Sun Jun 11 20:25:39 UTC 2023 I: starting to build python-prodigy/bookworm/armhf on jenkins on '2023-06-11 20:25' Sun Jun 11 20:25:39 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_22/1428/console.log Sun Jun 11 20:25:39 UTC 2023 I: Downloading source for bookworm/python-prodigy=2.1.2-1 --2023-06-11 20:25:39-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-prodigy/python-prodigy_2.1.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2207 (2.2K) [text/prs.lines.tag] Saving to: ‘python-prodigy_2.1.2-1.dsc’ 0K .. 100% 135M=0s 2023-06-11 20:25:39 (135 MB/s) - ‘python-prodigy_2.1.2-1.dsc’ saved [2207/2207] Sun Jun 11 20:25:39 UTC 2023 I: python-prodigy_2.1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-prodigy Binary: python3-prodigy Architecture: all Version: 2.1.2-1 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://github.com/haddocking/prodigy Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-prodigy Vcs-Git: https://salsa.debian.org/python-team/packages/python-prodigy.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), help2man, pybuild-plugin-pyproject, python3-all, python3-biopython , python3-freesasa , python3-numpy , python3-poetry-core Package-List: python3-prodigy deb science optional arch=all Checksums-Sha1: f93998c31e9203d7101addba9110d3471874c7ad 5714707 python-prodigy_2.1.2.orig.tar.gz 0177fc2d0eccd460706ad4757cb2f721f4e8b60b 1780 python-prodigy_2.1.2-1.debian.tar.xz Checksums-Sha256: 886ffd81a72b6a83e7bc898510df069c08f66793707442521f008dff530d1405 5714707 python-prodigy_2.1.2.orig.tar.gz 12c6ea76755188a7b6a67e1075709f87777f4abd0eeb52954964804254e56df8 1780 python-prodigy_2.1.2-1.debian.tar.xz Files: c6f25871b91f1dbf6f00bd3bddbb88b2 5714707 python-prodigy_2.1.2.orig.tar.gz 6f8b4e68a18e11cbd9f75c2362741191 1780 python-prodigy_2.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmPjY2cSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH7asP/jrhQJKKFwsgQZ5iZJ+qp030a9r4zCom 3pd/MGXPRAPoFkSb/ahbESwgpHIrWW8DRkI+2P2UI0v4bhHcUJBx98Gs6K7lU3NN mV8UEc+MEivoGNGLDoU3BMoatvs3uw9eyohU2C0AlK3Y6a9m8YwcTxfoI76ZVHMP EkyEylF7NjuUmbtlCOgKVjqDttOwq8WcLzmBajHNjomSDSNoRcQHSTOgklOP1sUM M4jmNzFkW66nSWReilJge9PB1gLaueJSFpyCgg45sS1JrHcoQwBANyIl1fEVnFnJ GNMRjKPAtycyi6+Zg3vSJIzhNv4958Aqd3OiiOmW40c6zFwdHB2I87+Jl/RvV6Kn kfREabKXErXgEO6WGZcxTtee65r3q9vZRzSTz3hXGfw+xzV+nbTfqw0txohBcjhW QWH9miqTho2Vr/BXNfwZpq2AGGYl6+ISsM35kLRrMOe/wDWBzFEh3MCUuV7hVlWP Bne5VcUFHI4HVKU4Zt5Ce00iTNVMEfmvIo36RE+8XAYBRKtzdbitt498Ev+iT4/o SVAbkyJ90jcKQYEgcmOBBH7FuYACh+Jg4eVjbqTrZNRWHsCAmGzdgKRxLjcOuWz5 Qa7F095k7CTPKh/TQl3/wn/gxteh2QZe785SPVZe2b8tcEiCqi77dxTX2FY7/XHS NkN+ruQtzRNv =D7Na -----END PGP SIGNATURE----- Sun Jun 11 20:25:39 UTC 2023 I: Checking whether the package is not for us Sun Jun 11 20:25:39 UTC 2023 I: Starting 1st build on remote node cbxi4b-armhf-rb.debian.net. Sun Jun 11 20:25:39 UTC 2023 I: Preparing to do remote build '1' on cbxi4b-armhf-rb.debian.net. Sun Jun 11 20:44:42 UTC 2023 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 11 08:25:50 -12 2023 I: pbuilder-time-stamp: 1686515150 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-prodigy_2.1.2-1.dsc] I: copying [./python-prodigy_2.1.2.orig.tar.gz] I: copying [./python-prodigy_2.1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Feb 7 20:55:03 2023 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-prodigy_2.1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting python-prodigy in python-prodigy-2.1.2 dpkg-source: info: unpacking python-prodigy_2.1.2.orig.tar.gz dpkg-source: info: unpacking python-prodigy_2.1.2-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='f052dad150cb4848a63d4ced64094add' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14943' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/pbuilderrc_mPQy --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/b1 --logfile b1/build.log python-prodigy_2.1.2-1.dsc' SUDO_GID='116' SUDO_UID='112' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4b 5.10.0-23-armmp #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/14943/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man, pybuild-plugin-pyproject, python3-all, python3-biopython, python3-freesasa, python3-numpy, python3-poetry-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-freesasa; however: Package python3-freesasa is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-poetry-core; however: Package python3-poetry-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjson-c5{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-biopython{a} python3-build{a} python3-distutils{a} python3-freesasa{a} python3-importlib-metadata{a} python3-installer{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pep517{a} python3-pil{a} python3-pkg-resources{a} python3-poetry-core{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-toml{a} python3-tomli{a} python3-wheel{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 51.6 MB of archives. After unpacking 170 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf liblocale-gettext-perl armhf 1.07-5 [14.9 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf libpython3.11-minimal armhf 3.11.2-6 [798 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf python3.11-minimal armhf 3.11.2-6 [1714 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf python3-minimal armhf 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf mailcap all 3.70+nmu1 [32.