Tue Jun 13 23:35:34 UTC 2023 I: starting to build ampliconnoise/bookworm/i386 on jenkins on '2023-06-13 23:35' Tue Jun 13 23:35:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/766/console.log Tue Jun 13 23:35:34 UTC 2023 I: Downloading source for bookworm/ampliconnoise=1.29-10 --2023-06-13 23:35:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/ampliconnoise/ampliconnoise_1.29-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2156 (2.1K) [text/prs.lines.tag] Saving to: ‘ampliconnoise_1.29-10.dsc’ 0K .. 100% 105M=0s 2023-06-13 23:35:34 (105 MB/s) - ‘ampliconnoise_1.29-10.dsc’ saved [2156/2156] Tue Jun 13 23:35:34 UTC 2023 I: ampliconnoise_1.29-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ampliconnoise Binary: ampliconnoise Architecture: any Version: 1.29-10 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille , Pranav Ballaney Homepage: https://github.com/lanzen/ampliconnoise Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ampliconnoise Vcs-Git: https://salsa.debian.org/med-team/ampliconnoise.git Testsuite: autopkgtest Testsuite-Triggers: openmpi-bin Build-Depends: debhelper-compat (= 13), libgsl-dev, libopenmpi-dev Package-List: ampliconnoise deb science optional arch=any Checksums-Sha1: 743cbd53fa3410dea902f3dc82864041defc3c4b 1403119 ampliconnoise_1.29.orig.tar.gz 7a46a23a59e4b96bec1e5823528c987ba7b1f981 10652 ampliconnoise_1.29-10.debian.tar.xz Checksums-Sha256: 0bf946806d77ecaf0994ad8ebf9a5e98ad33c809f6def5c9340a16c367918167 1403119 ampliconnoise_1.29.orig.tar.gz e8d621804f8fdde0b12ef05a160a8ac490b0c944dad94a21f79dd23d82ffffec 10652 ampliconnoise_1.29-10.debian.tar.xz Files: d6723e6f9cc71d7eb6f1a65ba4643aac 1403119 ampliconnoise_1.29.orig.tar.gz eca56f7fb6fbea9704744485d09a885f 10652 ampliconnoise_1.29-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFgslsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFNhw//VWLEcyX9XV5VX+jGqJvg+Efat8YG3r+l rCdL9MfPD3CjCeoifNucT/rVcfJr6GFC7bOdJNlw94VH95UoFKv7eB8GU+Nrdnho zMigimCAuUooseksP9L41uCKrcj6AXf5+3xy5PMRy9O/J05kQKqzS53k6kH5TJQ1 iGCPrMYoQVgAHtVOjJ2se1KWICayeedBi3/BfOzOg7Dl2TE2v7Pz6yOaN82ufKJX dB4qYRGU999gnZW4UM+KT5PKzmsz1+/BnUbwOJbi8Y1Lmay3ln1Q4hUxlwboFWDQ nYki3KtVefD0gNFrst25OCyoV54+ivXtHUb2IlS8noEMGlJ5eJkfwIE6DnTUhRVw Q0v4rZByViXnwG+T0vrL+FPIPxsqEmkkHPv0s6CJC/Zh4fChOzmWSeUZv5uXLZ9I ZuLLAemsiAXt1P/datKL/Z3aDJI/KpbHp7SccLpMUPCY5+KaMqTNPQmyn+OtNqGv ogKTpKXttiwu8NEjYree9csQrRzxCBUes+dc6k5if708CimVCaGAAVahii26K3X8 h6zTcc7hllwVsHKrdCmvOcdWYAJLinRn0lsSDyfheqvaTokuQ35PGVnJDU/lPWbE WsQ3bGXzxduz81zc+paaeksH103hWCc7DAztPIIfqX8PRBm52p4puQL2z4ypYvcp 8/ZpROwcSjo= =bcyr -----END PGP SIGNATURE----- Tue Jun 13 23:35:34 UTC 2023 I: Checking whether the package is not for us Tue Jun 13 23:35:34 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Tue Jun 13 23:35:34 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Tue Jun 13 23:36:40 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 15 17:58:35 -12 2024 I: pbuilder-time-stamp: 1721109515 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] /usr/bin/tar: ./build: time stamp 2025-08-14 11:09:47 is 34103471.251537975 s in the future /usr/bin/tar: ./dev/null: time stamp 2025-08-14 11:09:27 is 34103451.251330685 s in the future /usr/bin/tar: ./dev/pts: time stamp 2025-08-14 11:09:27 is 34103451.251249012 s in the future /usr/bin/tar: ./dev/full: time stamp 2025-08-14 11:09:27 is 34103451.251194154 s in the future /usr/bin/tar: ./dev/tty: time stamp 2025-08-14 11:09:27 is 34103451.251140623 s in the future /usr/bin/tar: ./dev/zero: time stamp 2025-08-14 11:09:27 is 34103451.251085498 s in the future /usr/bin/tar: ./dev/console: time stamp 2025-08-14 11:09:27 is 34103451.250945862 s in the future /usr/bin/tar: ./dev/urandom: time stamp 2025-08-14 11:09:27 is 34103451.250842375 s 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the future /usr/bin/tar: ./usr/lib/locale/ps_AF: time stamp 2025-08-14 11:09:52 is 34103468.364213738 s in the future /usr/bin/tar: ./usr/lib/locale/crh_UA: time stamp 2025-08-14 11:09:52 is 34103468.364183941 s in the future /usr/bin/tar: ./usr/lib/locale/it_CH.utf8/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.364153242 s in the future /usr/bin/tar: ./usr/lib/locale/it_CH.utf8: time stamp 2025-08-14 11:09:52 is 34103468.364122807 s in the future /usr/bin/tar: ./usr/lib/locale/de_AT: time stamp 2025-08-14 11:09:52 is 34103468.364092477 s in the future /usr/bin/tar: ./usr/lib/locale/ta_IN: time stamp 2025-08-14 11:09:52 is 34103468.364062247 s in the future /usr/bin/tar: ./usr/lib/locale/es_GT/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.364031224 s in the future /usr/bin/tar: ./usr/lib/locale/es_GT: time stamp 2025-08-14 11:09:52 is 34103468.364001404 s in the future /usr/bin/tar: ./usr/lib/locale/om_ET: time stamp 2025-08-14 11:09:52 is 34103468.363970743 s in the future /usr/bin/tar: ./usr/lib/locale/niu_NU: time stamp 2025-08-14 11:09:52 is 34103468.363940527 s in the future /usr/bin/tar: ./usr/lib/locale/ca_FR/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.363910178 s in the future /usr/bin/tar: ./usr/lib/locale/ca_FR: time stamp 2025-08-14 11:09:52 is 34103468.363878912 s in the future /usr/bin/tar: ./usr/lib/locale/es_BO.utf8/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.363849667 s in the future /usr/bin/tar: ./usr/lib/locale/es_BO.utf8: time stamp 2025-08-14 11:09:52 is 34103468.363812854 s in the future /usr/bin/tar: ./usr/lib/locale/ber_MA: time stamp 2025-08-14 11:09:52 is 34103468.363781805 s in the future /usr/bin/tar: ./usr/lib/locale/es_ES/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.363750046 s in the future /usr/bin/tar: ./usr/lib/locale/es_ES: time stamp 2025-08-14 11:09:52 is 34103468.363720496 s in the future /usr/bin/tar: ./usr/lib/locale/de_BE/LC_MESSAGES: time stamp 2025-08-14 11:09:52 is 34103468.363687526 s in the future /usr/bin/tar: ./usr/lib/locale/de_BE: time stamp 2025-08-14 11:09:52 is 34103468.363656185 s in the future /usr/bin/tar: ./usr/lib/locale/sgs_LT: time stamp 2025-08-14 11:09:52 is 34103468.363621986 s in the future /usr/bin/tar: ./usr/lib/locale/fi_FI: time stamp 2025-08-14 11:09:52 is 34103468.36358953 s in the future /usr/bin/tar: ./usr/lib/locale/gl_ES: time stamp 2025-08-14 11:09:52 is 34103468.363557461 s in the future /usr/bin/tar: ./usr/lib/locale: time stamp 2025-08-14 11:09:52 is 34103468.363526697 s in the future /usr/bin/tar: ./usr/lib/bfd-plugins: time stamp 2025-08-14 11:09:45 is 34103461.36349718 s in the future /usr/bin/tar: ./usr/lib/apt/planners: time stamp 2025-08-14 11:09:29 is 34103445.363466782 s in the future /usr/bin/tar: ./usr/lib/apt: time stamp 2025-08-14 11:09:29 is 34103445.363435638 s in the future /usr/bin/tar: ./usr/lib/i386-linux-gnu/perl/cross-config-5.36.0: time stamp 2025-08-14 11:09:34 is 34103450.363402979 s in the future /usr/bin/tar: ./usr/lib/i386-linux-gnu/perl: time stamp 2025-08-14 11:09:26 is 34103442.363370794 s in the future /usr/bin/tar: ./usr/lib/i386-linux-gnu: time stamp 2025-08-14 11:09:50 is 34103466.363339774 s in the future /usr/bin/tar: ./usr/lib/compat-ld: time stamp 2025-08-14 11:09:40 is 34103456.363309413 s in the future /usr/bin/tar: ./usr/lib/gcc/i686-linux-gnu/12: time stamp 2025-08-14 11:09:44 is 34103460.36327562 s in the future /usr/bin/tar: ./usr/lib/gcc/i686-linux-gnu: time stamp 2025-08-14 11:09:41 is 34103457.363245095 s in the future /usr/bin/tar: ./usr/lib/gcc: time stamp 2025-08-14 11:09:41 is 34103457.363216916 s in the future /usr/bin/tar: ./usr/lib/gold-ld: time stamp 2025-08-14 11:09:40 is 34103456.363187016 s in the future /usr/bin/tar: ./usr/lib: time stamp 2025-08-14 11:09:45 is 34103461.363157203 s in the future /usr/bin/tar: ./usr/bin: time stamp 2025-08-14 11:09:52 is 34103468.36312544 s in the future /usr/bin/tar: ./usr: time stamp 2025-08-14 11:09:27 is 34103443.363094897 s in the future /usr/bin/tar: ./lib: time stamp 2025-08-14 11:09:46 is 34103462.363040655 s in the future /usr/bin/tar: ./etc/rc6.d: time stamp 2025-08-14 11:09:37 is 34103453.363008215 s in the future /usr/bin/tar: ./etc/systemd/system/multi-user.target.wants: time stamp 2025-08-14 11:09:38 is 34103454.362975327 s in the future /usr/bin/tar: ./etc/systemd/system/timers.target.wants: time stamp 2025-08-14 11:09:39 is 34103455.362943711 s in the future /usr/bin/tar: ./etc/systemd/system: time stamp 2025-08-14 11:09:38 is 34103454.362911973 s in the future /usr/bin/tar: ./etc/rcS.d: time stamp 2025-08-14 11:09:37 is 34103453.362749955 s in the future /usr/bin/tar: ./etc/alternatives: time stamp 2025-08-14 11:09:52 is 34103468.362708525 s in the future /usr/bin/tar: ./etc/rc0.d: time stamp 2025-08-14 11:09:37 is 34103453.36267506 s in the future /usr/bin/tar: ./bin: time stamp 2025-08-14 11:09:50 is 34103466.362598363 s in the future I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [ampliconnoise_1.29-10.dsc] I: copying [./ampliconnoise_1.29.orig.tar.gz] I: copying [./ampliconnoise_1.29-10.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Oct 8 09:04:27 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ampliconnoise_1.29-10.dsc: no acceptable signature found dpkg-source: info: extracting ampliconnoise in ampliconnoise-1.29 dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz dpkg-source: info: unpacking ampliconnoise_1.29-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-path-for-data.patch dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying clang-ftbfs.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6609/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6ebfb28cae7140269d8efb5719867239' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6609' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/pbuilderrc_p7bY --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/b1 --logfile b1/build.log ampliconnoise_1.29-10.