 'prmfit_tables::prmfit_tables(const char*)' at tab_mm_prmfit.cpp:82:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = prmfit_bs; _Alloc = std::allocator]', inlined from 'prmfit_tables::prmfit_tables(const char*)' at tab_mm_prmfit.cpp:111:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = prmfit_ab; _Alloc = std::allocator]', inlined from 'prmfit_tables::prmfit_tables(const char*)' at tab_mm_prmfit.cpp:140:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = prmfit_tr; _Alloc = std::allocator]', inlined from 'prmfit_tables::prmfit_tables(const char*)' at tab_mm_prmfit.cpp:169:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = prmfit_op; _Alloc = std::allocator]', inlined from 'prmfit_tables::prmfit_tables(const char*)' at tab_mm_prmfit.cpp:198:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c tab_mm_prmfit.cpp -o tab_mm_prmfit.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf.lo eng1_sf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -fPIC -DPIC -o .libs/eng1_sf.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf_ua.lo eng1_sf_ua.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_ua.cpp -fPIC -DPIC -o .libs/eng1_sf_ua.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_ua.cpp -o eng1_sf_ua.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng1_sf_cg.lo eng1_sf_cg.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_cg.cpp -fPIC -DPIC -o .libs/eng1_sf_cg.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf_cg.cpp -o eng1_sf_cg.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eng2_qm_mm.lo eng2_qm_mm.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -fPIC -DPIC -o .libs/eng2_qm_mm.o In file included from local_i18n.h:38, from eng2_qm_mm.cpp:24: libghemicalconfig.h:102: warning: "PACKAGE_NAME" redefined 102 | #define PACKAGE_NAME "libghemical" | In file included from /usr/include/sc/util/misc/exenv.h:37, from /usr/include/sc/util/class/class.h:46, from /usr/include/sc/util/keyval/keyval.h:42, from eng1_qm_mpqc.h:37, from eng2_qm_mm.h:38, from eng2_qm_mm.cpp:22: /usr/include/sc/scconfig.h:281: note: this is the location of the previous definition 281 | #define PACKAGE_NAME "" | libghemicalconfig.h:105: warning: "PACKAGE_STRING" redefined 105 | #define PACKAGE_STRING "libghemical 3.0.0" | /usr/include/sc/scconfig.h:284: note: this is the location of the previous definition 284 | #define PACKAGE_STRING "" | libghemicalconfig.h:108: warning: "PACKAGE_TARNAME" redefined 108 | #define PACKAGE_TARNAME "libghemical" | /usr/include/sc/scconfig.h:287: note: this is the location of the previous definition 287 | #define PACKAGE_TARNAME "" | libghemicalconfig.h:114: warning: "PACKAGE_VERSION" redefined 114 | #define PACKAGE_VERSION "3.0.0" | /usr/include/sc/scconfig.h:293: note: this is the location of the previous definition 293 | #define PACKAGE_VERSION "" | /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o notice.lo notice.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -fPIC -DPIC -o .libs/notice.o In file included from eng2_qm_mm.h:28: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:90:155: warning: no return statement in function returning non-void [-Wreturn-type] 90 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mopac::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:91:142: warning: no return statement in function returning non-void [-Wreturn-type] 91 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng2_qm_mm.h:127:155: warning: no return statement in function returning non-void [-Wreturn-type] 127 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng2_qm_mm.h: In member function 'virtual bool eng2_qm_mm_mpqc::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng2_qm_mm.h:128:142: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c notice.cpp -o notice.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng2_qm_mm.cpp -o eng2_qm_mm.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o conjgrad.lo conjgrad.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -fPIC -DPIC -o .libs/conjgrad.o In file included from /usr/include/c++/12/vector:70, from engine.h:47, from eng1_sf.h:78, from eng1_sf.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_bt1&}; _Tp = sf_bt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_bt2&}; _Tp = sf_bt2; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_bt3&}; _Tp = sf_bt3; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_bt4&}; _Tp = sf_bt4; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_nonbonded_lookup&}; _Tp = sf_nonbonded_lookup; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const sf_nbt1&}; _Tp = sf_nbt1; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1335:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1394:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt3; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1557:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1666:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1725:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt4; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2094:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2154:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2171:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2182:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2245:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2301:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_nonbonded_lookup; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2334:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_nbt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2348:30: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:70, from conjgrad.h:32, from conjgrad.cpp:22: /usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const cgvar&}; _Tp = cgvar; _Alloc = std::allocator]': /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/12/vector:64: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = cgvar; _Alloc = std::allocator]', inlined from 'void conjugate_gradient::AddVar(f64*, f64*)' at conjgrad.cpp:44:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c conjgrad.cpp -o conjgrad.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o intcrd.lo intcrd.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -fPIC -DPIC -o .libs/intcrd.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o search.lo search.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -fPIC -DPIC -o .libs/search.o In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1335:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1394:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt3; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1557:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1666:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:1725:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt4; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2094:25: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2154:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2171:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2182:23: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2245:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_bt2; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2301:24: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_nonbonded_lookup; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2334:19: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = sf_nbt1; _Alloc = std::allocator]', inlined from 'eng1_sf::eng1_sf(setup*, i32u, bool, bool)' at eng1_sf.cpp:2348:30: /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c intcrd.cpp -o intcrd.o >/dev/null 2>&1 In file included from search.h:35, from search.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ search.cpp: In constructor 'transition_state_search::transition_state_search(model*, f64, f64)': search.cpp:714:32: note: parameter passing for argument of type 'iter_al' {aka 'std::__cxx11::list::iterator'} changed in GCC 7.1 714 | mdl->RemoveAtom(it1); | ~~~~~~~~~~~~~~~^~~~~ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o geomopt.lo geomopt.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -fPIC -DPIC -o .libs/geomopt.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c search.cpp -o search.o >/dev/null 2>&1 In file included from geomopt.h:31, from geomopt.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c geomopt.cpp -o geomopt.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c eng1_sf.cpp -o eng1_sf.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o moldyn.lo moldyn.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -fPIC -DPIC -o .libs/moldyn.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pop_ana.lo pop_ana.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -fPIC -DPIC -o .libs/pop_ana.o In file included from pop_ana.h:31, from pop_ana.cpp:22: eng1_qm.h: In member function 'virtual bool eng1_qm::SetTorsionConstraint(atom*, atom*, atom*, atom*, f64, f64, bool)': eng1_qm.h:128:155: warning: no return statement in function returning non-void [-Wreturn-type] 128 | virtual bool SetTorsionConstraint(atom *, atom *, atom *, atom *, f64, f64, bool) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ eng1_qm.h: In member function 'virtual bool eng1_qm::RemoveTorsionConstraint(atom*, atom*, atom*, atom*)': eng1_qm.h:129:142: warning: no return statement in function returning non-void [-Wreturn-type] 129 | virtual bool RemoveTorsionConstraint(atom *, atom *, atom *, atom *) { assertion_failed(__FILE__, __LINE__, "not yet implemented!"); } | ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c moldyn.cpp -o moldyn.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c pop_ana.cpp -o pop_ana.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sasaeval.lo sasaeval.