Wed May 10 18:24:41 UTC 2023 I: starting to build python-biopython/bookworm/armhf on jenkins on '2023-05-10 18:24' Wed May 10 18:24:41 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_36/1517/console.log Wed May 10 18:24:41 UTC 2023 I: Downloading source for bookworm/python-biopython=1.80+dfsg-4 --2023-05-10 18:24:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-biopython/python-biopython_1.80%2bdfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2644 (2.6K) [text/prs.lines.tag] Saving to: ‘python-biopython_1.80+dfsg-4.dsc’ 0K .. 100% 90.1M=0s 2023-05-10 18:24:42 (90.1 MB/s) - ‘python-biopython_1.80+dfsg-4.dsc’ saved [2644/2644] Wed May 10 18:24:42 UTC 2023 I: python-biopython_1.80+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-biopython Binary: python3-biopython, python-biopython-doc, python3-biopython-sql Architecture: any all Version: 1.80+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille , Étienne Mollier Homepage: https://biopython.org Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-biopython Vcs-Git: https://salsa.debian.org/med-team/python-biopython.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, python3-all, python3-setuptools Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy , flex, python3-reportlab , hevea , texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa , clustalo , clustalw , dialign , dssp , emboss , fasttree , mafft , muscle3 [i386 amd64 x32] , ncbi-blast+ , phylip , phyml [any-amd64 any-i386] , prank , probcons , python3-networkx , python3-mysqldb , python3-matplotlib , python3-mmtf , python3-pil , python3-rdflib , python3-renderpm , python3-psycopg2 , python3-pygments , python3-scipy , python3-setuptools, python3-unittest2 , raxml [any-amd64 any-i386] , samtools , t-coffee , wise Package-List: python-biopython-doc deb doc optional arch=all python3-biopython deb python optional arch=any python3-biopython-sql deb python optional arch=all Checksums-Sha1: c6351b33b1c214687eb27908202c47e9bb607c03 10665048 python-biopython_1.80+dfsg.orig.tar.xz b8095053abb0043b0f9ec9b38c60b1af6c6b0c25 20792 python-biopython_1.80+dfsg-4.debian.tar.xz Checksums-Sha256: 33f55619b952b7ae13539ba898aa4d24a2326b649ad581f185f6f706426fdd02 10665048 python-biopython_1.80+dfsg.orig.tar.xz 873fa98be7d454e400c99fb29aca9669ab81051a916a5efbd57e563ba6d44a2d 20792 python-biopython_1.80+dfsg-4.debian.tar.xz Files: 0016b019c8961b2ce17e245a3b44ee9a 10665048 python-biopython_1.80+dfsg.orig.tar.xz 5e36997cd80efd31c9751e16ffd976b6 20792 python-biopython_1.80+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY62h9AAKCRAqJ5BL1yQ+ 2vrYAP9Yvy4Y+F6HzCZaCYLcwEnRz7jCfyxffGRAj2/VPj2ETwD7BkElH+HGrEFM ZZloIOhbonInsY3XAoj5nhheeYvSuQ4= =yFvE -----END PGP SIGNATURE----- Wed May 10 18:24:42 UTC 2023 I: Checking whether the package is not for us Wed May 10 18:24:42 UTC 2023 I: Starting 1st build on remote node jtx1b-armhf-rb.debian.net. Wed May 10 18:24:42 UTC 2023 I: Preparing to do remote build '1' on jtx1b-armhf-rb.debian.net. Wed May 10 19:07:41 UTC 2023 I: Deleting $TMPDIR on jtx1b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 10 06:24:50 -12 2023 I: pbuilder-time-stamp: 1683743090 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-biopython_1.80+dfsg-4.dsc] I: copying [./python-biopython_1.80+dfsg.orig.tar.xz] I: copying [./python-biopython_1.80+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 29 02:19:32 2022 -12 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-biopython_1.80+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting python-biopython in python-biopython-1.80+dfsg dpkg-source: info: unpacking python-biopython_1.80+dfsg.orig.tar.xz dpkg-source: info: unpacking python-biopython_1.80+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_mathml-qname.patch dpkg-source: info: applying privacy_breach.patch dpkg-source: info: applying privacy_breach_ie9.patch dpkg-source: info: applying fix-use-of-unversioned-python.patch dpkg-source: info: applying reproduciblebuild.patch dpkg-source: info: applying croak-on-muscle5.patch dpkg-source: info: applying muscle3.patch dpkg-source: info: applying port_tutorial_to_muscle3.patch dpkg-source: info: applying numpy-1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6774/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8c7e19b4433f4589a31b13719b68b1d8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6774' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/pbuilderrc_E6DS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/b1 --logfile b1/build.log python-biopython_1.80+dfsg-4.dsc' SUDO_GID='114' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux jtx1b 5.10.0-22-arm64 #1 SMP Debian 5.10.178-3 (2023-04-22) aarch64 GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/6774/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, flex, python3-reportlab, hevea, texlive-latex-base, texlive-latex-extra, texlive-fonts-recommended, bwa, clustalo, clustalw, dialign, dssp, emboss, fasttree, mafft, ncbi-blast+, phylip, prank, probcons, python3-networkx, python3-mysqldb, python3-matplotlib, python3-mmtf, python3-pil, python3-rdflib, python3-renderpm, python3-psycopg2, python3-pygments, python3-scipy, python3-setuptools, python3-unittest2, samtools, t-coffee, wise dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on python3-reportlab; however: Package python3-reportlab is not installed. pbuilder-satisfydepends-dummy depends on hevea; however: Package hevea is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on bwa; however: Package bwa is not installed. pbuilder-satisfydepends-dummy depends on clustalo; however: Package clustalo is not installed. pbuilder-satisfydepends-dummy depends on clustalw; however: Package clustalw is not installed. pbuilder-satisfydepends-dummy depends on dialign; however: Package dialign is not installed. pbuilder-satisfydepends-dummy depends on dssp; however: Package dssp is not installed. pbuilder-satisfydepends-dummy depends on emboss; however: Package emboss is not installed. pbuilder-satisfydepends-dummy depends on fasttree; however: Package fasttree is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on phylip; however: Package phylip is not installed. pbuilder-satisfydepends-dummy depends on prank; however: Package prank is not installed. pbuilder-satisfydepends-dummy depends on probcons; however: Package probcons is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-mysqldb; however: Package python3-mysqldb is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-mmtf; however: Package python3-mmtf is not installed. pbuilder-satisfydepends-dummy depends on python3-pil; however: Package python3-pil is not installed. pbuilder-satisfydepends-dummy depends on python3-rdflib; however: Package python3-rdflib is not installed. pbuilder-satisfydepends-dummy depends on python3-renderpm; however: Package python3-renderpm is not installed. pbuilder-satisfydepends-dummy depends on python3-psycopg2; however: Package python3-psycopg2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pygments; however: Package python3-pygments is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-unittest2; however: Package python3-unittest2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on t-coffee; however: Package t-coffee is not installed. pbuilder-satisfydepends-dummy depends on wise; however: Package wise is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} bwa{a} clustalo{a} clustalw{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dialign{a} dssp{a} dwz{a} emboss{a} emboss-data{a} emboss-lib{a} fasttree{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} hevea{a} hicolor-icon-theme{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libargtable2-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif15{a} libblas3{a} libboost-regex1.74.0{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcifpp-data{a} libcifpp5{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdav1d6{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libharfbuzz0b{a} libheif1{a} libhpdf-2.3.0{a} libhts3{a} libhtscodecs2{a} libice6{a} libicu72{a} libidn12{a} libijs-0.35{a} libimagequant0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libkpathsea6{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblmdb0{a} liblqr-1-0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmagickcore-6.q16-6{a} libmagickwand-6.q16-6{a} libmariadb3{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libncurses6{a} libnetpbm11{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpcre3{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpq5{a} libpsl5{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsvtav1enc1{a} libsynctex2{a} libtcl8.6{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6{a} libyuv0{a} libzzip-0-13{a} m4{a} mafft{a} mailcap{a} man-db{a} mariadb-common{a} media-types{a} mime-support{a} mysql-common{a} ncbi-blast+{a} ncbi-data{a} netpbm{a} phylip{a} po-debconf{a} poppler-data{a} prank{a} preview-latex-style{a} probcons{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-isodate{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mmtf{a} python3-mpmath{a} python3-msgpack{a} python3-mysqldb{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-psycopg2{a} python3-pygments{a} python3-pyparsing{a} python3-rdflib{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-unittest2{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} t-coffee{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tk8.6-blt2.5{a} ucf{a} unicode-data{a} wise{a} wise-data{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: amap-align ca-certificates curl dbus default-jre dialign-tx dvisvgm fonts-droid-fallback fsa gsfonts isympy-common javascript-common kalign libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libldap-common libltdl-dev libmagickcore-6.q16-6-extra libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libsoap-lite-perl libspreadsheet-parseexcel-perl libwww-perl libx11-protocol-perl libxml-simple-perl lmodern lynx muscle mustang poa primer3 proda publicsuffix python3-bs4 python3-gdal python3-html5lib python3-olefile python3-pydot python3-pygraphviz python3-sparqlwrapper python3-yaml ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk tm-align wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 269 newly installed, 0 to remove and 0 not upgraded. Need to get 305 MB of archives. After unpacking 1441 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf flex armhf 2.6.4-8.1 [424 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libfftw3-double3 armhf 3.3.10-1 [325 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 14 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf libaom3 armhf 3.6.0-1 [1369 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libdav1d6 armhf 1.0.0-2 [256 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libde265-0 armhf 1.0.11-1 [143 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libx265-199 armhf 3.5-2+b1 [580 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libheif1 armhf 1.15.1-1 [183 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf liblqr-1-0 armhf 0.4.2-2.1 [23.5 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libltdl7 armhf 2.4.7-5 [390 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-1+b1 [170 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-5 [295 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.1 [98.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.1 [105 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf imagemagick-6-common all 8:6.9.11.60+dfsg-1.6 [165 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libmagickcore-6.q16-6 armhf 8:6.9.11.60+dfsg-1.6 [1634 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libmagickwand-6.q16-6 armhf 8:6.9.11.60+dfsg-1.6 [402 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf poppler-data all 0.4.12-1 [1601 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf mailcap all 3.70+nmu1 [32.0 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf mime-support all 3.66 [10.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 58 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [489 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf bwa armhf 0.7.17-7+b2 [195 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libargtable2-0 armhf 13-1.1 [15.8 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf clustalo armhf 1.2.4-7 [227 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf clustalw armhf 2.1+lgpl-7 [256 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 90 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 92 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf dialign armhf 2.2.1-11 [137 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf libboost-regex1.74.0 armhf 1.74.0+ds1-20 [432 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libcifpp-data all 5.0.7.1-1 [452 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libcifpp5 armhf 5.0.7.1-1 [691 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf dssp armhf 4.2.2-2 [600 kB] Get: 106 http://deb.debian.org/debian bookworm/main armhf libabsl20220623 armhf 20220623.1-1 [365 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libgav1-1 armhf 0.18.0-1+b1 [284 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf librav1e0 armhf 0.5.1-6 [514 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libsvtav1enc1 armhf 1.4.1+dfsg-1 [893 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libyuv0 armhf 0.0~git20230123.b2528b0-1 [85.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libavif15 armhf 0.11.1-1 [84.8 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libxpm4 armhf 1:3.5.12-1.1 [42.3 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libgd3 armhf 2.3.3-9 [103 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libhpdf-2.3.0 armhf 2.3.0+dfsg-1+b1 [331 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf mysql-common all 5.8+1.1.0 [6636 B] Get: 116 http://deb.debian.org/debian bookworm/main armhf mariadb-common all 1:10.11.2-1 [22.4 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libmariadb3 armhf 1:10.11.2-1 [149 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf libpq5 armhf 15.2-2 [166 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf emboss-lib armhf 6.6.0+dfsg-12 [2473 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf emboss-data all 6.6.0+dfsg-12 [61.1 MB] Get: 124 http://deb.debian.org/debian bookworm/main armhf emboss armhf 6.6.0+dfsg-12 [1029 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf fasttree armhf 2.1.11-2 [169 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf fonts-lyx all 2.3.7-1 [186 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf libgs-common all 10.0.0~dfsg-11 [148 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf libgs10-common all 10.0.0~dfsg-11 [586 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf libavahi-common-data armhf 0.8-10 [107 kB] Get: 131 http://deb.debian.org/debian bookworm/main armhf libavahi-common3 armhf 0.8-10 [38.3 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libdbus-1-3 armhf 1.14.6-1 [177 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libavahi-client3 armhf 0.8-10 [41.6 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libcups2 armhf 2.4.2-3 [209 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libidn12 armhf 1.41-1 [81.1 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libijs-0.35 armhf 0.35-15 [14.8 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libjbig2dec0 armhf 0.19-3 [59.1 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 140 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libgs10 armhf 10.0.0~dfsg-11 [2101 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf ghostscript armhf 10.0.0~dfsg-11 [56.4 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libnetpbm11 armhf 2:11.01.00-2 [157 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf netpbm armhf 2:11.01.00-2 [1935 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf tex-common all 6.18 [32.5 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 148 http://deb.debian.org/debian bookworm/main armhf libkpathsea6 armhf 2022.20220321.62855-5 [142 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libptexenc1 armhf 2022.20220321.62855-5 [40.1 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libsynctex2 armhf 2022.20220321.62855-5 [46.4 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libtexlua53-5 armhf 2022.20220321.62855-5 [80.4 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libtexluajit2 armhf 2022.20220321.62855-5 [184 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 156 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 157 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libteckit0 armhf 2.5.11+ds1-1+b1 [257 kB] Get: 161 http://deb.debian.org/debian bookworm/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libxaw7 armhf 2:1.0.14-1 [167 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libxi6 armhf 2:1.8-1+b1 [78.6 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf texlive-binaries armhf 2022.20220321.62855-5 [8103 kB] Get: 166 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf texlive-base all 2022.20230122-3 [21.9 MB] Get: 168 http://deb.debian.org/debian bookworm/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf imagemagick-6.q16 armhf 8:6.9.11.60+dfsg-1.6 [338 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf imagemagick armhf 8:6.9.11.60+dfsg-1.6 [122 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf hevea armhf 2.36-1 [1768 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libapache-pom-java all 29-2 [5276 B] Get: 173 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libcommons-logging-java all 1.2-3 [62.4 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-9 [343 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf libexpat1-dev armhf 2.5.0-1 [134 kB] Get: 182 http://deb.debian.org/debian bookworm/main armhf libfontbox-java all 1:1.8.16-2 [211 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 184 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libhtscodecs2 armhf 1.3.0-4 [60.4 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf libhts3 armhf 1.16+ds-3 [375 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [25.0 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf liblmdb0 armhf 0.9.24-1 [38.7 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libmbedcrypto7 armhf 2.28.3-1 [245 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf libmbedx509-1 armhf 2.28.3-1 [124 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf libmbedtls14 armhf 2.28.3-1 [155 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-2 [81.0 kB] Get: 199 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf libpython3.11 armhf 3.11.2-6 [1710 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf libpython3.11-dev armhf 3.11.2-6 [3518 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf libpython3-dev armhf 3.11.2-1+b1 [9556 B] Get: 205 http://deb.debian.org/debian bookworm/main armhf libpython3-all-dev armhf 3.11.2-1+b1 [1068 B] Get: 206 http://deb.debian.org/debian bookworm/main armhf libqhull-r8.0 armhf 2020.2-5 [224 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 208 http://deb.debian.org/debian bookworm/main armhf libxslt1.1 armhf 1.1.35-1 [223 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf mafft armhf 7.505-1 [784 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf ncbi-blast+ armhf 2.12.0+ds-3+b1 [10.3 MB] Get: 212 http://deb.debian.org/debian bookworm/main armhf phylip armhf 1:3.697+dfsg-2 [754 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf prank armhf 0.0.170427+dfsg-3 [342 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf preview-latex-style all 12.2-1 [201 kB] Get: 215 http://deb.debian.org/debian bookworm/main armhf probcons armhf 1.12-14 [106 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 217 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 218 http://deb.debian.org/debian bookworm/main armhf python3.11-dev armhf 3.11.2-6 [615 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf python3-dev armhf 3.11.2-1+b1 [26.2 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf python3-all-dev armhf 3.11.2-1+b1 [1076 B] Get: 221 http://deb.debian.org/debian bookworm/main armhf python3-appdirs all 1.4.4-3 [13.0 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf python3-attr all 22.2.0-1 [65.4 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf python3-brotli armhf 1.0.9-2+b6 [274 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf python3-contourpy armhf 1.0.7-1+b1 [146 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf python3-cycler all 0.11.0-1 [8020 B] Get: 228 http://deb.debian.org/debian bookworm/main armhf python3-six all 1.16.0-4 [17.5 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf python3-dateutil all 2.8.2-2 [78.3 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf python3-decorator all 5.1.1-3 [14.9 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf python3-scipy armhf 1.10.1-2 [13.8 MB] Get: 232 http://deb.debian.org/debian bookworm/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 233 http://deb.debian.org/debian bookworm/main armhf python3-mpmath all 1.2.1-2 [418 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf python3-sympy all 1.11.1-1 [4358 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf python3-tz all 2022.7.1-3 [30.1 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf python3-fs all 2.4.16-2 [95.2 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf python3-lxml armhf 4.9.2-1+b1 [1082 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b2 [23.3 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf unicode-data all 15.0.0-1 [7984 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf python3-fonttools armhf 4.38.0-1+b1 [989 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf python3-isodate all 0.6.1-1 [25.3 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf python3-kiwisolver armhf 1.4.4-1+b1 [50.7 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf python3-tk armhf 3.11.2-3 [95.4 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf python3-pil.imagetk armhf 9.4.0-1.1+b1 [73.9 kB] Get: 246 http://deb.debian.org/debian bookworm/main armhf python3-pyparsing all 3.0.9-1 [138 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf python3-matplotlib armhf 3.6.3-1+b1 [6784 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf python3-msgpack armhf 1.0.3-2+b1 [62.6 kB] Get: 250 http://deb.debian.org/debian bookworm/main armhf python3-mmtf all 1.1.3-1 [17.0 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf python3-mysqldb armhf 1.4.6-2+b1 [46.9 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf python3-networkx all 2.8.8-1 [1425 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf python3-psycopg2 armhf 2.9.5-1+b1 [110 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf python3-pygments all 2.14.0+dfsg-1 [783 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf python3-rdflib all 6.1.1-1 [385 kB] Get: 256 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB] Get: 258 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf python3-setuptools all 66.1.1-1 [521 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf python3-unittest2 all 1.1.0-9 [75.8 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf samtools armhf 1.16.1-1 [575 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf t-coffee armhf 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [878 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf texlive-fonts-recommended all 2022.20230122-3 [4988 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf texlive-latex-base all 2022.20230122-3 [1182 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf texlive-latex-recommended all 2022.20230122-3 [8880 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf texlive-pictures all 2022.20230122-3 [15.8 MB] Get: 267 http://deb.debian.org/debian bookworm/main armhf texlive-latex-extra all 2022.20230122-4 [19.2 MB] Get: 268 http://deb.debian.org/debian bookworm/main armhf wise-data all 2.4.1-23 [78.2 kB] Get: 269 http://deb.debian.org/debian bookworm/main armhf wise armhf 2.4.1-23 [792 kB] Fetched 305 MB in 27s (11.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19329 files and directories currently installed.) Preparing to unpack .../00-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package flex. Preparing to unpack .../01-flex_2.6.4-8.1_armhf.deb ... Unpacking flex (2.6.4-8.1) ... Selecting previously unselected package libfftw3-double3:armhf. Preparing to unpack .../02-libfftw3-double3_3.3.10-1_armhf.deb ... Unpacking libfftw3-double3:armhf (3.3.10-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../03-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../04-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../05-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../06-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../07-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../08-libfontenc1_1%3a1.1.4-1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.4-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../09-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../10-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../11-xfonts-utils_1%3a7.7+6_armhf.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../12-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../13-fontconfig-config_2.14.1-4_armhf.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../14-libfontconfig1_2.14.1-4_armhf.deb ... Unpacking libfontconfig1:armhf (2.14.1-4) ... Selecting previously unselected package libaom3:armhf. Preparing to unpack .../15-libaom3_3.6.0-1_armhf.deb ... Unpacking libaom3:armhf (3.6.0-1) ... Selecting previously unselected package libdav1d6:armhf. Preparing to unpack .../16-libdav1d6_1.0.0-2_armhf.deb ... Unpacking libdav1d6:armhf (1.0.0-2) ... Selecting previously unselected package libde265-0:armhf. Preparing to unpack .../17-libde265-0_1.0.11-1_armhf.deb ... Unpacking libde265-0:armhf (1.0.11-1) ... Selecting previously unselected package libx265-199:armhf. Preparing to unpack .../18-libx265-199_3.5-2+b1_armhf.deb ... Unpacking libx265-199:armhf (3.5-2+b1) ... Selecting previously unselected package libheif1:armhf. Preparing to unpack .../19-libheif1_1.15.1-1_armhf.deb ... Unpacking libheif1:armhf (1.15.1-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../20-libjbig0_2.1-6.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../21-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../22-liblcms2-2_2.14-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.14-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../23-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package liblqr-1-0:armhf. Preparing to unpack .../24-liblqr-1-0_0.4.2-2.1_armhf.deb ... Unpacking liblqr-1-0:armhf (0.4.2-2.1) ... Selecting previously unselected package libltdl7:armhf. Preparing to unpack .../25-libltdl7_2.4.7-5_armhf.deb ... Unpacking libltdl7:armhf (2.4.7-5) ... Selecting previously unselected package libopenjp2-7:armhf. Preparing to unpack .../26-libopenjp2-7_2.5.0-1+b1_armhf.deb ... Unpacking libopenjp2-7:armhf (2.5.0-1+b1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../27-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../28-liblerc4_4.0.0+ds-2_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../29-libwebp7_1.2.4-0.1_armhf.deb ... Unpacking libwebp7:armhf (1.2.4-0.1) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../30-libtiff6_4.5.0-5_armhf.deb ... Unpacking libtiff6:armhf (4.5.0-5) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../31-libwebpdemux2_1.2.4-0.1_armhf.deb ... Unpacking libwebpdemux2:armhf (1.2.4-0.1) ... Selecting previously unselected package libwebpmux3:armhf. Preparing to unpack .../32-libwebpmux3_1.2.4-0.1_armhf.deb ... Unpacking libwebpmux3:armhf (1.2.4-0.1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../33-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../34-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../35-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../36-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../37-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../38-libx11-6_2%3a1.8.4-2_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.4-2) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../39-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../40-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../41-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../42-imagemagick-6-common_8%3a6.9.11.60+dfsg-1.6_all.deb ... Unpacking imagemagick-6-common (8:6.9.11.60+dfsg-1.6) ... Selecting previously unselected package libmagickcore-6.q16-6:armhf. Preparing to unpack .../43-libmagickcore-6.q16-6_8%3a6.9.11.60+dfsg-1.6_armhf.deb ... Unpacking libmagickcore-6.q16-6:armhf (8:6.9.11.60+dfsg-1.6) ... Selecting previously unselected package libmagickwand-6.q16-6:armhf. 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-biopython-1.80+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-biopython_1.80+dfsg-4_source.changes dpkg-buildpackage: info: source package python-biopython dpkg-buildpackage: info: source version 1.80+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-biopython-1.80+dfsg' dh_auto_clean pybuild --clean -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py clean running clean removing '/build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; cd Doc && make distclean make[2]: Entering directory '/build/python-biopython-1.80+dfsg/Doc' ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux ( for f in ; do make distclean -C $f ; done ) rm -f version.sh rm -f biopdb_faq.pdf rm -f Tutorial.pdf rm -f Tutorial.html rm -f Tutorial.txt rm -f *_motif.gif #output from hacha make[2]: Leaving directory '/build/python-biopython-1.80+dfsg/Doc' rm -f Doc/install/Installation.pdf rm -f Doc/install/Installation.txt rm -f Doc/install/Installation.html rm -f Doc/Tutorial.pdf Doc/biopdb_faq.pdf rm -f Doc/Tutorial/*.aux find Doc -name "*.pygtex" -o -name "*.pygstyle" -delete rm -rf biopython.egg-info rm -rf .pybuild if [ -d Tests_avoid ] ; then \ mv Tests_avoid/* Tests ; \ rmdir Tests_avoid ; \ fi rm -rf debian/tmp_tests make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars debian/files rm -fr -- debian/python3-biopython/ debian/tmp/ debian/python-biopython-doc/ debian/python3-biopython-sql/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.11 I: pybuild base:240: python3.11 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-biopython-1.80+dfsg' dh_auto_build pybuild --build -i python{version} -p 3.11 I: pybuild base:240: /usr/bin/python3 setup.py build running build running build_py creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/MarkovModel.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/Seq.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqFeature.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/kNN.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/LogisticRegression.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/File.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/NaiveBayes.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/bgzf.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/pairwise2.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/MaxEntropy.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/_utils.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/SeqRecord.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy copying Bio/Affy/CelFile.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/phylip.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/msf.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/sam.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bed.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigpsl.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/emboss.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/nexus.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/maf.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/a2m.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/hhr.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/AlignInfo.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/mauve.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/fasta.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigbed.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/stockholm.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/clustal.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/interfaces.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/tabular.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/exonerate.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/bigmaf.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align copying Bio/Align/psl.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Alphabet copying Bio/Alphabet/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Alphabet creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Application copying Bio/Application/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Application creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIXML.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Applications.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast copying Bio/Blast/Record.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/CAPS copying Bio/CAPS/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/CAPS creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonalignment.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign copying Bio/codonalign/codonseq.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Compass copying Bio/Compass/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Compass creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/PDBData.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/IUPACData.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/SCOPData.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data copying Bio/Data/CodonTable.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Applications.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss copying Bio/Emboss/Primer3.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez copying Bio/Entrez/Parser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Scanner.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/utils.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank copying Bio/GenBank/Record.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo copying Bio/Geo/Record.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Comparative.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/Distribution.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/MarkovModel.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Trainer.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM copying Bio/HMM/Utilities.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG copying Bio/KEGG/REST.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Map creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Medline copying Bio/Medline/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Medline creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/alignace.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/minimal.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/meme.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/transfac.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/matrix.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/xms.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/clusterbuster.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/mast.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/pfm.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/motifs/thresholds.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/StandardData.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nodes.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Nexus.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/Nexus/Trees.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/NOEtools.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR copying Bio/NMR/xpktools.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway copying Bio/Pathway/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep copying Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NACCESS.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/HSExposure.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBParser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SCADIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Polypeptide.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Superimposer.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/internal_coords.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Structure.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PSEA.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/vectors.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Atom.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/DSSP.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/qcprot.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Entity.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Model.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/mmcifio.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/SASA.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Residue.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/cealign.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_rebuild.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Selection.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Dice.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PDBList.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/PICIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/Chain.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/ic_data.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/phen_micro.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen copying Bio/PopGen/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction copying Bio/Restriction/Restriction.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Dom.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Raf.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Des.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Hie.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Cla.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP copying Bio/SCOP/Residues.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_index.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO copying Bio/SearchIO/_utils.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/_index.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Ace.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing copying Bio/Sequencing/Phd.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/TogoWS copying Bio/TogoWS/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/TogoWS creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Consensus.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NewickIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/Newick.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/CDAO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXML.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_io.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NexusIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/BaseTree.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_utils.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniGene copying Bio/UniGene/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniGene creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt copying Bio/UniProt/GOA.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/psw.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise copying Bio/Wise/dnal.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/__init__.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/DBUtils.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeq.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL copying BioSQL/Loader.py -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL running egg_info creating biopython.egg-info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt writing manifest file 'biopython.egg-info/SOURCES.txt' reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Align.substitution_matrices.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Align.substitution_matrices.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.DTDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.DTDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.DTDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.XSDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.XSDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.XSDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying Bio/cpairwise2module.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio copying Bio/Align/_aligners.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTN -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLASTP -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MEGABLAST -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/cluster.h -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster copying Bio/Cluster/clustermodule.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs creating /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs copying Bio/Nexus/cnexus.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus copying Bio/PDB/ccealignmodule.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/PDB/kdtrees.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build creating build/temp.linux-armhf-cpython-311 creating build/temp.linux-armhf-cpython-311/Bio creating build/temp.linux-armhf-cpython-311/Bio/Align arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Align/_aligners.c -o build/temp.linux-armhf-cpython-311/Bio/Align/_aligners.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/Align/_aligners.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so building 'Bio.cpairwise2' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/cpairwise2module.c -o build/temp.linux-armhf-cpython-311/Bio/cpairwise2module.o Bio/cpairwise2module.c: In function '_get_match_score': Bio/cpairwise2module.c:60:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] 60 | if(!(py_result = PyEval_CallObject(py_match_fn, py_arglist))) | ^~ In file included from /usr/include/python3.11/Python.h:95, from Bio/cpairwise2module.c:16: /usr/include/python3.11/ceval.h:27:43: note: declared here 27 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/cpairwise2module.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so building 'Bio.Nexus.cnexus' extension creating build/temp.linux-armhf-cpython-311/Bio/Nexus arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Nexus/cnexus.c -o build/temp.linux-armhf-cpython-311/Bio/Nexus/cnexus.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/Nexus/cnexus.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so building 'Bio.PDB.QCPSuperimposer.qcprotmodule' extension creating build/temp.linux-armhf-cpython-311/Bio/PDB creating build/temp.linux-armhf-cpython-311/Bio/PDB/QCPSuperimposer arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/PDB/QCPSuperimposer/qcprotmodule.c -o build/temp.linux-armhf-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/PDB/QCPSuperimposer/qcprotmodule.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so building 'Bio.motifs._pwm' extension creating build/temp.linux-armhf-cpython-311/Bio/motifs arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/motifs/_pwm.c -o build/temp.linux-armhf-cpython-311/Bio/motifs/_pwm.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/motifs/_pwm.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so building 'Bio.Cluster._cluster' extension creating build/temp.linux-armhf-cpython-311/Bio/Cluster arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/cluster.c -o build/temp.linux-armhf-cpython-311/Bio/Cluster/cluster.o arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/Cluster/clustermodule.c -o build/temp.linux-armhf-cpython-311/Bio/Cluster/clustermodule.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/Cluster/cluster.o build/temp.linux-armhf-cpython-311/Bio/Cluster/clustermodule.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so building 'Bio.PDB.kdtrees' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/PDB/kdtrees.c -o build/temp.linux-armhf-cpython-311/Bio/PDB/kdtrees.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/PDB/kdtrees.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so building 'Bio.PDB.ccealign' extension arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/PDB/ccealignmodule.c -o build/temp.linux-armhf-cpython-311/Bio/PDB/ccealignmodule.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/PDB/ccealignmodule.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so building 'Bio.SeqIO._twoBitIO' extension creating build/temp.linux-armhf-cpython-311/Bio/SeqIO arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c Bio/SeqIO/_twoBitIO.c -o build/temp.linux-armhf-cpython-311/Bio/SeqIO/_twoBitIO.