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 6.1.0-9-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.27-1 (2023-05-08) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/6609/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libgsl-dev, libopenmpi-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-12{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-12-dev{a} libgfortran5{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmunge2{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpsm-infinipath1{a} librdmacm1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 47.0 MB of archives. After unpacking 184 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libcbor0.8 i386 0.8.0-2+b1 [29.8 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libfido2-1 i386 1.12.0-2+b1 [87.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 openssh-client i386 1:9.2p1-2 [1004 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 26 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 28 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libgfortran-12-dev i386 12.2.0-14 [761 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 gfortran-12 i386 12.2.0-14 [10.5 MB] Get: 39 http://deb.debian.org/debian bookworm/main i386 libnl-3-200 i386 3.7.0-0.2+b1 [66.2 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-200 i386 3.7.0-0.2+b1 [196 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libibverbs1 i386 44.0-2 [65.8 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 ibverbs-providers i386 44.0-2 [368 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 libevent-2.1-7 i386 2.1.12-stable-8 [194 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libevent-core-2.1-7 i386 2.1.12-stable-8 [139 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-8 [112 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-8 [53.7 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-8 [61.5 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libevent-dev i386 2.1.12-stable-8 [325 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.2 [177 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 librdmacm1 i386 44.0-2 [74.6 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libfabric1 i386 1.17.0-3 [538 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libgslcblas0 i386 2.7.1+dfsg-5 [99.6 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libgsl27 i386 2.7.1+dfsg-5 [921 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libgsl-dev i386 2.7.1+dfsg-5 [1176 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libhwloc15 i386 2.9.0-1 [168 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libnuma1 i386 2.0.16-1 [22.7 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libnuma-dev i386 2.0.16-1 [37.3 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libltdl7 i386 2.4.7-5 [394 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libltdl-dev i386 2.4.7-5 [167 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libhwloc-dev i386 2.9.0-1 [259 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libxnvctrl0 i386 525.85.05-1 [13.3 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 ocl-icd-libopencl1 i386 2.3.1-1 [45.4 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libhwloc-plugins i386 2.9.0-1 [17.8 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libnl-3-dev i386 3.7.0-0.2+b1 [109 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libnl-route-3-dev i386 3.7.0-0.2+b1 [226 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libibverbs-dev i386 44.0-2 [683 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libmunge2 i386 0.5.15-2 [20.3 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libpmix2 i386 4.2.2-1+b1 [652 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libopenmpi3 i386 4.1.4-3+b1 [2183 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 openmpi-common all 4.1.4-3 [167 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libpmix-dev i386 4.2.2-1+b1 [975 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 openmpi-bin i386 4.1.4-3+b1 [196 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libopenmpi-dev i386 4.1.4-3+b1 [920 kB] Fetched 47.0 MB in 2s (20.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../10-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../11-libedit2_3.1-20221030-2_i386.deb ... Unpacking libedit2:i386 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:i386. Preparing to unpack .../12-libcbor0.8_0.8.0-2+b1_i386.deb ... Unpacking libcbor0.8:i386 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:i386. Preparing to unpack .../13-libfido2-1_1.12.0-2+b1_i386.deb ... Unpacking libfido2-1:i386 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../14-openssh-client_1%3a9.2p1-2_i386.deb ... Unpacking openssh-client (1:9.2p1-2) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../20-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../24-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../25-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../26-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../27-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../28-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../29-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../30-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../35-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package libgfortran-12-dev:i386. Preparing to unpack .../36-libgfortran-12-dev_12.2.0-14_i386.deb ... Unpacking libgfortran-12-dev:i386 (12.2.0-14) ... Selecting previously unselected package gfortran-12. Preparing to unpack .../37-gfortran-12_12.2.0-14_i386.deb ... Unpacking gfortran-12 (12.2.0-14) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../38-libnl-3-200_3.7.0-0.2+b1_i386.deb ... Unpacking libnl-3-200:i386 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../39-libnl-route-3-200_3.7.0-0.2+b1_i386.deb ... Unpacking libnl-route-3-200:i386 (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs1:i386. Preparing to unpack .../40-libibverbs1_44.0-2_i386.deb ... Unpacking libibverbs1:i386 (44.0-2) ... Selecting previously unselected package ibverbs-providers:i386. Preparing to unpack .../41-ibverbs-providers_44.0-2_i386.deb ... Unpacking ibverbs-providers:i386 (44.0-2) ... Selecting previously unselected package libevent-2.1-7:i386. Preparing to unpack .../42-libevent-2.1-7_2.1.12-stable-8_i386.deb ... Unpacking libevent-2.1-7:i386 (2.1.12-stable-8) ... Selecting previously unselected package libevent-core-2.1-7:i386. Preparing to unpack .../43-libevent-core-2.1-7_2.1.12-stable-8_i386.deb ... Unpacking libevent-core-2.1-7:i386 (2.1.12-stable-8) ... Selecting previously unselected package libevent-extra-2.1-7:i386. Preparing to unpack .../44-libevent-extra-2.1-7_2.1.12-stable-8_i386.deb ... Unpacking libevent-extra-2.1-7:i386 (2.1.12-stable-8) ... Selecting previously unselected package libevent-pthreads-2.1-7:i386. Preparing to unpack .../45-libevent-pthreads-2.1-7_2.1.12-stable-8_i386.deb ... Unpacking libevent-pthreads-2.1-7:i386 (2.1.12-stable-8) ... Selecting previously unselected package libevent-openssl-2.1-7:i386. Preparing to unpack .../46-libevent-openssl-2.1-7_2.1.12-stable-8_i386.deb ... Unpacking libevent-openssl-2.1-7:i386 (2.1.12-stable-8) ... Selecting previously unselected package libevent-dev. Preparing to unpack .../47-libevent-dev_2.1.12-stable-8_i386.deb ... Unpacking libevent-dev (2.1.12-stable-8) ... Selecting previously unselected package libpsm-infinipath1. Preparing to unpack .../48-libpsm-infinipath1_3.3+20.604758e7-6.2_i386.deb ... Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.2) ... Selecting previously unselected package librdmacm1:i386. Preparing to unpack .../49-librdmacm1_44.0-2_i386.deb ... Unpacking librdmacm1:i386 (44.0-2) ... Selecting previously unselected package libfabric1:i386. Preparing to unpack .../50-libfabric1_1.17.0-3_i386.deb ... Unpacking libfabric1:i386 (1.17.0-3) ... Selecting previously unselected package libgslcblas0:i386. Preparing to unpack .../51-libgslcblas0_2.7.1+dfsg-5_i386.deb ... Unpacking libgslcblas0:i386 (2.7.1+dfsg-5) ... Selecting previously unselected package libgsl27:i386. Preparing to unpack .../52-libgsl27_2.7.1+dfsg-5_i386.deb ... Unpacking libgsl27:i386 (2.7.1+dfsg-5) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../53-libgsl-dev_2.7.1+dfsg-5_i386.deb ... Unpacking libgsl-dev (2.7.1+dfsg-5) ... Selecting previously unselected package libhwloc15:i386. Preparing to unpack .../54-libhwloc15_2.9.0-1_i386.deb ... Unpacking libhwloc15:i386 (2.9.0-1) ... Selecting previously unselected package libnuma1:i386. Preparing to unpack .../55-libnuma1_2.0.16-1_i386.deb ... Unpacking libnuma1:i386 (2.0.16-1) ... Selecting previously unselected package libnuma-dev:i386. Preparing to unpack .../56-libnuma-dev_2.0.16-1_i386.deb ... Unpacking libnuma-dev:i386 (2.0.16-1) ... Selecting previously unselected package libltdl7:i386. Preparing to unpack .../57-libltdl7_2.4.7-5_i386.deb ... Unpacking libltdl7:i386 (2.4.7-5) ... Selecting previously unselected package libltdl-dev:i386. Preparing to unpack .../58-libltdl-dev_2.4.7-5_i386.deb ... Unpacking libltdl-dev:i386 (2.4.7-5) ... Selecting previously unselected package libhwloc-dev:i386. Preparing to unpack .../59-libhwloc-dev_2.9.0-1_i386.deb ... Unpacking libhwloc-dev:i386 (2.9.0-1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../60-libpciaccess0_0.17-2_i386.deb ... Unpacking libpciaccess0:i386 (0.17-2) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../61-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../62-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../63-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../64-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../65-libx11-6_2%3a1.8.4-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../66-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:i386. Preparing to unpack .../67-libxnvctrl0_525.85.05-1_i386.deb ... Unpacking libxnvctrl0:i386 (525.85.05-1) ... Selecting previously unselected package ocl-icd-libopencl1:i386. Preparing to unpack .../68-ocl-icd-libopencl1_2.3.1-1_i386.deb ... Unpacking ocl-icd-libopencl1:i386 (2.3.1-1) ... Selecting previously unselected package libhwloc-plugins:i386. Preparing to unpack .../69-libhwloc-plugins_2.9.0-1_i386.deb ... Unpacking libhwloc-plugins:i386 (2.9.0-1) ... Selecting previously unselected package libnl-3-dev:i386. Preparing to unpack .../70-libnl-3-dev_3.7.0-0.2+b1_i386.deb ... Unpacking libnl-3-dev:i386 (3.7.0-0.2+b1) ... Selecting previously unselected package libnl-route-3-dev:i386. Preparing to unpack .../71-libnl-route-3-dev_3.7.0-0.2+b1_i386.deb ... Unpacking libnl-route-3-dev:i386 (3.7.0-0.2+b1) ... Selecting previously unselected package libibverbs-dev:i386. Preparing to unpack .../72-libibverbs-dev_44.0-2_i386.deb ... Unpacking libibverbs-dev:i386 (44.0-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../73-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../74-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 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Setting up libmunge2 (0.5.15-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libhwloc15:i386 (2.9.0-1) ... Setting up libevent-core-2.1-7:i386 (2.1.12-stable-8) ... Setting up libevent-2.1-7:i386 (2.1.12-stable-8) ... Setting up autopoint (0.21-12) ... Setting up libltdl7:i386 (2.4.7-5) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up libnuma1:i386 (2.0.16-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up ocl-icd-libopencl1:i386 (2.3.1-1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libnl-3-200:i386 (3.7.0-0.2+b1) ... Setting up openmpi-common (4.1.4-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.2) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:i386 (1.12.0-2+b1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up libevent-pthreads-2.1-7:i386 (2.1.12-stable-8) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:i386 (2.1.12-stable-8) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libgsl-dev (2.7.1+dfsg-5) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:i386 (3.1-20221030-2) ... Setting up libevent-openssl-2.1-7:i386 (2.1.12-stable-8) ... Setting up libgfortran-12-dev:i386 (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:i386 (2.0.16-1) ... Setting up libnl-route-3-200:i386 (3.7.0-0.2+b1) ... Setting up dh-autoreconf (20) ... Setting up libltdl-dev:i386 (2.4.7-5) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libevent-dev (2.1.12-stable-8) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libnl-3-dev:i386 (3.7.0-0.2+b1) ... Setting up groff-base (1.22.4-10) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libhwloc-dev:i386 (2.9.0-1) ... Setting up libibverbs1:i386 (44.0-2) ... Setting up ibverbs-providers:i386 (44.0-2) ... Setting up openssh-client (1:9.2p1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:i386 (525.85.05-1) ... Setting up libnl-route-3-dev:i386 (3.7.0-0.2+b1) ... Setting up librdmacm1:i386 (44.0-2) ... Setting up debhelper (13.11.4) ... Setting up libibverbs-dev:i386 (44.0-2) ... Setting up libhwloc-plugins:i386 (2.9.0-1) ... Setting up libfabric1:i386 (1.17.0-3) ... Setting up libpmix2:i386 (4.2.2-1+b1) ... Setting up libopenmpi3:i386 (4.1.4-3+b1) ... Setting up libpmix-dev:i386 (4.2.2-1+b1) ... Setting up openmpi-bin (4.1.4-3+b1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (4.1.4-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ampliconnoise-1.29/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ampliconnoise_1.29-10_source.changes dpkg-buildpackage: info: source package ampliconnoise dpkg-buildpackage: info: source version 1.29-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/ampliconnoise-1.29' (cd FCluster && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/FCluster' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *o FCluster make[2]: Leaving directory '/build/ampliconnoise-1.29/FCluster' (cd FastaUnique && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/FastaUnique' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o FastaUnique make[2]: Leaving directory '/build/ampliconnoise-1.29/FastaUnique' (cd NDist && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/NDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o NDist make[2]: Leaving directory '/build/ampliconnoise-1.29/NDist' (cd PyroDist && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o PyroDist make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroDist' (cd PyroNoise && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o PyroNoise make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoise' (cd PyroNoiseM && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseM' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o PyroNoiseM make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseM' (cd PyroNoiseA && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseA' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o