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -fPIC -DPIC -o .libs/sasaeval.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\""/usr/share/locale"\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o resonance.lo resonance.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -fPIC -DPIC -o .libs/resonance.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c resonance.cpp -o resonance.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../src -I/usr/include/sc -I/usr/include/mpi -DLOCALE_DIR=\"/usr/share/locale\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/sc -I/usr/include/mpi -I/usr/lib/arm-linux-gnueabihf/openmpi/include -I/usr/lib/arm-linux-gnueabihf/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -c sasaeval.cpp -o sasaeval.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libghemical-3.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 5:1:0 -Wl,-z,relro -Wl,--as-needed -o libghemical.la -rpath /usr/lib/arm-linux-gnueabihf atom.lo bond.lo constraint.lo model.lo engine.lo typerule.lo utility.lo chn_info.lo seqbuild.lo mfinder.lo eng1_qm.lo eng1_qm_mpqc.lo eng1_qm_mopac.lo eng1_mm.lo eng1_mm_tripos52.lo tab_mm_tripos52.lo eng1_mm_default.lo tab_mm_default.lo eng1_mm_prmfit.lo tab_mm_prmfit.lo eng1_sf.lo eng1_sf_ua.lo eng1_sf_cg.lo eng2_qm_mm.lo notice.lo conjgrad.lo intcrd.lo search.lo geomopt.lo moldyn.lo pop_ana.lo sasaeval.lo resonance.lo -llapack -lblas -lm -L/usr/lib -lmopac7 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi_cxx -lmpi libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crti.o /usr/lib/gcc/arm-linux-gnueabihf/12/crtbeginS.o .libs/atom.o .libs/bond.o .libs/constraint.o .libs/model.o .libs/engine.o .libs/typerule.o .libs/utility.o .libs/chn_info.o .libs/seqbuild.o .libs/mfinder.o .libs/eng1_qm.o .libs/eng1_qm_mpqc.o .libs/eng1_qm_mopac.o .libs/eng1_mm.o .libs/eng1_mm_tripos52.o .libs/tab_mm_tripos52.o .libs/eng1_mm_default.o .libs/tab_mm_default.o .libs/eng1_mm_prmfit.o .libs/tab_mm_prmfit.o .libs/eng1_sf.o .libs/eng1_sf_ua.o .libs/eng1_sf_cg.o .libs/eng2_qm_mm.o .libs/notice.o .libs/conjgrad.o .libs/intcrd.o .libs/search.o .libs/geomopt.o .libs/moldyn.o .libs/pop_ana.o .libs/sasaeval.o .libs/resonance.o -llapack -lblas -L/usr/lib -lmopac7 -L/usr/lib/arm-linux-gnueabihf/openmpi/lib -lmpi_cxx -lmpi -L/usr/lib/gcc/arm-linux-gnueabihf/12 -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf -L/usr/lib/gcc/arm-linux-gnueabihf/12/../../.. -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc/arm-linux-gnueabihf/12/../../../arm-linux-gnueabihf/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,--as-needed -Wl,-soname -Wl,libghemical.so.5 -o .libs/libghemical.so.5.0.1 libtool: link: (cd ".libs" && rm -f "libghemical.so.5" && ln -s "libghemical.so.5.0.1" "libghemical.so.5") libtool: link: (cd ".libs" && rm -f "libghemical.so" && ln -s "libghemical.so.5.0.1" "libghemical.so") libtool: link: /usr/bin/ar cr .libs/libghemical.a atom.o bond.o constraint.o model.o engine.o typerule.o utility.o chn_info.o seqbuild.o mfinder.o eng1_qm.o eng1_qm_mpqc.o eng1_qm_mopac.o eng1_mm.o eng1_mm_tripos52.o tab_mm_tripos52.o eng1_mm_default.o tab_mm_default.o eng1_mm_prmfit.o tab_mm_prmfit.o eng1_sf.o eng1_sf_ua.o eng1_sf_cg.o eng2_qm_mm.o notice.o conjgrad.o intcrd.o search.o geomopt.o moldyn.o pop_ana.o sasaeval.o resonance.o libtool: link: ranlib .libs/libghemical.a libtool: link: ( cd ".libs" && rm -f "libghemical.la" && ln -s "../libghemical.la" "libghemical.la" ) make[3]: Leaving directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making all in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making all in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making all in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making all in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making all in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making all in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making all in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making all in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making all in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making all in po make[2]: Entering directory '/build/libghemical-3.0.0/po' file=`echo de | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file de.po file=`echo fi | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file fi.po file=`echo mk | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file mk.po file=`echo pt_BR | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file pt_BR.po file=`echo ru | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file ru.po file=`echo sq | sed 's,.