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-biopython-1.80+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-cpython-311/Bio/SeqIO/_twoBitIO.o -L/usr/lib/arm-linux-gnueabihf -o /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so cd Doc && make make[2]: Entering directory '/build/python-biopython-1.80+dfsg/Doc' sed "s/\@VERSION\@/1.80/g" version.in > version.sh chmod +x version.sh hevea -exec ./version.sh -exec xxdate.exe -fix Tutorial.tex Exclude comment 'comment' ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined citation: 'dehoon2004' ./Tutorial/chapter_introduction.tex:98: Warning: Undefined citation: 'pritchard2006' ./Tutorial/chapter_introduction.tex:99: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_introduction.tex:100: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_introduction.tex:185: Warning: Undefined label: 'sec:seq-comparison' ./Tutorial/chapter_introduction.tex:191: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined label: 'sec:connecting-with-biological-databases' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:86: Warning: Undefined label: 'sec:mutable-seq' ./Tutorial/chapter_seq_objects.tex:155: Warning: Undefined label: 'sec:SeqRecord-format' ./Tutorial/chapter_seq_objects.tex:157: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:278: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_seq_objects.tex:353: Warning: Undefined label: 'sec:seq-module-functions' ./Tutorial/chapter_seq_objects.tex:469: Warning: Undefined 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itemize environment ./Tutorial/chapter_cookbook.tex:22: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:146: Warning: Undefined label: 'sec:Bio.SeqIO-and-StringIO' ./Tutorial/chapter_cookbook.tex:201: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:206: Warning: Undefined label: 'sec:SeqIO-reverse-complement' ./Tutorial/chapter_cookbook.tex:338: Warning: Undefined label: 'sec:seqio-index-getraw' ./Tutorial/chapter_cookbook.tex:443: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:457: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:480: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_cookbook.tex:643: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:646: Warning: Undefined citation: 'cock2010' ./Tutorial/chapter_cookbook.tex:801: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:823: Warning: Undefined label: 'sec:SeqIO-index' ./Tutorial/chapter_cookbook.tex:825: Warning: Undefined label: 'sec:SeqIO-sort' ./Tutorial/chapter_cookbook.tex:839: Warning: Undefined label: 'sec:SeqIO-conversion' ./Tutorial/chapter_cookbook.tex:905: Warning: Undefined label: 'sec:translation' ./Tutorial/chapter_cookbook.tex:1024: Warning: Undefined label: 'sec:gd_nice_example' ./Tutorial/chapter_cookbook.tex:1041: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_cookbook.tex:1418: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1421: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1425: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_cookbook.tex:1436: Warning: Undefined label: 'sec:consensus' ./Tutorial/chapter_cookbook.tex:1437: Warning: Undefined label: 'sec:pssm' ./Tutorial/chapter_cookbook.tex:1438: Warning: Undefined label: 'sec:getting_info_content' ./Tutorial/chapter_cookbook.tex:1439: Warning: Undefined label: 'sec:sub_matrix' ./Tutorial/chapter_cookbook.tex:1445: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1538: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1538: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1565: Warning: Undefined label: 'sec:summary_info' ./Tutorial/chapter_cookbook.tex:1617: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1626: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1626: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1640: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_cookbook.tex:1748: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_testing.tex:55: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_testing.tex:282: Warning: Undefined label: 'sec:doctest' ./Tutorial/chapter_contributing.tex:32: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:85: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_contributing.tex:101: Warning: Undefined label: 'chapter:testing' ./Tutorial/chapter_appendix.tex:91: Warning: Undefined label: 'sec:SeqIO_compressed' HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:278: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:326: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:581: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:955: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2496: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2932: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:3379: Warning: Suppressing nested a element ./Tutorial/chapter_entrez.tex:1065: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1068: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1159: Warning: '_' occurring outside math mode ./Tutorial/chapter_entrez.tex:1159: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:343: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:683: 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./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:409: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:485: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:591: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:231: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:233: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_phenotype.tex:235: Warning: Optional argument to \item in itemize environment ./Tutorial/chapter_cookbook.tex:1421: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1538: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1538: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1617: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1626: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:1626: Warning: '_' occurring outside math mode ./Tutorial/chapter_contributing.tex:38: Warning: '_' occurring outside math mode Fixpoint reached in 2 step(s) hevea -exec ./version.sh -exec xxdate.exe -fix -text Tutorial.tex Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial.htoc:378: Warning: Application of '\"' on 'i' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: 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'CODE' [] ./Tutorial/chapter_seq_annot.tex:651: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:656: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:668: Warning: line too long ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:683: Warning: line too long ./Tutorial/chapter_seq_annot.tex:704: Warning: line too long 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./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:471: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:504: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:507: 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'CODE' [] ./Tutorial/chapter_align.tex:1807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1807: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1808: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1809: Warning: Undefined block in 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Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1815: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1818: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined 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./Tutorial/chapter_align.tex:2067: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2091: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2102: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2295: Warning: line too long ./Tutorial/chapter_align.tex:2311: Warning: line too long ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined 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Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2428: Warning: line too long ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3448: Warning: line too long ./Tutorial/chapter_align.tex:3450: Warning: line too long ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:1: Warning: line too long ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:29: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:35: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:45: Warning: line too long ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:65: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:68: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:69: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:71: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_uniprot.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:89: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:123: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:138: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:166: Warning: Undefined 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./Tutorial/chapter_uniprot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:286: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:318: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:340: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:343: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:349: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:365: Warning: 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./Tutorial/chapter_uniprot.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:409: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:420: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:446: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:466: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:474: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:497: Warning: '_' occurring outside math mode ./Tutorial/chapter_uniprot.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_uniprot.tex:497: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:1: Warning: line too long ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:25: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:86: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:113: 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./Tutorial/chapter_pdb.tex:118: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:122: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:125: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:201: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:202: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:288: Warning: Image in text ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:351: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:352: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:353: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:357: Warning: Undefined 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[] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:592: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:606: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:646: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:683: Warning: '_' occurring outside math mode ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:760: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:768: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_pdb.tex:770: Warning: Undefined block 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./Tutorial/chapter_cluster.tex:623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:625: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:632: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in 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./Tutorial/chapter_cluster.tex:711: Warning: line too long ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:714: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:716: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:749: Warning: overfull line in array : array too wide ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:749: Warning: line too long ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:755: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:758: Warning: Undefined 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in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:53: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:54: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_appendix.tex:98: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial.tex:126: Warning: line too long ./Tutorial.tex:137: Warning: Application of '\'' on 'e' failed ./Tutorial.tex:137: Warning: Application of '\'' on 'o' failed ./Tutorial.tex:141: Warning: Application of '\"' on 'u' failed ./Tutorial.tex:215: Warning: Application of '\"' on 'o' failed ./Tutorial.tex:215: Warning: Application of '\"' on 'u' failed HeVeA Warning: Label(s) may have changed. Rerun me to get cross-references right. Run, run, again... Exclude comment 'comment' ./Tutorial.tex:73: Warning: tt_mode is an empty style ./Tutorial.haux:561: Giving up command: \@hevea@cbrace ./Tutorial.tex:73: Giving up command: \input ./Tutorial.tex:73: Warning: Failure while reading .haux ./Tutorial.tex:100: Warning: Application of '\'' on 'n' failed ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:82: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:91: Warning: Undefined citation: 'cock2009' ./Tutorial/chapter_introduction.tex:95: Warning: Undefined citation: 'chapman2000' ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:96: Warning: Undefined citation: 'hamelryck2003a' ./Tutorial/chapter_introduction.tex:97: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_introduction.tex:232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:14: Warning: Undefined label: 'chapter:advanced' ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:19: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:21: 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mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:45: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:sequence-parsing' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:65: Warning: Undefined label: 'sec:align_clustal' ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:72: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:74: Warning: '_' occurring outside math mode ./Tutorial/chapter_quick_start.tex:79: Warning: Undefined 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./Tutorial/chapter_quick_start.tex:145: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:145: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:150: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_quick_start.tex:158: Warning: Undefined label: 'chapter:entrez' ./Tutorial/chapter_quick_start.tex:159: Warning: Undefined label: 'chapter:uniprot' ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:160: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_quick_start.tex:169: Warning: Undefined label: 'chapter:cookbook' ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:1: Warning: line too long ./Tutorial/chapter_seq_objects.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:5: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:7: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:9: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:44: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:741: Warning: Undefined label: 'sec:seq-to-string' ./Tutorial/chapter_seq_objects.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:747: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:748: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_objects.tex:764: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:2: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:4: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined label: 'chapter:seq_objects' ./Tutorial/chapter_seq_annot.tex:20: Warning: Undefined 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./Tutorial/chapter_seq_annot.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:47: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:48: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:52: Warning: Undefined block 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./Tutorial/chapter_seq_annot.tex:112: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:113: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:120: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined label: 'chapter:quick_start' ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:130: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:131: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:132: Warning: 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./Tutorial/chapter_seq_annot.tex:197: Warning: '_' occurring outside math mode ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:211: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_seq_annot.tex:218: Warning: line too long ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:227: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:258: Warning: Undefined block in text mode: 'CODE' 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./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:298: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:301: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:304: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:313: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seq_annot.tex:320: 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./Tutorial/chapter_seqio.tex:149: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:150: Warning: Undefined label: 'chapter:seq_annot' ./Tutorial/chapter_seqio.tex:150: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:180: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:198: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:248: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:257: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:290: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_seqio.tex:398: Warning: Undefined label: 'sec:SeqIO-index-bgzf' ./Tutorial/chapter_seqio.tex:401: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:404: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:413: Warning: '_' occurring outside math mode ./Tutorial/chapter_seqio.tex:414: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:421: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:448: 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'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:540: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:550: Warning: line too long ./Tutorial/chapter_seqio.tex:560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:560: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:564: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:564: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:565: Warning: Undefined label: 'sec:seqio_todict' ./Tutorial/chapter_seqio.tex:566: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_seqio.tex:566: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_align.tex:917: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:917: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_align.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:921: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:933: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:944: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:947: Warning: Undefined label: 'sec:emboss-needle-water' ./Tutorial/chapter_align.tex:955: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1016: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1022: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1023: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1024: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1048: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1050: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1069: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1069: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1093: Warning: Undefined label: 'chapter:phylo' ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1098: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1127: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1150: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1161: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1204: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1317: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_align.tex:1377: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1377: Warning: Undefined block in 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./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1609: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1612: Warning: Undefined label: 'sec:pairwise-affine-gapscores' ./Tutorial/chapter_align.tex:1613: Warning: Undefined label: 'sec:pairwise-general-gapscores' ./Tutorial/chapter_align.tex:1613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1613: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1623: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1636: Warning: Undefined 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'CODE' [] ./Tutorial/chapter_align.tex:1710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1710: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1722: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1729: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1730: Warning: Undefined block in 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'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1810: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1811: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1812: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1813: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1814: Warning: Undefined 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Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1816: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1818: Warning: overfull line in array : array too wide ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1818: Warning: line too long ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1863: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1908: Warning: Undefined label: 'sec:pairwise-examples' ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1910: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1912: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1946: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:1984: Warning: Undefined 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./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2164: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2166: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2181: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2192: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2203: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2295: Warning: line too long ./Tutorial/chapter_align.tex:2311: Warning: line too long ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2366: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2379: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2392: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2408: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2411: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2412: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2418: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2424: Warning: Undefined citation: 'kent2002' ./Tutorial/chapter_align.tex:2428: Warning: line too long ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2431: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2433: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2434: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2435: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2437: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2479: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2485: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2493: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2496: Warning: Multiple definitions for label: sec:pairwise-general-gapscores ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2498: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2519: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2559: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2612: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2698: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2721: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2725: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:2725: Warning: Undefined label: 'sec:substitution_matrices' ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2758: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2773: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2864: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2932: Warning: '_' occurring outside math mode ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2934: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2938: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2951: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2958: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2975: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:2993: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3007: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3030: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3049: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3070: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3072: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3107: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3119: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3217: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3232: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3263: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined citation: 'altschul1990' ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3282: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3302: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3315: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3350: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'henikoff1992' ./Tutorial/chapter_align.tex:3354: Warning: Undefined citation: 'dayhoff1978' ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3354: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3379: Warning: Undefined citation: 'schneider2005' ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3391: Warning: Undefined label: 'sec:pairwise' ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3393: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3396: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3400: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3416: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3425: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3429: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3442: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3443: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3448: Warning: line too long ./Tutorial/chapter_align.tex:3450: Warning: line too long ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3468: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3491: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3508: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3511: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3528: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3529: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3565: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_align.tex:3572: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:1: Warning: line too long 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./Tutorial/chapter_blast.tex:73: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:74: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:109: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:121: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:132: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:133: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:135: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:138: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:146: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:147: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:157: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:159: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:160: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:169: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:178: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:202: Warning: '_' occurring outside math mode ./Tutorial/chapter_blast.tex:206: Warning: Undefined label: 'sec:alignment-tools' ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:225: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:236: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:238: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:240: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:241: Warning: Undefined label: 'sec:parsing-blast' ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:248: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:259: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:260: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:287: Warning: Undefined label: 'sec:running-www-blast' ./Tutorial/chapter_blast.tex:289: Warning: Undefined label: 'sec:running-local-blast' ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:303: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:304: Warning: Undefined label: 'sec:appendix-handles' ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:307: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:316: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:339: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_blast.tex:340: Warning: Undefined label: 'chapter:align' ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:341: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:342: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:344: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:348: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:369: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:388: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:440: Warning: line too long ./Tutorial/chapter_blast.tex:442: Warning: line too long ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:450: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:452: Warning: Undefined label: 'fig:blastrecord' ./Tutorial/chapter_blast.tex:456: Warning: Image in text ./Tutorial/chapter_blast.tex:468: Warning: Undefined label: 'fig:psiblastrecord' ./Tutorial/chapter_blast.tex:472: Warning: Image in text ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:488: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:489: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:494: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:501: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:502: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_blast.tex:507: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:1: Warning: line too long ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:17: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:18: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:21: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:27: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:29: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:31: Warning: '_' occurring outside math mode ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:32: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:40: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:41: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:42: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:44: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:46: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:47: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:72: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:77: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:78: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:79: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:80: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:81: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:82: 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text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:90: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_searchio.tex:97: Warning: 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./Tutorial/chapter_entrez.tex:1311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1311: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1311: Warning: Undefined label: 'chapter:seqio' ./Tutorial/chapter_entrez.tex:1335: Warning: Undefined label: 'sec:entrez-guidelines' ./Tutorial/chapter_entrez.tex:1336: Warning: Undefined label: 'sec:entrez-webenv' ./Tutorial/chapter_entrez.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1355: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_entrez.tex:1396: Warning: Undefined label: 'sec:entrez-search-fetch-genbank' ./Tutorial/chapter_entrez.tex:1397: Warning: Undefined block in 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citation: 'majumdar2005' ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:4: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_popgen.tex:19: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:9: Warning: Undefined citation: 'talevich2012' ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:34: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:70: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phylo.tex:96: Warning: Undefined label: 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text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:551: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:552: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:553: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:555: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:556: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:559: 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./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:584: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:587: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:588: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:589: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:594: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:596: Warning: 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./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:634: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:635: Warning: Undefined block in 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./Tutorial/chapter_cluster.tex:640: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:642: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:643: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:644: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:646: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:647: Warning: Undefined label: 'sec:distancefunctions' ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:650: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:652: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:654: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:655: 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./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined citation: 'golub1971' ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:668: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:670: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:675: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:677: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:678: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:679: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:680: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:681: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:683: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:686: Warning: 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'CODE' [] ./Tutorial/chapter_cluster.tex:761: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:762: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:764: Warning: Undefined 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./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:780: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:782: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:783: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cluster.tex:785: Warning: Undefined block in 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'eq:NOP' ./Tutorial/chapter_learning.tex:261: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:261: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:263: Warning: Undefined label: 'eq:OP' ./Tutorial/chapter_learning.tex:263: Warning: Undefined label: 'eq:NOP' ./Tutorial/chapter_learning.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:273: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:273: Warning: Undefined label: 'sec:LogisticRegression' ./Tutorial/chapter_learning.tex:277: Warning: Undefined label: 'table:training' ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_learning.tex:285: Warning: Undefined block in text mode: 'CODE' [] 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'CODE' [] ./Tutorial/chapter_graphics.tex:600: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:601: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:605: Warning: Undefined label: 'sec:efetch' ./Tutorial/chapter_graphics.tex:608: Warning: Undefined label: 'sec:SeqRecord-slicing' ./Tutorial/chapter_graphics.tex:610: Warning: Undefined label: 'sec:SeqRecord-reverse-complement' ./Tutorial/chapter_graphics.tex:728: Warning: Image in text ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:728: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:752: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:759: Warning: Undefined citation: 'proux2002' ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:841: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:843: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:873: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:874: Warning: Undefined block in text mode: 'CODE' [] 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./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1006: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1011: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1012: Warning: Undefined citation: 'jupe2012' ./Tutorial/chapter_graphics.tex:1035: Warning: line too long ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1036: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1057: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_graphics.tex:1110: Warning: Image in text ./Tutorial/chapter_graphics.tex:1110: Warning: '_' occurring outside math mode ./Tutorial/chapter_graphics.tex:1125: Warning: line too long ./Tutorial/chapter_graphics.tex:1190: Warning: Image in text ./Tutorial/chapter_graphics.tex:1190: Warning: '_' occurring outside math mode ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:1: Warning: line too long ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:10: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_kegg.tex:23: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:5: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_phenotype.tex:10: Warning: '_' occurring outside math mode ./Tutorial/chapter_phenotype.tex:16: Warning: '_' occurring 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./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:55: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:58: Warning: Undefined label: 'sec:low-level-fasta-fastq' ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:60: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:103: Warning: '_' occurring outside math mode ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in text mode: 'CODE' [] ./Tutorial/chapter_cookbook.tex:105: Warning: Undefined block in 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(./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seqio-todict-functionkey' on page 53 undefined on input line 804. (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [53]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 848--853 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-sort' on page 54 undefined on input line 86 6. Overfull \hbox (4.48064pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [54]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:seqio-index-getraw' on page 55 undefined on input line 948. 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(./_minted-Tutorial/4EBA0A67E686E73FAA1A0EB27C260028BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C06224D76A18C126B27DFE55444AA3FDBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:SeqIO-translate' on page 60 undefined on input li ne 1311. [60] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) LaTeX Warning: Reference `sec:SeqRecord-format' on page 61 undefined on input l ine 1331. (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [61] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `chapter:cookbook' on page 62 undefined on input line 1412. (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [62] (./Tutorial/chapter_align.tex Chapter 6. LaTeX Warning: Reference `sec:appendix-handles' on page 63 undefined on input l ine 31. 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LaTeX Warning: Float too large for page by 32.27644pt on input line 481. ) [128] [129 <./images/BlastRecord.png>] [130 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [131] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. 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Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [142]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [144] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. 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[203] [204] (./_minted-Tutorial/7A6D5A10ECC42BAFEE724455549BCB15BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D5B0F5228C1E7FAD0C7AB40AEFF6B6A9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2810A7579DC6FE011D31E2F074471A74BD02851C2FB632864165FCA4920 46548.pygtex [205]) (./_minted-Tutorial/D9D0B8746EBF14CF4BE7DA480D9ECD5DBD02851C2FB632864165FCA4920 46548.pygtex) [206] LaTeX Warning: Citation `hamelryck2003b' on page 207 undefined on input line 13 83. LaTeX Warning: Citation `majumdar2005' on page 207 undefined on input line 1384 . ) [207] (./Tutorial/chapter_popgen.tex Chapter 12. (./_minted-Tutorial/E5F1866C3CBB485B8C06B62764ACFBB29543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/331BEE386F268F55DE217F54E27EAB6B9543DFECA235A69AE23006BA05B 4EB70.pygtex) [208] (./_minted-Tutorial/6CD64A1F591B16F512F7EB6B68E5B3FC9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [209] (./Tutorial/chapter_phylo.tex Chapter 13. 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[216 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [217] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [218] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [219] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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LaTeX Warning: Citation `dehoon2004' on page 250 undefined on input line 6. LaTeX Warning: Citation `lecuyer1988' on page 250 undefined on input line 30. LaTeX Warning: Citation `kachitvichyanukul1988' on page 250 undefined on input line 30. [250] [251] [252] LaTeX Warning: Citation `snedecor1989' on page 253 undefined on input line 154. [253] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Reference `sec:distancefunctions' on page 254 undefined on input line 183. 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[270] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) LaTeX Warning: Citation `hihara2001' on page 271 undefined on input line 954. (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [271]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . [272] (./Tutorial/chapter_learning.tex Chapter 16. [273] LaTeX Warning: Reference `eq:OP' on page 274 undefined on input line 40. 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(./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex [298 <./images/three_track_simple.png>]) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex [299]) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. First the [][]\OT1/cmtt/m/n/10 GenomeDiagram []\OT1/cmr/m/n/10 ob-ject has a [][]\OT1/cm tt/m/n/10 cross_track_links Excluding 'htmlonly' comment. LaTeX Warning: Reference `fig:three_track_cl' on page 300 undefined on input li ne 894. LaTeX Warning: Reference `sec:gd_cross_links' on page 300 undefined on input li ne 901. LaTeX Warning: Reference `sec:gd_cross_links' on page 300 undefined on input li ne 901. Excluding 'htmlonly' comment. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [322]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . LaTeX Warning: Reference `sec:SeqRecord-slicing' on page 323 undefined on input line 480. 