Tue Mar 19 10:53:29 UTC 2024 I: starting to build seqan-needle/bookworm/armhf on jenkins on '2024-03-19 10:53' Tue Mar 19 10:53:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_26/1536/console.log Tue Mar 19 10:53:29 UTC 2024 I: Downloading source for bookworm/seqan-needle=1.0.1.0.0.git.3011926+ds-4 --2024-03-19 10:53:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.1.0.0.git.3011926%2bds-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2281 (2.2K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc’ 0K .. 100% 3.21M=0.001s 2024-03-19 10:53:29 (3.21 MB/s) - ‘seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc’ saved [2281/2281] Tue Mar 19 10:53:29 UTC 2024 I: seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-needle Binary: seqan-needle, seqan-needle-doc Architecture: any all Version: 1.0.1.0.0.git.3011926+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/needle Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/seqan-needle Vcs-Git: https://salsa.debian.org/med-team/seqan-needle.git Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen Package-List: seqan-needle deb science optional arch=any seqan-needle-doc deb doc optional arch=all Checksums-Sha1: 6f02b770d15e7b9c7908ab2c4131d7de060f2885 5068548 seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz e484a3867f677c7a91ac21744337637bcdcfd25b 6052 seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz Checksums-Sha256: 6ec1cf11797f5d7660970bb1ed8a1d58eafc61ba8bc2bc5afcbb61582413298b 5068548 seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz 0f39029448ddca892db717c02cfd153eccd4b315ee6a2fb42db73d7eaed454ef 6052 seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz Files: 6f0d8eeaa8523806c16d305d60696d42 5068548 seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz 16c8be5f321c4109a6b2980b8139efa0 6052 seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/StERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGQwA/9FzYd1wuKt/yT2mjRMvzrPqCy81pW6tRV uZM3lD1/ZCW/Cu+ARhxMG3EERb6tGDx1/hRKfhhYe9VVDxVJRybUKS6F/S9vm8bH 5w9YWYhYm5Y6KQXxQbgm128nOAy8tFO2umKsWmxgkn5XPKvV51uI4dittY4czk4f 4zmpsd4l6L7kTtnrKz3h+TjyX/nYq1JLI2dOt/9nTRnQG5p4LoOpsi6WMjNIAaM4 FYDdfjAPaZOnIBrYP29z0ER2UETL6HvVdy4kR2X6AVCykkaxa8Q6zCKU4eJkccNL TPuWIfn50/FVkki37FnGtZdqayyjljeYPRp48/Hb5jiSYjp2EEr5VLj/qzs6vctG T1GVs7+c+XlnWxPfFQ8CqGYo9ZcZfpzDW2Peu98PZgxudZ0jwEwXg5f45mhhuHft cbOSwAIObqSV5BVM/JEQzqN7PeIAiuHORvEvgNifvn6nd9bZSmEQPyCdAe3z/AAR dZItgfEPUfBGLSd8RKctNFFYSm7A+vrLHQ3YFLrGfVRPhoWshkiCL8dJ2gqI4NDO Wc1nQ4uJWY7P23m01jHKVKCgV7gBErvzEgtfNuIQ1gNGCn9ZyUl/VdsjmToEnQD5 PxZI4KxvxusI29kKB+CdiowsMYwp94z3VKODhYjxwqPXY0LshPWDwu6CVMsNY0mW WF58scte39E= =DcMj -----END PGP SIGNATURE----- Tue Mar 19 10:53:29 UTC 2024 I: Checking whether the package is not for us Tue Mar 19 10:53:29 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Tue Mar 19 10:53:29 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Tue Mar 19 10:55:19 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 18 22:53:37 -12 2024 I: pbuilder-time-stamp: 1710845617 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc] I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 23 22:43:29 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.1.0.0.git.3011926+ds dpkg-source: info: unpacking seqan-needle_1.0.1.0.0.git.3011926+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.1.0.0.git.3011926+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying privacy dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29041/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='0030fd2d02a844c1bb97ee7bd2d09ae0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29041' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Eri7vrH8/pbuilderrc_3QLx --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Eri7vrH8/b1 --logfile b1/build.log seqan-needle_1.0.1.0.0.git.3011926+ds-4.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-18-arm64 #1 SMP Debian 6.1.76-1 (2024-02-01) aarch64 GNU/Linux I: ls -l /bin total 4964 -rwxr-xr-x 1 root root 838488 Apr 23 2023 bash -rwxr-xr-x 3 root root 67144 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67144 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67112 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 67632 Sep 20 2022 cat -rwxr-xr-x 1 root root 67676 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67644 Sep 20 2022 chmod -rwxr-xr-x 1 root root 67684 Sep 20 2022 chown -rwxr-xr-x 1 root root 133532 Sep 20 2022 cp -rwxr-xr-x 1 root root 132868 Jan 5 2023 dash -rwxr-xr-x 1 root root 133220 Sep 20 2022 date -rwxr-xr-x 1 root root 67732 Sep 20 2022 dd -rwxr-xr-x 1 root root 68104 Sep 20 2022 df -rwxr-xr-x 1 root root 133632 Sep 20 2022 dir -rwxr-xr-x 1 root root 59128 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 67560 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 67548 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 55748 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 26208 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 128608 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 64220 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67032 Dec 19 2022 hostname -rwxr-xr-x 1 root root 67720 Sep 