Wed Jun 7 13:51:33 UTC 2023 I: starting to build r-bioc-fmcsr/bookworm/armhf on jenkins on '2023-06-07 13:51' Wed Jun 7 13:51:33 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_17/1515/console.log Wed Jun 7 13:51:34 UTC 2023 I: Downloading source for bookworm/r-bioc-fmcsr=1.40.0+dfsg-1 --2023-06-07 13:51:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-fmcsr/r-bioc-fmcsr_1.40.0%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2121 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-fmcsr_1.40.0+dfsg-1.dsc’ 0K .. 100% 13.9M=0s 2023-06-07 13:51:34 (13.9 MB/s) - ‘r-bioc-fmcsr_1.40.0+dfsg-1.dsc’ saved [2121/2121] Wed Jun 7 13:51:34 UTC 2023 I: r-bioc-fmcsr_1.40.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-fmcsr Binary: r-bioc-fmcsr Architecture: any Version: 1.40.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/fmcsR/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-fmcsr.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics Package-List: r-bioc-fmcsr deb gnu-r optional arch=any Checksums-Sha1: 932053cf79eb9f715b198b115cd0c952fc0a37e9 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz 1cc5eaa17b5b4d6593a45fb2b4994ce5e5880455 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz Checksums-Sha256: 1b12a30639f0e2e3c1d5a9020f8d86880473862573954dadc6e5a44c00d64638 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz e6d187b008c6c29bceedc334aba5d7c4e750c915278531ea774892c2ba8300a6 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz Files: b883904a014c7ab57d12a9de7118d35d 65288 r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz 138ff4dcc07721aac2215047b672b91d 5920 r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN6UdIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEZtw/9G06KrHOwoi2gQcdFdrzmJ2Zk1nxGBoIH 04THsV0vmmoukxU+7Zz51Mq6ZzcDhKeFqIL7vrkfsqaTbO0ULtC59nq2ka6S+gaa EvteSBg+y478+nKkGHHJl2g4XnLAHgRca9KY9MrqwZgVsaSvTwPu2aaCA2MTXf/I rLHVQqqbBEwhtPfVPU0tyO757ycQXc+Rls2Eha5R1kgg7UEoLhtYVrqnBQp8QQtQ n//VHMtSpmE3w3Ozn2LB7cPqqiM2sNSX4WWvkKpNDqYpWD0HlN0RwMY+mpyZISBD 8eiTgirpwfY5eZexd4gUNfLYoxy4dEAd15S9aIzGXHXgPV3w4clpjtuQb8sXMz/x hk6PSE5eg1z431bPFONYH9zHdR3MPh+h1OKi1bVMLgi5z8K6xh3fawK9jCNvfja2 eTLMUVpc6c+kvbOP1f96nAfghyOsVamSvIV2DcOYk9SADr/oQPj0FU3nolUgpqsp J+JhfurRu3quCEaIrLraOIK9UkRUeq3i5TlxK1y4CGJ29MhNLZpwlHU6f8Etx+XW RGzqKUSJLT0By5LICMSC5CrkR7Rdead9Mye3mhCfPwMmKcGG+bYHnMIBTf6QD94P gHy3CdMHuMpxSh/hvTL4p4gJSGAjgzan2Pd9eB/psxGE9HqnjWJudgA81Fqhi2J2 tJPWJgjhqx0= =hG5T -----END PGP SIGNATURE----- Wed Jun 7 13:51:34 UTC 2023 I: Checking whether the package is not for us Wed Jun 7 13:51:34 UTC 2023 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Wed Jun 7 13:51:34 UTC 2023 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Wed Jun 7 14:02:08 UTC 2023 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 7 01:51:45 -12 2023 I: pbuilder-time-stamp: 1686145905 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-fmcsr_1.40.0+dfsg-1.dsc] I: copying [./r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz] I: copying [./r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Nov 20 04:12:02 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-fmcsr_1.40.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-fmcsr in r-bioc-fmcsr-1.40.0+dfsg dpkg-source: info: unpacking r-bioc-fmcsr_1.40.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-fmcsr_1.40.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1764/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1ff0f45c29ea4a099c38f12068613ca9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1764' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/pbuilderrc_gLI2 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/b1 --logfile b1/build.log r-bioc-fmcsr_1.40.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 5.10.0-23-armmp-lpae #1 SMP Debian 5.10.179-1 (2023-05-12) armv7l GNU/Linux I: ls -l /bin total 5072 -rwxr-xr-x 1 root root 838488 Apr 23 09:24 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 01:20 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 21:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 21:02 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 20:15 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 21:51 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 21:02 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 21:02 more -rwsr-xr-x 1 root root 38496 Mar 22 21:02 mount -rwxr-xr-x 1 root root 9824 Mar 22 21:02 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 67400 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 21:02 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Apr 6 02:25 tar -rwxr-xr-x 1 root root 67144 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 20:15 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 21:02 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 21:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1764/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-chemminer, r-cran-runit, r-bioc-biocgenerics dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-chemminer; however: Package r-bioc-chemminer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-runit; however: Package r-cran-runit is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo-gobject2{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-datatables-extensions{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.3-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcre3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} libregexp-ipv6-perl{a} librsvg2-2{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-chemminer{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-dbi{a} r-cran-digest{a} r-cran-dt{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsvg{a} r-cran-runit{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} shared-mime-info{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools librsvg2-common libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-bit64 r-cran-codetools r-cran-covr r-cran-curl r-cran-data.table r-cran-dplyr r-cran-dygraphs r-cran-formattable r-cran-future r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-interp r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-maptools r-cran-markdown r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-rsconnect r-cran-rsqlite r-cran-sf r-cran-sp r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tikzdevice r-cran-tufte r-cran-vdiffr r-cran-waldo r-cran-xml2 r-doc-html r-recommended wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 292 newly installed, 0 to remove and 0 not upgraded. Need to get 194 MB of archives. After unpacking 760 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf readline-common all 8.2-1.3 [69.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf openssl armhf 3.0.9-1 [1381 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.2 [591 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf zip armhf 3.0-13 [218 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf unzip armhf 6.0-28 [152 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 40 http://deb.debian.org/debian bookworm/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian bookworm/main armhf libblas3 armhf 3.11.0-2 [105 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 43 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf libpng16-16 armhf 1.6.39-2 [260 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [332 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf fonts-dejavu-core all 2.37-6 [1068 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf fontconfig-config armhf 2.14.1-4 [315 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf libfontconfig1 armhf 2.14.1-4 [368 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libpixman-1-0 armhf 0.42.2-1 [465 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libx11-data all 2:1.8.4-2 [292 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf libx11-6 armhf 2:1.8.4-2 [695 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libcairo2 armhf 1.16.0-7 [493 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1 [60.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 67 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 68 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10 [347 kB] Get: 69 http://deb.debian.org/debian bookworm/main armhf libglib2.0-0 armhf 2.74.6-2 [1227 kB] Get: 70 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB] Get: 71 http://deb.debian.org/debian bookworm/main armhf libgfortran5 armhf 12.2.0-14 [246 kB] Get: 72 http://deb.debian.org/debian bookworm/main armhf liblapack3 armhf 3.11.0-2 [1724 kB] Get: 73 http://deb.debian.org/debian bookworm/main armhf fontconfig armhf 2.14.1-4 [448 kB] Get: 74 http://deb.debian.org/debian bookworm/main armhf libfribidi0 armhf 1.0.8-2.1 [63.1 kB] Get: 75 http://deb.debian.org/debian bookworm/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 76 http://deb.debian.org/debian bookworm/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1893 kB] Get: 77 http://deb.debian.org/debian bookworm/main armhf libthai-data all 0.1.29-1 [176 kB] Get: 78 http://deb.debian.org/debian bookworm/main armhf libdatrie1 armhf 0.2.13-2+b1 [39.9 kB] Get: 79 http://deb.debian.org/debian bookworm/main armhf libthai0 armhf 0.1.29-1 [54.3 kB] Get: 80 http://deb.debian.org/debian bookworm/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [188 kB] Get: 81 http://deb.debian.org/debian bookworm/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.9 kB] Get: 82 http://deb.debian.org/debian bookworm/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.3 kB] Get: 83 http://deb.debian.org/debian bookworm/main armhf libreadline8 armhf 8.2-1.3 [144 kB] Get: 84 http://deb.debian.org/debian bookworm/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [922 kB] Get: 85 http://deb.debian.org/debian bookworm/main armhf libdeflate0 armhf 1.14-1 [52.2 kB] Get: 86 http://deb.debian.org/debian bookworm/main armhf libjbig0 armhf 2.1-6.1 [27.1 kB] Get: 87 http://deb.debian.org/debian bookworm/main armhf liblerc4 armhf 4.0.0+ds-2 [137 kB] Get: 88 http://deb.debian.org/debian bookworm/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB] Get: 89 http://deb.debian.org/debian bookworm/main armhf libtiff6 armhf 4.5.0-6 [295 kB] Get: 90 http://deb.debian.org/debian bookworm/main armhf libxft2 armhf 2.3.6-1 [53.8 kB] Get: 91 http://deb.debian.org/debian bookworm/main armhf x11-common all 1:7.7+23 [252 kB] Get: 92 http://deb.debian.org/debian bookworm/main armhf libxss1 armhf 1:1.2.3-1 [17.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main armhf libtk8.6 armhf 8.6.13-2 [689 kB] Get: 94 http://deb.debian.org/debian bookworm/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 95 http://deb.debian.org/debian bookworm/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 96 http://deb.debian.org/debian bookworm/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 97 http://deb.debian.org/debian bookworm/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB] Get: 98 http://deb.debian.org/debian bookworm/main armhf libgfortran-12-dev armhf 12.2.0-14 [298 kB] Get: 99 http://deb.debian.org/debian bookworm/main armhf gfortran-12 armhf 12.2.0-14 [7633 kB] Get: 100 http://deb.debian.org/debian bookworm/main armhf gfortran armhf 4:12.2.0-3 [1424 B] Get: 101 http://deb.debian.org/debian bookworm/main armhf libblas-dev armhf 3.11.0-2 [115 kB] Get: 102 http://deb.debian.org/debian bookworm/main armhf liblapack-dev armhf 3.11.0-2 [1798 kB] Get: 103 http://deb.debian.org/debian