PyroNoiseA make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseA' (cd SeqDist && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/SeqDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o SeqDist make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqDist' (cd SeqNoise && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/SeqNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o SeqNoise make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqNoise' (cd SplitClusterEven && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterEven' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o SplitClusterEven make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterEven' (cd SplitClusterClust && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterClust' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o SplitClusterClust make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterClust' (cd Perseus && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/Perseus' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o Perseus make[2]: Leaving directory '/build/ampliconnoise-1.29/Perseus' (cd PerseusD && make clean) make[2]: Entering directory '/build/ampliconnoise-1.29/PerseusD' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. rm -rf *.o PerseusD make[2]: Leaving directory '/build/ampliconnoise-1.29/PerseusD' (cd bin && rm -rf *) make[1]: Leaving directory '/build/ampliconnoise-1.29' debian/rules override_dh_clean make[1]: Entering directory '/build/ampliconnoise-1.29' dh_clean rm -f *.o rm -f *.1 make[1]: Leaving directory '/build/ampliconnoise-1.29' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ampliconnoise-1.29' (cd FCluster && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/FCluster' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FCluster.c FCluster.c:223:1: warning: return type defaults to 'int' [-Wimplicit-int] 223 | UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ FCluster.c: In function 'UpdateMinCacheForMarkedRows': FCluster.c:230:13: warning: implicit declaration of function 'UpdateMinCacheForRow'; did you mean 'UpdateMinCacheForMarkedRows'? [-Wimplicit-function-declaration] 230 | UpdateMinCacheForRow(asMin,i,aafDistMatrix); | ^~~~~~~~~~~~~~~~~~~~ | UpdateMinCacheForMarkedRows FCluster.c: At top level: FCluster.c:237:1: warning: return type defaults to 'int' [-Wimplicit-int] 237 | UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix) | ^~~~~~~~~~~~~~~~~~~~ linking... cc -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/FCluster' (cd FastaUnique && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/FastaUnique' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FastaUnique.c linking... cc -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/FastaUnique' (cd NDist && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/NDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c NDist.c NDist.c: In function 'readData': NDist.c:707:59: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] 707 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); | ^~~~~~~ NDist.c:17:1: note: include '' or provide a declaration of 'toupper' 16 | #include "NDist.h" +++ |+#include 17 | linking... mpicc -Wl,-z,relro -Wl,-z,now -o NDist NDist.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/NDist' (cd PyroDist && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroDist.c linking... mpicc -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroDist' (cd PyroNoise && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoise.c PyroNoise.c: In function 'writeCentroids': PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args] 2073 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoise' (cd SeqDist && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/SeqDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqDist.c SeqDist.c: In function 'readData': SeqDist.c:854:59: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] 854 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); | ^~~~~~~ SeqDist.c:17:1: note: include '' or provide a declaration of 'toupper' 16 | #include "SeqDist.h" +++ |+#include 17 | linking... mpicc -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqDist' (cd PyroNoiseM && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseM' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoiseM.c PyroNoiseM.c: In function 'writeCentroids': PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args] 2139 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseM' (cd PyroNoiseA && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/PyroNoiseA' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -O3 -c PyroNoiseA.c linking... mpicc -o PyroNoiseA PyroNoiseA.