20 2022 ln -rwxr-xr-x 1 root root 35132 Mar 22 2023 login -rwxr-xr-x 1 root root 133632 Sep 20 2022 ls -rwxr-xr-x 1 root root 136808 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 67800 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 67764 Sep 20 2022 mknod -rwxr-xr-x 1 root root 67596 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 38504 Mar 22 2023 more -rwsr-xr-x 1 root root 38496 Mar 22 2023 mount -rwxr-xr-x 1 root root 9824 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 133532 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 67608 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 67600 Sep 20 2022 readlink -rwxr-xr-x 1 root root 67672 Sep 20 2022 rm -rwxr-xr-x 1 root root 67600 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 14152 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133372 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 67584 Sep 20 2022 sleep -rwxr-xr-x 1 root root 67644 Sep 20 2022 stty -rwsr-xr-x 1 root root 50800 Mar 22 2023 su -rwxr-xr-x 1 root root 67584 Sep 20 2022 sync -rwxr-xr-x 1 root root 336764 Jan 19 21:27 tar -rwxr-xr-x 1 root root 9800 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 133224 Sep 20 2022 touch -rwxr-xr-x 1 root root 67548 Sep 20 2022 true -rwxr-xr-x 1 root root 9768 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 22108 Mar 22 2023 umount -rwxr-xr-x 1 root root 67572 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 133632 Sep 20 2022 vdir -rwxr-xr-x 1 root root 42608 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/29041/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19288 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp14{a} libclang1-14{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libllvm14{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 74.3 MB of archives. After unpacking 313 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main armhf libproc2-0 armhf 2:4.0.2-3 [54.2 kB] Get: 2 http://deb.debian.org/debian bookworm/main armhf procps armhf 2:4.0.2-3 [695 kB] Get: 3 http://deb.debian.org/debian bookworm/main armhf sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 4 http://deb.debian.org/debian bookworm/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB] Get: 5 http://deb.debian.org/debian bookworm/main armhf libmagic1 armhf 1:5.44-3 [96.5 kB] Get: 6 http://deb.debian.org/debian bookworm/main armhf file armhf 1:5.44-3 [41.6 kB] Get: 7 http://deb.debian.org/debian bookworm/main armhf gettext-base armhf 0.21-12 [157 kB] Get: 8 http://deb.debian.org/debian bookworm/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 9 http://deb.debian.org/debian bookworm/main armhf groff-base armhf 1.22.4-10 [825 kB] Get: 10 http://deb.debian.org/debian bookworm/main armhf bsdextrautils armhf 2.38.1-5+b1 [78.6 kB] Get: 11 http://deb.debian.org/debian bookworm/main armhf libpipeline1 armhf 1.5.7-1 [33.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main armhf man-db armhf 2.11.2-2 [1351 kB] Get: 13 http://deb.debian.org/debian bookworm/main armhf m4 armhf 1.4.19-3 [265 kB] Get: 14 http://deb.debian.org/debian bookworm/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian bookworm/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian bookworm/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian bookworm/main armhf autopoint all 0.21-12 [495 kB] Get: 18 http://deb.debian.org/debian bookworm/main armhf libicu72 armhf 72.1-3 [9048 kB] Get: 19 http://deb.debian.org/debian bookworm/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [591 kB] Get: 20 http://deb.debian.org/debian bookworm/main armhf libarchive13 armhf 3.6.2-1 [299 kB] Get: 21 http://deb.debian.org/debian bookworm/main armhf libbrotli1 armhf 1.0.9-2+b6 [271 kB] Get: 22 http://deb.debian.org/debian bookworm/main armhf libsasl2-modules-db armhf 2.1.28+dfsg-10 [19.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main armhf libsasl2-2 armhf 2.1.28+dfsg-10 [52.3 kB] Get: 24 http://deb.debian.org/debian bookworm/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5 [158 kB] Get: 25 http://deb.debian.org/debian bookworm/main armhf libnghttp2-14 armhf 1.52.0-1+deb12u1 [62.1 kB] Get: 26 http://deb.debian.org/debian bookworm/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB] Get: 27 http://deb.debian.org/debian bookworm/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 28 http://deb.debian.org/debian bookworm/main armhf libssh2-1 armhf 1.10.0-3+b1 [163 kB] Get: 29 http://deb.debian.org/debian bookworm/main armhf libcurl4 armhf 7.88.1-10+deb12u5 [351 kB] Get: 30 http://deb.debian.org/debian bookworm/main armhf libexpat1 armhf 2.5.0-1 [79.9 kB] Get: 31 http://deb.debian.org/debian bookworm/main armhf libjsoncpp25 armhf 1.9.5-4 [68.6 kB] Get: 32 http://deb.debian.org/debian bookworm/main armhf librhash0 armhf 1.4.3-3 [146 kB] Get: 33 http://deb.debian.org/debian bookworm/main armhf libuv1 armhf 1.44.2-1 [126 kB] Get: 34 http://deb.debian.org/debian bookworm/main armhf cmake-data all 3.25.1-1 [2026 kB] Get: 35 http://deb.debian.org/debian bookworm/main armhf cmake armhf 3.25.1-1 [4263 kB] Get: 36 http://deb.debian.org/debian bookworm/main armhf libdebhelper-perl all 13.11.4 [81.