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(./_minted-Tutorial/FE4CF732C73126A3874795838D95FAB5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7420F7622CCC097E8ADA484A405A3C6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/07A24756D2FDD5E9B66DEB7412FC4D6E9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/7F04F15A8B73F26152ED44DB3C48528F669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/55430EAFE498E385842834603E0B8C869543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/47CA5358E0862EF3920CC2BF888DBDB89543DFECA235A69AE23006BA05B 4EB70.pygtex [58]) (./_minted-Tutorial/A50FCDC5880666D012F0A802072B4AC5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D27A33312B4E81447304AAB2BAF2F6DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/11D55B86CA819707A4B89E7FDA2E6E83669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/74E272C92C546FD61FA6D3DA5C178893BD02851C2FB632864165FCA4920 46548.pygtex) [59] (./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [60]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 848--853 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [61]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [62] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 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(./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [67] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [68] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [69] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [78]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [79]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [80]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [81] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [84] (./_minted-Tutorial/F88E003F9A4A95A929AA549FA710239CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [85] (./_minted-Tutorial/CD47D1913C82182C164BD47DA4715282BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E893BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C63064BD02851C2FB632864165FCA4920 46548.pygtex) [86] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A442BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B045BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E941CFC951CAE25312D9A5CAC9B27425BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1126--1130 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/EA6A02999040945446E72AC6A00E56D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/106ED62B0CFC10E7D5BC6CFC9CE003BDBD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/4D75AC9EDD74C466535F1EC4944833F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A261B9E9E2D4EB3C1DF5131C6F739998BD02851C2FB632864165FCA4920 46548.pygtex [89]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E7454BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E87BDA1F176DA567A757DBA0231BC5BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6BF1884F2D94AF8D067A2A20A9A41E2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5CBD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A240BD02851C2FB632864165FCA4920 46548.pygtex) [91] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/39152F199CEBB3375366F2E947824519BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/256B036DA9C3EDBC9EE41E2E52FDE1ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF385674BD02851C2FB632864165FCA4920 46548.pygtex [92]) (./_minted-Tutorial/CEE035FF629B69F7D6B6351C1DCE2493BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) [93] (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4B1939051DE630E53C7151447C8DD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [94]) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F8818526283868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) [95] (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex [96]) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Overfull \hbox (5.71313pt too wide) in paragraph at lines 45--46 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 481. ) [135] [136 <./images/BlastRecord.png>] [137 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [138] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [140]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [142] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [144]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [145] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [146] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [147]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [149]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [150]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [151] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [152] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [153] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [154] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [218] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 182--185 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [219 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[223 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [224] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [225] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [226] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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[257] [258] [259] [260] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [261]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [262] [263] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [264] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [265] [266] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C239049267861739BD02851C2FB632864165FCA4920 46548.pygtex) [267] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE22BD02851C2FB632864165FCA4920 46548.pygtex) [268] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D41BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF8895055BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEBBD02851C2FB632864165FCA4920 46548.pygtex [269]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [270] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C175BD02851C2FB632864165FCA4920 46548.pygtex) [271] Overfull \hbox (106.77225pt too wide) in paragraph at lines 654--656 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEABD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8D3928D79091BFFA7AFB6D6F35A52C7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4D59CC328F454A26A4BE9F91740D961CBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.39864pt too wide) in paragraph at lines 739--750 [] [273] [274] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FCBD02851C2FB632864165FCA4920 46548.pygtex) [275] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E0BD02851C2FB632864165FCA4920 46548.pygtex [276]) (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA8504BD02851C2FB632864165FCA4920 46548.pygtex) [277] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [278]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . 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[301 <./images/plasmid_linear_nice.png (PNG copy) >] [302 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA899543DFECA235A69AE23006BA05B 4EB70.pygtex [303]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A9543DFECA235A69AE23006BA05B 4EB70.pygtex [304]) Excluding 'htmlonly' comment. [305 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex [306]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [329]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [339 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [340 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [341 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B39543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/6655B5CD97C33186A22E6897501301FF9543DFECA235A69AE23006BA05B 4EB70.pygtex [342]) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [343 <./images/dot_plot_scatter.png >] (./_minted-Tutorial/601CCA4B782F1DA528DB81B0248031959543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/40ECF2E139F38209730D3B02B624EF74BD02851C2FB632864165FCA4920 46548.pygtex [349]) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex)) [350] (./Tutorial/chapter_testing.tex Chapter 21. 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(./_minted-Tutorial/415024C641C8DA7A09117B3DFE240C78BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/487DCC9F44A2539C9B32C0122AEF4065BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5098CD053449CEC3C9C30C90A007A364BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EEEF4ABAD66CE989F67C9E27EEDE95CCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F6AFF5A59B0706E4973BC1656FBD2D669543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/C4099CB0613585FCCD5EA7D8198704CEBD02851C2FB632864165FCA4920 46548.pygtex [60]) Overfull \hbox (9.93459pt too wide) in paragraph at lines 848--853 \OT1/cmr/m/n/10 FTP site ([][]$\OT1/cmtt/m/n/10 ftp : / / ftp . uniprot . org / pub / databases / uniprot / current _ release / knowledgebase / complete / (./_minted-Tutorial/D52DA4EEEEE2BF0FBE89EE253714929DBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (4.48064pt too wide) in paragraph at lines 891--894 []\OT1/cmr/m/n/10 As of Gen-Bank re-lease $210$, there are $38$ files mak-ing u p the vi-ral se-quences, \OT1/cmtt/m/n/10 gbvrl1.seq\OT1/cmr/m/n/10 , ..., \OT1 /cmtt/m/n/10 gbvrl38.seq\OT1/cmr/m/n/10 , (./_minted-Tutorial/D41A88D88AB398F0C3B719A5C7D017C144BBF456F55B5DC060035246D76 9EADB.pygtex [61]) (./_minted-Tutorial/B4D970E8C81930851D8639D77EC3E41044BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/7C4E0944FB13EC4E75DD6FC64900395ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C68CC3C9B3A505FB972706356D7F336FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61AD507889ED86CFCEFC880BAF2A2777BD02851C2FB632864165FCA4920 46548.pygtex) [62] (./_minted-Tutorial/DC5117490176932EFB8A7F0E0DA450F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/657D43328835FC01F9133F8BC964475D44BBF456F55B5DC060035246D76 9EADB.pygtex) (./_minted-Tutorial/82CBCD9B9F23373D67D9D0D7D2CA363FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/36F8D0FD2B4ADF57AC4203A0C80C6471BD02851C2FB632864165FCA4920 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(./_minted-Tutorial/E381FF526AC999B71717F178C997F6B2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F05AD4A17978E60C531612707D8F26ABD02851C2FB632864165FCA4920 46548.pygtex) [67] (./_minted-Tutorial/D19467E367634413AE9EE17A62E5D9EA9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/EDF3737891061C33EDE0FBFD16CCC63B9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/D1EAD55A1F8AD3DEAB82383A4F020F539543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (19.46596pt too wide) in paragraph at lines 1349--1351 \OT1/cmr/m/n/10 Making a sin-gle call to [][]\OT1/cmtt/m/n/10 SeqIO.write(...) []\OT1/cmr/m/n/10 is also much quicker than mul-ti-ple calls to the [][]\OT1/cm tt/m/n/10 SeqRecord.format(...) [68] (./_minted-Tutorial/2F337ECD1F936D416FF9C5C6F41A02D7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3337CD054623BAC21B6021E996EE0DFD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (21.32593pt too wide) in paragraph at lines 1393--1397 []\OT1/cmr/m/n/10 Likewise, when pars-ing FASTQ files, in-ter-nally [][]\OT1/cm tt/m/n/10 Bio.SeqIO.parse() []\OT1/cmr/m/n/10 calls the low-level [][]\OT1/cmtt /m/n/10 FastqGeneralIterator (./_minted-Tutorial/D3AF6542680CA390CDA8C8DF87C693D3BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D749A84299CF58E876E9A899069830DB9543DFECA235A69AE23006BA05B 4EB70.pygtex)) [69] (./Tutorial/chapter_align.tex Chapter 6. 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There-fore the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() Overfull \hbox (39.68698pt too wide) in paragraph at lines 442--447 [][]\OT1/cmtt/m/n/10 Bio.AlignIO.parse() []\OT1/cmr/m/n/10 and then save them u s-ing the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.write() []\OT1/cmr/m/n/10 -- or just use the [][]\OT1/cmtt/m/n/10 Bio.AlignIO.convert() (./_minted-Tutorial/9776F24C4F96F850E549BEF997E4D18CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D8256B42DA32121F3B83617DD03F4024BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DA108466F70572EEAE2D54AEA4C156A1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8FD10ACD641F4427B35E96F33B44479F669566ECC2CFEDC7429F829576A D0DC6.pygtex [78]) (./_minted-Tutorial/ACC9FF1F2F025F77815D96DC3115B7DFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/7E530BB128C8AE6BCF7BCE91DD4AF189669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/C17F8CD5F33DB6EB328532E02ADD1FE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C02EB78C9555A4FEE4954D77162ACF99669566ECC2CFEDC7429F829576A D0DC6.pygtex [79]) (./_minted-Tutorial/74D8F602592BD3646F12A04951B2C44CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CB14E2060AF38515C129AB5808537F169543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/E78F5A80C222A5B2777910FED4F43F56669566ECC2CFEDC7429F829576A D0DC6.pygtex [80]) (./_minted-Tutorial/4D0AF4A40C449D27FF181EC477C63CE6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2590B11C695B984E246A0A91734F786CBD02851C2FB632864165FCA4920 46548.pygtex) [81] (./_minted-Tutorial/508710FC1759BFFED598544DEC99BC0DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/886094CE2C1CAC714387144709D5A47ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6DC12DBE1D4FD44E7395C66258B5EAC9BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CAC16111FAD8C2E739F6D7C04A986BF0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A4149E9BEF55B5853014A59A3CBBFBE5BD02851C2FB632864165FCA4920 46548.pygtex [82]) (./_minted-Tutorial/8327145320A3BCB412D977F6683B71A2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1E096B06E33D157FFE18E045579F838CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C7331D522D75BB7830A1364BC3B71692BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C45FE25766D82D1C4A245CBB9A77DB00BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C0937EED558D842CEA8E3DB9514C6E59BD02851C2FB632864165FCA4920 46548.pygtex [83]) (./_minted-Tutorial/8EC03E9C8500D05C6439AC85123A9253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/AE857C14E4731CC6F6EBA53051460097BD02851C2FB632864165FCA4920 46548.pygtex) [84] (./_minted-Tutorial/F88E003F9A4A95A929AA549FA710239CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/523928538FA511A925EC995B1803BD16BD02851C2FB632864165FCA4920 46548.pygtex) [85] (./_minted-Tutorial/CD47D1913C82182C164BD47DA4715282BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA94166BAA5F4CBB44EF4336F3E893BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B49F47BF4F2EB4093BDE51E631C63064BD02851C2FB632864165FCA4920 46548.pygtex) [86] (./_minted-Tutorial/230B4706E315BD2F2A44F2EBCB37A442BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C11A66992B6C74B61F5A0BE7757AF3BCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/EAE190D91CC491562308EE568F986368BD02851C2FB632864165FCA4920 46548.pygtex [87]) (./_minted-Tutorial/6256254C5A7DFD21185291C77133BFDFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FC96AF22EDD72BC4AC2EE47EBAA6B045BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E941CFC951CAE25312D9A5CAC9B27425BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (8.40039pt too wide) in paragraph at lines 1126--1130 []\OT1/cmr/m/n/10 By de-fault MUS-CLE will out-put the align-ment as a FASTA fi le (us-ing gapped se-quences). The [][]\OT1/cmtt/m/n/10 Bio.AlignIO (./_minted-Tutorial/EA6A02999040945446E72AC6A00E56D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/106ED62B0CFC10E7D5BC6CFC9CE003BDBD02851C2FB632864165FCA4920 46548.pygtex [88]) (./_minted-Tutorial/4D75AC9EDD74C466535F1EC4944833F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/14F1F3BAF80772F5999B0773C02432E7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A261B9E9E2D4EB3C1DF5131C6F739998BD02851C2FB632864165FCA4920 46548.pygtex [89]) (./_minted-Tutorial/E2B86D066966C8BA13EEEF614D3E7454BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E87BDA1F176DA567A757DBA0231BC5BABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6BF1884F2D94AF8D067A2A20A9A41E2CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F551ABCEBB0043257A807C76B9D81B5CBD02851C2FB632864165FCA4920 46548.pygtex [90]) (./_minted-Tutorial/37B6E52C66902FA821D4B0E80172CE74BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0BA045AD7DFE0F0F3DD972F3E2C40BA1BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/482576AF06E80D82290535FF7857A240BD02851C2FB632864165FCA4920 46548.pygtex) [91] (./_minted-Tutorial/5D3CCD84BC2EC46BF5FD98E7A3FC7266669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/D9565472E525C9F2B734FC37A70D258E669566ECC2CFEDC7429F829576A D0DC6.pygtex) (./_minted-Tutorial/39152F199CEBB3375366F2E947824519BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/256B036DA9C3EDBC9EE41E2E52FDE1ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DC6CF8B5CDDD2C32E2052C03AF385674BD02851C2FB632864165FCA4920 46548.pygtex [92]) (./_minted-Tutorial/CEE035FF629B69F7D6B6351C1DCE2493BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DF151703751D72BD556402B910190A87BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/004029547AAB1172AF2684D2CA89EA88BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/554024580088332FAF0EA9296BACE82EBD02851C2FB632864165FCA4920 46548.pygtex) [93] (./_minted-Tutorial/419ECEB266819C8DCC38EB3E1DC3E361BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/143B9D317680E51D3A6E5641208720CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6CCC707502EDD92E9C355854215BF885BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/0A4B1939051DE630E53C7151447C8DD4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B6197C314840AD3EC15C56F366120C5BD02851C2FB632864165FCA4920 46548.pygtex [94]) (./_minted-Tutorial/E5E00F47BD7A0C8BC5F8818526283868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/52B42D5819C8EC5D57A21AE60D28F6CEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5F566D907B2F88621EC4175F1F17AE04BD02851C2FB632864165FCA4920 46548.pygtex) [95] (./_minted-Tutorial/0FE96E337A3BA73D52896D46E2E233DCBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/434D41043E1630324FA64E8B55B90BD5BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/48453D528762FF183499778647AF218BBD02851C2FB632864165FCA4920 46548.pygtex [96]) (./_minted-Tutorial/BD86EE3248811DE8FD9DE8ED02397A39BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (76.42714pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 By de-fault, [][]\OT1/cmtt/m/n/10 aligner.substitution_matrix []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . The at-tribu tes [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 and [][]\OT1/cmt t/m/n/10 aligner.mismatch_score Overfull \hbox (47.73264pt too wide) in paragraph at lines 1707--1711 []\OT1/cmr/m/n/10 are ig-nored if [][]\OT1/cmtt/m/n/10 aligner.substitution_mat rix []\OT1/cmr/m/n/10 is not [][]\OT1/cmtt/m/n/10 None[]\OT1/cmr/m/n/10 . Set-t ing [][]\OT1/cmtt/m/n/10 aligner.match_score []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 aligner.mismatch_score LaTeX Warning: `h' float specifier changed to `ht'. 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Overfull \hbox (5.71313pt too wide) in paragraph at lines 45--46 []\OT1/cmr/m/n/10 NCBI guide-lines, from [][]$\OT1/cmtt/m/n/10 https : / / blas t . ncbi . nlm . nih . gov / Blast . cgi ? 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Excluding 'htmlonly' comment. LaTeX Warning: Float too large for page by 32.27644pt on input line 481. ) [135] [136 <./images/BlastRecord.png>] [137 <./images/PSIBlastRecord.png>] (./Tutorial/chapter_searchio.tex Chapter 8. (./_minted-Tutorial/6D0EADF658E662CBA394834EFAC7346E669566ECC2CFEDC7429F829576A D0DC6.pygtex) [138] Overfull \hbox (2.9019pt too wide) in paragraph at lines 85--93 [][][]\OT1/cmtt/m/n/10 HSPFragment[]\OT1/cmr/m/n/10 , to rep-re-sent a sin-gle con-tigu-ous align-ment be-tween query and hit se-quences. [][]\OT1/cmtt/m/n/10 HSPFragment Overfull \hbox (8.43927pt too wide) in paragraph at lines 105--107 [][][]\OT1/cmtt/m/n/10 parse []\OT1/cmr/m/n/10 is used for search out-put files with mul-ti-ple queries and re-turns a gen-er-a-tor that yields [][]\OT1/cmtt/ m/n/10 QueryResult (./_minted-Tutorial/0EF47CD31A1F702FF10BD5C95E6D18FCBD02851C2FB632864165FCA4920 46548.pygtex [139]) (./_minted-Tutorial/BCDD1F95C8585B3C70DE9C1280B51955BD02851C2FB632864165FCA4920 46548.pygtex [140]) (./_minted-Tutorial/7A12FEF8445FE62A62C651C8B4EC163FBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/362861C831165FEA5413E0240053CD89BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/40227DD719AAD22E8DC2923BF43CE327BD02851C2FB632864165FCA4920 46548.pygtex [141]) (./_minted-Tutorial/FD9C81C098491598DBFB6208173BB575BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87D36F7AE3CBC4EDC6FCCFDE0173412CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/CA24D00985B075C56E7C71A246E439FFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE8A481953AA0F7BD7A99C0E281AD1A0BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7AA701BE1D007CE77D402E8CBFC777ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/906546E8B6F7831A0E7C5FC93AA56A03BD02851C2FB632864165FCA4920 46548.pygtex) [142] (./_minted-Tutorial/0B914838010D3E86EC368E1702EB7253BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E4688DCAB619DBEB784ED0D836D1E619BD02851C2FB632864165FCA4920 46548.pygtex [143]) (./_minted-Tutorial/DDECA9EB99D9FA38003A52C176593072BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/578CBF904F35965EECFEC1FA694F0752BD02851C2FB632864165FCA4920 46548.pygtex [144]) (./_minted-Tutorial/C0EB7D270F64704BA5AF848A21AACD64BD02851C2FB632864165FCA4920 46548.pygtex) [145] (./_minted-Tutorial/84848AABE250EF05E85067B2CD3275B8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A2EA3A12F7596A64ECEE374A9C53499ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/E7A6E47CCC64E8FADF02D1CDC6246863BD02851C2FB632864165FCA4920 46548.pygtex) [146] (./_minted-Tutorial/A3385B945E43CC076FFA693B27681F05BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DAAFD2AAF126ED8D7284764B561B5E2BBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4B4824DE2ED3215F02082987EE573577BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/61406D58E5F7C40FD0A0280DCAA66B46BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/BF77764978D907008BC936FD2A5FCD95BD02851C2FB632864165FCA4920 46548.pygtex [147]) (./_minted-Tutorial/CE618F26D70602D511E57E53CD880444BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DE23F71CD74CF7717D38AD01C1E1C787BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (27.24287pt too wide) in paragraph at lines 743--745 []\OT1/cmr/m/n/10 It should not sur-prise you now that the [][]\OT1/cmtt/m/n/10 HSP []\OT1/cmr/m/n/10 ob-ject has an [][]\OT1/cmtt/m/n/10 alignment []\OT1/cmr /m/n/10 prop-erty which is a [][]\OT1/cmtt/m/n/10 MultipleSeqAlignment (./_minted-Tutorial/338C616C7128C3DB7FFD516F5C2BDA12BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1195D6861E887568107FA7F463EA9BBABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/31F43A46088F6D2E63B39857A3536909BD02851C2FB632864165FCA4920 46548.pygtex [148]) (./_minted-Tutorial/16771935702D6A2A9762A80A621013D8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/046FE550C51B323D1E952A27E126FE19BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A55E467518B2E0F936A232F0970B1037BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/6D69D310788199FBA6E8A5BF5CAB2021BD02851C2FB632864165FCA4920 46548.pygtex [149]) (./_minted-Tutorial/2C71B4AE1F4F9990447491C6C291ABC2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FD7ECFDD9D017B829A54C995FEE42EEDBD02851C2FB632864165FCA4920 46548.pygtex [150]) (./_minted-Tutorial/3AD8335853E972C8E62AAF79CF0A3D33BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/758BAC7574A59544686354199D20892CBD02851C2FB632864165FCA4920 46548.pygtex) [151] (./_minted-Tutorial/7A63CB5E786CCE052981F7DD10653DA9BD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (14.20721pt too wide) in paragraph at lines 1055--1059 \OT1/cmr/m/n/10 func-tion re-turns a gen-er-a-tor ob-ject that yields a [][]\OT 1/cmtt/m/n/10 QueryResult []\OT1/cmr/m/n/10 ob-ject in each it-er-a-tion. Like [][]\OT1/cmtt/m/n/10 Bio.SearchIO.read[]\OT1/cmr/m/n/10 , (./_minted-Tutorial/DC4E434DA5B851CF1E22BD3608A311F4BD02851C2FB632864165FCA4920 46548.pygtex) [152] Overfull \hbox (20.13245pt too wide) in paragraph at lines 1087--1092 []\OT1/cmr/m/n/10 In this case, the ideal choice would be to in-dex the file us -ing [][]\OT1/cmtt/m/n/10 Bio.SearchIO.index []\OT1/cmr/m/n/10 or [][]\OT1/cmtt /m/n/10 Bio.SearchIO.index_db[]\OT1/cmr/m/n/10 . (./_minted-Tutorial/0AB25750C7D89E832295045C60D6B8C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/DFACFE04880AE0CA2E8E32ABDC9E9868BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/51F256FC56FFFAE1F1E84A4EFC5BAE55BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/5BCEFFE3DBB7A0AE4FD5D950731D72DEBD02851C2FB632864165FCA4920 46548.pygtex) [153] Overfull \hbox (11.82602pt too wide) in paragraph at lines 1167--1170 []\OT1/cmr/m/n/10 Finally, [][]\OT1/cmtt/m/n/10 Bio.SearchIO []\OT1/cmr/m/n/10 also pro-vides a [][]\OT1/cmtt/m/n/10 convert []\OT1/cmr/m/n/10 func-tion, whic h is sim-ply a short-cut for [][]\OT1/cmtt/m/n/10 Bio.SearchIO.parse (./_minted-Tutorial/BDE985FA3ADA6B0D37013C3D5F37C176BD02851C2FB632864165FCA4920 46548.pygtex)) [154] (./Tutorial/chapter_entrez.tex Chapter 9. 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(./_minted-Tutorial/6C5156DAD460519324A5B7657B301B5DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1836031BC83AA94C8906762F613E6CBABD02851C2FB632864165FCA4920 46548.pygtex) [218] (./_minted-Tutorial/D0A75FB8C1C791E4AA80420B93F216A8BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/FEC6C2CB5FA0AFCFE00D995BD3642FF2BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/2B435DC3041611A5D6A663B437ADB1ADBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.13162pt too wide) in paragraph at lines 182--185 []\OT1/cmr/m/n/10 Let's tar-get the most re-cent com-mon an-ces-tor (MRCA) of t he nodes named ``E'' and ``F''. The [][]\OT1/cmtt/m/n/10 common_ancestor (./_minted-Tutorial/29624A9666C9430AABADF395148BBF27BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D0F05D42BA0A9BC594EEDB16319A972DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/87517FEF82BFE1AB8D89A83F4DC5E8B9BD02851C2FB632864165FCA4920 46548.pygtex [219 <./images/phylo-simple-draw.png>]) Excluding 'htmlonly' comment. 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[223 <./images/phylo-draw-example.p ng>] Overfull \hbox (19.85507pt too wide) in paragraph at lines 479--486 \OT1/cmr/m/n/10 For ex-am-ple, in a tree with clade names Foo1, Foo2 and Foo3, [][]\OT1/cmtt/m/n/10 tree.find_clades({"name": "Foo1"}) [224] Overfull \hbox (13.48741pt too wide) in paragraph at lines 534--537 []\OT1/cmr/m/n/10 Find each clade con-tain-ing a match-ing el-e-ment. That is, find each el-e-ment as with [][]\OT1/cmtt/m/n/10 find_elements[]\OT1/cmr/m/n/10 , [225] (./_minted-Tutorial/6AAB725DBD2E5B7C5FD79A9A16536BF69543DFECA235A69AE23006BA05B 4EB70.pygtex) [226] Overfull \hbox (15.04868pt too wide) in paragraph at lines 703--707 []\OT1/cmr/m/n/10 Below is an ex-am-ple on how to use a python script to in-ter -act with PhyML ([][]$\OT1/cmtt/m/n/10 http : / / www . atgc-[]montpellier . 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[257] [258] [259] [260] (./_minted-Tutorial/C7B59059E3AE6CDE790EFE6EB0ED4140BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C2B72A7408C7DF74DFCEBE0485997287BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/425EDAA643B5AA9589F3EEE601735827BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/50B5971EFCF22FCC4E1302DB2D0A25009543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/293084E63EA5C0E01F325A4DD59469C0BD02851C2FB632864165FCA4920 46548.pygtex [261]) Overfull \hbox (78.60634pt too wide) in paragraph at lines 245--246 \OT1/cmr/m/n/10 men-sions of these ar-rays are $[]$ if [][]\OT1/cmtt/m/n/10 tra nspose []\OT1/cmr/m/n/10 is [][]\OT1/cmtt/m/n/10 0[]\OT1/cmr/m/n/10 , or $[]$ (./_minted-Tutorial/05DC01C08B8EDF71F86E3C3A9C28EB34BD02851C2FB632864165FCA4920 46548.pygtex) [262] [263] (./_minted-Tutorial/A4A28B5A443208DEAB3B4D76AA3B762EBD02851C2FB632864165FCA4920 46548.pygtex) [264] (./_minted-Tutorial/C286E2777B917B774560CBDC7CF92626BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [265] [266] Overfull \hbox (16.73593pt too wide) in paragraph at lines 423--424 [][]\OT1/cmtt/m/n/10 distance []\OT1/cmr/m/n/10 is the dis-tance be-tween them. The items be-ing clus-tered are num-bered from 0 to $[]$, (./_minted-Tutorial/015798D317E9D8732518AFD186C997CABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A27E6BF4EEB8E8B1C239049267861739BD02851C2FB632864165FCA4920 46548.pygtex) [267] (./_minted-Tutorial/81E4060E427D22B8F0C63B69EEC10A2ABD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/B8D2A546EC4941692F427A363193FBDEBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/A54EF6455421EFDFA1F63EB361CD74F6BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8975A4CCBC4C6138C302117E04F203ADBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/636486BB1CF700F6391685224211BE22BD02851C2FB632864165FCA4920 46548.pygtex) [268] (./_minted-Tutorial/6EFE1AC811BF16FF597EBE3E25BD2F72BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/F8E41E59FD44DADEB3740B0C0ED17D41BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/1B924FC8FA13A8B73C1C9E6EF8895055BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/77B32E49165B4345FFCA9FACF597BEEBBD02851C2FB632864165FCA4920 46548.pygtex [269]) (./_minted-Tutorial/D04E097D8E8C4C039FEC20FA103CED189543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/36EF8931044EF448BC70F722AFADB43D9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/805B33438269C932AC54C0DAB5A3D7AC9543DFECA235A69AE23006BA05B 4EB70.pygtex) [270] (./_minted-Tutorial/E542C07D0131DF56A89D92F80416C175BD02851C2FB632864165FCA4920 46548.pygtex) [271] Overfull \hbox (106.77225pt too wide) in paragraph at lines 654--656 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/7476A2D5F9D3A46EE00108837901FAEABD02851C2FB632864165FCA4920 46548.pygtex) [272] (./_minted-Tutorial/0420D397BA03971C0079F52E55FEABABBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/8D3928D79091BFFA7AFB6D6F35A52C7CBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/4D59CC328F454A26A4BE9F91740D961CBD02851C2FB632864165FCA4920 46548.pygtex) Overfull \hbox (25.39864pt too wide) in paragraph at lines 739--750 [] [273] [274] (./_minted-Tutorial/EFB8602799AD543446B386107A8147F7BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/43B30B527C3A2D8148F25CA143719CAFBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/C77F1ABB31C6A53C1626E0E0B34BB0FCBD02851C2FB632864165FCA4920 46548.pygtex) [275] (./_minted-Tutorial/1F3E2EFB988F2639C701A920B547241DBD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/3CAD921471DA4CA4441D02558CD1F2E0BD02851C2FB632864165FCA4920 46548.pygtex [276]) (./_minted-Tutorial/1A863BDE3A5754AA2C865F2A82DA8504BD02851C2FB632864165FCA4920 46548.pygtex) [277] Overfull \hbox (106.77225pt too wide) in paragraph at lines 929--931 \OT1/cmr/m/n/10 An ar-ray with di-men-sions $[]$ if rows are be-ing clus-tered, or $[]$ (./_minted-Tutorial/A39469F362670EDC6C7E8FD9FDF412C4BD02851C2FB632864165FCA4920 46548.pygtex) (./_minted-Tutorial/12B5F20EFF78F0E8FE505D45A9786D70BD02851C2FB632864165FCA4920 46548.pygtex [278]) (./_minted-Tutorial/E6C8D570402CFDDB43A6AE5A198BCF58BD02851C2FB632864165FCA4920 46548.pygtex)) Overfull \hbox (26.21434pt too wide) in paragraph at lines 986--116 []\OT1/cmr/m/n/10 This will cre-ate the files [][]\OT1/cmtt/m/n/10 cyano_result _K_G2_A2.cdt[]\OT1/cmr/m/n/10 , [][]\OT1/cmtt/m/n/10 cyano_result_K_G2.kgg[]\OT 1/cmr/m/n/10 , and [][]\OT1/cmtt/m/n/10 cyano_result_K_A2.kag[]\OT1/cmr/m/n/10 . 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[301 <./images/plasmid_linear_nice.png (PNG copy) >] [302 <./images/plasmid_circular_nice.png>] (./_minted-Tutorial/7CAF22FEDE98A6B9B7990010CA8709DC9543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/FA676816242752C9FE9F5EB12D4DAA899543DFECA235A69AE23006BA05B 4EB70.pygtex [303]) (./_minted-Tutorial/7926619D7609A591C404A01B2A99177A9543DFECA235A69AE23006BA05B 4EB70.pygtex [304]) Excluding 'htmlonly' comment. [305 <./images/three_track_si mple.png>] (./_minted-Tutorial/A2465D4E8908256A31684D5DDE7DA1119543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/347EB36A3001532221DDF6C29AA04AFB9543DFECA235A69AE23006BA05B 4EB70.pygtex [306]) (./_minted-Tutorial/F46F39DD7A8EC7B20CD42ACF6EFD18409543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/2CF2D2FC7E96B3F426F22452724A4C289543DFECA235A69AE23006BA05B 4EB70.pygtex) Overfull \hbox (2.65141pt too wide) in paragraph at lines 873--879 []\OT1/cmr/m/n/10 There are sev-eral im-por-tant pieces to this code. 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How-ever, for large FASTQ files it woul d be faster the low-level [][]\OT1/cmtt/m/n/10 FastqGeneralIterator (./_minted-Tutorial/AB16E58608A2F17CC79E6929557208879543DFECA235A69AE23006BA05B 4EB70.pygtex [329]) Overfull \hbox (4.57849pt too wide) in paragraph at lines 475--477 \OT1/cmr/m/n/10 That should find $13819$ reads from \OT1/cmtt/m/n/10 SRR014849. fastq \OT1/cmr/m/n/10 and save them to a new FASTQ file, \OT1/cmtt/m/n/10 with[ ]primer.fastq\OT1/cmr/m/n/10 . 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Overfull \hbox (4.00363pt too wide) in paragraph at lines 1117--1120 []\OT1/cmr/m/it/10 Tip: \OT1/cmr/m/n/10 Rather than us-ing [][]\OT1/cmtt/m/n/10 pylab.show() []\OT1/cmr/m/n/10 to show the plot in a win-dow, you can also use [][]\OT1/cmtt/m/n/10 pylab.savefig(...) (./_minted-Tutorial/798776F436EA559BACD9C305C09973919543DFECA235A69AE23006BA05B 4EB70.pygtex [339 <./images/hist_plot.png>]) (./_minted-Tutorial/CB78AD94DFE82ADBAF348C0EC1D261CD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. Excluding 'htmlonly' comment. [340 <./images/gc_plot.png>] (./_minted-Tutorial/6E0DA723E11A7B9CA8E2353A984B5DF79543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/80A47C8780CE3021D53829563E8166569543DFECA235A69AE23006BA05B 4EB70.pygtex [341 <./images/dot_plot.png>]) (./_minted-Tutorial/9574E55C4A182E2A0201DF18689F52F49543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. (./_minted-Tutorial/24C65C38DAD936B7AA15C7ED02EA36B39543DFECA235A69AE23006BA05B 4EB70.pygtex) (./_minted-Tutorial/6655B5CD97C33186A22E6897501301FF9543DFECA235A69AE23006BA05B 4EB70.pygtex [342]) (./_minted-Tutorial/7727E7020AA1BDC4C2A426B7590C20AD9543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. [343 <./images/dot_plot_scatter.png >] (./_minted-Tutorial/601CCA4B782F1DA528DB81B0248031959543DFECA235A69AE23006BA05B 4EB70.pygtex) Excluding 'htmlonly' comment. 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For ex-am-ple, [][]\OT1/cmtt/m/n/10 expec ted_frequencies[^^MD^^M, ^^ME^^M] (./_minted-Tutorial/40ECF2E139F38209730D3B02B624EF74BD02851C2FB632864165FCA4920 46548.pygtex [349]) (./_minted-Tutorial/8965C8E87A0A43ECCE216C12F7DE7A4FBD02851C2FB632864165FCA4920 46548.pygtex)) [350] (./Tutorial/chapter_testing.tex Chapter 21. 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Transcript written on Tutorial.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. 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The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165295 bytes). Transcript written on biopdb_faq.log. pdflatex biopdb_faq.tex This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./biopdb_faq.tex LaTeX2e <2022-11-01> patch level 1 L3 programming layer <2023-01-16> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2022/07/02 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/bookman.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pbk.fd)) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/latin1.def)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/latex/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty))) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) Package hyperref Warning: Option `hyperindex' has already been used, (hyperref) setting the option has no effect on input line 56. (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texlive/texmf-dist/tex/generic/babel/locale/en/babel-english.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./biopdb_faq.aux) *geometry* driver: auto-detecting *geometry* detected driver: pdftex *geometry* verbose mode - [ preamble ] result: * driver: pdftex * paper: a4paper * layout: * layoutoffset:(h,v)=(0.0pt,0.0pt) * modes: * h-part:(L,W,R)=(89.62709pt, 418.25368pt, 89.6271pt) * v-part:(T,H,B)=(56.9055pt, 731.23584pt, 56.9055pt) * \paperwidth=597.50787pt * \paperheight=845.04684pt * \textwidth=418.25368pt * \textheight=731.23584pt * \oddsidemargin=17.3571pt * \evensidemargin=17.3571pt * \topmargin=-52.36449pt * \headheight=12.0pt * \headsep=25.0pt * \topskip=10.0pt * \footskip=30.0pt * \marginparwidth=65.0pt * \marginparsep=11.0pt * \columnsep=10.0pt * \skip\footins=9.0pt plus 4.0pt minus 2.0pt * \hoffset=0.0pt * \voffset=0.0pt * \mag=1000 * \@twocolumnfalse * \@twosidefalse * \@mparswitchfalse * \@reversemarginfalse * (1in=72.27pt=25.4mm, 1cm=28.453pt) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (./biopdb_faq.out) (./biopdb_faq.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) Overfull \hbox (40.90678pt too wide) in paragraph at lines 112--119 []\T1/pbk/l/n/10 However, the [][]\T1/pcr/m/n/10 Bio.PDB.mmCIF.MMCIFlex []\T1/p bk/l/n/10 mod-ule (used in-ter-nally by [][]\T1/pcr/m/n/10 Bio.PDB.MMCIFParser [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pbk.fd) [2] Overfull \hbox (21.75009pt too wide) in paragraph at lines 271--276 \T1/pbk/l/n/10 file to their val-ues. If there are mul-ti-ple val-ues (like in the case of tag \T1/pcr/m/n/10 _atom_site.Cartn_y\T1/pbk/l/n/10 , [3] Overfull \hbox (13.9754pt too wide) in paragraph at lines 312--318 \T1/pbk/l/n/10 The avail-able keys are \T1/pcr/m/n/10 name, head, deposition_-d ate, release_-date, structure_- Overfull \hbox (11.71707pt too wide) in paragraph at lines 312--318 \T1/pcr/m/n/10 method, resolution, structure_-reference \T1/pbk/l/n/10 (maps to a list of ref-er-ences), \T1/pcr/m/n/10 journal_- [4] [5] [6] [7 <./images/smcra.png (PNG copy)>] [8] [9] [10] Overfull \hbox (45.08351pt too wide) in paragraph at lines 1012--1016 \T1/pbk/l/n/10 Note that in the above case only model 0 of the struc-ture is co n-sid-ered by \T1/pcr/m/n/10 PolypeptideBuilder\T1/pbk/l/n/10 . Overfull \hbox (10.80998pt too wide) in paragraph at lines 1020--1024 \T1/pbk/l/n/10 try). The se-quence of each polypep-tide can then eas-ily be ob- tained from the \T1/pcr/m/n/10 Polypeptide [11] [12] Overfull \hbox (87.74638pt too wide) in paragraph at lines 1148--1149 []\T1/pcr/m/n/10 # Calculate classical coordination number exp_fs=hse.calc_fs_e xposure(model) Overfull \hbox (20.6135pt too wide) in paragraph at lines 1169--1174 \T1/pcr/m/n/10 Atom \T1/pbk/l/n/10 ob-jects re-turn a \T1/pcr/m/n/10 Vector \T1 /pbk/l/n/10 ob-ject rep-re-sen-ta-tion of the co-or-di-nates with the \T1/pcr/m /n/10 get_vector [13] [14] Overfull \hbox (1.21811pt too wide) in paragraph at lines 1345--1353 []\T1/pbk/l/n/10 THE CON-TRIB-U-TORS AND COPY-RIGHT HOLD-ERS OF THIS SOFT-WARE DIS-CLAIM [15] (./biopdb_faq.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on biopdb_faq.pdf (15 pages, 165295 bytes). Transcript written on biopdb_faq.log. make[2]: Leaving directory '/build/python-biopython-1.80+dfsg/Doc' make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-biopython-1.80+dfsg' mkdir -p Tests_avoid for avoid in PAML_tools EmbossPhylipNew MSAProbs_tool NACCESS_tool PopGen_GenePop PopGen_GenePop_EasyController XXmotif_tool PDB_ResidueDepth mmtf mmtf_online raxml_tool BioSQL_MySQLdb BioSQL_psycopg2 \ ; do \ mv Tests/test_${avoid}.py Tests_avoid ; \ done mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory # For the doc package we need a clean testsuite without all the remaining files. So keep a clean copy here mkdir -p debian/tmp_tests cp -a Tests debian/tmp_tests # remove duplicated file rm -f debian/tmp_tests/Tests/Quality/example.fastq.gz # We also keep the tests we need to avoid for later inspection cp -a Tests_avoid debian/tmp_tests # in the Debian package dialign it is not needed to set DIALIGN2_DIR but the test is verifying this dir # to run the EMBOSS test test_Emboss also requires to have the environment variable EMBOSS_ROOT set LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \ --test-args='set -e; \ mkdir -p {build_dir}/home; \ mkdir -p {build_dir}/Doc/examples; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Doc/Tutorial {build_dir}/Doc; \ cp -a Doc/examples {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline' pybuild --test -i python{version} -p 3.11 --test --system=custom "--test-args=set -e; \\\ mkdir -p {build_dir}/home; \\\ mkdir -p {build_dir}/Doc/examples; \\\ cp -a Doc/Tutorial.tex {build_dir}/Doc; \\\ cp -a Doc/Tutorial {build_dir}/Doc; \\\ cp -a Doc/examples {build_dir}/Doc; \\\ cp -a Tests {build_dir}; \\\ cd {build_dir}/Tests; \\\ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME={build_dir}/home {interpreter} run_tests.py --offline" I: pybuild base:240: set -e; \ mkdir -p /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/home; \ mkdir -p /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples; \ cp -a Doc/Tutorial.tex /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/Tutorial /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc; \ cp -a Doc/examples /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc; \ cp -a Tests /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build; \ cd /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/home python3.11 run_tests.py --offline test_Ace ... ok test_Affy ... ok test_AlignIO ... ok test_AlignIO_ClustalIO ... ok test_AlignIO_EmbossIO ... ok test_AlignIO_FastaIO ... ok test_AlignIO_MauveIO ... ok test_AlignIO_PhylipIO ... ok test_AlignIO_convert ... ok test_AlignInfo ... ok test_Align_Alignment ... ok test_Align_a2m ... ok test_Align_bed ... ok test_Align_bigbed ... ok test_Align_bigmaf ... ok test_Align_bigpsl ... ok test_Align_clustal ... ok test_Align_emboss ... ok test_Align_exonerate ... ok test_Align_fasta ... ok test_Align_hhr ... ok test_Align_maf ... ok test_Align_mauve ... ok test_Align_msf ... ok test_Align_nexus ... ok test_Align_phylip ... ok test_Align_psl ... ok test_Align_sam ... ok test_Align_stockholm ... ok test_Align_tabular ... ok test_Application ... ok test_BWA_tool ... ok test_BioSQL_MySQLdb_online ... skipping. internet not available test_BioSQL_mysql_connector ... skipping. BioSQL test configuration file biosql.ini missing (see biosql.ini.sample) test_BioSQL_mysql_connector_online ... skipping. internet not available test_BioSQL_psycopg2_online ... skipping. internet not available test_BioSQL_sqlite3 ... ok test_BioSQL_sqlite3_online ... skipping. internet not available test_Blast_Record ... ok test_CAPS ... ok test_Chi2 ... ok test_ClustalOmega_tool ... ok test_Clustalw_tool ... ok test_Cluster ... ok test_CodonTable ... ok test_ColorSpiral ... ok test_Compass ... ok test_Consensus ... ok test_Dialign_tool ... ok test_EMBL_unittest ... ok test_Emboss ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_EmbossPrimer ... ok test_Entrez ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/__init__.py:686: UserWarning: Email address is not specified. To make use of NCBI's E-utilities, NCBI requires you to specify your email address with each request. As an example, if your email address is A.N.Other@example.com, you can specify it as follows: from Bio import Entrez Entrez.email = 'A.N.Other@example.com' In case of excessive usage of the E-utilities, NCBI will attempt to contact a user at the email address provided before blocking access to the E-utilities. warnings.warn( ok test_Entrez_online ... skipping. internet not available test_Entrez_parser ... ok test_Enzyme ... ok test_ExPASy ... skipping. internet not available test_Fasttree_tool ... ok test_File ... ok test_GenBank ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_GenomeDiagram ... Warn: Can't find .pfb for face 'Times-Roman' ok test_GraphicsBitmaps ... skipping. Check the fonts needed by ReportLab if you want bitmaps from Bio.Graphics Error in setFont('Times-Roman',10) missing the T1 files? Originally : makeT1Font() argument 2 must be str, not None test_GraphicsChromosome ... ok test_GraphicsDistribution ... ok test_GraphicsGeneral ... ok test_HMMCasino ... ok test_HMMGeneral ... ok test_KEGG ... ok test_KEGG_online ... skipping. internet not available test_KGML_graphics ... ok test_KGML_graphics_online ... skipping. internet not available test_KGML_nographics ... ok test_KeyWList ... ok test_LogisticRegression ... ok test_MafIO_index ... ok test_Mafft_tool ... ok test_MarkovModel ... ok test_Medline ... ok test_Muscle_tool ... skipping. Install MUSCLE if you want to use the Bio.Align.Applications wrapper. test_NCBITextParser ... ok test_NCBIXML ... ok test_NCBI_BLAST_tools ... ok test_NCBI_qblast ... ok test_NMR ... ok test_NaiveBayes ... ok test_Nexus ... ok test_PAML_baseml ... ok test_PAML_codeml ... ok test_PAML_yn00 ... ok test_PDBList ... skipping. internet not available test_PDB_CEAligner ... ok test_PDB_DSSP ... ok test_PDB_Dice ... ok test_PDB_Disordered ... ok test_PDB_Exposure ... ok test_PDB_FragmentMapper ... ok test_PDB_KDTree ... ok test_PDB_MMCIF2Dict ... ok test_PDB_MMCIFIO ... ok test_PDB_MMCIFParser ... ok test_PDB_NACCESS ... ok test_PDB_PDBIO ... ok test_PDB_PDBParser ... ok test_PDB_PSEA ... skipping. Download and install psea from ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/. Make sure that psea is on path test_PDB_Polypeptide ... ok test_PDB_QCSuperimposer ... ok test_PDB_SASA ... ok test_PDB_SMCRA ... ok test_PDB_Selection ... ok test_PDB_StructureAlignment ... ok test_PDB_Superimposer ... ok test_PDB_internal_coords ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py:144: BiopythonDeprecationWarning: 'three_to_one' will be deprecated in a future release of Biopython in favor of 'Bio.PDB.Polypeptide.protein_letters_3to1'. warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py:144: BiopythonDeprecationWarning: 'three_to_one' will be deprecated in a future release of Biopython in favor of 'Bio.PDB.Polypeptide.protein_letters_3to1'. warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py:161: BiopythonDeprecationWarning: 'one_to_three' will be deprecated in a future release of Biopython in favor of 'Bio.PDB.Polypeptide.protein_letters_1to3'. warnings.warn( ok test_PDB_parse_pdb_header ... ok test_PDB_vectors ... ok test_PQR ... ok test_Pathway ... ok test_Phd ... ok test_Phylo ... ok test_PhyloXML ... ok test_Phylo_CDAO ... ok test_Phylo_NeXML ... ok test_Phylo_matplotlib ... ok test_Phylo_networkx ... ok test_PopGen_GenePop_nodepend ... ok test_Prank_tool ... ok test_Probcons_tool ... ok test_ProtParam ... ok test_RCSBFormats ... ok test_Restriction ... ok test_SCOP_Astral ... ok test_SCOP_Cla ... ok test_SCOP_Des ... ok test_SCOP_Dom ... ok test_SCOP_Hie ... ok test_SCOP_Raf ... ok test_SCOP_Residues ... ok test_SCOP_Scop ... ok test_SCOP_online ... skipping. internet not available test_SVDSuperimposer ... ok test_SearchIO_blast_tab ... ok test_SearchIO_blast_tab_index ... ok test_SearchIO_blast_text ... ok test_SearchIO_blast_xml ... ok test_SearchIO_blast_xml_index ... ok test_SearchIO_blat_psl ... ok test_SearchIO_blat_psl_index ... ok test_SearchIO_exonerate ... ok test_SearchIO_exonerate_text_index ... ok test_SearchIO_exonerate_vulgar_index ... ok test_SearchIO_fasta_m10 ... ok test_SearchIO_fasta_m10_index ... ok test_SearchIO_hhsuite2_text ... ok test_SearchIO_hmmer2_text ... ok test_SearchIO_hmmer2_text_index ... ok test_SearchIO_hmmer3_domtab ... ok test_SearchIO_hmmer3_domtab_index ... ok test_SearchIO_hmmer3_tab ... ok test_SearchIO_hmmer3_tab_index ... ok test_SearchIO_hmmer3_text ... ok test_SearchIO_hmmer3_text_index ... ok test_SearchIO_interproscan_xml ... ok test_SearchIO_legacy ... ok test_SearchIO_model ... ok test_SearchIO_write ... ok test_SeqFeature ... ok test_SeqIO ... ok test_SeqIO_AbiIO ... ok test_SeqIO_FastaIO ... ok test_SeqIO_Gck ... ok test_SeqIO_Insdc ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/Scanner.py:303: BiopythonParserWarning: Non-standard feature line wrapping (didn't break on comma)? warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) ok test_SeqIO_NibIO ... ok test_SeqIO_PdbIO ... ok test_SeqIO_QualityIO ... ok test_SeqIO_SeqXML ... ok test_SeqIO_SnapGene ... ok test_SeqIO_TwoBitIO ... ok test_SeqIO_Xdna ... ok test_SeqIO_features ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: unassigned DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: genomic DNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:1254: BiopythonWarning: Non-standard molecule type: mRNA warnings.warn(f"Non-standard molecule type: {mol_type}", BiopythonWarning) /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py:550: BiopythonWarning: Annotation 'swissprot: locus SCX3_BUTOC, accession P01485; class: standard. created: Jul 21, 1986. sequence updated: Jul 21, 1986. annotation updated: Oct 16, 2001. xrefs: gi: gi: 69530 xrefs (non-sequence databases): HSSP P01484, InterPro IPR003614, InterPro IPR002061, InterPro IPR001219, Pfam PF00537, PRINTS PR00284, ProDom PD000908, SMART SM00505' too long for 'DBSOURCE' line warnings.warn( ok test_SeqIO_index ... ok test_SeqIO_online ... skipping. internet not available test_SeqIO_write ... ok test_SeqRecord ... ok test_SeqUtils ... ok test_Seq_objs ... ok test_SffIO ... ok test_SwissProt ... ok test_TCoffee_tool ... ok test_TogoWS ... skipping. internet not available test_TreeConstruction ... ok test_Tutorial ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. warnings.warn( ok test_UniGene ... ok test_UniProt_GOA ... ok test_Uniprot ... ok test_Wise ... ok test_align ... ok test_align_substitution_matrices ... ok test_bgzf ... ok test_cellosaurus ... ok test_codonalign ... /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/codonalignment.py:113: BiopythonWarning: Please make sure the two CodonAlignment objects are sharing the same codon table. This is not checked by Biopython. warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Seq.py:3457: BiopythonWarning: This table contains 6 codon(s) which code(s) for both STOP and an amino acid (e.g. 