*/,,'`.gmo \ && rm -f $file && /usr/bin/msgfmt -o $file sq.po make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' dh_auto_test make -j3 check "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/libghemical-3.0.0' Making check in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making check in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making check in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making check in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making check in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making check in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making check in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making check in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making check in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making check in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making check in po make[2]: Entering directory '/build/libghemical-3.0.0/po' INTLTOOL_EXTRACT="/usr/bin/intltool-extract" XGETTEXT="/usr/bin/xgettext" srcdir=. /usr/bin/intltool-update --gettext-package libghemical --pot rm -f missing notexist srcdir=. /usr/bin/intltool-update -m if [ -r missing -o -r notexist ]; then \ exit 1; \ fi make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --parallel --with autoreconf dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libghemical-3.0.0/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libghemical-3.0.0' Making install in src make[2]: Entering directory '/build/libghemical-3.0.0/src' make[3]: Entering directory '/build/libghemical-3.0.0/src' /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libghemical.la '/build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libghemical.so.5.0.1 /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libghemical.so.5.0.1 libghemical.so.5 || { rm -f libghemical.so.5 && ln -s libghemical.so.5.0.1 libghemical.so.5; }; }) libtool: install: (cd /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libghemical.so.5.0.1 libghemical.so || { rm -f libghemical.so && ln -s libghemical.so.5.0.1 libghemical.so; }; }) libtool: install: /usr/bin/install -c .libs/libghemical.lai /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libghemical.la libtool: install: /usr/bin/install -c .libs/libghemical.a /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libghemical.a libtool: install: chmod 644 /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libghemical.a libtool: install: ranlib /build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/libghemical.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/include/ghemical' /usr/bin/install -c -m 644 libghemicaldefine.h libghemical-features.h local_i18n.h typedef.h v3d.h atom.h bond.h constraint.h model.h engine.h typerule.h utility.h chn_info.h seqbuild.h mfinder.h eng1_qm.h eng1_qm_mpqc.h eng1_qm_mopac.h eng1_mm.h eng1_mm_tripos52.h tab_mm_tripos52.h eng1_mm_default.h tab_mm_default.h eng1_mm_prmfit.h tab_mm_prmfit.h eng1_sf.h eng1_sf_ua.h eng1_sf_cg.h eng2_qm_mm.h notice.h conjgrad.h intcrd.h search.h geomopt.h moldyn.h pop_ana.h sasaeval.h resonance.h '/build/libghemical-3.0.0/debian/tmp/usr/include/ghemical' make[3]: Leaving directory '/build/libghemical-3.0.0/src' make[2]: Leaving directory '/build/libghemical-3.0.0/src' Making install in bin make[2]: Entering directory '/build/libghemical-3.0.0/bin' Making install in amber make[3]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[4]: Entering directory '/build/libghemical-3.0.0/bin/amber' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/amber' /usr/bin/install -c -m 644 all_amino94_MOD.in all_aminoct94.in all_aminont94.in all_nuc94_MOD.in parm99_frcmod_ff99SB.dat '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/amber' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/amber' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/amber' Making install in builder make[3]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[4]: Entering directory '/build/libghemical-3.0.0/bin/builder' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/builder' /usr/bin/install -c -m 644 amino.txt nucleic.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/builder' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/builder' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/builder' Making install in param_mm make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' Making install in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/default' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/default' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/default' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/default' Making install in prmfit make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/prmfit' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/prmfit' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/prmfit' Making install in tripos52 make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/tripos52' /usr/bin/install -c -m 644 atomtypes.txt parameters1.txt parameters2.txt parameters3.txt parameters4.txt parameters5.