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf mime-support all 3.66 [10.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1678 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf python3.11 armhf 3.11.2-6 [572 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf libpython3-stdlib armhf 3.11.2-1+b1 [9296 B] Get: 14 http://deb.debian.org/debian bookworm/main armhf python3 armhf 3.11.2-1+b1 [26.3 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 36 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf python3-distutils all 3.11.2-3 [131 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf dh-python all 5.20230130 [104 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libfontenc1 armhf 1:1.1.4-1 [21.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 57 http://deb.debian.org/debian bookworm/main armhf help2man armhf 1.49.3 [198 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf libimagequant0 armhf 2.17.0-1 [27.9 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libjson-c5 armhf 0.16-2 [40.4 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf liblcms2-2 armhf 2.14-2 [125 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf libopenjp2-7 armhf 2.5.0-2 [169 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libraqm0 armhf 0.7.0-4.1 [9116 B] Get: 75 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libwebpdemux2 armhf 1.2.4-0.2 [98.3 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libwebpmux3 armhf 1.2.4-0.2 [106 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf python3-zipp all 1.0.0-6 [6696 B] Get: 84 http://deb.debian.org/debian bookworm/main armhf python3-importlib-metadata all 4.12.0-1 [24.9 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf python3-packaging all 23.0-1 [32.5 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf python3-tomli all 2.0.1-2 [17.9 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf python3-pep517 all 0.13.0-2 [17.4 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf python3-toml all 0.10.2-1 [16.2 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf python3-wheel all 0.38.4-2 [30.8 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf python3-build all 0.9.0-1 [20.7 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf python3-installer all 0.6.0+dfsg1-1 [18.1 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf pybuild-plugin-pyproject all 5.20230130 [9092 B] Get: 93 http://deb.debian.org/debian bookworm/main armhf python3-all armhf 3.11.2-1+b1 [1060 B] Get: 94 http://deb.debian.org/debian bookworm/main armhf python3-pkg-resources all 66.1.1-1 [296 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf python3-numpy armhf 1:1.24.2-1 [4165 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf python3-renderpm armhf 3.6.12-1+b1 [66.2 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf python3-reportlab-accel armhf 3.6.12-1+b1 [37.3 kB] Get: 98 http://deb.debian.org/debian bookworm/main armhf python3-pil armhf 9.4.0-1.1+b1 [438 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf python3-reportlab all 3.6.12-1 [564 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf xml-core all 0.18+nmu1 [23.8 kB] Get: 101 http://deb.debian.org/debian bookworm/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf python3-biopython armhf 1.80+dfsg-4+b1 [1568 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf python3-freesasa armhf 2.1.0-3+b1 [108 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf python3-poetry-core all 1.4.0-4 [377 kB] Fetched 51.6 MB in 7s (7239 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.2-6) ... Selecting previously unselected package libexpat1:armhf. 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Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20112 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.2-1+b1_armhf.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../04-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. 