bookworm/main armhf libncurses6 armhf 6.4-4 [81.1 kB] Get: 104 http://deb.debian.org/debian bookworm/main armhf libncurses-dev armhf 6.4-4 [311 kB] Get: 105 http://deb.debian.org/debian bookworm/main armhf libncurses5-dev armhf 6.4-4 [932 B] Get: 106 http://deb.debian.org/debian bookworm/main armhf libreadline-dev armhf 8.2-1.3 [136 kB] Get: 107 http://deb.debian.org/debian bookworm/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [260 kB] Get: 108 http://deb.debian.org/debian bookworm/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB] Get: 109 http://deb.debian.org/debian bookworm/main armhf libpcre2-16-0 armhf 10.42-1 [211 kB] Get: 110 http://deb.debian.org/debian bookworm/main armhf libpcre2-32-0 armhf 10.42-1 [203 kB] Get: 111 http://deb.debian.org/debian bookworm/main armhf libpcre2-posix3 armhf 10.42-1 [55.0 kB] Get: 112 http://deb.debian.org/debian bookworm/main armhf libpcre2-dev armhf 10.42-1 [666 kB] Get: 113 http://deb.debian.org/debian bookworm/main armhf libpcre3 armhf 2:8.39-15 [315 kB] Get: 114 http://deb.debian.org/debian bookworm/main armhf libpcre16-3 armhf 2:8.39-15 [235 kB] Get: 115 http://deb.debian.org/debian bookworm/main armhf libpcre32-3 armhf 2:8.39-15 [226 kB] Get: 116 http://deb.debian.org/debian bookworm/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB] Get: 117 http://deb.debian.org/debian bookworm/main armhf libpcre3-dev armhf 2:8.39-15 [591 kB] Get: 118 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 119 http://deb.debian.org/debian bookworm/main armhf libpng-dev armhf 1.6.39-2 [343 kB] Get: 120 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 121 http://deb.debian.org/debian bookworm/main armhf liblzma-dev armhf 5.4.1-0.2 [248 kB] Get: 122 http://deb.debian.org/debian bookworm/main armhf icu-devtools armhf 72.1-3 [183 kB] Get: 123 http://deb.debian.org/debian bookworm/main armhf libicu-dev armhf 72.1-3 [10.1 MB] Get: 124 http://deb.debian.org/debian bookworm/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB] Get: 125 http://deb.debian.org/debian bookworm/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 126 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 129 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Get: 130 http://deb.debian.org/debian bookworm/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B] Get: 131 http://deb.debian.org/debian bookworm/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 132 http://deb.debian.org/debian bookworm/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 133 http://deb.debian.org/debian bookworm/main armhf libclone-perl armhf 0.46-1 [13.1 kB] Get: 134 http://deb.debian.org/debian bookworm/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 135 http://deb.debian.org/debian bookworm/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 136 http://deb.debian.org/debian bookworm/main armhf libhttp-date-perl all 6.05-2 [10.5 kB] Get: 137 http://deb.debian.org/debian bookworm/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 138 http://deb.debian.org/debian bookworm/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 139 http://deb.debian.org/debian bookworm/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B] Get: 140 http://deb.debian.org/debian bookworm/main armhf liburi-perl all 5.17-1 [90.4 kB] Get: 141 http://deb.debian.org/debian bookworm/main armhf libhttp-message-perl all 6.44-1 [81.7 kB] Get: 142 http://deb.debian.org/debian bookworm/main armhf libparams-util-perl armhf 1.102-2+b1 [23.8 kB] Get: 143 http://deb.debian.org/debian bookworm/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB] Get: 145 http://deb.debian.org/debian bookworm/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB] Get: 146 http://deb.debian.org/debian bookworm/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 147 http://deb.debian.org/debian bookworm/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.7 kB] Get: 148 http://deb.debian.org/debian bookworm/main armhf libparams-classify-perl armhf 0.015-2+b1 [21.9 kB] Get: 149 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 150 http://deb.debian.org/debian bookworm/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 151 http://deb.debian.org/debian bookworm/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 152 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 153 http://deb.debian.org/debian bookworm/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.7 kB] Get: 155 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 156 http://deb.debian.org/debian bookworm/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 157 http://deb.debian.org/debian bookworm/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 158 http://deb.debian.org/debian bookworm/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 159 http://deb.debian.org/debian bookworm/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 161 http://deb.debian.org/debian bookworm/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get: 162 http://deb.debian.org/debian bookworm/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB] Get: 163 http://deb.debian.org/debian bookworm/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 164 http://deb.debian.org/debian bookworm/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 165 http://deb.debian.org/debian bookworm/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 166 http://deb.debian.org/debian bookworm/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB] Get: 168 http://deb.debian.org/debian bookworm/main armhf libmoose-perl armhf 2.2203-1 [793 kB] Get: 169 http://deb.debian.org/debian bookworm/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.5 kB] Get: 170 http://deb.debian.org/debian bookworm/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get: 171 