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_mm/tripos52' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm/tripos52' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_mm' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_mm' Making install in param_sf make[3]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' Making install in default make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_sf/default' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_sf/default' /usr/bin/install -c -m 644 loopdip.txt looptor.txt nonbonded.txt '/build/libghemical-3.0.0/debian/tmp/usr/share/libghemical/3.0.0/param_sf/default' make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf/default' make[4]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[5]: Entering directory '/build/libghemical-3.0.0/bin/param_sf' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[4]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Leaving directory '/build/libghemical-3.0.0/bin/param_sf' make[3]: Entering directory '/build/libghemical-3.0.0/bin' make[4]: Entering directory '/build/libghemical-3.0.0/bin' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libghemical-3.0.0/bin' make[3]: Leaving directory '/build/libghemical-3.0.0/bin' make[2]: Leaving directory '/build/libghemical-3.0.0/bin' Making install in po make[2]: Entering directory '/build/libghemical-3.0.0/po' linguas="de fi mk pt_BR ru sq "; \ for lang in $linguas; do \ dir=/build/libghemical-3.0.0/debian/tmp/usr/share/locale/$lang/LC_MESSAGES; \ /bin/bash /build/libghemical-3.0.0/install-sh -d $dir; \ if test -r $lang.gmo; then \ /usr/bin/install -c -m 644 $lang.gmo $dir/libghemical.mo; \ echo "installing $lang.gmo as $dir/libghemical.mo"; \ else \ /usr/bin/install -c -m 644 ./$lang.gmo $dir/libghemical.mo; \ echo "installing ./$lang.gmo as" \ "$dir/libghemical.mo"; \ fi; \ if test -r $lang.gmo.m; then \ /usr/bin/install -c -m 644 $lang.gmo.m $dir/libghemical.mo.m; \ echo "installing $lang.gmo.m as $dir/libghemical.mo.m"; \ else \ if test -r ./$lang.gmo.m ; then \ /usr/bin/install -c -m 644 ./$lang.gmo.m \ $dir/libghemical.mo.m; \ echo "installing ./$lang.gmo.m as" \ "$dir/libghemical.mo.m"; \ else \ true; \ fi; \ fi; \ done installing de.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/de/LC_MESSAGES/libghemical.mo installing fi.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/fi/LC_MESSAGES/libghemical.mo installing mk.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/mk/LC_MESSAGES/libghemical.mo installing pt_BR.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo installing ru.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/ru/LC_MESSAGES/libghemical.mo installing sq.gmo as /build/libghemical-3.0.0/debian/tmp/usr/share/locale/sq/LC_MESSAGES/libghemical.mo make[2]: Leaving directory '/build/libghemical-3.0.0/po' make[2]: Entering directory '/build/libghemical-3.0.0' make[3]: Entering directory '/build/libghemical-3.0.0' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libghemical.pc '/build/libghemical-3.0.0/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[3]: Leaving directory '/build/libghemical-3.0.0' make[2]: Leaving directory '/build/libghemical-3.0.0' make[1]: Leaving directory '/build/libghemical-3.0.0' debian/rules override_dh_install make[1]: Entering directory '/build/libghemical-3.0.0' dh_install make[1]: Leaving directory '/build/libghemical-3.0.0' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism Normalized debian/libghemical-data/usr/share/locale/sq/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/pt_BR/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/fi/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/mk/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/ru/LC_MESSAGES/libghemical.mo Normalized debian/libghemical-data/usr/share/locale/de/LC_MESSAGES/libghemical.mo dh_compress dh_fixperms dh_missing dh_missing: warning: usr/lib/arm-linux-gnueabihf/libghemical.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libghemical-data (2), libghemical-dev (4), libghemical5v5 (2) * dh_installdocs: libghemical-data (0), libghemical-dev (0), libghemical5v5 (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "arm-linux-gnueabihf", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: symbol _ZTVN2sc28KeyValValueRefDescribedClassE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc13ShmMessageGrpC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc11SCMatrixKit21set_default_matrixkitERKNS_3RefIS0_EE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc14RenderedSphereC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc10MessageGrp22set_default_messagegrpERKNS_3RefIS0_EE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZTIN2sc14DescribedClassE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc14SCVectordoubleD1Ev used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc8GDIISOptC1ERKNS_3RefINS_6KeyValEEE used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc6KeyVal6existsEPKc