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Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../24-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../26-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../32-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../33-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../34-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../35-libfontenc1_1%3a1.1.4-1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../36-libbrotli1_1.0.9-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../37-libpng16-16_1.6.39-2_armhf.deb ... Unpacking libpng16-16:armhf (1.6.39-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../38-libfreetype6_2.12.1+dfsg-5_armhf.deb ... Unpacking libfreetype6:armhf (2.12.1+dfsg-5) ... Selecting previously unselected package x11-common. Preparing to unpack .../39-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../40-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../41-xfonts-utils_1%3a7.7+6_armhf.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../42-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package help2man. Preparing to unpack .../43-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../44-libblas3_3.11.0-2_armhf.deb ... Unpacking libblas3:armhf (3.11.0-2) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../45-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../46-libdeflate0_1.14-1_armhf.deb ... Unpacking libdeflate0:armhf (1.14-1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../47-libfribidi0_1.0.8-2.1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.8-2.1) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../48-libgfortran5_12.2.0-14_armhf.deb ... Unpacking libgfortran5:armhf (12.2.0-14) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../49-libglib2.0-0_2.74.6-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../50-libgraphite2-3_1.3.14-1_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../51-libharfbuzz0b_6.0.0+dfsg-3_armhf.deb ... Unpacking libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Selecting previously unselected package libimagequant0:armhf. Preparing to unpack .../52-libimagequant0_2.17.0-1_armhf.deb ... Unpacking libimagequant0:armhf (2.17.0-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../53-libjbig0_2.1-6.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../54-libjpeg62-turbo_1%3a2.1.5-2_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-2) ... Selecting previously unselected package libjson-c5:armhf. Preparing to unpack .../55-libjson-c5_0.16-2_armhf.deb ... Unpacking libjson-c5:armhf (0.16-2) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../56-liblapack3_3.11.0-2_armhf.deb ... Unpacking liblapack3:armhf (3.11.0-2) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../57-liblcms2-2_2.14-2_armhf.deb ... Unpacking liblcms2-2:armhf (2.14-2) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../58-liblerc4_4.0.0+ds-2_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-2) ... Selecting previously unselected package libopenjp2-7:armhf. Preparing to unpack .../59-libopenjp2-7_2.5.0-2_armhf.deb ... Unpacking libopenjp2-7:armhf (2.5.0-2) ... Selecting previously unselected package libraqm0:armhf. Preparing to unpack .../60-libraqm0_0.7.0-4.1_armhf.deb ... Unpacking libraqm0:armhf (0.7.0-4.1) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../61-libwebp7_1.2.4-0.2_armhf.deb ... Unpacking libwebp7:armhf (1.2.4-0.2) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../62-libtiff6_4.5.0-6_armhf.deb ... Unpacking libtiff6:armhf (4.5.0-6) ... Selecting previously unselected package libwebpdemux2:armhf. Preparing to unpack .../63-libwebpdemux2_1.2.4-0.2_armhf.deb ... 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Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up libfontenc1:armhf (1:1.1.4-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libimagequant0:armhf (2.17.0-1) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.2.4-0.2) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:armhf (4.5.0-6) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libopenjp2-7:armhf (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:armhf (1.2.4-0.2) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libjson-c5:armhf (0.16-2) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:armhf (1.2.4-0.2) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.2-6) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:armhf (0.7.0-4.1) ... Setting up libpython3-stdlib:armhf (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-pil:armhf (9.4.0-1.1+b1) ... Setting up python3-freesasa (2.1.0-3+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-poetry-core (1.4.0-4) ... Setting up python3-reportlab-accel:armhf (3.6.12-1+b1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.6.0+dfsg1-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-renderpm:armhf (3.6.12-1+b1) ... Setting up python3-tomli (2.0.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-zipp (1.0.0-6) ... Setting up python3-wheel (0.38.4-2) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-importlib-metadata (4.12.0-1) ... Setting up python3-pep517 (0.13.0-2) ... Setting up python3-build (0.9.0-1) ... Setting up pybuild-plugin-pyproject (5.20230130) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-prodigy-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-prodigy_2.1.2-1_source.changes dpkg-buildpackage: info: source package python-prodigy dpkg-buildpackage: info: source version 2.