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/ampliconnoise-1.29/PyroNoiseA' (cd SeqNoise && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/SeqNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. mpicc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqNoise.c SeqNoise.c: In function 'main': SeqNoise.c:120:25: warning: too many arguments for format [-Wformat-extra-args] 120 | if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);} | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqNoise.c: In function 'readData': SeqNoise.c:652:59: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] 652 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); | ^~~~~~~ SeqNoise.c:9:1: note: include '' or provide a declaration of 'toupper' 8 | #include "SeqNoise.h" +++ |+#include 9 | linking... mpicc -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/SeqNoise' (cd SplitClusterEven && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterEven' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterEven.c SplitClusterEven.c: In function 'readMapFile': SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args] 681 | fprintf(stderr, "Failed to open map file\n", szMapFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c: In function 'main': SplitClusterEven.c:89:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:89:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024 89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:90:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:90:5: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024 90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:91:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:91:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024 91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:142:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:142:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024 142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:143:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:143:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024 143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:144:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX); | ^~ ~~~~~ SplitClusterEven.c:144:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024 144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... cc -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterEven' (cd SplitClusterClust && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/SplitClusterClust' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterClust.c SplitClusterClust.c: In function 'readMapFile': SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args] 316 | fprintf(stderr, "Failed to open map file\n", szMapFile); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterClust.c: In function 'main': SplitClusterClust.c:52:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~ ~~~~~ SplitClusterClust.c:52:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024 52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterClust.c:88:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~ ~~~~~ SplitClusterClust.c:88:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024 88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... gcc -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm make[2]: Leaving directory '/build/ampliconnoise-1.29/SplitClusterClust' (cd Perseus && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/Perseus' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c Perseus.c Perseus.c: In function 'readData': Perseus.c:856:59: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] 856 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); | ^~~~~~~ Perseus.c:17:1: note: include '' or provide a declaration of 'toupper' 16 | #include "Perseus.h" +++ |+#include 17 | Perseus.c: In function 'calcLoonIndex': Perseus.c:1637:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=] 1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE); | ^~ ~~~~~~~~~~~ Perseus.c:1637:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536 1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... cc -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o -lm -lgsl -lgslcblas make[2]: Leaving directory '/build/ampliconnoise-1.29/Perseus' (cd PerseusD && CFLAGS="-g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/build/ampliconnoise-1.29/PerseusD' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. cc -g -O2 -ffile-prefix-map=/build/ampliconnoise-1.29=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PerseusD.c PerseusD.c: In function 'readData': PerseusD.c:908:59: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] 908 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); | ^~~~~~~ PerseusD.c:17:1: note: include '' or provide a declaration of 'toupper' 16 | #include "PerseusD.h" +++ |+#include 17 | PerseusD.c: In function 'calcLoonIndex': PerseusD.c:1648:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=] 1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE); | ^~ ~~~~~~~~~~~ PerseusD.c:1648:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536 