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main armhf libtool all 2.4.7-5 [517 kB] Get: 38 http://deb.debian.org/debian bookworm/main armhf dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian bookworm/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian bookworm/main armhf libsub-override-perl all 0.09-4 [9304 B] Get: 41 http://deb.debian.org/debian bookworm/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian bookworm/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian bookworm/main armhf libelf1 armhf 0.188-2.1 [170 kB] Get: 44 http://deb.debian.org/debian bookworm/main armhf dwz armhf 0.15-1 [101 kB] Get: 45 http://deb.debian.org/debian bookworm/main armhf gettext armhf 0.21-12 [1229 kB] Get: 46 http://deb.debian.org/debian bookworm/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian bookworm/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bookworm/main armhf debhelper all 13.11.4 [942 kB] Get: 49 http://deb.debian.org/debian bookworm/main armhf libbsd0 armhf 0.11.7-2 [113 kB] Get: 50 http://deb.debian.org/debian bookworm/main armhf libedit2 armhf 3.1-20221030-2 [77.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main armhf libz3-4 armhf 4.8.12-3.1 [6061 kB] Get: 52 http://deb.debian.org/debian bookworm/main armhf libllvm14 armhf 1:14.0.6-12 [19.4 MB] Get: 53 http://deb.debian.org/debian bookworm/main armhf libclang-cpp14 armhf 1:14.0.6-12 [9417 kB] Get: 54 http://deb.debian.org/debian bookworm/main armhf libclang1-14 armhf 1:14.0.6-12 [5175 kB] Get: 55 http://deb.debian.org/debian bookworm/main armhf doxygen armhf 1.9.4-4 [4176 kB] Get: 56 http://deb.debian.org/debian bookworm/main armhf googletest all 1.12.1-0.2 [506 kB] Get: 57 http://deb.debian.org/debian bookworm/main armhf libbz2-dev armhf 1.0.8-5+b1 [28.1 kB] Get: 58 http://deb.debian.org/debian bookworm/main armhf rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB] Get: 59 http://deb.debian.org/debian bookworm/main armhf libcereal-dev armhf 1.3.2+dfsg-4 [221 kB] Get: 60 http://deb.debian.org/debian bookworm/main armhf libgtest-dev armhf 1.12.1-0.2 [232 kB] Get: 61 http://deb.debian.org/debian bookworm/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB] Get: 62 http://deb.debian.org/debian bookworm/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [902 kB] Get: 63 http://deb.debian.org/debian bookworm/main armhf libseqan3-dev all 3.2.0+ds-6 [752 kB] Get: 64 http://deb.debian.org/debian bookworm/main armhf pkgconf-bin armhf 1.8.1-1 [28.5 kB] Get: 65 http://deb.debian.org/debian bookworm/main armhf pkgconf armhf 1.8.1-1 [25.9 kB] Get: 66 http://deb.debian.org/debian bookworm/main armhf pkg-config armhf 1.8.1-1 [13.7 kB] Fetched 74.3 MB in 1s (68.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19288 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.2-3_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.2-3_armhf.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.17+nmu1_all.deb ... 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Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg-10_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../24-libnghttp2-14_1.52.0-1+deb12u1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.52.0-1+deb12u1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../25-libpsl5_0.21.2-1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../27-libssh2-1_1.10.0-3+b1_armhf.deb ... Unpacking libssh2-1:armhf (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../28-libcurl4_7.88.1-10+deb12u5_armhf.deb ... Unpacking libcurl4:armhf (7.88.1-10+deb12u5) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../29-libexpat1_2.5.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:armhf. Preparing to unpack .../30-libjsoncpp25_1.9.5-4_armhf.deb ... Unpacking libjsoncpp25:armhf (1.9.5-4) ... Selecting previously unselected package librhash0:armhf. Preparing to unpack .../31-librhash0_1.4.3-3_armhf.deb ... Unpacking librhash0:armhf (1.4.3-3) ... Selecting previously unselected package libuv1:armhf. Preparing to unpack .../32-libuv1_1.44.2-1_armhf.deb ... Unpacking libuv1:armhf (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.25.1-1_armhf.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../35-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../36-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../37-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../38-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../39-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../40-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../41-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../42-libelf1_0.188-2.1_armhf.deb ... Unpacking libelf1:armhf (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../43-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../44-gettext_0.21-12_armhf.