Sun Jan 14 23:33:19 UTC 2024 I: starting to build biojava-live/bookworm/i386 on jenkins on '2024-01-14 23:33' Sun Jan 14 23:33:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/10066/console.log Sun Jan 14 23:33:19 UTC 2024 I: Downloading source for bookworm/biojava-live=1:1.9.5+dfsg-3 --2024-01-14 23:33:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/biojava-live/biojava-live_1.9.5%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2460 (2.4K) [text/prs.lines.tag] Saving to: ‘biojava-live_1.9.5+dfsg-3.dsc’ 0K .. 100% 2.37M=0.001s 2024-01-14 23:33:19 (2.37 MB/s) - ‘biojava-live_1.9.5+dfsg-3.dsc’ saved [2460/2460] Sun Jan 14 23:33:19 UTC 2024 I: biojava-live_1.9.5+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biojava-live Binary: libbiojava1.9-java, libbiojava-java, libbiojava-java-doc Architecture: all Version: 1:1.9.5+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Olivier Sallou , Pierre Gruet Homepage: https://www.biojava.org Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/biojava-live Vcs-Git: https://salsa.debian.org/med-team/biojava-live.git Build-Depends: debhelper-compat (= 13), maven-debian-helper Build-Depends-Indep: default-jdk, junit4 , libcommons-dbcp-java, libjaxb-api-java, libjgrapht0.8-java, libjgrapht0.8-java-doc, libmaven-javadoc-plugin-java, libxerces2-java Package-List: libbiojava-java deb java optional arch=all libbiojava-java-doc deb doc optional arch=all libbiojava1.9-java deb java optional arch=all Checksums-Sha1: 763ee56e11412a1418c8e1d590bcb30b8543ddde 3788780 biojava-live_1.9.5+dfsg.orig.tar.xz 0cf972e4bf695218f04560fef8b5f8a674237faf 10492 biojava-live_1.9.5+dfsg-3.debian.tar.xz Checksums-Sha256: ba9b53ebaff1d2432b0a601bb452934a9365eb323f1ea2007269c603dc94f842 3788780 biojava-live_1.9.5+dfsg.orig.tar.xz dbdf4447308df6fa5003e8ee09ef18c10b0e98acdbebe64013b57bbd9574a11f 10492 biojava-live_1.9.5+dfsg-3.debian.tar.xz Files: 9f802fd72cd53046a7e9db293d012bc9 3788780 biojava-live_1.9.5+dfsg.orig.tar.xz 0ab44433622d451ddd20caafb7836a80 10492 biojava-live_1.9.5+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEuM5N4hCA3PkD4WxA9RPEGeS50KwFAmReBIkSHGVib3VyZ0Bh cGFjaGUub3JnAAoJEPUTxBnkudCs390P/jGGdMpeMSlTclX/sWsudK+uOshO+n5c Pfu13PYnAVsB5Nt1LtPijGSY6QKB93zmzTiwpE1EsgQ/e+dWZMZlUWXcXnP3GIxq qALl+WBs9Jz3IJUit8ohIWO3Ns9U8o+k82GJbw/fdAycAjV94f6pYPa/VhEwUXSl A7m7cleqKo455t3PDFN2NpbTJ60DYSd/3HRnRjZN1Y75KoffRb6KN0TONUk9xfIH jq+EJP4ZcUp0UbK+m9wvMutbL89wRodWGa0mM/U/PfUnEX1WU6kvt9uxbf+W7wGt 3d8HWC2/HySTz0hHQGD6rsz2moo8WmPOvKPoXYYmiMpQ3nAyDTVmQBqeF47yc6cT /Xu1+sEmhn9RdUTiAUSLgGSqvg55WaKqSzeUJukTeHan3xhPBds+CTzGyp+c5688 94uzwBSwV9hASB6ZW0Z1EvJKlUR+cuWs/dy1jN9h84nBCDI9y6iRudtZmRro/6G+ DP/IkRU3LxP2nQCPdydnI7skThwQiB+2ojD0AVFSYj+0LUE+JU6Vjpq7bo+NF0vd EmZIXTzFMb6Bhmm4/rI9Iq0tmZwO+Y8SkZgowIfghGA8lUYkHdYL8Jz4g8VsvSiY buR6JtFgYhmbPv8k78wRTPnY9B6u2SLKkCpE7Nl1qyCM91ERgsJBhuqTmyZwd0Oq v5T82DdmA7yG =Vx5k -----END PGP SIGNATURE----- Sun Jan 14 23:33:19 UTC 2024 I: Checking whether the package is not for us Sun Jan 14 23:33:19 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Sun Jan 14 23:33:19 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sun Jan 14 23:37:55 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 15 17:56:19 -12 2025 I: pbuilder-time-stamp: 1739685379 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [biojava-live_1.9.5+dfsg-3.dsc] I: copying [./biojava-live_1.9.5+dfsg.orig.tar.xz] I: copying [./biojava-live_1.9.5+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri May 12 09:19:05 2023 gpgv: using RSA key B8CE4DE21080DCF903E16C40F513C419E4B9D0AC gpgv: issuer "ebourg@apache.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biojava-live_1.9.5+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting biojava-live in biojava-live-1.9.5+dfsg dpkg-source: info: unpacking biojava-live_1.9.5+dfsg.orig.tar.xz dpkg-source: info: unpacking biojava-live_1.9.5+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying omit_tests_with_problematic_data.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/118678/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9b36e77884a44500bac2a068c33cac50' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='118678' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/pbuilderrc_nJwY --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/b1 --logfile b1/build.log biojava-live_1.9.5+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 23 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 23 2023 more -rwsr-xr-x 1 root root 58912 Mar 23 2023 mount -rwxr-xr-x 1 root root 13856 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 23 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 23 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/118678/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), maven-debian-helper, default-jdk, junit4, libcommons-dbcp-java, libjaxb-api-java, libjgrapht0.8-java, libjgrapht0.8-java-doc, libmaven-javadoc-plugin-java, libxerces2-java dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on maven-debian-helper; however: Package maven-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-dbcp-java; however: Package libcommons-dbcp-java is not installed. pbuilder-satisfydepends-dummy