'TAA' -> 'stop' or STOP). Such codons will be translated as amino acid. warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py:612: BiopythonWarning: start codon of pro1 (S 0) does not correspond to pro1 (TCA) warnings.warn( /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py:678: BiopythonWarning: start codon of pro2(S 0) does not correspond to pro2(TCA) warnings.warn( ok test_geo ... ok test_kNN ... ok test_motifs ... ok test_motifs_online ... skipping. internet not available test_pairwise2 ... ok test_pairwise2_no_C ... ok test_pairwise_aligner ... ok test_pairwise_alignment_map ... ok test_phenotype ... ok test_phenotype_fit ... ok test_phyml_tool ... skipping. Couldn't find the PhyML software. Install PhyML 3.0 or later if you want to use the Bio.Phylo.Applications wrapper. test_prodoc ... ok test_prosite ... ok test_samtools_tool ... ok test_seq ... ok test_translate ... ok Bio docstring test ... ok Bio.Affy docstring test ... ok Bio.Affy.CelFile docstring test ... ok Bio.Align docstring test ... ok Bio.Align.AlignInfo docstring test ... ok Bio.Align.Applications docstring test ... ok Bio.Align.Applications._ClustalOmega docstring test ... ok Bio.Align.Applications._Clustalw docstring test ... ok Bio.Align.Applications._Dialign docstring test ... ok Bio.Align.Applications._MSAProbs docstring test ... ok Bio.Align.Applications._Mafft docstring test ... ok Bio.Align.Applications._Muscle docstring test ... ok Bio.Align.Applications._Prank docstring test ... ok Bio.Align.Applications._Probcons docstring test ... ok Bio.Align.Applications._TCoffee docstring test ... ok Bio.Align._aligners docstring test ... ok Bio.Align.a2m docstring test ... ok Bio.Align.bed docstring test ... ok Bio.Align.bigbed docstring test ... ok Bio.Align.bigmaf docstring test ... ok Bio.Align.bigpsl docstring test ... ok Bio.Align.clustal docstring test ... ok Bio.Align.emboss docstring test ... ok Bio.Align.exonerate docstring test ... ok Bio.Align.fasta docstring test ... ok Bio.Align.hhr docstring test ... ok Bio.Align.interfaces docstring test ... ok Bio.Align.maf docstring test ... ok Bio.Align.mauve docstring test ... ok Bio.Align.msf docstring test ... ok Bio.Align.nexus docstring test ... ok Bio.Align.phylip docstring test ... ok Bio.Align.psl docstring test ... ok Bio.Align.sam docstring test ... ok Bio.Align.stockholm docstring test ... ok Bio.Align.substitution_matrices docstring test ... ok Bio.Align.tabular docstring test ... ok Bio.AlignIO docstring test ... ok Bio.AlignIO.ClustalIO docstring test ... ok Bio.AlignIO.EmbossIO docstring test ... ok Bio.AlignIO.FastaIO docstring test ... ok Bio.AlignIO.Interfaces docstring test ... ok Bio.AlignIO.MafIO docstring test ... ok Bio.AlignIO.MauveIO docstring test ... ok Bio.AlignIO.MsfIO docstring test ... ok Bio.AlignIO.NexusIO docstring test ... ok Bio.AlignIO.PhylipIO docstring test ... ok Bio.AlignIO.StockholmIO docstring test ... ok Bio.Application docstring test ... ok Bio.Blast docstring test ... ok Bio.Blast.Applications docstring test ... ok Bio.Blast.NCBIWWW docstring test ... ok Bio.Blast.NCBIXML docstring test ... ok Bio.Blast.ParseBlastTable docstring test ... ok Bio.Blast.Record docstring test ... ok Bio.CAPS docstring test ... ok Bio.Cluster docstring test ... ok Bio.Cluster._cluster docstring test ... ok Bio.Compass docstring test ... ok Bio.Data docstring test ... ok Bio.Data.CodonTable docstring test ... ok Bio.Data.IUPACData docstring test ... ok Bio.Data.PDBData docstring test ... ok Bio.Data.SCOPData docstring test ... ok Bio.Emboss docstring test ... ok Bio.Emboss.Applications docstring test ... ok Bio.Emboss.Primer3 docstring test ... ok Bio.Emboss.PrimerSearch docstring test ... ok Bio.Entrez.Parser docstring test ... ok Bio.ExPASy.Enzyme docstring test ... ok Bio.ExPASy.Prodoc docstring test ... ok Bio.ExPASy.Prosite docstring test ... ok Bio.ExPASy.ScanProsite docstring test ... ok Bio.ExPASy.cellosaurus docstring test ... ok Bio.File docstring test ... ok Bio.GenBank docstring test ... ok Bio.GenBank.Record docstring test ... ok Bio.GenBank.Scanner docstring test ... ok Bio.GenBank.utils docstring test ... ok Bio.Geo docstring test ... ok Bio.Geo.Record docstring test ... ok Bio.Graphics docstring test ... ok Bio.Graphics.BasicChromosome docstring test ... ok Bio.Graphics.ColorSpiral docstring test ... ok Bio.Graphics.Comparative docstring test ... ok Bio.Graphics.DisplayRepresentation docstring test ... ok Bio.Graphics.Distribution docstring test ... ok Bio.Graphics.GenomeDiagram docstring test ... ok Bio.Graphics.GenomeDiagram._AbstractDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._CircularDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Colors docstring test ... ok Bio.Graphics.GenomeDiagram._CrossLink docstring test ... ok Bio.Graphics.GenomeDiagram._Diagram docstring test ... ok Bio.Graphics.GenomeDiagram._Feature docstring test ... ok Bio.Graphics.GenomeDiagram._FeatureSet docstring test ... ok Bio.Graphics.GenomeDiagram._Graph docstring test ... ok Bio.Graphics.GenomeDiagram._GraphSet docstring test ... ok Bio.Graphics.GenomeDiagram._LinearDrawer docstring test ... ok Bio.Graphics.GenomeDiagram._Track docstring test ... ok Bio.Graphics.KGML_vis docstring test ... ok Bio.HMM docstring test ... ok Bio.HMM.DynamicProgramming docstring test ... ok Bio.HMM.MarkovModel docstring test ... ok Bio.HMM.Trainer docstring test ... ok Bio.HMM.Utilities docstring test ... ok Bio.KEGG docstring test ... ok Bio.KEGG.Compound docstring test ... ok Bio.KEGG.Enzyme docstring test ... ok Bio.KEGG.Gene docstring test ... ok Bio.KEGG.KGML docstring test ... ok Bio.KEGG.KGML.KGML_parser docstring test ... ok Bio.KEGG.KGML.KGML_pathway docstring test ... ok Bio.KEGG.Map docstring test ... ok Bio.KEGG.REST docstring test ... ok Bio.LogisticRegression docstring test ... ok Bio.MarkovModel docstring test ... ok Bio.MaxEntropy docstring test ... ok Bio.Medline docstring test ... ok Bio.NMR docstring test ... ok Bio.NMR.NOEtools docstring test ... ok Bio.NMR.xpktools docstring test ... ok Bio.NaiveBayes docstring test ... ok Bio.Nexus docstring test ... ok Bio.Nexus.Nexus docstring test ... ok Bio.Nexus.Nodes docstring test ... ok Bio.Nexus.StandardData docstring test ... ok Bio.Nexus.Trees docstring test ... ok Bio.Nexus.cnexus docstring test ... ok Bio.PDB docstring test ... ok Bio.PDB.AbstractPropertyMap docstring test ... ok Bio.PDB.Atom docstring test ... ok Bio.PDB.Chain docstring test ... ok Bio.PDB.DSSP docstring test ... ok Bio.PDB.Dice docstring test ... ok Bio.PDB.Entity docstring test ... ok Bio.PDB.FragmentMapper docstring test ... ok Bio.PDB.HSExposure docstring test ... ok Bio.PDB.MMCIF2Dict docstring test ... ok Bio.PDB.MMCIFParser docstring test ... ok Bio.PDB.Model docstring test ... ok Bio.PDB.NACCESS docstring test ... ok Bio.PDB.NeighborSearch docstring test ... ok Bio.PDB.PDBExceptions docstring test ... ok Bio.PDB.PDBIO docstring test ... ok Bio.PDB.PDBList docstring test ... ok Bio.PDB.PDBParser docstring test ... ok Bio.PDB.PICIO docstring test ... ok Bio.PDB.PSEA docstring test ... ok Bio.PDB.Polypeptide docstring test ... ok Bio.PDB.QCPSuperimposer docstring test ... ok Bio.PDB.QCPSuperimposer.qcprotmodule docstring test ... ok Bio.PDB.Residue docstring test ... ok Bio.PDB.ResidueDepth docstring test ... ok Bio.PDB.SASA docstring test ... ok Bio.PDB.SCADIO docstring test ... ok Bio.PDB.Selection docstring test ... ok Bio.PDB.Structure docstring test ... ok Bio.PDB.StructureAlignment docstring test ... ok Bio.PDB.StructureBuilder docstring test ... ok Bio.PDB.Superimposer docstring test ... ok Bio.PDB.ccealign docstring test ... ok Bio.PDB.cealign docstring test ... ok Bio.PDB.ic_data docstring test ... ok Bio.PDB.ic_rebuild docstring test ... ok Bio.PDB.internal_coords docstring test ... ok Bio.PDB.kdtrees docstring test ... ok Bio.PDB.mmcifio docstring test ... ok Bio.PDB.mmtf docstring test ... ok Bio.PDB.mmtf.DefaultParser docstring test ... ok Bio.PDB.mmtf.mmtfio docstring test ... ok Bio.PDB.parse_pdb_header docstring test ... ok Bio.PDB.qcprot docstring test ... ok Bio.PDB.vectors docstring test ... ok Bio.Pathway docstring test ... ok Bio.Pathway.Rep docstring test ... ok Bio.Pathway.Rep.Graph docstring test ... ok Bio.Pathway.Rep.MultiGraph docstring test ... ok Bio.Phylo docstring test ... ok Bio.Phylo.Applications docstring test ... ok Bio.Phylo.Applications._Fasttree docstring test ... ok Bio.Phylo.Applications._Phyml docstring test ... ok Bio.Phylo.Applications._Raxml docstring test ... ok Bio.Phylo.BaseTree docstring test ... ok Bio.Phylo.CDAO docstring test ... ok Bio.Phylo.CDAOIO docstring test ... ok Bio.Phylo.Consensus docstring test ... ok Bio.Phylo.NeXML docstring test ... ok Bio.Phylo.NeXMLIO docstring test ... ok Bio.Phylo.Newick docstring test ... ok Bio.Phylo.NewickIO docstring test ... ok Bio.Phylo.NexusIO docstring test ... ok Bio.Phylo.PAML docstring test ... ok Bio.Phylo.PAML._paml docstring test ... ok Bio.Phylo.PAML._parse_baseml docstring test ... ok Bio.Phylo.PAML._parse_codeml docstring test ... ok Bio.Phylo.PAML._parse_yn00 docstring test ... ok Bio.Phylo.PAML.baseml docstring test ... ok Bio.Phylo.PAML.chi2 docstring test ... ok Bio.Phylo.PAML.codeml docstring test ... ok Bio.Phylo.PAML.yn00 docstring test ... ok Bio.Phylo.PhyloXML docstring test ... ok Bio.Phylo.PhyloXMLIO docstring test ... ok Bio.Phylo.TreeConstruction docstring test ... ok Bio.Phylo._cdao_owl docstring test ... ok Bio.Phylo._io docstring test ... ok Bio.Phylo._utils docstring test ... ok Bio.PopGen docstring test ... ok Bio.PopGen.GenePop docstring test ... ok Bio.PopGen.GenePop.Controller docstring test ... ok Bio.PopGen.GenePop.EasyController docstring test ... ok Bio.PopGen.GenePop.FileParser docstring test ... ok Bio.PopGen.GenePop.LargeFileParser docstring test ... ok Bio.Restriction docstring test ... ok Bio.Restriction.PrintFormat docstring test ... ok Bio.Restriction.Restriction docstring test ... ok Bio.Restriction.Restriction_Dictionary docstring test ... ok Bio.SCOP docstring test ... ok Bio.SCOP.Cla docstring test ... ok Bio.SCOP.Des docstring test ... ok Bio.SCOP.Dom docstring test ... ok Bio.SCOP.Hie docstring test ... ok Bio.SCOP.Raf docstring test ... ok Bio.SCOP.Residues docstring test ... ok Bio.SVDSuperimposer docstring test ... ok Bio.SearchIO docstring test ... ok Bio.SearchIO.BlastIO docstring test ... ok Bio.SearchIO.BlastIO.blast_tab docstring test ... ok Bio.SearchIO.BlastIO.blast_text docstring test ... ok Bio.SearchIO.BlastIO.blast_xml docstring test ... ok Bio.SearchIO.BlatIO docstring test ... ok Bio.SearchIO.ExonerateIO docstring test ... ok Bio.SearchIO.ExonerateIO._base docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_cigar docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_text docstring test ... ok Bio.SearchIO.ExonerateIO.exonerate_vulgar docstring test ... ok Bio.SearchIO.FastaIO docstring test ... ok Bio.SearchIO.HHsuiteIO docstring test ... ok Bio.SearchIO.HHsuiteIO.hhsuite2_text docstring test ... ok Bio.SearchIO.HmmerIO docstring test ... ok Bio.SearchIO.HmmerIO._base docstring test ... ok Bio.SearchIO.HmmerIO.hmmer2_text docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_domtab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_tab docstring test ... ok Bio.SearchIO.HmmerIO.hmmer3_text docstring test ... ok Bio.SearchIO.InterproscanIO docstring test ... ok Bio.SearchIO.InterproscanIO.interproscan_xml docstring test ... ok Bio.SearchIO._index docstring test ... ok Bio.SearchIO._legacy docstring test ... ok Bio.SearchIO._legacy.NCBIStandalone docstring test ... ok Bio.SearchIO._legacy.ParserSupport docstring test ... ok Bio.SearchIO._model docstring test ... ok Bio.SearchIO._model._base docstring test ... ok Bio.SearchIO._model.hit docstring test ... ok Bio.SearchIO._model.hsp docstring test ... ok Bio.SearchIO._model.query docstring test ... ok Bio.SearchIO._utils docstring test ... ok Bio.Seq docstring test ... ok Bio.SeqFeature docstring test ... ok Bio.SeqIO docstring test ... ok Bio.SeqIO.AbiIO docstring test ... ok Bio.SeqIO.AceIO docstring test ... ok Bio.SeqIO.FastaIO docstring test ... ok Bio.SeqIO.GckIO docstring test ... ok Bio.SeqIO.IgIO docstring test ... ok Bio.SeqIO.InsdcIO docstring test ... ok Bio.SeqIO.Interfaces docstring test ... ok Bio.SeqIO.NibIO docstring test ... ok Bio.SeqIO.PdbIO docstring test ... ok Bio.SeqIO.PhdIO docstring test ... ok Bio.SeqIO.PirIO docstring test ... ok Bio.SeqIO.QualityIO docstring test ... ok Bio.SeqIO.SeqXmlIO docstring test ... ok Bio.SeqIO.SffIO docstring test ... ok Bio.SeqIO.SnapGeneIO docstring test ... ok Bio.SeqIO.SwissIO docstring test ... ok Bio.SeqIO.TabIO docstring test ... ok Bio.SeqIO.TwoBitIO docstring test ... ok Bio.SeqIO.UniprotIO docstring test ... ok Bio.SeqIO.XdnaIO docstring test ... ok Bio.SeqIO._index docstring test ... ok Bio.SeqIO._twoBitIO docstring test ... ok Bio.SeqRecord docstring test ... ok Bio.SeqUtils docstring test ... ok Bio.SeqUtils.CheckSum docstring test ... ok Bio.SeqUtils.CodonUsage docstring test ... ok Bio.SeqUtils.CodonUsageIndices docstring test ... ok Bio.SeqUtils.IsoelectricPoint docstring test ... ok Bio.SeqUtils.MeltingTemp docstring test ... ok Bio.SeqUtils.ProtParam docstring test ... ok Bio.SeqUtils.ProtParamData docstring test ... ok Bio.SeqUtils.lcc docstring test ... ok Bio.Sequencing docstring test ... ok Bio.Sequencing.Ace docstring test ... ok Bio.Sequencing.Applications docstring test ... ok Bio.Sequencing.Applications._Novoalign docstring test ... ok Bio.Sequencing.Applications._bwa docstring test ... ok Bio.Sequencing.Applications._samtools docstring test ... ok Bio.Sequencing.Phd docstring test ... ok Bio.SwissProt docstring test ... ok Bio.SwissProt.KeyWList docstring test ... ok Bio.UniGene docstring test ... ok Bio.UniProt docstring test ... ok Bio.UniProt.GOA docstring test ... ok Bio.Wise docstring test ... ok Bio.Wise.dnal docstring test ... ok Bio.Wise.psw docstring test ... ok Bio._utils docstring test ... ok Bio.bgzf docstring test ... ok Bio.codonalign docstring test ... ok Bio.codonalign.codonalignment docstring test ... ok Bio.codonalign.codonseq docstring test ... ok Bio.cpairwise2 docstring test ... ok Bio.kNN docstring test ... ok Bio.motifs docstring test ... ok Bio.motifs._pwm docstring test ... ok Bio.motifs.alignace docstring test ... ok Bio.motifs.applications docstring test ... ok Bio.motifs.applications._xxmotif docstring test ... ok Bio.motifs.clusterbuster docstring test ... ok Bio.motifs.jaspar docstring test ... ok Bio.motifs.jaspar.db docstring test ... ok Bio.motifs.mast docstring test ... ok Bio.motifs.matrix docstring test ... ok Bio.motifs.meme docstring test ... ok Bio.motifs.minimal docstring test ... ok Bio.motifs.pfm docstring test ... ok Bio.motifs.thresholds docstring test ... ok Bio.motifs.transfac docstring test ... ok Bio.motifs.xms docstring test ... ok Bio.pairwise2 docstring test ... ok Bio.phenotype docstring test ... ok Bio.phenotype.phen_micro docstring test ... ok Bio.phenotype.pm_fitting docstring test ... ok BioSQL docstring test ... ok BioSQL.BioSeq docstring test ... ok BioSQL.BioSeqDatabase docstring test ... ok BioSQL.DBUtils docstring test ... ok BioSQL.Loader docstring test ... ok ---------------------------------------------------------------------- Ran 553 tests in 1121.684 seconds Skipping any tests requiring internet access Python version: 3.11.2 (main, Mar 13 2023, 12:18:29) [GCC 12.2.0] Operating system: posix linux rm -fr -- /tmp/dh-xdg-rundir-TRCEPX9a mv Tests_avoid/* Tests rmdir Tests_avoid make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-biopython.substvars debian/python-biopython-doc.substvars debian/python3-biopython-sql.substvars rm -fr -- debian/.debhelper/generated/python3-biopython/ debian/python3-biopython/ debian/tmp/ debian/.debhelper/generated/python-biopython-doc/ debian/python-biopython-doc/ debian/.debhelper/generated/python3-biopython-sql/ debian/python3-biopython-sql/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/python-biopython-1.80+dfsg' dh_auto_install install -m0755 -d /build/python-biopython-1.80\+dfsg/debian/tmp pybuild --install -i python{version} -p 3.11 --dest-dir /build/python-biopython-1.80\+dfsg/debian/tmp I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-biopython-1.80+dfsg/debian/tmp running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Align.substitution_matrices.data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Align.substitution_matrices.data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Align.substitution_matrices.data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.DTDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.DTDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.DTDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'Bio.Entrez.XSDs' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'Bio.Entrez.XSDs' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'Bio.Entrez.XSDs' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /build/python-biopython-1.80+dfsg/debian/tmp/usr creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/tree1.nwk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/DBUtils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeq.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/DBUtils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/Loader.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/__pycache__/BioSeqDatabase.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/BioSeq.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/BioSeqDatabase.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/BioSQL/Loader.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/other_trees.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/home/.cache/matplotlib/fontlist-v330.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.cache/matplotlib creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/matplotlib creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/XSDs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.config/biopython/Bio/Entrez/DTDs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/plugins/linux creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/mcoffee creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/methods creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/home/.t_coffee/cache creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_graphics.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_motifs.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_kegg.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phenotype.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_pdb.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_learning.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_annot.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_align.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_learning.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_introduction.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_contributing.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cluster.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_entrez.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_popgen.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seqio.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_phylo.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_testing.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_blast.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_appendix.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_uniprot.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_cookbook.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_seq_objects.aux -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_searchio.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial/chapter_quick_start.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/Tutorial copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/Tutorial.tex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/alpha.faa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/PF05371_seed.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/www_blast.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/swissprot.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/Proux_et_al_2002_Figure_6.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/clustal_run.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/fasta_iterator.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ec_5.4.2.2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/beta.faa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/nmr/noed.xpk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/nmr/simplepredict.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/Plates.csv -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bz2 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/fasta_dictionary.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/my_blat.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/m_cold.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/simple.dnd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/opuntia.dnd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/my_blast.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ACT_example.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Doc/examples/ls_orchid.gbk.gz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/MarkovModel.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/cpairwise2module.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Ace.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Phd.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_bwa.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_Novoalign.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_bwa.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_Novoalign.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/__pycache__/_samtools.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/Applications/_samtools.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Ace.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Sequencing/__pycache__/Phd.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/query.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hsp.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/_base.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/query.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hsp.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/hit.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/__pycache__/_base.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_model/hit.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/_base.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer2_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_domtab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/_base.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/__pycache__/hmmer3_tab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer2_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HmmerIO/hmmer3_tab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlatIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_xml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/blast_tab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_xml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/blast_tab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/BlastIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/_base.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_cigar.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/exonerate_vulgar.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/__pycache__/_base.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/ParserSupport.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/NCBIStandalone.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/ParserSupport.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/NCBIStandalone.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_legacy/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/hhsuite2_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/HHsuiteIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/FastaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/_utils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/__pycache__/BlatIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/interproscan_xml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/interproscan_xml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/InterproscanIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SearchIO/_utils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Scanner.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/Record.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/utils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/Scanner.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/utils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/GenBank/Record.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Seq.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/TogoWS/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/TogoWS/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction_Dictionary.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/PrintFormat.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction_Dictionary.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/PrintFormat.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/__pycache__/Restriction.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Restriction/Restriction.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/Applications.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/PrimerSearch.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/PrimerSearch.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Applications.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/__pycache__/Primer3.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Emboss/Primer3.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SVDSuperimposer/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqFeature.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/kNN.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/MultiGraph.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/MultiGraph.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/Graph.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Pathway/Rep/Graph.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/XSDs/IPGReportSet.xsd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/XSDs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/Parser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/Parser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_020114.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml-in-pubmed.mod -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat1.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/articlemeta.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/notat.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsb.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/list.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_all.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk4.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/format.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-modules1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-chars1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-display1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common-atts1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsn.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-mixes.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_090101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivearticle1-3-mathml3.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-math1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isodia.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/chars.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esummary-v1.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-XHTMLtablesetup1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-table-1.mod -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_011101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_140101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSpell.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-classes1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_110101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-models1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqres.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/para.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eInfo_020511.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_100101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_120101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_130101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/esearch.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-list1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-modules1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/display.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cdd.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_140101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_100301.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomopf.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-notat1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-journalmeta1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-embedded-index2.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_150101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-phrase1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pmc-1.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-articlemeta1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/taxon.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130501.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamso.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-modules.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/XHTMLtablesetup.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/journalmeta.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/SP_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivearticle.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsa.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmcommon_090101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/htmltable.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-mixes1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TSeq.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-xmlspecchars1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-related-object1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/einfo.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_110101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-backmatter1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/common.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_101123.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmserials_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/link.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medlars.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsc.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/math.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_130101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSearch_020511.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml2.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_150101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Systems.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isonum.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/bookdoc_120101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Project.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180601.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xhtml-inlstyle-1.mod -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/ePost_020511.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_TxInit.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isopub.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-classes.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/GenBank_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-link1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/xmlspecchars.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eLink_090910.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/eSummary_041029.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/section.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/elink_020122.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr1.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/BITS-question-answer2.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3-qname1.mod -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_100301.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isoamsr.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlalias.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isolat2.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Medline.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isobox.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/modules.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_180101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomscr.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-mixes.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/phrase.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/references.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-para1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk1.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_090101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/backmatter.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-archivecustom-modules1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-section1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-mixes1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Access.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathmlsetup.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/egquery.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/HomoloGene.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_RNA.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Pub.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/archivecustom-models.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/EMBL_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/OMSSA.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-format1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PRF_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-common1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isocyr2.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_190101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isotech.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isomfrk.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-ali-namespace1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/nlmmedline_011101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Remap.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-default-classes1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PDB_General.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NSE.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/pubmed_080101.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mathml3.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/mmlextra.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-nlmcitation1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-funding1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-references1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/PIR_General.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/isogrk2.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/JATS-mathml3-mathmlsetup1-3.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/default-classes.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Entrez/DTDs/NCBI_BioSource.dtd -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/DTDs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/db.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/db.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/jaspar/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/alignace.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/minimal.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/meme.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/transfac.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/matrix.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/xms.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/clusterbuster.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/mast.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/alignace.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/transfac.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/matrix.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/clusterbuster.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/mast.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/pfm.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/thresholds.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/minimal.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/xms.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/__pycache__/meme.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/pfm.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/thresholds.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications/_xxmotif.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/_xxmotif.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/motifs/applications/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/LogisticRegression.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/MarkovModel.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/DynamicProgramming.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/DynamicProgramming.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Utilities.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/Trainer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/__pycache__/MarkovModel.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/Trainer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/HMM/Utilities.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Application/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Application/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/InsdcIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/IgIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/TwoBitIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/AceIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/TabIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/XdnaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/PdbIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SeqXmlIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/FastaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SwissIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/InsdcIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SffIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/UniprotIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/SnapGeneIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AceIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PirIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TabIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PdbIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/Interfaces.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/IgIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/XdnaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/PhdIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/TwoBitIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/NibIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/QualityIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/AbiIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/__pycache__/GckIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/_twoBitIO.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/PhdIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/Interfaces.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/AbiIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/SwissIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/QualityIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/PirIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/GckIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/SnapGeneIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/UniprotIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/SffIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/SeqXmlIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqIO/NibIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.h -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/cluster.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Cluster/clustermodule.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/KeyWList.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SwissProt/KeyWList.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/phylip.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/msf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/sam.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/bed.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/bigpsl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/emboss.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/nexus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/_aligners.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/maf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Clustalw.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Prank.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Probcons.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_MSAProbs.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Mafft.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_ClustalOmega.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Dialign.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_Muscle.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/_TCoffee.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_ClustalOmega.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Dialign.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Muscle.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Mafft.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_TCoffee.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Prank.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Clustalw.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_Probcons.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/Applications/__pycache__/_MSAProbs.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/a2m.