1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ linking... cc -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o -lm -lgsl -lgslcblas make[2]: Leaving directory '/build/ampliconnoise-1.29/PerseusD' make[1]: Leaving directory '/build/ampliconnoise-1.29' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/ampliconnoise-1.29' make install make[2]: Entering directory '/build/ampliconnoise-1.29' cp FCluster/FCluster bin cp FastaUnique/FastaUnique bin cp NDist/NDist bin cp PyroDist/PyroDist bin cp PyroNoise/PyroNoise bin cp PyroNoiseM/PyroNoiseM bin cp PyroNoiseA/PyroNoiseA bin cp SeqDist/SeqDist bin cp SeqNoise/SeqNoise bin cp SplitClusterEven/SplitClusterEven bin cp SplitClusterClust/SplitClusterClust bin cp Perseus/Perseus bin cp PerseusD/PerseusD bin make[2]: Leaving directory '/build/ampliconnoise-1.29' dh_install bin/* /usr/bin dh_install Data/* /usr/share/ampliconnoise/Data/ dh_install Scripts/* /usr/share/ampliconnoise/Scripts/ make[1]: Leaving directory '/build/ampliconnoise-1.29' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/ampliconnoise-1.29' debian/ampliconnoise.pod pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1 dh_installman ampliconnoise.1 ( for f in bin/* ; do \ ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \ done ) make[1]: Leaving directory '/build/ampliconnoise-1.29' dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/ampliconnoise-1.29' # Use xz compression for data file to shrink size even more find debian -name C005.dat -exec xz \{\} \; dh_compress --exclude=.pdf make[1]: Leaving directory '/build/ampliconnoise-1.29' dh_fixperms dh_missing dh_dwz -a dwz: debian/ampliconnoise/usr/bin/PyroNoiseA: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-10_i386.deb'. dpkg-deb: building package 'ampliconnoise-dbgsym' in '../ampliconnoise-dbgsym_1.29-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../ampliconnoise_1.29-10_i386.buildinfo dpkg-genchanges --build=binary -O../ampliconnoise_1.29-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6609 and its subdirectories I: Current time: Mon Jul 15 17:59:39 -12 2024 I: pbuilder-time-stamp: 1721109579 Tue Jun 13 23:36:40 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Jun 13 23:36:40 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Jun 13 23:37:53 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Jun 13 23:37:53 UTC 2023 I: ampliconnoise_1.29-10_i386.changes: Format: 1.8 Date: Fri, 08 Oct 2021 23:00:19 +0200 Source: ampliconnoise Binary: ampliconnoise ampliconnoise-dbgsym Architecture: i386 Version: 1.29-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ampliconnoise - removal of noise from 454 sequenced PCR amplicons Changes: ampliconnoise (1.29-10) unstable; urgency=medium . * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: c55c521e51e26d980e7833f087685f16990ac705 274144 ampliconnoise-dbgsym_1.29-10_i386.deb d874d3b7ee8789755b83c2b79e4a44fa0cb1a37d 6883 ampliconnoise_1.29-10_i386.buildinfo b259dfa0aea04a1e544509f4d86280e08be8b29a 1103116 ampliconnoise_1.29-10_i386.deb Checksums-Sha256: 4867547c30efad8c6f8556ef6622cc4c781bff27a159ee8d199bd0f34dacda98 274144 ampliconnoise-dbgsym_1.29-10_i386.deb d129b35e248de9d67a419c3e8c953a82dec8cec3dd45770c9e19a1e4e734f58a 6883 ampliconnoise_1.29-10_i386.buildinfo 65062f6c3a700391d9eb40b7f8eae89bc88bf3df3b9d3d2807503c19bd11cad6 1103116 ampliconnoise_1.29-10_i386.deb Files: 5bde734220541ef7e086dbad8642c647 274144 debug optional ampliconnoise-dbgsym_1.29-10_i386.deb 211777939996353c8664ecaf1ae4dc79 6883 science optional ampliconnoise_1.29-10_i386.buildinfo a79a3e03b26c47bb98027a7d353f2a4c 1103116 science optional ampliconnoise_1.29-10_i386.deb Tue Jun 13 23:37:54 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/ampliconnoise_1.29-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/ampliconnoise_1.29-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/ampliconnoise_1.29-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/b1/ampliconnoise_1.29-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.37bIaRj9/b2/ampliconnoise_1.29-10_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.323s) 0.323s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Jun 13 23:37:55 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Tue Jun 13 23:37:55 UTC 2023 I: ampliconnoise from bookworm built successfully and reproducibly on i386. Tue Jun 13 23:37:57 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Jun 13 23:37:57 UTC 2023 I: Submitting 8.0K b1/ampliconnoise_1.29-10_i386.buildinfo.asc Tue Jun 13 23:37:57 UTC 2023 I: Submitting 8.0K b2/ampliconnoise_1.29-10_i386.buildinfo.asc Tue Jun 13 23:37:58 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jun 13 23:37:58 UTC 2023 I: Done submitting .buildinfo files. Tue Jun 13 23:37:58 UTC 2023 I: Removing signed ampliconnoise_1.29-10_i386.buildinfo.asc files: removed './b1/ampliconnoise_1.29-10_i386.buildinfo.asc' removed './b2/ampliconnoise_1.29-10_i386.buildinfo.asc'