depends on libjaxb-api-java; however: Package libjaxb-api-java is not installed. pbuilder-satisfydepends-dummy depends on libjgrapht0.8-java; however: Package libjgrapht0.8-java is not installed. pbuilder-satisfydepends-dummy depends on libjgrapht0.8-java-doc; however: Package libjgrapht0.8-java-doc is not installed. pbuilder-satisfydepends-dummy depends on libmaven-javadoc-plugin-java; however: Package libmaven-javadoc-plugin-java is not installed. pbuilder-satisfydepends-dummy depends on libxerces2-java; however: Package libxerces2-java is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} junit4{a} junit5{a} libactivation-java{a} libaopalliance-java{a} libapache-pom-java{a} libapiguardian-java{a} libarchive-zip-perl{a} libasm-java{a} libasound2{a} libasound2-data{a} libatinject-jsr330-api-java{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbatik-java{a} libbrotli1{a} libbsd0{a} libbsh-java{a} libcairo2{a} libcdi-api-java{a} libcommons-beanutils-java{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-digester-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcommons-text-java{a} libcommons-validator-java{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdom4j-java{a} libdoxia-core-java{a} libdoxia-java{a} libdoxia-sitetools-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libel-api-java{a} libelf1{a} liberror-prone-java{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox2-java{a} libfontconfig1{a} libfop-java{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libitext1-java{a} libjansi-java{a} libjaxb-api-java{a} libjaxen-java{a} libjaxp1.3-java{a} libjbig0{a} libjetty9-java{a} libjgraph-java{a} libjgrapht0.8-java{a} libjgrapht0.8-java-doc{a} libjpeg62-turbo{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjtidy-java{a} liblcms2-2{a} liblerc4{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libmaven-archiver-java{a} libmaven-artifact-transfer-java{a} libmaven-clean-plugin-java{a} libmaven-common-artifact-filters-java{a} libmaven-compiler-plugin-java{a} libmaven-file-management-java{a} libmaven-filtering-java{a} libmaven-invoker-java{a} libmaven-jar-plugin-java{a} libmaven-javadoc-plugin-java{a} libmaven-parent-java{a} libmaven-plugin-tools-java{a} libmaven-reporting-api-java{a} libmaven-reporting-exec-java{a} libmaven-reporting-impl-java{a} libmaven-resolver-java{a} libmaven-resources-plugin-java{a} libmaven-shared-incremental-java{a} libmaven-shared-io-java{a} libmaven-shared-utils-java{a} libmaven-site-plugin-java{a} libmaven3-core-java{a} libnspr4{a} libnss3{a} libopentest4j-java{a} libopentest4j-reporting-java{a} liboro-java{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcsclite1{a} libpicocli-java{a} libpipeline1{a} libpixman-1-0{a} libplexus-ant-factory-java{a} libplexus-archiver-java{a} libplexus-bsh-factory-java{a} libplexus-build-api-java{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-compiler-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-container-default1.5-java{a} libplexus-i18n-java{a} libplexus-interactivity-api-java{a} libplexus-interpolation-java{a} libplexus-io-java{a} libplexus-languages-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libplexus-velocity-java{a} libpng16-16{a} libproc2-0{a} libqdox-java{a} libqdox2-java{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libsub-override-perl{a} libsurefire-java{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libunivocity-parsers-java{a} libvelocity-tools-java{a} libwagon-file-java{a} libwagon-http-shaded-java{a} libwagon-provider-api-java{a} libwebp7{a} libwebsocket-api-java{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxml2-utils{a} libxmlgraphics-commons-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libz3-4{a} m4{a} man-db{a} maven{a} maven-debian-helper{a} maven-repo-helper{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} unzip{a} velocity{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ant-optional curl dbus fonts-dejavu-extra icc-profiles-free libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgtk2.0-bin libltdl-dev libmail-sendmail-perl librsvg2-common libsaxon-java libxt-dev lynx psmisc wget xdg-user-dirs 0 packages upgraded, 270 newly installed, 0 to remove and 0 not upgraded. Need to get 267 MB of archives. After unpacking 717 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 openssl i386 3.0.11-1~deb12u2 [1423 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 ca-certificates all 20230311 [153 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf2.0-common all 2.42.10+dfsg-1 [306 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.3~deb12u1 [720 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 shared-mime-info i386 2.2-1 [730 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.2+deb12u1 [294 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-6+deb12u1 [332 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libgdk-pixbuf-2.0-0 i386 2.42.10+dfsg-1+b1 [147 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 gtk-update-icon-cache i386 3.24.38-2~deb12u1 [44.6 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 adwaita-icon-theme all 43-1 [5124 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 ca-certificates-java