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM45 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RAO -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM62 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM80 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM70 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/HOXD70 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER6 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GONNET1992 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/RISLER -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/NUC.4.4 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/LEVIN -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MCLACHLAN -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTN -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM90 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLASTP -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/GENETIC -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BLOSUM50 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER22 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/BENNER74 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/DAYHOFF -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JONES -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/STR -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/JOHNSON -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MEGABLAST -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM250 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/PAM30 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/FENG -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/SCHNEIDER -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/MDM78 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/substitution_matrices/data/TRANS -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/hhr.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/AlignInfo.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/mauve.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/fasta.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/maf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigmaf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/interfaces.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/emboss.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/hhr.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/AlignInfo.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/sam.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigbed.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/tabular.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/clustal.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/phylip.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/msf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/exonerate.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/a2m.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bed.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/psl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/bigpsl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/stockholm.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/mauve.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/__pycache__/nexus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/fasta.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/bigbed.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/stockholm.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/clustal.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/interfaces.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/tabular.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/exonerate.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/bigmaf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Align/psl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/File.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Compass/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Compass/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/psw.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/dnal.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/__pycache__/psw.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Wise/dnal.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/PDBData.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/PDBData.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/SCOPData.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/CodonTable.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/IUPACData.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/IUPACData.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/SCOPData.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Data/CodonTable.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NaiveBayes.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prodoc.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/Enzyme.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/ScanProsite.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/Prosite.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/cellosaurus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prodoc.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Prosite.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/ScanProsite.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/Enzyme.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/ExPASy/__pycache__/cellosaurus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/phen_micro.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/phen_micro.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/pm_fitting.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/phenotype/pm_fitting.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt/__pycache__/GOA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniProt/GOA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/bgzf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Alphabet/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/CAPS/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/CAPS/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/pairwise2.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/codonalignment.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/codonseq.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonalignment.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/codonseq.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/codonalign/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/Applications.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/ParseBlastTable.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/NCBIWWW.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/ParseBlastTable.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Applications.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/Record.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIWWW.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/__pycache__/NCBIXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Blast/Record.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/Seq.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/NaiveBayes.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/kNN.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqFeature.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/bgzf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/pairwise2.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/LogisticRegression.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/_utils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/MaxEntropy.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/File.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/MarkovModel.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/__pycache__/SeqRecord.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/ClustalIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/MsfIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/FastaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/PhylipIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/MafIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/MauveIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/NexusIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MauveIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/FastaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/StockholmIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/PhylipIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/Interfaces.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/NexusIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/EmbossIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MsfIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/ClustalIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/__pycache__/MafIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/Interfaces.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/EmbossIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/AlignIO/StockholmIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/MaxEntropy.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Gene/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Compound/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_pathway.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/KGML_parser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_pathway.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/KGML/KGML_parser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Map/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/REST.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/Enzyme/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/KEGG/REST.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy/CelFile.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/CelFile.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Affy/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/DisplayRepresentation.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/Comparative.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/ColorSpiral.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/BasicChromosome.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/ColorSpiral.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/BasicChromosome.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Comparative.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/DisplayRepresentation.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/Distribution.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/__pycache__/KGML_vis.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Feature.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_FeatureSet.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Graph.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_AbstractDrawer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Colors.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Graph.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_FeatureSet.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_GraphSet.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Track.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Feature.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CircularDrawer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_LinearDrawer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_Diagram.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/__pycache__/_CrossLink.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Track.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_GraphSet.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_CrossLink.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Diagram.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/GenomeDiagram/_Colors.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/Distribution.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Graphics/KGML_vis.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/_utils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/parse_pdb_header.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/NACCESS.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/HSExposure.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/QCPSuperimposer/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PDBParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/SCADIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Polypeptide.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Superimposer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/internal_coords.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/StructureBuilder.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/NeighborSearch.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Structure.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PSEA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/vectors.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Atom.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/StructureAlignment.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/DSSP.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/FragmentMapper.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/qcprot.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Entity.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Model.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmcifio.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/mmtfio.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/DefaultParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/DefaultParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/mmtf/mmtfio.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PDBIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PDBExceptions.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/cealign.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Residue.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIFParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Entity.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/AbstractPropertyMap.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SASA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/qcprot.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Atom.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Model.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Superimposer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NACCESS.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_rebuild.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Structure.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PSEA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/DSSP.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/mmcifio.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Chain.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureBuilder.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBExceptions.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Dice.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/internal_coords.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/MMCIF2Dict.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/SCADIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PDBList.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/HSExposure.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/StructureAlignment.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/vectors.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ic_data.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/parse_pdb_header.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/PICIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/ResidueDepth.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Polypeptide.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/NeighborSearch.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/FragmentMapper.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/__pycache__/Selection.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/SASA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ResidueDepth.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Residue.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/cealign.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIF2Dict.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ic_rebuild.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/MMCIFParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Selection.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/AbstractPropertyMap.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Dice.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PDBList.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/PICIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/Chain.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ccealignmodule.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PDB/ic_data.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Dom.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Raf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Des.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Hie.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Cla.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Hie.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Dom.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Raf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Residues.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/__pycache__/Des.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Cla.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SCOP/Residues.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/NOEtools.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/NOEtools.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/xpktools.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/NMR/xpktools.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Consensus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAOIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/NewickIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/TreeConstruction.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Newick.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/CDAO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/_io.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/NexusIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/codeml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/chi2.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_yn00.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/yn00.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_codeml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/codeml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_yn00.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_baseml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_paml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/baseml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/yn00.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/_parse_codeml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/chi2.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_parse_baseml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/_paml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PAML/baseml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Fasttree.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Phyml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/_Raxml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Fasttree.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Raxml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/_Phyml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/Applications/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NeXMLIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/CDAOIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXMLIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/PhyloXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Consensus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_cdao_owl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/BaseTree.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_io.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NewickIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/NexusIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/Newick.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/TreeConstruction.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/__pycache__/_utils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/BaseTree.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXMLIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/_utils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/PhyloXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/NeXMLIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Phylo/_cdao_owl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/Controller.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/LargeFileParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/FileParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/Controller.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/EasyController.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/LargeFileParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/FileParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/GenePop/EasyController.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/PopGen/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqRecord.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/StandardData.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/Nodes.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/Nexus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/Trees.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.c -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nexus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Trees.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/StandardData.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/__pycache__/Nodes.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Medline/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Medline/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/Record.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/Geo/Record.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniGene/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/UniGene/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__pycache__ creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParamData.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__init__.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/MeltingTemp.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CodonUsageIndices.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/lcc.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/ProtParam.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CodonUsage.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/IsoelectricPoint.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CheckSum.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CodonUsage.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParamData.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/IsoelectricPoint.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/__init__.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/ProtParam.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/CodonUsageIndices.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/lcc.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/__pycache__/MeltingTemp.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Bio/SeqUtils/CheckSum.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/other_trees.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/tree1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Residues.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_MafIO_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NCBITextParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_codonalign.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_psycopg2_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_phenotype.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Uniprot.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_LogisticRegression.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/search_tests_common.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_UniGene.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Cla.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/InterProScan/test_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/InterProScan copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_clustal.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_DSSP.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/cnksr3.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/bug2453.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/corrupt.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/unfinished.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/invalid.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.mafindex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/bundle_without_target.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_big.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.mafindex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/wrong_version.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/length_coords_mismatch.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/humor.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_test.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10_bad.mafindex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MAF/ucsc_mm9_chr10.maf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MAF creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_product.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq2.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/pBAD30.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.faa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/gbvrl1_start.seq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485_output.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/tls_KDHP01000000.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/origin_line.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NT_019265.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/no_end_marker.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/tsa_acropora.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/extra_keywords.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_linear.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_accession.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_misc_feature.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/noref.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/GU949562.1.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_version.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/one_of.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_structured_comment.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_fuzzy.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/invalid_locus_line_spacing.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NP_416719.gbwithparts -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/KF527485.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/negative_location.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/1MRR_A.gp -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.ffn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/protein_refseq.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/cor6_6.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_loc_wrap.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.fna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/dbsource_wrap.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/HM138502_output.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/wrong_sequence_indent.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_write.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/DS830848.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/qualifier_escaping_read.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/pri1.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978_output.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/bad_origin_wrap_CDS.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/arab1.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_005816.tsv -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/empty_feature_qualifier.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/iro.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/blank_seq.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/no_origin_no_end.gb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-39296-sequence-49545.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/addgene-plasmid-11664-sequence-180430.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/NC_000932.faa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GenBank/EU851978.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GenBank copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_TCoffee_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_translate.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NCBI_BLAST_tools.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_StructureAlignment.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/seq_tests_common.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Mafft_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Selection.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta8.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta9.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/meta2.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/MetaTool/Meta3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/MetaTool creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Ace/consed_sample.ace -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Ace/seq.cap.ace -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Ace/contig1.ace -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Ace copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NaiveBayes.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Hie.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/pairwise2_testCases.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_tab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/out.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_write.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Entrez.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Raf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Muscle_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/CDAO/test.cdao -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CDAO copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_PdbIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PQR.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_hhr.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDBList.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_009.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_003.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_004.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_31b1_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_20_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_004.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_21_hmmpfam_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_003.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_010.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_008.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_003.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_004.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmsearch_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_004.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b1_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmpfam_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_30_hmmscan_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_007.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_006.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/tab_30_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_005.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_phmmer_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/domtab_31b1_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_31b2_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_24_hmmpfam_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_22_hmmsearch_001.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmscan_003.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_004.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_23_hmmpfam_003.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_002.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Hmmer/text_30_hmmsearch_005.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Hmmer creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-e.dna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-f.dna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SnapGene/sample-d.dna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SnapGene/pFA-KanMX4.dna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SnapGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_bigbed.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_SASA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Cluster.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_sam.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/biosql.ini.sample -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_forward.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_asis.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/needle.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_simple.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse1.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/short.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/cds_reverse.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.psearch -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse4.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_nobrief_multiple.pair -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/needle_overhang.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/no_oligo.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/internal_oligo.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/alignret.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse3.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/matcher_pair.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK_full.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water_reverse2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/NirK.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/emboss_pair_aln_full_blank_line.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/bac_find.primer3 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Emboss/water2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Emboss copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_SMCRA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_emboss.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_KDTree.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_pairwise2_no_C.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_convert.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GenBank.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Exposure.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Consensus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_phyml_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_cellosaurus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_EmbossPrimer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BWA_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/requires_internet.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_QualityIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhsearch_q9bsu1_uniclust_w_ss_pfamA_30.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_emptytable.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhsearch.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/allx.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/4y9h_hhsearch_server_NOssm.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/4p79_hhsearch_server_NOssm.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/hhpred_9590198.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/HHsuite/2uvo_hhblits_onlyheader.hhr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/HHsuite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/epost2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/taxonomy.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch4.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/journals.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed4.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed3.html -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo4.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/egquery1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch7.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary8.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink8.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_schemas.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink6.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/epost1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/ncbi_mim.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed6.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary6.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/nucleotide1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary9.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed7.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/biosample.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink5.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo3.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch8.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/espell.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch3.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/epost3.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/efetch_pmc.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink7.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch5.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/protein.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/einfo1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink4.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary4.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary3.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed5.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/elink3.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary5.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esearch6.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/esummary7.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Entrez/pubmed1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Entrez creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/meme.adh.classic.oops.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/SRF.pfm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/abdb.xms -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/minimal_test.meme -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/meme.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/meme.farntrans5.classic.anr.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/meme.INO_up800.classic.oops.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/fourcolumns.pfm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/MA0056.1.transfac -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.adh.de.oops.html.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/meme.psp_test.classic.zoops.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/REB1.pfm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/clusterbuster.pfm.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.Klf1-200.cd.oops.xml.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/Arnt.sites -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/transfac.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/fourrows.pfm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/mast.crp0.de.oops.txt.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/motifs/alignace.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/motifs copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_parse_pdb_header.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_exonerate.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Polypeptide.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_maf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_1_truncated.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BWA/HNSCC1_2_truncated.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BWA/human_g1k_v37_truncated.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BWA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Ace.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Cluster/cyano.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Cluster/README -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cluster creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/cac81.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/crei.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/pvuii.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/bamii.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/foki.htm -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Rebase/taqi.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Rebase creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.backbone -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.backbone -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.bbcols -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa.bbcols -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/simple_short.xmfa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.xmfa.bbcols -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/simple.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa.backbone -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/separate.xmfa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/canFam2.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/mm9.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/combined.xmfa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Mauve/equCab1.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Mauve copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_PDBIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-sqlite.sql -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-pg.sql -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BioSQL/cor6_6.db -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/BioSQL/biosqldb-mysql.sql -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/BioSQL creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P62258.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni002 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P39896.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp015 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni003 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/keywlist2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp012 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60137.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13639.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0CK95.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/O23729.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.list -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q7Z739.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.gff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/R5HY77.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/H2CNN8.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/uni001 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.rdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P60904.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P84001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P04439.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp013 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P0A186.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/sp016 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P97881.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P68308.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/Q13454.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/F2CXE6.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/multi_ex.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/README -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/O95832.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SwissProt/P16235.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SwissProt creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example1.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/dna_example.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/protein_example.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/global_species_example.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/corrupt_example2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SeqXML/rna_example.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SeqXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Emboss.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SffIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_CAPS.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Superimposer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Tutorial.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/msf/DOA_prot.msf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/msf/W_prot.msf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/msf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Dialign_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SeqXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_nexus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_bigmaf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/cow.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/pig.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/bsubtilis.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/hg38.chrom.sizes -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/cow.