http://deb.debian.org/debian bookworm/main armhf libsub-identify-perl armhf 0.14-3 [10.5 kB] Get: 172 http://deb.debian.org/debian bookworm/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB] Get: 173 http://deb.debian.org/debian bookworm/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 174 http://deb.debian.org/debian bookworm/main armhf libcurl3-gnutls armhf 7.88.1-10 [343 kB] Get: 175 http://deb.debian.org/debian bookworm/main armhf libwww-curl-perl armhf 4.17-10 [56.1 kB] Get: 176 http://deb.debian.org/debian bookworm/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 177 http://deb.debian.org/debian bookworm/main armhf dh-r all 20230121 [37.9 kB] Get: 178 http://deb.debian.org/debian bookworm/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 179 http://deb.debian.org/debian bookworm/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 180 http://deb.debian.org/debian bookworm/main armhf fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 181 http://deb.debian.org/debian bookworm/main armhf javascript-common all 11+nmu1 [6260 B] Get: 182 http://deb.debian.org/debian bookworm/main armhf libboost1.74-dev armhf 1.74.0+ds1-21 [9508 kB] Get: 183 http://deb.debian.org/debian bookworm/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 184 http://deb.debian.org/debian bookworm/main armhf libcairo-gobject2 armhf 1.16.0-7 [111 kB] Get: 185 http://deb.debian.org/debian bookworm/main armhf libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 186 http://deb.debian.org/debian bookworm/main armhf shared-mime-info armhf 2.2-1 [726 kB] Get: 187 http://deb.debian.org/debian bookworm/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.10+dfsg-1+b1 [124 kB] Get: 188 http://deb.debian.org/debian bookworm/main armhf libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 189 http://deb.debian.org/debian bookworm/main armhf libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 190 http://deb.debian.org/debian bookworm/main armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 191 http://deb.debian.org/debian bookworm/main armhf libjs-d3 all 3.5.17-4 [132 kB] Get: 192 http://deb.debian.org/debian bookworm/main armhf libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 193 http://deb.debian.org/debian bookworm/main armhf libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 194 http://deb.debian.org/debian bookworm/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 195 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 196 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] Get: 197 http://deb.debian.org/debian bookworm/main armhf libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 198 http://deb.debian.org/debian bookworm/main armhf libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 199 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 200 http://deb.debian.org/debian bookworm/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 201 http://deb.debian.org/debian bookworm/main armhf libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 202 http://deb.debian.org/debian bookworm/main armhf libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 203 http://deb.debian.org/debian bookworm/main armhf libjs-modernizr all 2.6.2+ds1-5 [47.1 kB] Get: 204 http://deb.debian.org/debian bookworm/main armhf libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 205 http://deb.debian.org/debian bookworm/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 206 http://deb.debian.org/debian bookworm/main armhf liblua5.3-0 armhf 5.3.6-2 [101 kB] Get: 207 http://deb.debian.org/debian bookworm/main armhf librsvg2-2 armhf 2.54.5+dfsg-1 [2194 kB] Get: 208 http://deb.debian.org/debian bookworm/main armhf libuv1 armhf 1.44.2-1 [126 kB] Get: 209 http://deb.debian.org/debian bookworm/main armhf libyaml-0-2 armhf 0.2.5-1 [46.8 kB] Get: 210 http://deb.debian.org/debian bookworm/main armhf node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 211 http://deb.debian.org/debian bookworm/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 212 http://deb.debian.org/debian bookworm/main armhf node-normalize.css all 8.0.1-5 [12.7 kB] Get: 213 http://deb.debian.org/debian bookworm/main armhf pandoc-data all 2.17.1.1-1.1 [417 kB] Get: 214 http://deb.debian.org/debian bookworm/main armhf pandoc armhf 2.17.1.1-1.1 [25.9 MB] Get: 215 http://deb.debian.org/debian bookworm/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB] Get: 216 http://deb.debian.org/debian bookworm/main armhf r-cran-littler armhf 0.3.17-1 [93.4 kB] Get: 217 http://deb.debian.org/debian bookworm/main armhf r-cran-rjson armhf 0.2.21-1 [136 kB] Get: 218 http://deb.debian.org/debian bookworm/main armhf r-cran-bitops armhf 1.0-7-1 [30.0 kB] Get: 219 http://deb.debian.org/debian bookworm/main armhf r-cran-rcurl armhf 1.98-1.10+dfsg-1 [780 kB] Get: 220 http://deb.debian.org/debian bookworm/main armhf r-cran-dbi all 1.1.3-1 [687 kB] Get: 221 http://deb.debian.org/debian bookworm/main armhf r-cran-digest armhf 0.6.31-1 [178 kB] Get: 222 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB] Get: 223 http://deb.debian.org/debian bookworm/main armhf r-cran-rcpp armhf 1.0.10-1 [2042 kB] Get: 224 http://deb.debian.org/debian bookworm/main armhf r-cran-cli armhf 3.6.0-1 [1276 kB] Get: 225 http://deb.debian.org/debian bookworm/main armhf r-cran-glue armhf 1.6.2-1 [151 kB] Get: 226 http://deb.debian.org/debian bookworm/main armhf r-cran-gtable all 0.3.1+dfsg-1 [165 kB] Get: 227 http://deb.debian.org/debian bookworm/main armhf r-cran-isoband armhf 0.2.7-1 [1610 kB] Get: 228 http://deb.debian.org/debian bookworm/main armhf r-cran-rlang armhf 1.0.6-1 [1612 kB] Get: 229 http://deb.debian.org/debian bookworm/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB] Get: 230 http://deb.debian.org/debian