all 20230710~deb12u1 [11.9 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 java-common all 0.74 [6388 B] Get: 34 http://deb.debian.org/debian bookworm/main i386 libavahi-common-data i386 0.8-10 [107 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libavahi-common3 i386 0.8-10 [43.5 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libdbus-1-3 i386 1.14.10-1~deb12u1 [215 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 libavahi-client3 i386 0.8-10 [47.6 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libcups2 i386 2.4.2-3+deb12u5 [262 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 libnspr4 i386 2:4.35-1 [123 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libnss3 i386 2:3.87.1-1 [1439 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libasound2-data all 1.2.8-1 [20.5 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libasound2 i386 1.2.8-1+b1 [388 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libpcsclite1 i386 1.9.9-2 [50.9 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jre-headless i386 17.0.9+9-1~deb12u1 [42.6 MB] Get: 54 http://deb.debian.org/debian bookworm/main i386 default-jre-headless i386 2:1.17-74 [2932 B] Get: 55 http://deb.debian.org/debian bookworm/main i386 ant all 1.10.13-1 [2161 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 at-spi2-common all 2.46.0-5 [162 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 67 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 69 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libgtk2.0-common all 2.24.33-2 [2700 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libatk1.0-0 i386 2.46.0-5 [49.4 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2+deb12u2 [782 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 fontconfig i386 2.14.1-4 [450 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libthai-data all 0.1.29-1 [176 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libdatrie1 i386 0.2.13-2+b1 [45.0 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libthai0 i386 0.1.29-1 [58.6 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libpango-1.0-0 i386 1.50.12+ds-1 [220 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 libpangoft2-1.0-0 i386 1.50.12+ds-1 [50.5 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libpangocairo-1.0-0 i386 1.50.12+ds-1 [35.4 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libxcomposite1 i386 1:0.4.5-1 [16.9 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libxcursor1 i386 1:1.2.1-1 [42.4 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libxdamage1 i386 1:1.1.6-1 [15.3 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libxinerama1 i386 2:1.1.4-3 [18.1 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libxrandr2 i386 2:1.5.2-2+b1 [40.8 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libgtk2.0-0 i386 2.24.33-2 [1970 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libglvnd0 i386 1.6.0-1 [42.7 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libdrm-common all 2.4.114-1 [7112 B] Get: 107 http://deb.debian.org/debian bookworm/main i386 libdrm2 i386 2.4.114-1+b1 [40.8 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libglapi-mesa i386 22.3.6-1+deb12u1 [35.6 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libx11-xcb1 i386 2:1.8.4-2+deb12u2 [192 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libxcb-glx0 i386 1.15-1 [124 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libxcb-present0 i386 1.15-1 [106 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 libxcb-randr0 i386 1.15-1 [118 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libxcb-sync1 i386 1.15-1 [109 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 118 http://deb.debian.org/debian bookworm/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libdrm-amdgpu1 i386 2.4.114-1+b1 [24.1 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libpciaccess0 i386 0.17-2 [53.4 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libdrm-intel1 i386 2.4.114-1+b1 [67.9 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libdrm-nouveau2 i386 2.4.114-1+b1 [20.7 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libdrm-radeon1 i386 2.4.114-1+b1 [22.8 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libedit2 i386 3.1-20221030-2 [97.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libz3-4 i386 4.8.12-3.1 [7853 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 libllvm15 i386 1:15.0.6-4+b1 [26.5 MB] Get: 127 http://deb.debian.org/debian bookworm/main i386 libsensors-config all 1:3.6.0-7.1 [14.3 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 libsensors5 i386 1:3.6.0-7.1 [35.1 kB] Get: 129 http://deb.debian.org/debian bookworm/main i386 libgl1-mesa-dri i386 22.3.6-1+deb12u1 [7417 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 libglx-mesa0 i386 22.3.6-1+deb12u1 [156 kB] Get: 131 http://deb.debian.org/debian bookworm/main i386 libglx0 i386 1.6.0-1 [36.6 kB] Get: 132 http://deb.debian.org/debian bookworm/main i386 libgl1 i386 1.6.0-1 [82.1 kB] Get: 133 http://deb.debian.org/debian bookworm/main i386 libgif7 i386 5.2.1-2.5 [48.3 kB] Get: 134 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 135 http://deb.debian.org/debian