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/pig.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Align/ecoli.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Align creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/hla_3260_sample.imgt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/AE017046.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/101ma_no_coords.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/patents.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/U87107.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/epo_prt_selection.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/AAA03323.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/TRBG361.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/RepBase23.02.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/embl_with_0_line.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/xx_after_co.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/SC10H5.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/A04195.imgt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited2.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/DS830848.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/kipo_prt_sample.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/Human_contigs.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/DD231055_edited.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/EMBL/location_wrap.embl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/EMBL copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_features.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NMR.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hhsuite2_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_1.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Cellosaurus/cell_lines_3.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Cellosaurus creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_fshifts.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_dna2protein_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_cigar_fshifts2.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_fshifts2.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_trans_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ungapped_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_genome2genome.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_none.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2genome_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2genome_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_affine_local_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cigar_fshifts.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_cdna2genome_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_met_intron.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_est2genome.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna_fshifts.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_24_m_protein2genome_revcomp_fshifts.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_ner_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_q_multiple_cigar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_coding2coding_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_o_vulgar.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Exonerate/exn_22_m_protein2dna.exn -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Exonerate copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Clustalw_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Compass/comtest2 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Compass/comtest1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Compass copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_MarkovModel.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phd/phd1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phd/phd_454 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phd/phd2 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phd/phd_solexa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phd copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Wise/human_114_g02_exons.fna_01 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Wise/human_114_g01_exons.fna_01 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Wise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KeyWList.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Affy.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/output.best.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_align_substitution_matrices.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_seq.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_NACCESS.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_MySQLdb_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NCBI_qblast.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Application.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_CEAligner.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_a2m.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phylo_CDAO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_psl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Pathway.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-c.xprt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-a.xdna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Xdna/sample-b.xdna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Xdna copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phd.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PAML_yn00.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Insdc.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Nexus.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blat_psl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_PSEA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqUtils.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_bigpsl.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GraphicsGeneral.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_pairwise2.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Entrez_parser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_Alignment.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/opuntia.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/protein.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/hedgehog.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/muscle.a2m -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.a2m -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.a2m -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/odd_consensus.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.a2m -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/clustalw.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/msaprobs.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/temp horses.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/probcons.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/kalign.a2m -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Clustalw/promals3d.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Clustalw copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_HMMGeneral.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer2_text_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NBRF/DMA_nuc.pir -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NBRF/DMB_prot.pir -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NBRF/B_nuc.pir -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NBRF/clustalw.pir -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NBRF/Cw_prot.pir -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NBRF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_EmbossIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsagsosrT copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_CodonTable.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KEGG_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GraphicsDistribution.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/run_tests.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_ProtParam.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model6-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model0-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model7-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model5-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model4-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model8-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model1-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model3-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/model/model2-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/model creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK3-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK1-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK4-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nparK/nparK2-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nparK creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/alpha1rho1/alpha1rho1-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/alpha1rho1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_SE.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/baseml_alpha1rho1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml41.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml43.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/versions/baseml44.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/versions creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/SE/SE-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/SE creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo3-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo4-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/baseml/nhomo/nhomo1-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/baseml/nhomo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/bad_results.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/all_NSsites/all_NSsites-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/all_NSsites creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene02-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene02 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_8.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_9a.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/m2a_rel/m2a_rel-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/m2a_rel creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/freeratio creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_model0/aa_model0-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_model0 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/pairwise creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/NSsite3/NSsite3-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/NSsite3 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/clademodelC/clademodelC-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/clademodelC creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/branchsiteA/branchsiteA-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/branchsiteA creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene34 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/aa_pairwise/aa_pairwise-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/aa_pairwise creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/ngene2_mgene1 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/tree_regexp_versatility.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/codeml/SE/SE-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/codeml/SE creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_6.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dotted-4_9i.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_5.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4c.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_dottednum-4_9i.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_8.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_1.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_3.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_4.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00-4_7.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Results/yn00/yn00_long-4_8.out -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Results/yn00 creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/species.tree -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/bad.tree -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees.4.6 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Trees/lysin.trees -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Trees creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/species.tree -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/alpha1rho1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK2.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model7.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model2.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/baseml.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/SE.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo3.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK3.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model3.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model6.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK4.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nparK1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model4.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model5.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model0.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/model8.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml/nhomo4.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/baseml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/baseml.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad3.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/all_NSsites.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/clademodelC.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/freeratio.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene34.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/SE.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/pairwise.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_pairwise.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/NSsite3.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/m2a_rel.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/branchsiteA.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/aa_model0.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/ngene2_mgene02.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/codeml/codeml.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/codeml creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dotted.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_dottednum.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/yn00/yn00_long.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files/yn00 copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad2.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Control_files/bad1.ctl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Control_files creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednum.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/lysinYangSwanson2002.nuc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/longnames.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/dottednames.phylip -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/aa_alignment.phylip -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/Alignments/alignment.phylip -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/Alignments copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PAML/gen_results.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_mauve.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate_2.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlates.csv -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate_2.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/SmallPlate.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/Plates.csv -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/BadPlate.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/phenotype/Plate.json -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/phenotype copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_kNN.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniProt/gene_association.goa_yeast.1.gaf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gpa.59.gpa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_human_sample.gpi -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniProt/gp_information.goa_yeast.28.gpi -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniProt/goa_yeast.gaf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniProt copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Chi2.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_NCBIXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GenomeDiagram.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_prosite.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/output.best.fas -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_bgzf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_vulgar_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_UniProt_GOA.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqRecord.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_interproscan_xml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_phylip.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_vectors.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Enzyme.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Registry/EDD_RAT.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Registry/bt001 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Registry/seqs.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Registry creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/pro2.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_pro.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl2.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/drosophilla.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/pro1.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/pro3.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_nucl.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/egfr_id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/adh.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl1.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/pro4.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl4.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/pro5.aln -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl5.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/codonalign/nucl3.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/codonalign copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/common_BioSQL_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/two.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/sequential2.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/reference_dna2.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/three.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.tree -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/hennigian.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/six.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/five.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/random.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/interlaced2.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/horses.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/one.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Phylip/four.dat -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Phylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_FastaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_phenotype_fit.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_TwoBitIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PAML_codeml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_sqlite3.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001_v2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_006.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2216L_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_003.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_013.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2215L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2220L_blastx_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001_v2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_wait.html -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001_v2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_003.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_005.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_005.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/html_msgid_29_blastx_001.html -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_007.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2222L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_004.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_004.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastx_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_003.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_orchid.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_actin.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_005.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_tblastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2014L_psiblast_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2230_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2014L_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2012L_psiblast_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_005.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2201L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2208L_psiblast_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_007.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_004.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_rpsblast_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2102L_blastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_012.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_011.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2222_blastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastx_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_007.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_002.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_010.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2222_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_disco.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_003.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastp_006.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2228_tblastn_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_tblastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2202L_blastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_empty.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_short_result.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastp_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_008.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastx_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastp_003.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2218L_blastp_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_blastp_005.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_tblastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_phiblast_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastx_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastx_001_v2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mirna.tab -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2011L_phiblast_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/mock_pcr.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_005.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2221L_blastp_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_blastx_001_v2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_004.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_blastn_006.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_009.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2226_tblastx_004.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/wnts.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_002.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2900_tblastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_blastx_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/tab_2226_tblastn_006.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2226_tblastn_004.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2010L_blastn_003.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/text_2220L_blastx_001.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blast/xml_2212L_blastn_001.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blast creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Des.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Residues.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ClustalOmega_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Ace.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_baseml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_RCSBFormats.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bed.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prosite.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_mauve.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_qblast.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqUtils.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NMR.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Medline.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Uniprot.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBIXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/pairwise2_testCases.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigpsl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_FastaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_psl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Insdc.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_text_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_bgzf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Superimposer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Dice.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Emboss.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_interproscan_xml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype_fit.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Wise.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenomeDiagram.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_hhr.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ProtParam.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Raf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Consensus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Gck.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_nographics.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phyml_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_write.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_codonalign.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align_substitution_matrices.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniProt_GOA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_legacy.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Restriction.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_StructureAlignment.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigbed.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_UniGene.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_translate.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Cluster.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDBList.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Disordered.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GenBank.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Chi2.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignInfo.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ColorSpiral.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_matplotlib.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_MauveIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_tabular.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqRecord.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBI_BLAST_tools.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_CDAO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_yn00.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsChromosome.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_Alignment.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsDistribution.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIF2Dict.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_LogisticRegression.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/requires_internet.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Clustalw_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hhsuite2_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_FastaIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_QualityIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_a2m.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Application.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_domtab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_vectors.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_samtools_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BWA_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Dialign_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PAML_codeml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_NeXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Exposure.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TreeConstruction.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Pathway.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_tab_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_QCSuperimposer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/seq_tests_common.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KGML_graphics.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_ExPASy.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_PdbIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Mafft_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blat_psl.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SMCRA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_geo.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_psycopg2_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_aligner.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_sam.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Astral.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Polypeptide.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CodonTable.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_prodoc.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_DSSP.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NCBITextParser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SVDSuperimposer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PDBIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_write.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EMBL_unittest.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate_vulgar_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_fasta_m10_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_maf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Prank_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MarkovModel.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_seq.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Probcons_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SffIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/search_tests_common.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_FragmentMapper.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2_no_C.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_convert.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_MMCIFIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_PhylipIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_xml.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_CAPS.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PhyloXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_EmbossIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_parse_pdb_header.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_phenotype.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TCoffee_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_emboss.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SeqXML.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Hie.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Fasttree_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_SnapGene.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Compass.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KEGG.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Cla.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_NaiveBayes.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Enzyme.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Dom.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_exonerate.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_align.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_TwoBitIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_bigmaf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Muscle_tool.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SCOP_Scop.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_MafIO_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text_index.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_fasta.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/common_BioSQL_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsBitmaps.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_internal_coords.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMGeneral.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phd.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_model.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise_alignment_map.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_nexus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Phylo_networkx.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_msf.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Nexus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_PSEA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Seq_objs.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_TogoWS.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_HMMCasino.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SwissProt.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_features.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_sqlite3.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer3_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_hmmer2_text.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_stockholm.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_EmbossPrimer.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_kNN.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Blast_Record.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_pairwise2.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_cellosaurus.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Entrez_parser.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_KeyWList.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PopGen_GenePop_nodepend.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqFeature.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_CEAligner.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_KDTree.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_AlignIO_ClustalIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PQR.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_MySQLdb_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_BioSQL_mysql_connector_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_clustal.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_NACCESS.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Affy.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_exonerate.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_Xdna.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Tutorial.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_Selection.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_File.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_motifs_online.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SearchIO_blast_tab.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_NibIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_GraphicsGeneral.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_PDB_SASA.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_SeqIO_AbiIO.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/__pycache__/test_Align_phylip.cpython-311.pyc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/__pycache__ copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Dom.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_domtab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SVDSuperimposer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_NibIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_motifs_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Dice.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_hmmer3_tab.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00159.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00165.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00149.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00472.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00100.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00144.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00640.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/prosite.excerpt.doc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00113.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00787.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00933.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00340.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/Doc/pdoc00424.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite/Doc copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00107.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00488.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00546.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Prosite/ps00432.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Prosite copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PhyloXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.qual -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_at_start.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/paired.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/greek.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_paired_E3MFGYR02.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/invalid_greek_E3MFGYR02.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_end.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_index_in_middle.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_at_start.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_no_manifest.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/E3MFGYR02_alt_index_in_middle.sff -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Roche/triple_sff_rel_paths.idx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Roche creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/FSSP/1cnv.fssp -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/FSSP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Probcons_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_seq.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_short_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_original_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_escape.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_unit_sep.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_original_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_original_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_space.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_original_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/tricky.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_faked.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example.qual -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_original_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_plus.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_spaces.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_faked.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_no_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_original_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_long_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_null.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.gz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_tabs.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example.fastq.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/illumina_full_range_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_in_title.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_illumina.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_tab.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/zero_length.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_seq.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_seq.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/longreads_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_full_range_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/sanger_93.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_double_qual.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/example_dos.fastq.bgz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_diff_ids.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/wrapping_as_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_dna_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_vtab.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_faked.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_full_range_original_solexa.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/misc_rna_as_sanger.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_trunc_at_plus.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/error_qual_del.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Quality/solexa_example.fastq -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Blast_Record.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/.coveragerc -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_stockholm.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phylo_matplotlib.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Prank_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phylo_networkx.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_TogoWS.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_002.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_005.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed6.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_002.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bigbed_extended.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/README.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_002.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_35_001.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_004.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_001.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed3.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_004.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/rna.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed7.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_005.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_003.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/pslx_34_001.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bigbedtest.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed4.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bigPsl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_002.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/mirna.pslx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/balAcu1.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed8.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/fasta_34.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/hg38.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/CAG33136.1.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed9.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_34_003.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed5.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.bed -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/dna_rna.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/psl_35_001.psl.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Blat/bed12.bb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Blat creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802x.fna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001422.gbk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GFF/multi.fna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802lc.fna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/GFF/NC_001802.fna -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/GFF copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_SnapGene.