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem pybuild --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-prodigy-2.1.2' dh_auto_clean rm -rf prodigy.egg-info make[1]: Leaving directory '/build/python-prodigy-2.1.2' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild --with python3 dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:107: Building wheel for python3.11 with "build" module I: pybuild base:240: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/python-prodigy-2.1.2/.pybuild/cpython3_3.11_prodigy * Building wheel... Successfully built prodigy-2.1.2-py3-none-any.whl I: pybuild plugin_pyproject:119: Unpacking wheel built for python3.11 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-prodigy-2.1.2/.pybuild/cpython3_3.11_prodigy/build; python3.11 -m unittest discover -v test_dataset (tests.test_prodigy.ProdigyOutputTest.test_dataset) Test method to compare prediction for 80 dataset cases with ... ok ---------------------------------------------------------------------- Ran 1 test in 377.258s OK Deltas: ba_val max: 1.03% ba_val mean: 0.29% nis_a max: 0.53% nis_a mean: 0.02% nis_c max: 0.44% nis_c mean: 0.02% create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-prodigy/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:161: Copying package built for python3.11 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/python-prodigy-2.1.2' PYTHONPATH=. help2man debian/python3-prodigy/usr/bin/prodigy --no-info \ --name 'binding affinity predictor' > prodigy.1 dh_installman prodigy.1 make[1]: Leaving directory '/build/python-prodigy-2.1.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-prodigy' in '../python3-prodigy_2.1.2-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-prodigy_2.1.2-1_armhf.buildinfo dpkg-genchanges --build=binary -O../python-prodigy_2.1.2-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14943 and its subdirectories I: Current time: Sun Jun 11 08:43:58 -12 2023 I: pbuilder-time-stamp: 1686516238 Sun Jun 11 20:44:46 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Sun Jun 11 20:44:46 UTC 2023 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Sun Jun 11 20:50:59 UTC 2023 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Sun Jun 11 20:51:01 UTC 2023 I: python-prodigy_2.1.2-1_armhf.changes: Format: 1.8 Date: Wed, 08 Feb 2023 03:53:59 -0500 Source: python-prodigy Binary: python3-prodigy Architecture: all Version: 2.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Andrius Merkys Description: python3-prodigy - Protein Binding Affinity Prediction (Python 3) Changes: python-prodigy (2.1.2-1) unstable; urgency=medium . * New upstream version 2.1.2 * Update standards version to 4.6.2, no changes needed. * Add missing build-dependency on python3-poetry-core. * Build with pybuild-plugin-pyproject. Checksums-Sha1: c2bd22233f2f6bfa289b885641852e2e3872d3c1 6964 python-prodigy_2.1.2-1_armhf.buildinfo 96def52218808e759b795ef7443556bce3694349 15596 python3-prodigy_2.1.2-1_all.deb Checksums-Sha256: d8bac7f4cb6fa3c433bfd3753f3f85556c3cb29f72c31e257fa24833774b25f6 6964 python-prodigy_2.1.2-1_armhf.buildinfo 8a2955e71714395b428ac5c72b9fc7006987cd1d37be43c5dd5166fa507d1d53 15596 python3-prodigy_2.1.2-1_all.deb Files: 343c1c79546aa23b7d041c0a46e542cb 6964 science optional python-prodigy_2.1.2-1_armhf.buildinfo 1269532bd6eefc86b2c5989c3a03e271 15596 science optional python3-prodigy_2.1.2-1_all.deb Sun Jun 11 20:51:02 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/python-prodigy_2.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/python-prodigy_2.1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/python-prodigy_2.1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/b1/python-prodigy_2.1.2-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.5K4bPNby/b2/python-prodigy_2.1.2-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.315s) 0.315s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.013s) 0.013s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Jun 11 20:51:04 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Sun Jun 11 20:51:04 UTC 2023 I: python-prodigy from bookworm built successfully and reproducibly on armhf. Sun Jun 11 20:51:04 UTC 2023 I: Submitting .buildinfo files to external archives: Sun Jun 11 20:51:04 UTC 2023 I: Submitting 8.0K b1/python-prodigy_2.1.2-1_armhf.buildinfo.asc Sun Jun 11 20:51:06 UTC 2023 I: Submitting 8.0K b2/python-prodigy_2.1.2-1_armhf.buildinfo.asc Sun Jun 11 20:51:07 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jun 11 20:51:07 UTC 2023 I: Done submitting .buildinfo files. Sun Jun 11 20:51:07 UTC 2023 I: Removing signed python-prodigy_2.1.2-1_armhf.buildinfo.asc files: removed './b1/python-prodigy_2.1.2-1_armhf.buildinfo.asc' removed './b2/python-prodigy_2.1.2-1_armhf.buildinfo.asc'