bookworm/main armhf r-cran-mass armhf 7.3-58.2-1 [1120 kB] Get: 231 http://deb.debian.org/debian bookworm/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB] Get: 232 http://deb.debian.org/debian bookworm/main armhf r-cran-nlme armhf 3.1.162-1 [2246 kB] Get: 233 http://deb.debian.org/debian bookworm/main armhf r-cran-matrix armhf 1.5-3-1 [3758 kB] Get: 234 http://deb.debian.org/debian bookworm/main armhf r-cran-mgcv armhf 1.8-41-1 [3127 kB] Get: 235 http://deb.debian.org/debian bookworm/main armhf r-cran-farver armhf 2.1.1-1 [1391 kB] Get: 236 http://deb.debian.org/debian bookworm/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 237 http://deb.debian.org/debian bookworm/main armhf r-cran-colorspace armhf 2.1-0+dfsg-1 [1688 kB] Get: 238 http://deb.debian.org/debian bookworm/main armhf r-cran-munsell all 0.5.0-2 [236 kB] Get: 239 http://deb.debian.org/debian bookworm/main armhf r-cran-r6 all 2.5.1-1 [105 kB] Get: 240 http://deb.debian.org/debian bookworm/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 241 http://deb.debian.org/debian bookworm/main armhf r-cran-viridislite all 0.4.1-1 [1299 kB] Get: 242 http://deb.debian.org/debian bookworm/main armhf r-cran-scales all 1.2.1-1 [614 kB] Get: 243 http://deb.debian.org/debian bookworm/main armhf r-cran-fansi armhf 1.0.4-1 [609 kB] Get: 244 http://deb.debian.org/debian bookworm/main armhf r-cran-magrittr armhf 2.0.3-1 [201 kB] Get: 245 http://deb.debian.org/debian bookworm/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB] Get: 246 http://deb.debian.org/debian bookworm/main armhf r-cran-vctrs armhf 0.5.2-1 [1342 kB] Get: 247 http://deb.debian.org/debian bookworm/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB] Get: 248 http://deb.debian.org/debian bookworm/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 249 http://deb.debian.org/debian bookworm/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [513 kB] Get: 250 http://deb.debian.org/debian bookworm/main armhf r-cran-withr all 2.5.0-1 [236 kB] Get: 251 http://deb.debian.org/debian bookworm/main armhf r-cran-ggplot2 all 3.4.1+dfsg-1 [3333 kB] Get: 252 http://deb.debian.org/debian bookworm/main armhf r-cran-gridextra all 2.3-3 [1024 kB] Get: 253 http://deb.debian.org/debian bookworm/main armhf r-cran-png armhf 0.1-8-1 [40.1 kB] Get: 254 http://deb.debian.org/debian bookworm/main armhf r-cran-base64enc armhf 0.1-3-3 [27.6 kB] Get: 255 http://deb.debian.org/debian bookworm/main armhf r-cran-fastmap armhf 1.1.1-1 [66.7 kB] Get: 256 http://deb.debian.org/debian bookworm/main armhf r-cran-ellipsis armhf 0.3.2-2 [34.7 kB] Get: 257 http://deb.debian.org/debian bookworm/main armhf r-cran-htmltools armhf 0.5.4-1 [364 kB] Get: 258 http://deb.debian.org/debian bookworm/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [438 kB] Get: 259 http://deb.debian.org/debian bookworm/main armhf r-cran-yaml armhf 2.3.7-1 [94.2 kB] Get: 260 http://deb.debian.org/debian bookworm/main armhf r-cran-evaluate all 0.20-1 [85.9 kB] Get: 261 http://deb.debian.org/debian bookworm/main armhf r-cran-xfun armhf 0.37+dfsg-1 [394 kB] Get: 262 http://deb.debian.org/debian bookworm/main armhf r-cran-highr all 0.10+dfsg-1 [38.1 kB] Get: 263 http://deb.debian.org/debian bookworm/main armhf r-cran-knitr all 1.42+dfsg-1 [901 kB] Get: 264 http://deb.debian.org/debian bookworm/main armhf r-cran-fs armhf 1.6.1+dfsg-1 [223 kB] Get: 265 http://deb.debian.org/debian bookworm/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB] Get: 266 http://deb.debian.org/debian bookworm/main armhf r-cran-sass armhf 0.4.5+dfsg-1 [836 kB] Get: 267 http://deb.debian.org/debian bookworm/main armhf r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 268 http://deb.debian.org/debian bookworm/main armhf r-cran-cachem armhf 1.0.7-1 [71.5 kB] Get: 269 http://deb.debian.org/debian bookworm/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 270 http://deb.debian.org/debian bookworm/main armhf r-cran-mime armhf 0.12-1+b1 [35.9 kB] Get: 271 http://deb.debian.org/debian bookworm/main armhf r-cran-bslib all 0.4.2+dfsg-1 [3773 kB] Get: 272 http://deb.debian.org/debian bookworm/main armhf r-cran-stringi armhf 1.7.12-1 [832 kB] Get: 273 http://deb.debian.org/debian bookworm/main armhf r-cran-stringr all 1.5.0-1 [295 kB] Get: 274 http://deb.debian.org/debian bookworm/main armhf r-cran-tinytex all 0.44-1 [138 kB] Get: 275 http://deb.debian.org/debian bookworm/main armhf r-cran-later armhf 1.3.0+dfsg-1+b1 [110 kB] Get: 276 http://deb.debian.org/debian bookworm/main armhf r-cran-promises armhf 1.2.0.1+dfsg-1 [272 kB] Get: 277 http://deb.debian.org/debian bookworm/main armhf r-cran-httpuv armhf 1.6.9+dfsg-1 [449 kB] Get: 278 http://deb.debian.org/debian bookworm/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 279 http://deb.debian.org/debian bookworm/main armhf r-cran-fontawesome all 0.5.0-1 [1304 kB] Get: 280 http://deb.debian.org/debian bookworm/main armhf r-cran-sourcetools armhf 0.1.7-1-1 [43.7 kB] Get: 281 http://deb.debian.org/debian bookworm/main armhf r-cran-crayon all 1.5.2-1 [165 kB] Get: 282 http://deb.debian.org/debian bookworm/main armhf r-cran-commonmark armhf 1.8.1-1 [96.3 kB] Get: 283 http://deb.debian.org/debian bookworm/main armhf r-cran-shiny all 1.7.4+dfsg-2+deb12u1 [2751 kB] Get: 284 http://deb.debian.org/debian bookworm/main armhf r-cran-rmarkdown all 2.20+dfsg-1 [2265 kB] Get: 285 http://deb.debian.org/debian bookworm/main armhf r-cran-htmlwidgets all 1.6.1+dfsg-1 [120 kB] Get: 286 http://deb.debian.org/debian bookworm/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [142 kB] Get: 287 http://deb.debian.org/debian bookworm/main armhf r-cran-crosstalk all 1.2.0+dfsg-1 [171 kB] Get: 288 http://deb.debian.org/debian bookworm/main armhf r-cran-dt all 0.27+dfsg-1 [236 kB] Get: 289 http://deb.debian.org/debian bookworm/main armhf r-cran-rsvg armhf 2.4.0-1 [265 kB] Get: 290 http://deb.debian.org/debian bookworm/main armhf r-cran-bh all 1.74.0-2 [5524 B] Get: 291 http://deb.debian.org/debian bookworm/main armhf r-bioc-chemminer armhf 3.50.0+dfsg-1 [1164 kB] Get: 292 http://deb.debian.org/debian bookworm/main armhf r-cran-runit all 0.4.32-3 [294 kB] Fetched 194 MB in 20s (9689 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19324 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.9-1_armhf.deb ... Unpacking openssl (3.0.9-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_armhf.