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_fasta.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Des.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_TreeConstruction.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_legacy.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Gck/artificial.gck -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Gck copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_tabular.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KGML_graphics_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/test.log -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/msa.phy -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/neighbor_trees.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj_min.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/nj.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/majority_ref.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/upgma.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/strict_refs.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/adam_refs.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/consensus_refs.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/trees.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TreeConstruction/pars3.tre -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TreeConstruction creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.sample -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/ko03070.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.new -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00253.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/gene.sample -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/map00950.rea -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.irregular -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/compound.sample -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/ko00010.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/ko01100.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/map01100.png -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.irregular -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/enzyme.4letter -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/KEGG/map03070.png -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/KEGG copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Seq_objs.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PQR/1A80.pqr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PQR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/biosql.ini.appveyor -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_HMMCasino.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_BioSQL_mysql_connector_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqFeature.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GraphicsChromosome.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Gck.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v4_example.CEL -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Affy/affy_v3_example.CEL -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Affy copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_EMBL_unittest.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_littleendian.nib -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_odd_bigendian.nib -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_even.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_littleendian.nib -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nib/test_even_bigendian.nib -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nib creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_linear.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_circular.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_1.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_linear.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_meth_circular.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_transparency.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigils.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/spiral_test.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_JAGGY_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_widths.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/random_organism.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_labels.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/line_graph.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_original.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_OCTO_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_transparency.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrows_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_OCTO_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.eps -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/tRNA_chrom_sf.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/simple_bar.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_bigarrow_shafts.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_ARROW_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/square_test.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_ARROW.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map03070_colors.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_linear.svg -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/scatter_test_7.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_short_BIGARROW_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_frag_circular.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_JAGGY.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/multi_bar.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.svg -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_long_BIGARROW_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/labels_default.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/organism.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_sigil_arrow_shafts_c.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/README -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_region_circular.svg -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/map01100_original.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Graphics/GD_by_obj_linear.pdf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Graphics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_samtools_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_align.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_File.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Astral.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_model.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_Disordered.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/sam1.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/sam2.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_refresh.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/bam1_sorted.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/bam2_sorted.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.sam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/ex1_header.bam -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SamBam/readme.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SamBam copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_Scop.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_FragmentMapper.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/tolweb.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/trees-uris.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/taxa.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_types.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/phenoscape.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/timetree.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/nexml.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/meta_taxa.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/edgelabels.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/treebase-record.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/trees.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/sets.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeXML/characters.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeXML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.asa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1MOM_min.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1AS5.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.mmtf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/Sander_RASA.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A7G.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/disordered.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/dssp_xtra_Sander.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/4CUP.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/Wilke_RASA.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2OFG.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN_aligned.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/Ahmad_RASA.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG_noheader.dssp -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2n0n_M1.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.mmtf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.rsa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1SSU_mod.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/3JQH.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.dssp -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/7CFN.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/alignment_file.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/a_structure.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/4ZHL.mmtf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/d256ba_.ent -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/occupancy.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/ions.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/lib_10_z_5.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2BEG.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1LCD.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/2XHE.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/Miller_RASA.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/header.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/7DDO.pdb -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/4Q9R_min.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/6WQA.cif -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PDB/1A8O.xyzr -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PDB copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Enzymes/lactate.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Enzymes/lipoprotein.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Enzymes/proline.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Enzymes/valine.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Enzymes copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_xml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_write.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/distribution.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/apaf.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/example.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/bcl_2.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/made_up.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/phyloxml_examples.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PhyloXML/o_tol_332_d_dollo.xml -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PhyloXML creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_lib.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/sweetpea.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output009.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/f001 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/rose.pro -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output001.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output002.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/centaurea.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/f003 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/dups.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output007.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CC.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/lupine.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output010.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output011.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output003.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/lavender.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/f002 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output004.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/aster_no_wrap.pro -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/rosemary.pro -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output006.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output015.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/wisteria.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/loveliesbleeding.pro -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/tc_out.msf -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output005.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/phlox.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output012.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/aster.pro -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/fa01 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_lib.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CC.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output014.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output008.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/elderberry.nu -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output013.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/output016.m10 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/flowers.pro.gz -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/README -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/protein_m8CB.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Fasta/nucleotide_m8CB.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Fasta copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignInfo.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_ClustalOmega_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Saf/saf1.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Saf copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Wise.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_fasta_m10_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_PhylipIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KGML_nographics.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_FastaIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phylo.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_prodoc.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PAML_baseml.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.des.scop.txt_test -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.hie.scop.txt_test -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP/scopseq-test copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/testDom.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/dir.cla.scop.txt_test -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SCOP/raftest.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SCOP copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_geo.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NMR/noed.xpk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NMR/out_example.xpk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NMR creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/vpu_nucaligned.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/TAT_mase_nuc.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/IntelliGenetics/VIF_mase-pro.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/IntelliGenetics copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_msf.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/aaDistrib.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/acc_rep_mat.pik -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_freq.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/protein_count.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAADistrib.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/SubsMat/redAltAADistrib.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/SubsMat copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Fasttree_tool.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo2.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/c2space.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/c3line.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/c3space.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/haplo3.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/c2line.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/big.gen -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/PopGen/README -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PopGen copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_AbiIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_pairwise_aligner.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_ExPASy.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/int_node_labels.nwk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Oreiscelio_discrete+continuous.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/bats.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/codonposset.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/ByteOrderMarkFile.nwk -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/test_Nexus_input.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Ganaspidium_multistate.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/vSysLab_Heptascelio_no-states_10+chars.nex -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Nexus/test.new -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Nexus creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result2.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result1.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Medline/pubmed_result3.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Medline creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/GSM700.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_family.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy_chp.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/GSM645.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_platform.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/GSM804.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/GSE16.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_affy.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_dual.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/soft_ex_series.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Geo/GSM691.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Geo copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_pairwise_alignment_map.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_internal_coords.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Phylo_NeXML.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_MauveIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIF2Dict.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam2.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam3.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam6.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath2.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam1.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam7.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/globins45.ali -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam4.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam5.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam8.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/simple.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam4.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam5.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam2.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/funny.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/example.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath3.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/rfam1.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam9.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/cath1.sth -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Stockholm/pfam3.seed.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Stockholm copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_AlignIO_ClustalIO.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PopGen_GenePop_nodepend.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_blast_text.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_GraphicsBitmaps.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_RCSBFormats.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_QCSuperimposer.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SwissProt.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_motifs.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Medline.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniGene/Mdm_partial.data -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniGene/Hs.2.data -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/UniGene/Eca.1.2425.data -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/UniGene creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/CodonUsage/HighlyExpressedGenes.txt -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/CodonUsage copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/common_BioSQL.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Align_bed.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/ExtendedPhylip/primates.phyx -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/ExtendedPhylip copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_KEGG.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/enolase.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/NeuralNetwork/repeat.fasta -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/NeuralNetwork copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_PDB_MMCIFParser.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/test.fsa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/A6_1-DB3.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/3730.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/310.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/nonascii_encoding.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/empty.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/no_smpl1.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/test_data -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/3100.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/Abi/fake.ab1 -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/Abi copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SCOP_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.bigendian.2bit -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.littleendian.2bit -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.fa -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/TwoBit/sequence.long.2bit -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/TwoBit copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Compass.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Entrez_online.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SeqIO_Xdna.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_SearchIO_exonerate_text_index.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_Restriction.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests creating /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/tmpdirprankmsawjKh1K copying /build/python-biopython-1.80+dfsg/.pybuild/cpython3_3.11/build/Tests/test_ColorSpiral.py -> /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/DBUtils.py to DBUtils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeq.py to BioSeq.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/BioSeqDatabase.py to BioSeqDatabase.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/BioSQL/Loader.py to Loader.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/www_blast.py to www_blast.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/swissprot.py to swissprot.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/Proux_et_al_2002_Figure_6.py to Proux_et_al_2002_Figure_6.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/clustal_run.py to clustal_run.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_iterator.py to fasta_iterator.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/nmr/simplepredict.py to simplepredict.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/fasta_dictionary.py to fasta_dictionary.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Doc/examples/ACT_example.py to ACT_example.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Ace.py to Ace.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Phd.py to Phd.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_bwa.py to _bwa.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_Novoalign.py to _Novoalign.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Sequencing/Applications/_samtools.py to _samtools.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_index.py to _index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/query.py to query.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hsp.py to hsp.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/_base.py to _base.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_model/hit.py to hit.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_text.py to hmmer3_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/_base.py to _base.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer2_text.py to hmmer2_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_domtab.py to hmmer3_domtab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HmmerIO/hmmer3_tab.py to hmmer3_tab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlatIO.py to BlatIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_xml.py to blast_xml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_text.py to blast_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/BlastIO/blast_tab.py to blast_tab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_cigar.py to exonerate_cigar.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/_base.py to _base.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_text.py to exonerate_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/ExonerateIO/exonerate_vulgar.py to exonerate_vulgar.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/ParserSupport.py to ParserSupport.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_legacy/NCBIStandalone.py to NCBIStandalone.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/HHsuiteIO/hhsuite2_text.py to hhsuite2_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/InterproscanIO/interproscan_xml.py to interproscan_xml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SearchIO/_utils.py to _utils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Scanner.py to Scanner.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/utils.py to utils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/GenBank/Record.py to Record.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Seq.py to Seq.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/TogoWS/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction_Dictionary.py to Restriction_Dictionary.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/PrintFormat.py to PrintFormat.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Restriction/Restriction.py to Restriction.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Applications.py to Applications.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/PrimerSearch.py to PrimerSearch.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Emboss/Primer3.py to Primer3.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SVDSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqFeature.py to SeqFeature.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/kNN.py to kNN.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/MultiGraph.py to MultiGraph.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Pathway/Rep/Graph.py to Graph.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Entrez/Parser.py to Parser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/jaspar/db.py to db.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/alignace.py to alignace.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/minimal.py to minimal.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/meme.py to meme.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/transfac.py to transfac.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/matrix.py to matrix.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/xms.py to xms.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/clusterbuster.py to clusterbuster.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/mast.py to mast.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/pfm.py to pfm.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/thresholds.py to thresholds.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/motifs/applications/_xxmotif.py to _xxmotif.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/LogisticRegression.py to LogisticRegression.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/MarkovModel.py to MarkovModel.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/DynamicProgramming.py to DynamicProgramming.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Trainer.py to Trainer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/HMM/Utilities.py to Utilities.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Application/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/_index.py to _index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/InsdcIO.py to InsdcIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/IgIO.py to IgIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TwoBitIO.py to TwoBitIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AceIO.py to AceIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/TabIO.py to TabIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/XdnaIO.py to XdnaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PdbIO.py to PdbIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PhdIO.py to PhdIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/AbiIO.py to AbiIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SwissIO.py to SwissIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/QualityIO.py to QualityIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/PirIO.py to PirIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/GckIO.py to GckIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SnapGeneIO.py to SnapGeneIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/UniprotIO.py to UniprotIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SffIO.py to SffIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/SeqXmlIO.py to SeqXmlIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqIO/NibIO.py to NibIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Cluster/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SwissProt/KeyWList.py to KeyWList.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/phylip.py to phylip.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/msf.py to msf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/sam.py to sam.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bed.py to bed.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigpsl.py to bigpsl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/emboss.py to emboss.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/nexus.py to nexus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/maf.py to maf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Clustalw.py to _Clustalw.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Prank.py to _Prank.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Probcons.py to _Probcons.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_MSAProbs.py to _MSAProbs.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Mafft.py to _Mafft.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_ClustalOmega.py to _ClustalOmega.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Dialign.py to _Dialign.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_Muscle.py to _Muscle.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/Applications/_TCoffee.py to _TCoffee.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/a2m.py to a2m.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/substitution_matrices/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/hhr.py to hhr.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/AlignInfo.py to AlignInfo.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/mauve.py to mauve.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/fasta.py to fasta.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigbed.py to bigbed.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/stockholm.py to stockholm.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/clustal.py to clustal.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/interfaces.py to interfaces.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/tabular.py to tabular.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/exonerate.py to exonerate.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/bigmaf.py to bigmaf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Align/psl.py to psl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/File.py to File.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Compass/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/psw.py to psw.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Wise/dnal.py to dnal.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/PDBData.py to PDBData.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/IUPACData.py to IUPACData.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/SCOPData.py to SCOPData.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Data/CodonTable.py to CodonTable.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NaiveBayes.py to NaiveBayes.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prodoc.py to Prodoc.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Enzyme.py to Enzyme.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/ScanProsite.py to ScanProsite.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/Prosite.py to Prosite.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/ExPASy/cellosaurus.py to cellosaurus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/phen_micro.py to phen_micro.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/phenotype/pm_fitting.py to pm_fitting.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniProt/GOA.py to GOA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/bgzf.py to bgzf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Alphabet/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/CAPS/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/pairwise2.py to pairwise2.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonalignment.py to codonalignment.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/codonalign/codonseq.py to codonseq.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIXML.py to NCBIXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Applications.py to Applications.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/ParseBlastTable.py to ParseBlastTable.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/NCBIWWW.py to NCBIWWW.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Blast/Record.py to Record.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/ClustalIO.py to ClustalIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MsfIO.py to MsfIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/FastaIO.py to FastaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/PhylipIO.py to PhylipIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MafIO.py to MafIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/MauveIO.py to MauveIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/Interfaces.py to Interfaces.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/EmbossIO.py to EmbossIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/AlignIO/StockholmIO.py to StockholmIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/MaxEntropy.py to MaxEntropy.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Gene/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Compound/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_pathway.py to KGML_pathway.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/KGML/KGML_parser.py to KGML_parser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Map/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/Enzyme/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/KEGG/REST.py to REST.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Affy/CelFile.py to CelFile.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/DisplayRepresentation.py to DisplayRepresentation.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Comparative.py to Comparative.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/ColorSpiral.py to ColorSpiral.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/BasicChromosome.py to BasicChromosome.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Feature.py to _Feature.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CircularDrawer.py to _CircularDrawer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_FeatureSet.py to _FeatureSet.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Graph.py to _Graph.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_AbstractDrawer.py to _AbstractDrawer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_LinearDrawer.py to _LinearDrawer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Track.py to _Track.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_GraphSet.py to _GraphSet.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_CrossLink.py to _CrossLink.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Diagram.py to _Diagram.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/GenomeDiagram/_Colors.py to _Colors.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/Distribution.py to Distribution.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Graphics/KGML_vis.py to KGML_vis.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/_utils.py to _utils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/parse_pdb_header.py to parse_pdb_header.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NACCESS.py to NACCESS.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/HSExposure.py to HSExposure.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/QCPSuperimposer/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBParser.py to PDBParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SCADIO.py to SCADIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Polypeptide.py to Polypeptide.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Superimposer.py to Superimposer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/internal_coords.py to internal_coords.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureBuilder.py to StructureBuilder.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/NeighborSearch.py to NeighborSearch.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Structure.py to Structure.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PSEA.py to PSEA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/vectors.py to vectors.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Atom.py to Atom.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/StructureAlignment.py to StructureAlignment.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/DSSP.py to DSSP.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/FragmentMapper.py to FragmentMapper.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/qcprot.py to qcprot.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Entity.py to Entity.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Model.py to Model.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmcifio.py to mmcifio.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/DefaultParser.py to DefaultParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/mmtf/mmtfio.py to mmtfio.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBIO.py to PDBIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBExceptions.py to PDBExceptions.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/SASA.py to SASA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ResidueDepth.py to ResidueDepth.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Residue.py to Residue.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/cealign.py to cealign.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIF2Dict.py to MMCIF2Dict.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_rebuild.py to ic_rebuild.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/MMCIFParser.py to MMCIFParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Selection.py to Selection.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/AbstractPropertyMap.py to AbstractPropertyMap.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Dice.py to Dice.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PDBList.py to PDBList.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/PICIO.py to PICIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/Chain.py to Chain.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PDB/ic_data.py to ic_data.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Dom.py to Dom.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Raf.py to Raf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Des.py to Des.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Hie.py to Hie.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Cla.py to Cla.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SCOP/Residues.py to Residues.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/NOEtools.py to NOEtools.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/NMR/xpktools.py to xpktools.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Consensus.py to Consensus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAOIO.py to CDAOIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NewickIO.py to NewickIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/TreeConstruction.py to TreeConstruction.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Newick.py to Newick.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/CDAO.py to CDAO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXML.py to NeXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_io.py to _io.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NexusIO.py to NexusIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/codeml.py to codeml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/chi2.py to chi2.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_yn00.py to _parse_yn00.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/yn00.py to yn00.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_codeml.py to _parse_codeml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_parse_baseml.py to _parse_baseml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/_paml.py to _paml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PAML/baseml.py to baseml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Fasttree.py to _Fasttree.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Phyml.py to _Phyml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/Applications/_Raxml.py to _Raxml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/BaseTree.py to BaseTree.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXMLIO.py to PhyloXMLIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_utils.py to _utils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/PhyloXML.py to PhyloXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/NeXMLIO.py to NeXMLIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Phylo/_cdao_owl.py to _cdao_owl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/Controller.py to Controller.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/LargeFileParser.py to LargeFileParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/FileParser.py to FileParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/GenePop/EasyController.py to EasyController.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/PopGen/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqRecord.py to SeqRecord.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/StandardData.py to StandardData.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nodes.py to Nodes.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Nexus.py to Nexus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Nexus/Trees.py to Trees.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Medline/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/Geo/Record.py to Record.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/UniGene/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParamData.py to ProtParamData.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/MeltingTemp.py to MeltingTemp.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CodonUsageIndices.py to CodonUsageIndices.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/lcc.py to lcc.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/ProtParam.py to ProtParam.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CodonUsage.py to CodonUsage.