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../45-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../46-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../47-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../48-libbsd0_0.11.7-2_armhf.deb ... Unpacking libbsd0:armhf (0.11.7-2) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../49-libedit2_3.1-20221030-2_armhf.deb ... Unpacking libedit2:armhf (3.1-20221030-2) ... Selecting previously unselected package libz3-4:armhf. Preparing to unpack .../50-libz3-4_4.8.12-3.1_armhf.deb ... Unpacking libz3-4:armhf (4.8.12-3.1) ... Selecting previously unselected package libllvm14:armhf. Preparing to unpack .../51-libllvm14_1%3a14.0.6-12_armhf.deb ... Unpacking libllvm14:armhf (1:14.0.6-12) ... Selecting previously unselected package libclang-cpp14. Preparing to unpack .../52-libclang-cpp14_1%3a14.0.6-12_armhf.deb ... Unpacking libclang-cpp14 (1:14.0.6-12) ... Selecting previously unselected package libclang1-14. Preparing to unpack .../53-libclang1-14_1%3a14.0.6-12_armhf.deb ... Unpacking libclang1-14 (1:14.0.6-12) ... Selecting previously unselected package doxygen. Preparing to unpack .../54-doxygen_1.9.4-4_armhf.deb ... Unpacking doxygen (1.9.4-4) ... Selecting previously unselected package googletest. Preparing to unpack .../55-googletest_1.12.1-0.2_all.deb ... Unpacking googletest (1.12.1-0.2) ... Selecting previously unselected package libbz2-dev:armhf. Preparing to unpack .../56-libbz2-dev_1.0.8-5+b1_armhf.deb ... Unpacking libbz2-dev:armhf (1.0.8-5+b1) ... Selecting previously unselected package rapidjson-dev. 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Selecting previously unselected package pkgconf-bin. Preparing to unpack .../63-pkgconf-bin_1.8.1-1_armhf.deb ... Unpacking pkgconf-bin (1.8.1-1) ... Selecting previously unselected package pkgconf:armhf. Preparing to unpack .../64-pkgconf_1.8.1-1_armhf.deb ... Unpacking pkgconf:armhf (1.8.1-1) ... Selecting previously unselected package pkg-config:armhf. Preparing to unpack .../65-pkg-config_1.8.1-1_armhf.deb ... Unpacking pkg-config:armhf (1.8.1-1) ... Setting up libexpat1:armhf (2.5.0-1) ... Setting up libpipeline1:armhf (1.5.7-1) ... Setting up libpsl5:armhf (0.21.2-1) ... Setting up libicu72:armhf (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:armhf (1.0.9-2+b6) ... Setting up libnghttp2-14:armhf (1.52.0-1+deb12u1) ... Setting up libmagic1:armhf (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up googletest (1.12.1-0.2) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1) ... Setting up libpkgconf3:armhf (1.8.1-1) ... Setting up libuv1:armhf (1.44.2-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:armhf (2:4.0.2-3) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:armhf (1.9.5-4) ... Setting up pkgconf-bin (1.8.1-1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:armhf (1.4.3-3) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:armhf (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libbsd0:armhf (0.11.7-2) ... Setting up libelf1:armhf (0.188-2.1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3~deb12u1) ... Setting up libbz2-dev:armhf (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libgtest-dev:armhf (1.12.1-0.2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:armhf (3.6.2-1) ... Setting up libedit2:armhf (3.1-20221030-2) ... Setting up libcereal-dev (1.3.2+dfsg-4) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5) ... Setting up pkgconf:armhf (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:armhf (1.8.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:armhf (1:14.0.6-12) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:armhf (7.88.1-10+deb12u5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libseqan3-dev (3.2.0+ds-6) ... Setting up libclang1-14 (1:14.0.6-12) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp14 (1:14.0.6-12) ... Setting up cmake (3.25.1-1) ... Setting up debhelper (13.11.4) ... Setting up doxygen (1.9.4-4) ... Processing triggers for libc-bin (2.36-9+deb12u4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.1.0.0.git.3011926+ds-4_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.1.0.0.git.3011926+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds' rm -Rf lib/seqan3 dh_auto_configure -- -DSEQAN3_NO_LEMON=OFF cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DSEQAN3_NO_LEMON=OFF .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): CMakeLists.txt:28 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds' dh_auto_build --arch cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds -B/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf/src /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/needle_lib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' [ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o cd /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp [ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp In file included from /usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15, from /usr/include/seqan3/alphabet/nucleotide/dna4.hpp:17, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:27: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:666:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:179:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15, from /usr/include/seqan3/alphabet/nucleotide/dna4.hpp:17, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:25: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:666:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:179:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:22, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:18, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:14, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include/shared.h:14, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include/ibf.h:19, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:33: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:20:56: error: unable to emulate ‘TI’ 20 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:22, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:18, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:14, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include/shared.h:14, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/../include/estimate.h:12, from /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:29: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:20:56: error: unable to emulate ‘TI’ 20 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = false; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:703:32: required from here /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:555:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 555 | seqan3::bin_count{num_files}, seqan3::bin_size{size}, | ^~~~ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = false; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:705:33: required from here /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:555:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = true; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:725:25: required from here /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:555:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = true; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:727:26: required from here /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/ibf.cpp:555:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp: In instantiation of ‘const seqan3::interleaved_bloom_filter::membership_agent_type::binning_bitvector& seqan3::interleaved_bloom_filter::membership_agent_type::bulk_contains(size_t) & [with seqan3::data_layout data_layout_mode = seqan3::compressed; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:47:76: required from ‘void check_ibf(const min_arguments&, const IBFType&, std::vector&, seqan3::dna4_vector, std::vector&, const exp_t&, uint16_t, std::vector) [with IBFType = seqan3::interleaved_bloom_filter; bool last_exp = true; bool normalization = true; exp_t = std::vector >; seqan3::dna4_vector = std::vector; uint16_t = short unsigned int]’ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:194:43: required from ‘void estimate(estimate_ibf_arguments&, IBFType&, std::filesystem::__cxx11::path, const estimate_arguments&) [with IBFType = seqan3::interleaved_bloom_filter; bool samplewise = true; bool normalization_method = true]’ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:263:104: required from here /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:635:24: error: narrowing conversion of ‘18446744073709551615’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 635 | size_t tmp{-1ULL}; | ^~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp: In instantiation of ‘const seqan3::interleaved_bloom_filter::membership_agent_type::binning_bitvector& seqan3::interleaved_bloom_filter::membership_agent_type::bulk_contains(size_t) & [with seqan3::data_layout data_layout_mode = seqan3::uncompressed; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:47:76: required from ‘void check_ibf(const min_arguments&, const IBFType&, std::vector&, seqan3::dna4_vector, std::vector&, const exp_t&, uint16_t, std::vector) [with IBFType = seqan3::interleaved_bloom_filter; bool last_exp = true; bool normalization = true; exp_t = std::vector >; seqan3::dna4_vector = std::vector; uint16_t = short unsigned int]’ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:194:43: required from ‘void estimate(estimate_ibf_arguments&, IBFType&, std::filesystem::__cxx11::path, const estimate_arguments&) [with IBFType = seqan3::interleaved_bloom_filter; bool samplewise = true; bool normalization_method = true]’ /build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/src/estimate.cpp:278:106: required from here /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:635:24: error: narrowing conversion of ‘18446744073709551615’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] make[4]: *** [src/CMakeFiles/needle_lib.dir/build.make:93: src/CMakeFiles/needle_lib.dir/estimate.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [src/CMakeFiles/needle_lib.dir/build.make:79: src/CMakeFiles/needle_lib.dir/ibf.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:235: src/CMakeFiles/needle_lib.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' make[2]: *** [Makefile:149: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:17: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.1.0.0.git.3011926+ds' make: *** [debian/rules:10: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29041 and its subdirectories Tue Mar 19 10:55:22 UTC 2024 W: No second build log, what happened?