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../005-libmagic1_1%3a5.44-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_armhf.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_armhf.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_armhf.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_armhf.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.7-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_armhf.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.19-3_armhf.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../019-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../027-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../029-libicu72_72.1-3_armhf.deb ... Unpacking libicu72:armhf (72.1-3) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-13_armhf.deb ... Unpacking zip (3.0-13) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../037-libpaper1_1.1.29_armhf.deb ... Unpacking libpaper1:armhf (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29_armhf.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. 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Unpacking r-cran-crosstalk (1.2.0+dfsg-1) ... Selecting previously unselected package r-cran-dt. Preparing to unpack .../287-r-cran-dt_0.27+dfsg-1_all.deb ... Unpacking r-cran-dt (0.27+dfsg-1) ... Selecting previously unselected package r-cran-rsvg. Preparing to unpack .../288-r-cran-rsvg_2.4.0-1_armhf.deb ... Unpacking r-cran-rsvg (2.4.0-1) ... Selecting previously unselected package r-cran-bh. Preparing to unpack .../289-r-cran-bh_1.74.0-2_all.deb ... Unpacking r-cran-bh (1.74.0-2) ... Selecting previously unselected package r-bioc-chemminer. Preparing to unpack .../290-r-bioc-chemminer_3.50.0+dfsg-1_armhf.deb ... Unpacking r-bioc-chemminer (3.50.0+dfsg-1) ... Selecting previously unselected package r-cran-runit. Preparing to unpack .../291-r-cran-runit_0.4.32-3_all.deb ... Unpacking r-cran-runit (0.4.32-3) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libjs-json (0~20221030+~1.0.8-1) ... Setting up javascript-common (11+nmu1) ... Setting up libgraphite2-3:armhf (1.3.14-1) ... Setting up libpixman-1-0:armhf (0.42.2-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:armhf (1:1.0.9-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libboost1.74-dev:armhf (1.74.0+ds1-21) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up liblerc4:armhf (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libpcre16-3:armhf (2:8.39-15) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libdatrie1:armhf (0.2.13-2+b1) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libclone-perl:armhf (0.46-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:armhf (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libglib2.0-0:armhf (2.74.6-2) ... No schema files found: doing nothing. Setting up libjs-sifter.js (0.6.0+dfsg-3) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up node-html5shiv (3.7.3+dfsg-5) ... Setting up libnghttp2-14:armhf (1.52.0-1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up libdeflate0:armhf (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... Setting up file (1:5.44-3) ... Setting up libjs-modernizr (2.6.2+ds1-5) ... Setting up libjbig0:armhf (2.1-6.1) ... Setting up libpcre2-16-0:armhf (10.42-1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libjs-es5-shim (4.6.7-2) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up libpcre3:armhf (2:8.39-15) ... Setting up zip (3.0-13) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.42-1) ... Setting up libblas3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4-4) ... Setting up libfribidi0:armhf (1.0.8-2.1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up libpng16-16:armhf (1.6.39-2) ... Setting up libpcre32-3:armhf (2:8.39-15) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up libgfortran5:armhf (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.2.4-0.2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up liblzma-dev:armhf (5.4.1-0.2) ... Setting up libsub-name-perl:armhf (0.26-2+b1) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up libpcre2-posix3:armhf (10.42-1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:armhf (4.5.0-6) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up liblua5.3-0:armhf (5.3.6-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libboost-dev:armhf (1.74.0.3) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up pandoc-data (2.17.1.1-1.1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.0.9-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up node-normalize.css (8.0.1-5) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libicu-dev:armhf (72.1-3) ... Setting up libxml2:armhf (2.9.14+dfsg-1.2) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.17-1) ... Setting up libblas-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:armhf (1.0.8-5+b1) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpcrecpp0v5:armhf (2:8.39-15) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up r-cran-bh (1.74.0-2) ... Setting up libice6:armhf (2:1.0.10-1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up