bookworm/main i386 libxtst6 i386 2:1.2.3-1.1 [28.6 kB] Get: 136 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jre i386 17.0.9+9-1~deb12u1 [184 kB] Get: 137 http://deb.debian.org/debian bookworm/main i386 default-jre i386 2:1.17-74 [1056 B] Get: 138 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jdk-headless i386 17.0.9+9-1~deb12u1 [73.9 MB] Get: 139 http://deb.debian.org/debian bookworm/main i386 default-jdk-headless i386 2:1.17-74 [1108 B] Get: 140 http://deb.debian.org/debian bookworm/main i386 openjdk-17-jdk i386 17.0.9+9-1~deb12u1 [2797 kB] Get: 141 http://deb.debian.org/debian bookworm/main i386 default-jdk i386 2:1.17-74 [1068 B] Get: 142 http://deb.debian.org/debian bookworm/main i386 unzip i386 6.0-28 [166 kB] Get: 143 http://deb.debian.org/debian bookworm/main i386 java-wrappers all 0.4 [8916 B] Get: 144 http://deb.debian.org/debian bookworm/main i386 libhamcrest-java all 2.2-1 [121 kB] Get: 145 http://deb.debian.org/debian bookworm/main i386 junit4 all 4.13.2-3 [348 kB] Get: 146 http://deb.debian.org/debian bookworm/main i386 libapiguardian-java all 1.1.2-1 [4656 B] Get: 147 http://deb.debian.org/debian bookworm/main i386 libopentest4j-java all 1.2.0-4 [9516 B] Get: 148 http://deb.debian.org/debian bookworm/main i386 libopentest4j-reporting-java all 0.1.0-M1-2 [49.0 kB] Get: 149 http://deb.debian.org/debian bookworm/main i386 libpicocli-java all 4.6.2-2 [390 kB] Get: 150 http://deb.debian.org/debian bookworm/main i386 libunivocity-parsers-java all 2.9.1-1 [397 kB] Get: 151 http://deb.debian.org/debian bookworm/main i386 junit5 all 5.9.2-1 [2398 kB] Get: 152 http://deb.debian.org/debian bookworm/main i386 libactivation-java all 1.2.0-2 [84.7 kB] Get: 153 http://deb.debian.org/debian bookworm/main i386 libaopalliance-java all 20070526-7 [8572 B] Get: 154 http://deb.debian.org/debian bookworm/main i386 libapache-pom-java all 29-2 [5276 B] Get: 155 http://deb.debian.org/debian bookworm/main i386 libasm-java all 9.4-1 [389 kB] Get: 156 http://deb.debian.org/debian bookworm/main i386 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 157 http://deb.debian.org/debian bookworm/main i386 libjaxp1.3-java all 1.3.05-6 [227 kB] Get: 158 http://deb.debian.org/debian bookworm/main i386 libxml-commons-external-java all 1.4.01-5 [240 kB] Get: 159 http://deb.debian.org/debian bookworm/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 160 http://deb.debian.org/debian bookworm/main i386 libcommons-io-java all 2.11.0-2 [319 kB] Get: 161 http://deb.debian.org/debian bookworm/main i386 libcommons-logging-java all 1.2-3 [62.4 kB] Get: 162 http://deb.debian.org/debian bookworm/main i386 libxmlgraphics-commons-java all 2.8-2 [623 kB] Get: 163 http://deb.debian.org/debian bookworm/main i386 libbatik-java all 1.16+dfsg-1+deb12u1 [3949 kB] Get: 164 http://deb.debian.org/debian bookworm/main i386 libbsh-java all 2.0b4-20 [291 kB] Get: 165 http://deb.debian.org/debian bookworm/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 166 http://deb.debian.org/debian bookworm/main i386 libcdi-api-java all 1.2-3 [54.3 kB] Get: 167 http://deb.debian.org/debian bookworm/main i386 libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 168 http://deb.debian.org/debian bookworm/main i386 libcommons-beanutils-java all 1.9.4-1 [232 kB] Get: 169 http://deb.debian.org/debian bookworm/main i386 libcommons-cli-java all 1.5.0-1 [60.0 kB] Get: 170 http://deb.debian.org/debian bookworm/main i386 libcommons-codec-java all 1.15-1 [292 kB] Get: 171 http://deb.debian.org/debian bookworm/main i386 libcommons-compress-java all 1.22-1 [615 kB] Get: 172 http://deb.debian.org/debian bookworm/main i386 libcommons-lang-java all 2.6-10 [273 kB] Get: 173 http://deb.debian.org/debian bookworm/main i386 libcommons-configuration-java all 1.10-6 [347 kB] Get: 174 http://deb.debian.org/debian bookworm/main i386 libcommons-pool-java all 1.6-4 [109 kB] Get: 175 http://deb.debian.org/debian bookworm/main i386 libcommons-dbcp-java all 1.4-8 [157 kB] Get: 176 http://deb.debian.org/debian bookworm/main i386 libcommons-digester-java all 1.8.1-5 [168 kB] Get: 177 http://deb.debian.org/debian bookworm/main i386 libcommons-lang3-java all 3.12.0-2 [561 kB] Get: 178 http://deb.debian.org/debian bookworm/main i386 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 179 http://deb.debian.org/debian bookworm/main i386 libplexus-io-java all 3.3.1-2 [65.3 kB] Get: 180 http://deb.debian.org/debian bookworm/main i386 libslf4j-java all 1.7.32-1 [144 kB] Get: 181 http://deb.debian.org/debian bookworm/main i386 libsnappy1v5 i386 1.1.9-3 [27.7 kB] Get: 182 http://deb.debian.org/debian bookworm/main i386 libsnappy-jni i386 1.1.8.3-1 [7384 B] Get: 183 http://deb.debian.org/debian bookworm/main i386 libsnappy-java all 1.1.8.3-1 [98.9 kB] Get: 184 http://deb.debian.org/debian bookworm/main i386 libxz-java all 1.9-1 [143 kB] Get: 185 http://deb.debian.org/debian bookworm/main i386 libplexus-archiver-java all 4.6.1-1 [187 kB] Get: 186 http://deb.debian.org/debian bookworm/main i386 libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 187 http://deb.debian.org/debian bookworm/main i386 libmaven-archiver-java all 3.6.0-1 [25.1 kB] Get: 188 http://deb.debian.org/debian