used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN2sc8SCFormIO20set_default_basenameEPKc used by debian/libghemical5v5/usr/lib/arm-linux-gnueabihf/libghemical.so.5.0.1 found in none of the libraries dpkg-shlibdeps: warning: 86 other similar warnings have been skipped (use -v to see them all) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libghemical-dev' in '../libghemical-dev_3.0.0-4.3_armhf.deb'. dpkg-deb: building package 'libghemical5v5-dbgsym' in '../libghemical5v5-dbgsym_3.0.0-4.3_armhf.deb'. dpkg-deb: building package 'libghemical5v5' in '../libghemical5v5_3.0.0-4.3_armhf.deb'. dpkg-deb: building package 'libghemical-data' in '../libghemical-data_3.0.0-4.3_all.deb'. dpkg-genbuildinfo --build=binary -O../libghemical_3.0.0-4.3_armhf.buildinfo dpkg-genchanges --build=binary -O../libghemical_3.0.0-4.3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27959 and its subdirectories I: Current time: Fri Jun 9 06:57:56 -12 2023 I: pbuilder-time-stamp: 1686337076 Fri Jun 9 18:58:26 UTC 2023 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Fri Jun 9 18:58:26 UTC 2023 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Fri Jun 9 19:04:59 UTC 2023 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Fri Jun 9 19:05:03 UTC 2023 I: libghemical_3.0.0-4.3_armhf.changes: Format: 1.8 Date: Wed, 03 Jun 2020 12:20:43 +0100 Source: libghemical Binary: libghemical-data libghemical-dev libghemical5v5 libghemical5v5-dbgsym Architecture: all armhf Version: 3.0.0-4.3 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Alastair McKinstry Description: libghemical-data - Molecular Modelling Library (data files) libghemical-dev - Molecular Modelling Library (development files) libghemical5v5 - Molecular Modelling Library Changes: libghemical (3.0.0-4.3) unstable; urgency=medium . * Non-maintainer upload; source-only upload * Use debhelper-compat = 12, from level 7 * drop --with autoreconf ; now automatic * dh_install no longer needs --list-missing * Remove obsolete Dm-Upload-Allowed * Standards-Version: 4.5.0 * Update vcs clauses to point to salsa.d.o Checksums-Sha1: 7791d1051f7e3d2f864f0eb3f0f0f127f10e5362 106704 libghemical-data_3.0.0-4.3_all.deb dd0fe3f8266c9b1664c3ea48996ee7f85e32c4c3 390564 libghemical-dev_3.0.0-4.3_armhf.deb 2e7d695bc760e3e3c773a4acce6f86bb3381b02c 3245276 libghemical5v5-dbgsym_3.0.0-4.3_armhf.deb 12f4a5c5d577c08b2cca37a16dc16f86e7e70ca2 307764 libghemical5v5_3.0.0-4.3_armhf.deb aab6b44833f67ceb7fab32f67703b999b2ac2bbd 10789 libghemical_3.0.0-4.3_armhf.buildinfo Checksums-Sha256: 2014cfaa4e2a63e02f745eb10dde0c2209ceb93f5384c0dfae611f31bf61abca 106704 libghemical-data_3.0.0-4.3_all.deb db0a4927ae157c1cf624ec402913209fef8d771a63910755bd08b7b608917755 390564 libghemical-dev_3.0.0-4.3_armhf.deb 08d48bcdaff3ef7eb7d92281fb5e74415314e74efa7d279f79773c5de3e279f6 3245276 libghemical5v5-dbgsym_3.0.0-4.3_armhf.deb d2e9da64011b1170804a084338f0e08502603faa7699fc95f2593e6ed6bf8d98 307764 libghemical5v5_3.0.0-4.3_armhf.deb 909200907958934904cdf7b340e12c6c249c6d85c625ec204138b5874cee909f 10789 libghemical_3.0.0-4.3_armhf.buildinfo Files: 7d04670bc2caccfe0f5f81a99b2a1cfa 106704 science optional libghemical-data_3.0.0-4.3_all.deb 6d4dfe7694f6ee7f86fe9fc79b04789f 390564 libdevel optional libghemical-dev_3.0.0-4.3_armhf.deb c2cadb5e31158c84ddb8c7bef4162565 3245276 debug optional libghemical5v5-dbgsym_3.0.0-4.3_armhf.deb e96e294d4270107895b98ee6e35c8dd3 307764 libs optional libghemical5v5_3.0.0-4.3_armhf.deb 36d1c2784b2619c492f0fed021a715ee 10789 science optional libghemical_3.0.0-4.3_armhf.buildinfo Fri Jun 9 19:05:04 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/libghemical_3.0.0-4.3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/libghemical_3.0.0-4.3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/libghemical_3.0.0-4.3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/b1/libghemical_3.0.0-4.3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.w8H2OceB/b2/libghemical_3.0.0-4.3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.438s) 0.438s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.084s) 0.084s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Fri Jun 9 19:05:05 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 9 19:05:06 UTC 2023 I: libghemical from bookworm built successfully and reproducibly on armhf. Fri Jun 9 19:05:07 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jun 9 19:05:07 UTC 2023 I: Submitting 12K b1/libghemical_3.0.0-4.3_armhf.buildinfo.asc Fri Jun 9 19:05:09 UTC 2023 I: Submitting 12K b2/libghemical_3.0.0-4.3_armhf.buildinfo.asc Fri Jun 9 19:05:09 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 9 19:05:09 UTC 2023 I: Done submitting .buildinfo files. Fri Jun 9 19:05:09 UTC 2023 I: Removing signed libghemical_3.0.0-4.3_armhf.buildinfo.asc files: removed './b1/libghemical_3.0.0-4.3_armhf.buildinfo.asc' removed './b2/libghemical_3.0.0-4.3_armhf.buildinfo.asc'