liblapack3:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.4-4) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libpcre2-dev:armhf (10.42-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libpcre3-dev:armhf (2:8.39-15) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libreadline8:armhf (8.2-1.3) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:armhf (1.6.39-2) ... Setting up libjpeg-dev:armhf (1:2.1.5-2) ... Setting up libgfortran-12-dev:armhf (12.2.0-14) ... Setting up libxcb-shm0:armhf (1.15-1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libreadline-dev:armhf (8.2-1.3) ... Setting up libdevel-callchecker-perl:armhf (0.008-2) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (2.17.1.1-1.1) ... Setting up libfreetype6:armhf (2.12.1+dfsg-5) ... Setting up shared-mime-info (2.2-1) ... Setting up liblapack-dev:armhf (3.11.0-2) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libdata-optlist-perl (0.113-1) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libncurses5-dev:armhf (6.4-4) ... Setting up libcurl4:armhf (7.88.1-10) ... Setting up libx11-6:armhf (2:1.8.4-2) ... Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.10+dfsg-1+b1) ... Setting up libfontconfig1:armhf (2.14.1-4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libxmuu1:armhf (2:1.1.3-3) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:armhf (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libxrender1:armhf (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl:armhf (0.015-2+b1) ... Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:armhf (7.88.1-10) ... Setting up libpaper-utils (1.1.29) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:armhf (1.16.0-7) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libxt6:armhf (1:1.2.1-1.1) ... Setting up xauth (1:1.1.2-1) ... Setting up libcairo-gobject2:armhf (1.16.0-7) ... Setting up libxss1:armhf (1:1.2.3-1) ... Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ... Setting up libxft2:armhf (2.3.6-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libtk8.6:armhf (8.6.13-2) ... Setting up libwww-curl-perl:armhf (4.17-10) ... Setting up debhelper (13.11.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up librsvg2-2:armhf (2.54.5+dfsg-1) ... Setting up r-base-core (4.2.2.20221110-2) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-gtable (0.3.1+dfsg-1) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up r-cran-rsvg (2.4.0-1) ... Setting up r-cran-lattice (0.20-45-3) ... Setting up r-cran-nlme (3.1.162-1) ... Setting up r-cran-farver (2.1.1-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.1-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b1) ... Setting up r-cran-lazyeval (0.2.2-1+b1) ... Setting up r-cran-commonmark (1.8.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.2-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-littler (0.3.17-1) ... Setting up r-cran-fs (1.6.1+dfsg-1) ... Setting up r-cran-rcpp (1.0.10-1) ... Setting up r-bioc-biocgenerics (0.44.0-2) ... Setting up r-cran-rlang (1.0.6-1) ... Setting up r-base-dev (4.2.2.20221110-2) ... Setting up r-cran-xfun (0.37+dfsg-1) ... Setting up r-cran-withr (2.5.0-1) ... Setting up r-cran-mime (0.12-1+b1) ... Setting up libmoose-perl:armhf (2.2203-1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.31-1) ... Setting up r-cran-yaml (2.3.7-1) ... Setting up r-cran-evaluate (0.20-1) ... Setting up r-cran-dbi (1.1.3-1) ... Setting up r-cran-highr (0.10+dfsg-1) ... Setting up r-cran-fansi (1.0.4-1) ... Setting up r-cran-mass (7.3-58.2-1) ... Setting up r-cran-glue (1.6.2-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.0-1) ... Setting up r-cran-lifecycle (1.0.3+dfsg-1) ... Setting up r-cran-bitops (1.0-7-1) ... Setting up r-cran-fastmap (1.1.1-1) ... Setting up r-cran-png (0.1-8-1) ... Setting up r-cran-jsonlite (1.8.4+dfsg-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.3-1) ... Setting up r-cran-colorspace (2.1-0+dfsg-1) ... Setting up r-cran-stringi (1.7.12-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-cran-isoband (0.2.7-1) ... Setting up r-cran-runit (0.4.32-3) ... Setting up r-cran-gridextra (2.3-3) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-later (1.3.0+dfsg-1+b1) ... Setting up r-cran-matrix (1.5-3-1) ... Setting up r-cran-tinytex (0.44-1) ... Setting up r-cran-knitr (1.42+dfsg-1) ... Setting up r-cran-mgcv (1.8-41-1) ... Setting up r-cran-cachem (1.0.7-1) ... Setting up r-cran-rjson (0.2.21-1) ... Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ... Setting up r-cran-vctrs (0.5.2-1) ... Setting up r-cran-pillar (1.8.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.2-2) ... Setting up r-cran-stringr (1.5.0-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-tibble (3.1.8+dfsg-1) ... Setting up r-cran-scales (1.2.1-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.2.0.1+dfsg-1) ... Setting up r-cran-htmltools (0.5.4-1) ... Setting up r-cran-sass (0.4.5+dfsg-1) ... Setting up dh-r (20230121) ... Setting up r-cran-ggplot2 (3.4.1+dfsg-1) ... Setting up r-cran-httpuv (1.6.9+dfsg-1) ... Setting up r-cran-fontawesome (0.5.0-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-bslib (0.4.2+dfsg-1) ... Setting up r-cran-shiny (1.7.4+dfsg-2+deb12u1) ... Setting up r-cran-rmarkdown (2.20+dfsg-1) ... Setting up r-cran-crosstalk (1.2.0+dfsg-1) ... Setting up r-cran-htmlwidgets (1.6.1+dfsg-1) ... Setting up r-cran-dt (0.27+dfsg-1) ... Setting up r-bioc-chemminer (3.50.0+dfsg-1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-fmcsr-1.40.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-fmcsr_1.40.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-fmcsr dpkg-buildpackage: info: source version 1.40.