bookworm/main i386 libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get: 189 http://deb.debian.org/debian bookworm/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 190 http://deb.debian.org/debian bookworm/main i386 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 191 http://deb.debian.org/debian bookworm/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 192 http://deb.debian.org/debian bookworm/main i386 libguava-java all 31.1-1 [2613 kB] Get: 193 http://deb.debian.org/debian bookworm/main i386 libguice-java all 4.2.3-2 [1435 kB] Get: 194 http://deb.debian.org/debian bookworm/main i386 libmaven-parent-java all 35-1 [6140 B] Get: 195 http://deb.debian.org/debian bookworm/main i386 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 196 http://deb.debian.org/debian bookworm/main i386 libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 197 http://deb.debian.org/debian bookworm/main i386 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 198 http://deb.debian.org/debian bookworm/main i386 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 199 http://deb.debian.org/debian bookworm/main i386 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 200 http://deb.debian.org/debian bookworm/main i386 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 201 http://deb.debian.org/debian bookworm/main i386 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 202 http://deb.debian.org/debian bookworm/main i386 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 203 http://deb.debian.org/debian bookworm/main i386 libmaven3-core-java all 3.8.7-1 [1572 kB] Get: 204 http://deb.debian.org/debian bookworm/main i386 libmaven-shared-io-java all 3.0.0-4 [33.2 kB] Get: 205 http://deb.debian.org/debian bookworm/main i386 libmaven-file-management-java all 3.0.0-1 [35.1 kB] Get: 206 http://deb.debian.org/debian bookworm/main i386 libmaven-jar-plugin-java all 3.3.0-2 [24.0 kB] Get: 207 http://deb.debian.org/debian bookworm/main i386 libcommons-text-java all 1.10.0-1 [211 kB] Get: 208 http://deb.debian.org/debian bookworm/main i386 libcommons-validator-java all 1:1.7-1 [181 kB] Get: 209 http://deb.debian.org/debian bookworm/main i386 libjaxen-java all 1.1.6-4 [214 kB] Get: 210 http://deb.debian.org/debian bookworm/main i386 libdom4j-java all 2.1.3-2 [310 kB] Get: 211 http://deb.debian.org/debian bookworm/main i386 libhttpcore-java all 4.4.16-1 [636 kB] Get: 212 http://deb.debian.org/debian bookworm/main i386 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 213 http://deb.debian.org/debian bookworm/main i386 libdoxia-core-java all 1.12.0-1 [213 kB] Get: 214 http://deb.debian.org/debian bookworm/main i386 libfontbox2-java all 2.0.27-2 [1510 kB] Get: 215 http://deb.debian.org/debian bookworm/main i386 libqdox-java all 1.12.1-3 [172 kB] Get: 216 http://deb.debian.org/debian bookworm/main i386 libfop-java all 1:2.8-2 [10.1 MB] Get: 217 http://deb.debian.org/debian bookworm/main i386 libitext1-java all 1.4-7 [1257 kB] Get: 218 http://deb.debian.org/debian bookworm/main i386 libxbean-reflect-java all 4.5-8 [133 kB] Get: 219 http://deb.debian.org/debian bookworm/main i386 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 220 http://deb.debian.org/debian bookworm/main i386 libdoxia-java all 1.12.0-1 [459 kB] Get: 221 http://deb.debian.org/debian bookworm/main i386 libmaven-reporting-api-java all 3.1.1-1 [7240 B] Get: 222 http://deb.debian.org/debian bookworm/main i386 libplexus-i18n-java all 1.0-beta-10-6 [13.4 kB] Get: 223 http://deb.debian.org/debian bookworm/main i386 velocity all 1.7-6 [429 kB] Get: 224 http://deb.debian.org/debian bookworm/main i386 libplexus-velocity-java all 1.2-3.1 [10.5 kB] Get: 225 http://deb.debian.org/debian bookworm/main i386 liboro-java all 2.0.8a-14 [70.5 kB] Get: 226 http://deb.debian.org/debian bookworm/main i386 libvelocity-tools-java all 2.0-8 [308 kB] Get: 227 http://deb.debian.org/debian bookworm/main i386 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 228 http://deb.debian.org/debian bookworm/main i386 libxerces2-java all 2.12.2-1 [1440 kB] Get: 229 http://deb.debian.org/debian bookworm/main i386 libxalan2-java all 2.7.2-4 [3419 kB] Get: 230 http://deb.debian.org/debian bookworm/main i386 libdoxia-sitetools-java all 1.11.1-1 [202 kB] Get: 231 http://deb.debian.org/debian bookworm/main i386 libel-api-java all 3.0.0-3 [64.9 kB] Get: 232 http://deb.debian.org/debian bookworm/main i386 libjansi-java all 2.4.0-2 [105 kB] Get: 233 http://deb.debian.org/debian bookworm/main i386 libjaxb-api-java all 2.3.1-1 [119 kB] Get: 234 http://deb.debian.org/debian bookworm/main i386 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 235 http://deb.debian.org/debian bookworm/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 236 http://deb.debian.org/debian bookworm/main i386 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 237 http://deb.debian.org/debian bookworm/main i386 libjetty9-java all 9.4.50-4+deb12u2 [2981 kB] Get: 238 http://deb.debian.org/debian bookworm/main i386 libjgraph-java all 5.12.4.2+dfsg-7 [207 kB] Get: 239 http://deb.debian.org/debian bookworm/main i386 libjgrapht0.8-java all 0.8.3-6 [214 kB] Get: 240 http://deb.debian.org/debian