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/IsoelectricPoint.py to IsoelectricPoint.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Bio/SeqUtils/CheckSum.py to CheckSum.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Residues.py to test_SCOP_Residues.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MafIO_index.py to test_MafIO_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBITextParser.py to test_NCBITextParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_codonalign.py to test_codonalign.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10.py to test_SearchIO_fasta_m10.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_psycopg2_online.py to test_BioSQL_psycopg2_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype.py to test_phenotype.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Uniprot.py to test_Uniprot.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_LogisticRegression.py to test_LogisticRegression.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/search_tests_common.py to search_tests_common.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniGene.py to test_UniGene.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Cla.py to test_SCOP_Cla.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab_index.py to test_SearchIO_blast_tab_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl_index.py to test_SearchIO_blat_psl_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_clustal.py to test_Align_clustal.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_DSSP.py to test_PDB_DSSP.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBParser.py to test_PDB_PDBParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TCoffee_tool.py to test_TCoffee_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_translate.py to test_translate.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_BLAST_tools.py to test_NCBI_BLAST_tools.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_StructureAlignment.py to test_PDB_StructureAlignment.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/seq_tests_common.py to seq_tests_common.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Mafft_tool.py to test_Mafft_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Selection.py to test_PDB_Selection.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NaiveBayes.py to test_NaiveBayes.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text.py to test_SearchIO_hmmer2_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Hie.py to test_SCOP_Hie.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/pairwise2_testCases.py to pairwise2_testCases.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_tab.py to test_SearchIO_blast_tab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_write.py to test_SeqIO_write.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez.py to test_Entrez.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Raf.py to test_SCOP_Raf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Muscle_tool.py to test_Muscle_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_PdbIO.py to test_SeqIO_PdbIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PQR.py to test_PQR.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_hhr.py to test_Align_hhr.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDBList.py to test_PDBList.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigbed.py to test_Align_bigbed.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate.py to test_SearchIO_exonerate.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector.py to test_BioSQL_mysql_connector.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SASA.py to test_PDB_SASA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab_index.py to test_SearchIO_hmmer3_tab_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Cluster.py to test_Cluster.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_sam.py to test_Align_sam.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_SMCRA.py to test_PDB_SMCRA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_emboss.py to test_Align_emboss.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_KDTree.py to test_PDB_KDTree.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2_no_C.py to test_pairwise2_no_C.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_convert.py to test_AlignIO_convert.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenBank.py to test_GenBank.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFIO.py to test_PDB_MMCIFIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Exposure.py to test_PDB_Exposure.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Consensus.py to test_Consensus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phyml_tool.py to test_phyml_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_cellosaurus.py to test_cellosaurus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab_index.py to test_SearchIO_hmmer3_domtab_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EmbossPrimer.py to test_EmbossPrimer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BWA_tool.py to test_BWA_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/requires_internet.py to requires_internet.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_QualityIO.py to test_SeqIO_QualityIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml_index.py to test_SearchIO_blast_xml_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_parse_pdb_header.py to test_PDB_parse_pdb_header.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_exonerate.py to test_Align_exonerate.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Polypeptide.py to test_PDB_Polypeptide.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_maf.py to test_Align_maf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Ace.py to test_Ace.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PDBIO.py to test_PDB_PDBIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Emboss.py to test_Emboss.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SffIO.py to test_SffIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CAPS.py to test_CAPS.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Superimposer.py to test_PDB_Superimposer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Tutorial.py to test_Tutorial.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Dialign_tool.py to test_Dialign_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SeqXML.py to test_SeqIO_SeqXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_nexus.py to test_Align_nexus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigmaf.py to test_Align_bigmaf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_features.py to test_SeqIO_features.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NMR.py to test_NMR.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hhsuite2_text.py to test_SearchIO_hhsuite2_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Clustalw_tool.py to test_Clustalw_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_MarkovModel.py to test_MarkovModel.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text_index.py to test_SearchIO_hmmer3_text_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KeyWList.py to test_KeyWList.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Affy.py to test_Affy.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align_substitution_matrices.py to test_align_substitution_matrices.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_seq.py to test_seq.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_NACCESS.py to test_PDB_NACCESS.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_MySQLdb_online.py to test_BioSQL_MySQLdb_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBI_qblast.py to test_NCBI_qblast.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Application.py to test_Application.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_CEAligner.py to test_PDB_CEAligner.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_a2m.py to test_Align_a2m.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_CDAO.py to test_Phylo_CDAO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_text.py to test_SearchIO_hmmer3_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_psl.py to test_Align_psl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Pathway.py to test_Pathway.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phd.py to test_Phd.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_yn00.py to test_PAML_yn00.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Insdc.py to test_SeqIO_Insdc.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO.py to test_SeqIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Nexus.py to test_Nexus.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blat_psl.py to test_SearchIO_blat_psl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_PSEA.py to test_PDB_PSEA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqUtils.py to test_SeqUtils.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bigpsl.py to test_Align_bigpsl.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsGeneral.py to test_GraphicsGeneral.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise2.py to test_pairwise2.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_parser.py to test_Entrez_parser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_Alignment.py to test_Align_Alignment.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_index.py to test_SeqIO_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMGeneral.py to test_HMMGeneral.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer2_text_index.py to test_SearchIO_hmmer2_text_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_EmbossIO.py to test_AlignIO_EmbossIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_CodonTable.py to test_CodonTable.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG_online.py to test_KEGG_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsDistribution.py to test_GraphicsDistribution.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/run_tests.py to run_tests.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ProtParam.py to test_ProtParam.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/PAML/gen_results.py to gen_results.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_mauve.py to test_Align_mauve.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_kNN.py to test_kNN.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Chi2.py to test_Chi2.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_NCBIXML.py to test_NCBIXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GenomeDiagram.py to test_GenomeDiagram.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prosite.py to test_prosite.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_bgzf.py to test_bgzf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_vulgar_index.py to test_SearchIO_exonerate_vulgar_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_UniProt_GOA.py to test_UniProt_GOA.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqRecord.py to test_SeqRecord.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_interproscan_xml.py to test_SearchIO_interproscan_xml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_phylip.py to test_Align_phylip.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_vectors.py to test_PDB_vectors.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Enzyme.py to test_Enzyme.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3_online.py to test_BioSQL_sqlite3_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL_online.py to common_BioSQL_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_FastaIO.py to test_AlignIO_FastaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_phenotype_fit.py to test_phenotype_fit.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_TwoBitIO.py to test_SeqIO_TwoBitIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_codeml.py to test_PAML_codeml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_sqlite3.py to test_BioSQL_sqlite3.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Dom.py to test_SCOP_Dom.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_domtab.py to test_SearchIO_hmmer3_domtab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SVDSuperimposer.py to test_SVDSuperimposer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_NibIO.py to test_SeqIO_NibIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs_online.py to test_motifs_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Dice.py to test_PDB_Dice.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_hmmer3_tab.py to test_SearchIO_hmmer3_tab.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PhyloXML.py to test_PhyloXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics.py to test_KGML_graphics.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Probcons_tool.py to test_Probcons_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Blast_Record.py to test_Blast_Record.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_stockholm.py to test_Align_stockholm.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_matplotlib.py to test_Phylo_matplotlib.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Prank_tool.py to test_Prank_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_networkx.py to test_Phylo_networkx.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TogoWS.py to test_TogoWS.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_SnapGene.py to test_SeqIO_SnapGene.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_fasta.py to test_Align_fasta.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Des.py to test_SCOP_Des.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_TreeConstruction.py to test_TreeConstruction.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_legacy.py to test_SearchIO_legacy.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_online.py to test_SeqIO_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_tabular.py to test_Align_tabular.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_graphics_online.py to test_KGML_graphics_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Seq_objs.py to test_Seq_objs.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_HMMCasino.py to test_HMMCasino.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_BioSQL_mysql_connector_online.py to test_BioSQL_mysql_connector_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqFeature.py to test_SeqFeature.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsChromosome.py to test_GraphicsChromosome.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Gck.py to test_SeqIO_Gck.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_EMBL_unittest.py to test_EMBL_unittest.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_samtools_tool.py to test_samtools_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_align.py to test_align.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_File.py to test_File.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Astral.py to test_SCOP_Astral.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_model.py to test_SearchIO_model.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_Disordered.py to test_PDB_Disordered.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_Scop.py to test_SCOP_Scop.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_FragmentMapper.py to test_PDB_FragmentMapper.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO.py to test_AlignIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_xml.py to test_SearchIO_blast_xml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_write.py to test_SearchIO_write.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignInfo.py to test_AlignInfo.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ClustalOmega_tool.py to test_ClustalOmega_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Wise.py to test_Wise.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_fasta_m10_index.py to test_SearchIO_fasta_m10_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_PhylipIO.py to test_AlignIO_PhylipIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KGML_nographics.py to test_KGML_nographics.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_FastaIO.py to test_SeqIO_FastaIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo.py to test_Phylo.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_prodoc.py to test_prodoc.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PAML_baseml.py to test_PAML_baseml.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_geo.py to test_geo.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_msf.py to test_Align_msf.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Fasttree_tool.py to test_Fasttree_tool.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_AbiIO.py to test_SeqIO_AbiIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_aligner.py to test_pairwise_aligner.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ExPASy.py to test_ExPASy.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_pairwise_alignment_map.py to test_pairwise_alignment_map.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_internal_coords.py to test_PDB_internal_coords.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Phylo_NeXML.py to test_Phylo_NeXML.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_MauveIO.py to test_AlignIO_MauveIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIF2Dict.py to test_PDB_MMCIF2Dict.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_AlignIO_ClustalIO.py to test_AlignIO_ClustalIO.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PopGen_GenePop_nodepend.py to test_PopGen_GenePop_nodepend.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_blast_text.py to test_SearchIO_blast_text.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_GraphicsBitmaps.py to test_GraphicsBitmaps.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_RCSBFormats.py to test_RCSBFormats.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_QCSuperimposer.py to test_PDB_QCSuperimposer.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SwissProt.py to test_SwissProt.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_motifs.py to test_motifs.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Medline.py to test_Medline.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/common_BioSQL.py to common_BioSQL.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Align_bed.py to test_Align_bed.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_KEGG.py to test_KEGG.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_PDB_MMCIFParser.py to test_PDB_MMCIFParser.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SCOP_online.py to test_SCOP_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Compass.py to test_Compass.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Entrez_online.py to test_Entrez_online.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SeqIO_Xdna.py to test_SeqIO_Xdna.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_SearchIO_exonerate_text_index.py to test_SearchIO_exonerate_text_index.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_Restriction.py to test_Restriction.cpython-311.pyc byte-compiling /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/Tests/test_ColorSpiral.py to test_ColorSpiral.cpython-311.pyc running install_egg_info Copying biopython.egg-info to /build/python-biopython-1.80+dfsg/debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.80.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 -ppython3-biopython mv debian/python3-biopython.substvars.new debian/python3-biopython.substvars make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' dh_install -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython//usr/lib/python3.11/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.11/dist-packages/Bio debian/tmp/usr/lib/python3.11/dist-packages/biopython-1.80.egg-info debian/python3-biopython//usr/lib/python3.11/dist-packages/ install -m0755 -d debian/python3-biopython-sql//usr/lib/python3.11/dist-packages cp --reflink=auto -a debian/tmp/usr/lib/python3.11/dist-packages/BioSQL debian/python3-biopython-sql//usr/lib/python3.11/dist-packages/ rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/python3-biopython.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/python-biopython-1.80+dfsg' dh_installdocs -i dh_installdocs: warning: Cannot auto-detect main package for python-biopython-doc. If the default is wrong, please use --doc-main-package install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './Doc/..' && find 'Doc' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.80+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/README.test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cp --reflink=auto -a ./debian/tests/run-unit-test debian/python-biopython-doc/usr/share/doc/python-biopython-doc cd './debian/Tests_fixme/..' && find 'Tests_fixme' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/python-biopython-1.80+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc chmod -R u\+rw,go=rX debian/python-biopython-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-biopython-doc/usr/share/doc/python-biopython-doc/copyright install -m0755 -d debian/python-biopython-doc/usr/share/doc-base/ install -p -m0644 debian/python-biopython-doc.doc-base debian/python-biopython-doc/usr/share/doc-base/python-biopython-doc.biopython-tutorial install -m0755 -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/copyright debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/copyright find debian -name __pycache__ -type d | xargs rm -rf find debian -name example.fastq.gz debian/tmp/usr/lib/python3.11/dist-packages/Tests/Quality/example.fastq.gz # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well cp -a debian/tmp_tests/* /build/python-biopython-1.80+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/ find debian -name .cvsignore -delete # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \ mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \ fi cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean make[2]: Entering directory '/build/python-biopython-1.80+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' grep: ../Bio/__init__.py: No such file or directory File "", line 1 ; print('dev' if 'dev' in __version__ else __version__) ^ SyntaxError: invalid syntax ( for f in ; do make clean -C $f ; done ) rm -f Tutorial.aux rm -f Tutorial.toc rm -f Tutorial.log rm -f Tutorial.out rm -f Tutorial.haux rm -f Tutorial.htoc rm -f biopdb_faq.aux rm -f biopdb_faq.log rm -f biopdb_faq.out rm -f Tutorial/*.aux make[2]: Leaving directory '/build/python-biopython-1.80+dfsg/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc' find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.lyx" -delete find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -type d -empty -delete make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' dh_installdocs -O--buildsystem=pybuild -Npython-biopython-doc -Npython3-biopython-sql install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIB.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./CONTRIBUTING.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./DEPRECATED.rst debian/python3-biopython/usr/share/doc/python3-biopython cp --reflink=auto -a ./NEWS.rst debian/python3-biopython/usr/share/doc/python3-biopython chmod -R u\+rw,go=rX debian/python3-biopython/usr/share/doc install -p -m0644 debian/README.Debian debian/python3-biopython/usr/share/doc/python3-biopython/README.Debian install -p -m0644 debian/copyright debian/python3-biopython/usr/share/doc/python3-biopython/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/doc/python3-biopython install -p -m0644 debian/.debhelper/generated/python3-biopython/dh_installchangelogs.dch.trimmed debian/python3-biopython/usr/share/doc/python3-biopython/changelog.Debian install -p -m0644 debian/NEWS debian/python3-biopython/usr/share/doc/python3-biopython/NEWS.Debian install -m0755 -d debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql install -p -m0644 debian/.debhelper/generated/python3-biopython-sql/dh_installchangelogs.dch.trimmed debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/changelog.Debian install -p -m0644 debian/NEWS debian/python3-biopython-sql/usr/share/doc/python3-biopython-sql/NEWS.Debian install -m0755 -d debian/python-biopython-doc/usr/share/doc/python-biopython-doc install -p -m0644 debian/.debhelper/generated/python-biopython-doc/dh_installchangelogs.dch.trimmed debian/python-biopython-doc/usr/share/doc/python-biopython-doc/changelog.Debian install -p -m0644 debian/NEWS debian/python-biopython-doc/usr/share/doc/python-biopython-doc/NEWS.Debian dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 5.20230130 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11 (default=3.11) D: dh_python3 debhelper:149: skipping package: python-biopython-doc D: dh_python3 debhelper:183: source=python-biopython, binary packages=['python3-biopython', 'python3-biopython-sql'] D: dh_python3 dh_python3:204: processing package python3-biopython... D: dh_python3 fs:52: moving files from debian/python3-biopython/usr/lib/python3.11/dist-packages to debian/python3-biopython/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-biopython details = {'requires.txt': {'debian/python3-biopython/usr/lib/python3/dist-packages/biopython-1.80.egg-info/requires.txt'}, 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:281: D={'python3:any', 'python3-numpy', 'python3 (<< 3.12)', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:204: processing package python3-biopython-sql... D: dh_python3 fs:52: moving files from debian/python3-biopython-sql/usr/lib/python3.11/dist-packages to debian/python3-biopython-sql/usr/lib/python3/dist-packages/ D: dh_python3 fs:400: package python3-biopython-sql details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-biopython-sql D: dh_python3 depends:281: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/share/lintian/overrides install -p -m0644 debian/python3-biopython.lintian-overrides debian/python3-biopython/usr/share/lintian/overrides/python3-biopython install -m0755 -d debian/python-biopython-doc/usr/share/lintian/overrides install -p -m0644 debian/python-biopython-doc.lintian-overrides debian/python-biopython-doc/usr/share/lintian/overrides/python-biopython-doc dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs rm -f debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd ln -s ../../../../../../share/xml/w3c-sgml-lib/schema/dtd/XX-MathML2-20031104/mathml2.dtd debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd dh_strip_nondeterminism -O--buildsystem=pybuild Using 1672320127 as canonical time Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-rooted.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/simple_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-simple-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot_scatter.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-draw-example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/PSIBlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigils.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_m.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/hist_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_labels.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular_nice.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/examples/ls_orchid.gbk.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/gc_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_white.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_shafts.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/dot_plot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/SRR001666.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color-draw.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/BlastRecord.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_linear.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_xs.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/GD_sigil_arrow_heads.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/smcra.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf-zoom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_simple.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/three_track_cl2a.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-color.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-apaf.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/plasmid_circular.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/phylo-dot.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_s.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/biopython_logo_l.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc/images/tRNA_chrom.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Roche/E3MFGYR02_random_10_reads.sff.gz using File::StripNondeterminism::handlers::gzip Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map01100.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/KEGG/map03070.png using File::StripNondeterminism::handlers::png Normalizing debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Tests/Fasta/flowers.pro.gz using File::StripNondeterminism::handlers::gzip dh_compress -O--buildsystem=pybuild cd debian/python3-biopython cd debian/python-biopython-doc cd debian/python3-biopython-sql chmod a-x usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian gzip -9nf usr/share/doc/python3-biopython/CONTRIB.rst usr/share/doc/python3-biopython/DEPRECATED.rst usr/share/doc/python3-biopython/NEWS.Debian usr/share/doc/python3-biopython/NEWS.rst usr/share/doc/python3-biopython/changelog.Debian chmod a-x usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian gzip -9nf usr/share/doc/python3-biopython-sql/NEWS.Debian usr/share/doc/python3-biopython-sql/changelog.Debian cd '/build/python-biopython-1.80+dfsg' cd '/build/python-biopython-1.80+dfsg' chmod a-x usr/share/doc/python-biopython-doc/Doc/Tutorial.pdf usr/share/doc/python-biopython-doc/Doc/Tutorial.tex usr/share/doc/python-biopython-doc/Doc/Tutorial.txt usr/share/doc/python-biopython-doc/Doc/Tutorial/chapter_align.tex 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usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blast_xml_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_blat_psl.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_exonerate.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_fasta_m10.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hhsuite2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer2_text_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_domtab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_tab_index.py usr/share/doc/python-biopython-doc/Tests/test_SearchIO_hmmer3_text.py 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usr/share/doc/python-biopython-doc/Tests/test_align_substitution_matrices.py usr/share/doc/python-biopython-doc/Tests/test_bgzf.py usr/share/doc/python-biopython-doc/Tests/test_cellosaurus.py usr/share/doc/python-biopython-doc/Tests/test_codonalign.py usr/share/doc/python-biopython-doc/Tests/test_geo.py usr/share/doc/python-biopython-doc/Tests/test_motifs.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_aligner.py usr/share/doc/python-biopython-doc/Tests/test_pairwise_alignment_map.py usr/share/doc/python-biopython-doc/Tests/test_phenotype.py usr/share/doc/python-biopython-doc/Tests/test_prodoc.py usr/share/doc/python-biopython-doc/Tests/test_prosite.py usr/share/doc/python-biopython-doc/Tests/test_samtools_tool.py usr/share/doc/python-biopython-doc/Tests/test_seq.py usr/share/doc/python-biopython-doc/Tests_avoid/test_EmbossPhylipNew.py usr/share/doc/python-biopython-doc/Tests_avoid/test_MSAProbs_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PAML_tools.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PDB_ResidueDepth.py usr/share/doc/python-biopython-doc/Tests_avoid/test_PopGen_GenePop_EasyController.py usr/share/doc/python-biopython-doc/Tests_avoid/test_XXmotif_tool.py usr/share/doc/python-biopython-doc/Tests_avoid/test_mmtf.py usr/share/doc/python-biopython-doc/changelog.Debian cd '/build/python-biopython-1.80+dfsg' rm -f debian/python-biopython-doc.debhelper.log debian/python3-biopython-sql.debhelper.log debian/rules override_dh_fixperms make[1]: Entering directory '/build/python-biopython-1.80+dfsg' dh_fixperms find debian/python3-biopython ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-biopython-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-biopython-sql/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython-sql/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-biopython/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-biopython-sql -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython-sql/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-biopython -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-biopython-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-biopython/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python-biopython-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-biopython-doc/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-biopython-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian -name "*.dtd" -exec chmod -x \{\} \; chmod: cannot operate on dangling symlink 'debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Entrez/DTDs/mathml2.dtd' make[1]: Leaving directory '/build/python-biopython-1.80+dfsg' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug -- debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so objcopy --compress-debug-sections debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug chmod 0644 -- debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-biopython.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/e3f5488fbfff2237152e1952259943c9abf238.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/e3f5488fbfff2237152e1952259943c9abf238.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/ad/e3f5488fbfff2237152e1952259943c9abf238.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6a/5e69c5f7f8b4e0904837de992ce6f5ed0713fb.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6a/5e69c5f7f8b4e0904837de992ce6f5ed0713fb.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/6a/5e69c5f7f8b4e0904837de992ce6f5ed0713fb.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/54/0d0320f5f04390ec122796de35638445bfcd51.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/54/0d0320f5f04390ec122796de35638445bfcd51.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/54/0d0320f5f04390ec122796de35638445bfcd51.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/55d4e21aa2432ef74172ffbbe914820d4d3205.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/55d4e21aa2432ef74172ffbbe914820d4d3205.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/a4/55d4e21aa2432ef74172ffbbe914820d4d3205.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/90610afccf8fdd66ce6bf9b89039d92152be52.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/90610afccf8fdd66ce6bf9b89039d92152be52.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/33/90610afccf8fdd66ce6bf9b89039d92152be52.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c2/8e45bd3080da17c2e56938420bd5764551b872.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c2/8e45bd3080da17c2e56938420bd5764551b872.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/c2/8e45bd3080da17c2e56938420bd5764551b872.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/fe64ef4b43a14ddb56268162b1ab53363b1ca8.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/fe64ef4b43a14ddb56268162b1ab53363b1ca8.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/88/fe64ef4b43a14ddb56268162b1ab53363b1ca8.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d6 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d6/e1194af00c9ab52924970f76563ad2cf46ad04.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d6/e1194af00c9ab52924970f76563ad2cf46ad04.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/d6/e1194af00c9ab52924970f76563ad2cf46ad04.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/95b62fcdb58cb5de80c67c6f612d501140a16f.debug chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/95b62fcdb58cb5de80c67c6f612d501140a16f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.build-id/24/95b62fcdb58cb5de80c67c6f612d501140a16f.debug debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-biopython/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-biopython/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-biopython/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-biopython/usr/lib/debug install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc ln -s python3-biopython debian/.debhelper/python3-biopython/dbgsym-root/usr/share/doc/python3-biopython-dbgsym install -m0755 -d debian/.debhelper/python3-biopython dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-biopython/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN dpkg-shlibdeps -Tdebian/python3-biopython.substvars debian/python3-biopython/usr/lib/python3/dist-packages/Bio/cpairwise2.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/motifs/_pwm.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/SeqIO/_twoBitIO.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Cluster/_cluster.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Align/_aligners.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/ccealign.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/kdtrees.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/PDB/QCPSuperimposer/qcprotmodule.cpython-311-arm-linux-gnueabihf.so debian/python3-biopython/usr/lib/python3/dist-packages/Bio/Nexus/cnexus.cpython-311-arm-linux-gnueabihf.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/postinst cat debian/python3-biopython.postinst.debhelper >> debian/python3-biopython/DEBIAN/postinst chmod 0755 -- debian/python3-biopython/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython/DEBIAN/prerm cat debian/python3-biopython.prerm.debhelper >> debian/python3-biopython/DEBIAN/prerm chmod 0755 -- debian/python3-biopython/DEBIAN/prerm install -m0755 -d debian/python-biopython-doc/DEBIAN install -m0755 -d debian/python3-biopython-sql/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/postinst cat debian/python3-biopython-sql.postinst.debhelper >> debian/python3-biopython-sql/DEBIAN/postinst chmod 0755 -- debian/python3-biopython-sql/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-biopython-sql/DEBIAN/prerm cat debian/python3-biopython-sql.prerm.debhelper >> debian/python3-biopython-sql/DEBIAN/prerm chmod 0755 -- debian/python3-biopython-sql/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-biopython/DEBIAN echo misc:Depends= >> debian/python3-biopython.substvars echo misc:Pre-Depends= >> debian/python3-biopython.substvars install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/.debhelper/python3-biopython/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-biopython-dbgsym "-DDepends=python3-biopython (= \${binary:Version})" "-DDescription=debug symbols for python3-biopython" "-DBuild-Ids=2495b62fcdb58cb5de80c67c6f612d501140a16f 3390610afccf8fdd66ce6bf9b89039d92152be52 540d0320f5f04390ec122796de35638445bfcd51 6a5e69c5f7f8b4e0904837de992ce6f5ed0713fb 88fe64ef4b43a14ddb56268162b1ab53363b1ca8 a455d4e21aa2432ef74172ffbbe914820d4d3205 ade3f5488fbfff2237152e1952259943c9abf238 c28e45bd3080da17c2e56938420bd5764551b872 d6e1194af00c9ab52924970f76563ad2cf46ad04" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/python-biopython-doc/DEBIAN echo misc:Depends= >> debian/python-biopython-doc.substvars echo misc:Pre-Depends= >> debian/python-biopython-doc.substvars dpkg-gencontrol -ppython-biopython-doc -ldebian/changelog -Tdebian/python-biopython-doc.substvars -Pdebian/python-biopython-doc install -m0755 -d debian/python3-biopython-sql/DEBIAN echo misc:Depends= >> debian/python3-biopython-sql.substvars echo misc:Pre-Depends= >> debian/python3-biopython-sql.substvars dpkg-gencontrol -ppython3-biopython-sql -ldebian/changelog -Tdebian/python3-biopython-sql.substvars -Pdebian/python3-biopython-sql dpkg-gencontrol: warning: Provides field of package python3-biopython-sql: substitution variable ${python3:Provides} used, but is not defined chmod 0644 -- debian/python3-biopython-sql/DEBIAN/control chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-biopython -ldebian/changelog -Tdebian/python3-biopython.substvars -Pdebian/python3-biopython chmod 0644 -- debian/python-biopython-doc/DEBIAN/control chmod 0644 -- debian/python3-biopython/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python-biopython-doc/DEBIAN install -m0755 -d debian/python3-biopython/DEBIAN install -m0755 -d debian/python3-biopython-sql/DEBIAN cd debian/python3-biopython >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-biopython-sql >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python-biopython-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-biopython-sql/DEBIAN/md5sums chmod 0644 -- debian/python3-biopython/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN cd debian/.debhelper/python3-biopython/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-biopython/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/python-biopython-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-biopython .. dpkg-deb --root-owner-group --build debian/python-biopython-doc .. dpkg-deb: building package 'python-biopython-doc' in '../python-biopython-doc_1.80+dfsg-4_all.deb'. dpkg-deb: building package 'python3-biopython' in '../python3-biopython_1.80+dfsg-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/python3-biopython/dbgsym-root .. dpkg-deb: building package 'python3-biopython-dbgsym' in '../python3-biopython-dbgsym_1.80+dfsg-4_armhf.deb'. dpkg-deb --root-owner-group --build debian/python3-biopython-sql .. dpkg-deb: building package 'python3-biopython-sql' in '../python3-biopython-sql_1.80+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-biopython_1.80+dfsg-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-biopython_1.80+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6774 and its subdirectories I: Current time: Wed May 10 07:06:32 -12 2023 I: pbuilder-time-stamp: 1683745592 Wed May 10 19:07:44 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Wed May 10 19:07:44 UTC 2023 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Wed May 10 20:22:28 UTC 2023 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Wed May 10 20:22:31 UTC 2023 I: python-biopython_1.80+dfsg-4_armhf.changes: Format: 1.8 Date: Thu, 29 Dec 2022 18:52:07 +0530 Source: python-biopython Binary: python-biopython-doc python3-biopython python3-biopython-dbgsym python3-biopython-sql Architecture: all armhf Version: 1.80+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python-biopython-doc - Documentation for the Biopython library python3-biopython - Python3 library for bioinformatics python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Closes: 1027253 Changes: python-biopython (1.80+dfsg-4) unstable; urgency=medium . * Team Upload. * Cherry-pick upstream patch to fix problems with numpy 1.24 (Closes: #1027253) Checksums-Sha1: 80c6c98383190e0b5fd99b0618975503239bc347 16141716 python-biopython-doc_1.80+dfsg-4_all.deb a3da9803185fef2081862c47b93e4713dab38aeb 13202 python-biopython_1.80+dfsg-4_armhf.buildinfo 1d0761edfd5fdb9ef0799bdb9b07de0cfd1f52a6 284544 python3-biopython-dbgsym_1.80+dfsg-4_armhf.deb 1ce8dacfa5592676576ff5ce70da1dc8b9d9df0c 29808 python3-biopython-sql_1.80+dfsg-4_all.deb 0cd5792a360a5bb05a2c48d66f4518c70595c420 1568012 python3-biopython_1.80+dfsg-4_armhf.deb Checksums-Sha256: 8e61b5e369a723549e462012bcca81757c39dbb8db10ca8116acba795ac5afa3 16141716 python-biopython-doc_1.80+dfsg-4_all.deb 0b2a20c4f1480ba7821076ccb08a9e19e58b05e67b063b7daade3415bc430bc4 13202 python-biopython_1.80+dfsg-4_armhf.buildinfo e3c889583e5f5996117d438b3625ad7a69d3bda133cfb7c2e16ebb21549e53ed 284544 python3-biopython-dbgsym_1.80+dfsg-4_armhf.deb a544719ef3d768f90c350f354728e7d2a39369f71b3557c31381d46b5e8be94d 29808 python3-biopython-sql_1.80+dfsg-4_all.deb eb4640dbfd5cf47eb71200c50601871f055367755077cf272869b5dba04026cf 1568012 python3-biopython_1.80+dfsg-4_armhf.deb Files: 00ee043493e9af8ad927d125a324695e 16141716 doc optional python-biopython-doc_1.80+dfsg-4_all.deb dd7e8eef48f2ef4f697240c5acb50cc8 13202 python optional python-biopython_1.80+dfsg-4_armhf.buildinfo 5d95f206f6f7c1554a226f58226f378a 284544 debug optional python3-biopython-dbgsym_1.80+dfsg-4_armhf.deb 67b6acfa4a7f41d537d39292c4d450a9 29808 python optional python3-biopython-sql_1.80+dfsg-4_all.deb 2735364d8df55020cb18938e0f0f06f2 1568012 python optional python3-biopython_1.80+dfsg-4_armhf.deb Wed May 10 20:22:33 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/python-biopython_1.80+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/python-biopython_1.80+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/python-biopython_1.80+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/b1/python-biopython_1.80+dfsg-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.bE3k29Jy/b2/python-biopython_1.80+dfsg-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.597s) 0.597s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.234s) 0.233s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed May 10 20:22:34 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed May 10 20:22:34 UTC 2023 I: python-biopython from bookworm built successfully and reproducibly on armhf. Wed May 10 20:22:35 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 10 20:22:35 UTC 2023 I: Submitting 16K b1/python-biopython_1.80+dfsg-4_armhf.buildinfo.asc Wed May 10 20:22:36 UTC 2023 I: Submitting 16K b2/python-biopython_1.80+dfsg-4_armhf.buildinfo.asc Wed May 10 20:22:37 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 10 20:22:37 UTC 2023 I: Done submitting .buildinfo files. Wed May 10 20:22:37 UTC 2023 I: Removing signed python-biopython_1.80+dfsg-4_armhf.buildinfo.asc files: removed './b1/python-biopython_1.80+dfsg-4_armhf.buildinfo.asc' removed './b2/python-biopython_1.80+dfsg-4_armhf.buildinfo.asc'