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R configure.ac:32: warning: AC_OUTPUT should be used without arguments. configure.ac:32: You should run autoupdate. dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-fmcsr/ -O--buildsystem=R I: R Package: fmcsR Version: 1.40.0 I: Building using R version 4.2.2.20221110-2 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 20 Nov 2022 16:34:35 +0100 mkdir -p /build/r-bioc-fmcsr-1.40.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-fmcsr-1.40.0\+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 20 Nov 2022 16:34:35 +0100'" * installing *source* package 'fmcsR' ... ** using staged installation checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for alarm... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating config.h ** libs make[1]: Entering directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCS.cpp -o MCS.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSCompound.cpp -o MCSCompound.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSMap.cpp -o MCSMap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MCSRingDetector.cpp -o MCSRingDetector.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fmcs_R_wrap.cpp -o fmcs_R_wrap.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-dMPcIs/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c util.cpp -o util.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o fmcsR.so MCS.o MCSCompound.o MCSMap.o MCSRingDetector.o fmcs_R_wrap.o util.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' make[1]: Entering directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' make[1]: Leaving directory '/build/r-bioc-fmcsr-1.40.0+dfsg/src' installing to /build/r-bioc-fmcsr-1.40.0+dfsg/debian/r-bioc-fmcsr/usr/lib/R/site-library/00LOCK-r-bioc-fmcsr-1.40.0+dfsg/00new/fmcsR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmcsR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306. W: Ignoring specified R dependency: R (>= 2.10.0) I: Using r-bioc-chemminer for Depends:ChemmineR I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr W: Cannot find a debian package for Suggests:knitcitations W: Cannot find a debian package for Suggests:knitrBootstrap I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-runit for Imports:RUnit I: Using r-bioc-chemminer for Imports:ChemmineR I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: BioConductor API version: r-api-bioc-3.16 I: Use r-bioc-fmcsr as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-fmcsr' in '../r-bioc-fmcsr_1.40.0+dfsg-1_armhf.deb'. dpkg-deb: building package 'r-bioc-fmcsr-dbgsym' in '../r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-fmcsr_1.40.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1764 and its subdirectories I: Current time: Wed Jun 7 02:01:54 -12 2023 I: pbuilder-time-stamp: 1686146514 Wed Jun 7 14:02:11 UTC 2023 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Wed Jun 7 14:02:11 UTC 2023 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Wed Jun 7 14:06:58 UTC 2023 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Wed Jun 7 14:07:03 UTC 2023 I: r-bioc-fmcsr_1.40.0+dfsg-1_armhf.changes: Format: 1.8 Date: Sun, 20 Nov 2022 16:34:35 +0100 Source: r-bioc-fmcsr Binary: r-bioc-fmcsr r-bioc-fmcsr-dbgsym Architecture: armhf Version: 1.40.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-fmcsr - GNU R mismatch tolerant maximum common substructure searching Changes: r-bioc-fmcsr (1.40.0+dfsg-1) unstable; urgency=medium . * New upstream version * Update lintian override info format in d/source/lintian-overrides on line 2. Checksums-Sha1: 6a58aaab1ee07406e9c8a612023163c6b293903e 757104 r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_armhf.deb b8d9dbb3cf2964cbaa1b2326422d406f63ea1889 13468 r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo 2a2c97b01e9a6d54fe59bb026811626ecaae466e 226920 r-bioc-fmcsr_1.40.0+dfsg-1_armhf.deb Checksums-Sha256: e209e17884eeda030a7bda198582fd7aa9efd1fe441b1e2cdcd8f94e166b07e7 757104 r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_armhf.deb bcda4dd0c9f36e6cdf7f15dad5e6d2f1c107d81bed7b6bf2ea945c17bdcf72b6 13468 r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo c0e57d4314f86597c35a74232c90ae8204cbb4d2dc31fe66c517c70fa82bad7d 226920 r-bioc-fmcsr_1.40.0+dfsg-1_armhf.deb Files: 1004490ffa6cc420add4b54e432c5df1 757104 debug optional r-bioc-fmcsr-dbgsym_1.40.0+dfsg-1_armhf.deb 8cf83cb418d13fc2b7533b891fcd6e88 13468 gnu-r optional r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo b1edbcbfffd82507fb92756569d36f96 226920 gnu-r optional r-bioc-fmcsr_1.40.0+dfsg-1_armhf.deb Wed Jun 7 14:07:04 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/r-bioc-fmcsr_1.40.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/b1/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.d0JCXvTs/b2/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.502s) 2.502s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.043s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Wed Jun 7 14:07:08 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 7 14:07:08 UTC 2023 I: r-bioc-fmcsr from bookworm built successfully and reproducibly on armhf. Wed Jun 7 14:07:09 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Jun 7 14:07:09 UTC 2023 I: Submitting 16K b1/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo.asc Wed Jun 7 14:07:10 UTC 2023 I: Submitting 16K b2/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo.asc Wed Jun 7 14:07:11 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 7 14:07:11 UTC 2023 I: Done submitting .buildinfo files. Wed Jun 7 14:07:11 UTC 2023 I: Removing signed r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo.asc files: removed './b1/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo.asc' removed './b2/r-bioc-fmcsr_1.40.0+dfsg-1_armhf.buildinfo.asc'