bookworm/main i386 libjgrapht0.8-java-doc all 0.8.3-6 [379 kB] Get: 241 http://deb.debian.org/debian bookworm/main i386 libjsoup-java all 1.15.3-1 [431 kB] Get: 242 http://deb.debian.org/debian bookworm/main i386 libjtidy-java all 7+svn20110807-5 [250 kB] Get: 243 http://deb.debian.org/debian bookworm/main i386 libmaven-common-artifact-filters-java all 3.3.2-1 [48.2 kB] Get: 244 http://deb.debian.org/debian bookworm/main i386 libmaven-artifact-transfer-java all 0.13.1-2 [158 kB] Get: 245 http://deb.debian.org/debian bookworm/main i386 libmaven-clean-plugin-java all 3.2.0-2 [32.2 kB] Get: 246 http://deb.debian.org/debian bookworm/main i386 libmaven-shared-incremental-java all 1.1-3 [9524 B] Get: 247 http://deb.debian.org/debian bookworm/main i386 libplexus-compiler-java all 2.12.1-1 [99.8 kB] Get: 248 http://deb.debian.org/debian bookworm/main i386 libqdox2-java all 2.0.3-1 [296 kB] Get: 249 http://deb.debian.org/debian bookworm/main i386 libplexus-languages-java all 1.1.1-2 [47.3 kB] Get: 250 http://deb.debian.org/debian bookworm/main i386 libmaven-compiler-plugin-java all 3.10.1-2 [59.0 kB] Get: 251 http://deb.debian.org/debian bookworm/main i386 libplexus-build-api-java all 0.0.7-4 [10.3 kB] Get: 252 http://deb.debian.org/debian bookworm/main i386 libmaven-filtering-java all 3.3.0-1 [50.2 kB] Get: 253 http://deb.debian.org/debian bookworm/main i386 libmaven-invoker-java all 3.2.0-1 [28.1 kB] Get: 254 http://deb.debian.org/debian bookworm/main i386 libplexus-interactivity-api-java all 1.1-2 [11.0 kB] Get: 255 http://deb.debian.org/debian bookworm/main i386 libmaven-javadoc-plugin-java all 3.4.1-2 [454 kB] Get: 256 http://deb.debian.org/debian bookworm/main i386 libmaven-reporting-impl-java all 3.2.0-2 [15.2 kB] Get: 257 http://deb.debian.org/debian bookworm/main i386 libplexus-container-default1.5-java all 2.1.1-1 [4476 B] Get: 258 http://deb.debian.org/debian bookworm/main i386 libplexus-ant-factory-java all 1.0~alpha2.1-4 [11.4 kB] Get: 259 http://deb.debian.org/debian bookworm/main i386 libplexus-bsh-factory-java all 1.0~alpha7-5 [8360 B] Get: 260 http://deb.debian.org/debian bookworm/main i386 libmaven-plugin-tools-java all 3.7.1-1 [265 kB] Get: 261 http://deb.debian.org/debian bookworm/main i386 libmaven-reporting-exec-java all 1.6.0-1 [26.8 kB] Get: 262 http://deb.debian.org/debian bookworm/main i386 libmaven-resources-plugin-java all 3.3.0-1 [28.4 kB] Get: 263 http://deb.debian.org/debian bookworm/main i386 libmaven-site-plugin-java all 3.12.1-2 [107 kB] Get: 264 http://deb.debian.org/debian bookworm/main i386 libsurefire-java all 2.22.3-2 [1169 kB] Get: 265 http://deb.debian.org/debian bookworm/main i386 libwagon-file-java all 3.5.3-1 [8388 B] Get: 266 http://deb.debian.org/debian bookworm/main i386 libwagon-http-shaded-java all 3.5.3-1 [1341 kB] Get: 267 http://deb.debian.org/debian bookworm/main i386 libxml2-utils i386 2.9.14+dfsg-1.3~deb12u1 [99.1 kB] Get: 268 http://deb.debian.org/debian bookworm/main i386 maven all 3.8.7-1 [18.9 kB] Get: 269 http://deb.debian.org/debian bookworm/main i386 maven-repo-helper all 1.11 [142 kB] Get: 270 http://deb.debian.org/debian bookworm/main i386 maven-debian-helper all 2.6.3 [108 kB] Fetched 267 MB in 5s (55.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sgml-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18156 files and directories currently installed.) Preparing to unpack .../000-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.0.11-1~deb12u2_i386.deb ... Unpacking openssl (3.0.11-1~deb12u2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../007-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../010-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../013-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../015-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../016-libgdk-pixbuf2.0-common_2.42.10+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../017-libglib2.0-0_2.74.6-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.74.6-2) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../018-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../019-libxml2_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../020-shared-mime-info_2.2-1_i386.deb ... Unpacking shared-mime-info (2.2-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../021-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../022-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../023-libdeflate0_1.14-1_i386.deb ... Unpacking libdeflate0:i386 (1.14-1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../024-libjbig0_2.1-6.1_i386.deb ... Unpacking libjbig0:i386 (2.1-6.1) ... Selecting previously unselected package liblerc4:i386. Preparing to unpack .../025-liblerc4_4.0.0+ds-2_i386.deb ... Unpacking liblerc4:i386 (4.0.0+ds-2) ... Selecting previously unselected package libwebp7:i386. Preparing to unpack .../026-libwebp7_1.2.4-0.2+deb12u1_i386.deb ... Unpacking libwebp7:i386 (1.2.4-0.2+deb12u1) ... Selecting previously unselected package libtiff6:i386. Preparing to unpack .../027-libtiff6_4.5.0-6+deb12u1_i386.deb ... Unpacking libtiff6:i386 (4.5.0-6+deb12u1) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:i386. Preparing to unpack .../028-libgdk-pixbuf-2.0-0_2.42.10+dfsg-1+b1_i386.deb ... Unpacking libgdk-pixbuf-2.0-0:i386 (2.42.10+dfsg-1+b1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../029-gtk-update-icon-cache_3.24.38-2~deb12u1_i386.deb ... Unpacking gtk-update-icon-cache (3.24.38-2~deb12u1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../030-adwaita-icon-theme_43-1_all.deb ... Unpacking adwaita-icon-theme (43-1) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../031-ca-certificates-java_20230710~deb12u1_all.deb ... Unpacking ca-certificates-java (20230710~deb12u1) ... Selecting previously unselected package java-common. Preparing to unpack .../032-java-common_0.74_all.deb ... Unpacking java-common (0.74) ... Selecting previously unselected package libavahi-common-data:i386. Preparing to unpack .../033-libavahi-common-data_0.8-10_i386.deb ... Unpacking libavahi-common-data:i386 (0.8-10) ... Selecting previously unselected package libavahi-common3:i386. Preparing to unpack .../034-libavahi-common3_0.8-10_i386.deb ... Unpacking libavahi-common3:i386 (0.8-10) ... Selecting previously unselected package libdbus-1-3:i386. Preparing to unpack .../035-libdbus-1-3_1.14.10-1~deb12u1_i386.deb ... Unpacking libdbus-1-3:i386 (1.14.10-1~deb12u1) ... Selecting previously unselected package libavahi-client3:i386. Preparing to unpack .../036-libavahi-client3_0.8-10_i386.deb ... Unpacking libavahi-client3:i386 (0.8-10) ... Selecting previously unselected package libcups2:i386. Preparing to unpack .../037-libcups2_2.4.2-3+deb12u5_i386.deb ... Unpacking libcups2:i386 (2.4.2-3+deb12u5) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../038-liblcms2-2_2.14-2_i386.deb ... Unpacking liblcms2-2:i386 (2.14-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../039-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../040-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../041-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../042-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../043-fontconfig-config_2.14.1-4_i386.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../044-libfontconfig1_2.14.1-4_i386.deb ... Unpacking libfontconfig1:i386 (2.14.1-4) ... Selecting previously unselected package libnspr4:i386. Preparing to unpack .../045-libnspr4_2%3a4.35-1_i386.deb ... Unpacking libnspr4:i386 (2:4.35-1) ... Selecting previously unselected package libnss3:i386. Preparing to unpack .../046-libnss3_2%3a3.87.1-1_i386.deb ... Unpacking libnss3:i386 (2:3.87.1-1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../047-libasound2-data_1.2.8-1_all.deb ... Unpacking libasound2-data (1.2.8-1) ... Selecting previously unselected package libasound2:i386. Preparing to unpack .../048-libasound2_1.2.8-1+b1_i386.deb ... Unpacking libasound2:i386 (1.2.8-1+b1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../049-libgraphite2-3_1.3.14-1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../050-libharfbuzz0b_6.0.0+dfsg-3_i386.deb ... Unpacking libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Selecting previously unselected package libpcsclite1:i386. Preparing to unpack .../051-libpcsclite1_1.9.9-2_i386.deb ... Unpacking libpcsclite1:i386 (1.9.9-2) ... Selecting previously unselected package openjdk-17-jre-headless:i386. Preparing to unpack .../052-openjdk-17-jre-headless_17.0.9+9-1~deb12u1_i386.deb ... Unpacking openjdk-17-jre-headless:i386 (17.0.9+9-1~deb12u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../053-default-jre-headless_2%3a1.17-74_i386.deb ... Unpacking default-jre-headless (2:1.17-74) ... Selecting previously unselected package ant. Preparing to unpack .../054-ant_1.10.13-1_all.deb ... Unpacking ant (1.10.13-1) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../055-at-spi2-common_2.46.0-5_all.deb ... Unpacking at-spi2-common (2.46.0-5) ... Selecting previously unselected package m4. Preparing to unpack .../056-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../057-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../058-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../059-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../060-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../061-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../062-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../063-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../064-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../065-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../066-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../067-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../068-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../069-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../070-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../071-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../072-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../073-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package libgtk2.0-common. Preparing to unpack .../074-libgtk2.0-common_2.24.33-2_all.deb ... Unpacking libgtk2.0-common (2.24.33-2) ... Selecting previously unselected package libatk1.0-0:i386. Preparing to unpack .../075-libatk1.0-0_2.46.0-5_i386.deb ... Unpacking libatk1.0-0:i386 (2.46.0-5) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../076-libpixman-1-0_0.42.2-1_i386.deb ... Unpacking libpixman-1-0:i386 (0.42.2-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../077-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../078-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../079-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../080-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../081-libx11-data_2%3a1.8.4-2+deb12u2_all.deb ... Unpacking libx11-data (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../082-libx11-6_2%3a1.8.4-2+deb12u2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../083-libxcb-render0_1.15-1_i386.deb ... Unpacking libxcb-render0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../084-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../085-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../086-libxrender1_1%3a0.9.10-1.1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../087-libcairo2_1.16.0-7_i386.deb ... Unpacking libcairo2:i386 (1.16.0-7) ... Selecting previously unselected package fontconfig. Preparing to unpack .../088-fontconfig_2.14.1-4_i386.deb ... Unpacking fontconfig (2.14.1-4) ... Selecting previously unselected package libfribidi0:i386. Preparing to unpack .../089-libfribidi0_1.0.8-2.1_i386.deb ... Unpacking libfribidi0:i386 (1.0.8-2.1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../090-libthai-data_0.1.29-1_all.deb ... Unpacking libthai-data (0.1.29-1) ... Selecting previously unselected package libdatrie1:i386. Preparing to unpack .../091-libdatrie1_0.2.13-2+b1_i386.deb ... Unpacking libdatrie1:i386 (0.2.13-2+b1) ... Selecting previously unselected package libthai0:i386. Preparing to unpack .../092-libthai0_0.1.29-1_i386.deb ... Unpacking libthai0:i386 (0.1.29-1) ... Selecting previously unselected package libpango-1.0-0:i386. Preparing to unpack .../093-libpango-1.0-0_1.50.12+ds-1_i386.deb ... Unpacking libpango-1.0-0:i386 (1.50.12+ds-1) ... Selecting previously unselected package libpangoft2-1.0-0:i386. Preparing to unpack .../094-libpangoft2-1.0-0_1.50.12+ds-1_i386.deb ... Unpacking libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Selecting previously unselected package libpangocairo-1.0-0:i386. Preparing to unpack .../095-libpangocairo-1.0-0_1.50.12+ds-1_i386.deb ... Unpacking libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Selecting previously unselected package libxcomposite1:i386. Preparing to unpack .../096-libxcomposite1_1%3a0.4.5-1_i386.deb ... Unpacking libxcomposite1:i386 (1:0.4.5-1) ... Selecting previously unselected package libxfixes3:i386. Preparing to unpack .../097-libxfixes3_1%3a6.0.0-2_i386.deb ... Unpacking libxfixes3:i386 (1:6.0.0-2) ... Selecting previously unselected package libxcursor1:i386. Preparing to unpack .../098-libxcursor1_1%3a1.2.1-1_i386.deb ... Unpacking libxcursor1:i386 (1:1.2.1-1) ... Selecting previously unselected package libxdamage1:i386. Preparing to unpack .../099-libxdamage1_1%3a1.1.6-1_i386.deb ... Unpacking libxdamage1:i386 (1:1.1.6-1) ... Selecting previously unselected package libxi6:i386. Preparing to unpack .../100-libxi6_2%3a1.8-1+b1_i386.deb ... Unpacking libxi6:i386 (2:1.8-1+b1) ... Selecting previously unselected package libxinerama1:i386. Preparing to unpack .../101-libxinerama1_2%3a1.1.4-3_i386.deb ... Unpacking libxinerama1:i386 (2:1.1.4-3) ... Selecting previously unselected package libxrandr2:i386. Preparing to unpack .../102-libxrandr2_2%3a1.5.2-2+b1_i386.deb ... Unpacking libxrandr2:i386 (2:1.5.2-2+b1) ... Selecting previously unselected package libgtk2.0-0:i386. Preparing to unpack .../103-libgtk2.0-0_2.24.33-2_i386.deb ... Unpacking libgtk2.0-0:i386 (2.24.33-2) ... Selecting previously unselected package libglvnd0:i386. Preparing to unpack .../104-libglvnd0_1.6.0-1_i386.deb ... Unpacking libglvnd0:i386 (1.6.0-1) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../105-libdrm-common_2.4.114-1_all.deb ... Unpacking libdrm-common (2.4.114-1) ... Selecting previously unselected package libdrm2:i386. Preparing to unpack .../106-libdrm2_2.4.114-1+b1_i386.deb ... Unpacking libdrm2:i386 (2.4.114-1+b1) ... Selecting previously unselected package libglapi-mesa:i386. Preparing to unpack .../107-libglapi-mesa_22.3.6-1+deb12u1_i386.deb ... Unpacking libglapi-mesa:i386 (22.3.6-1+deb12u1) ... Selecting previously unselected package libx11-xcb1:i386. Preparing to unpack .../108-libx11-xcb1_2%3a1.8.4-2+deb12u2_i386.deb ... Unpacking libx11-xcb1:i386 (2:1.8.4-2+deb12u2) ... Selecting previously unselected package libxcb-dri2-0:i386. Preparing to unpack .../109-libxcb-dri2-0_1.15-1_i386.deb ... Unpacking libxcb-dri2-0:i386 (1.15-1) ... Selecting previously unselected package libxcb-dri3-0:i386. Preparing to unpack .../110-libxcb-dri3-0_1.15-1_i386.deb ... Unpacking libxcb-dri3-0:i386 (1.15-1) ... Selecting previously unselected package libxcb-glx0:i386. Preparing to unpack .../111-libxcb-glx0_1.15-1_i386.deb ... Unpacking libxcb-glx0:i386 (1.15-1) ... Selecting previously unselected package libxcb-present0:i386. Preparing to unpack .../112-libxcb-present0_1.15-1_i386.deb ... Unpacking libxcb-present0:i386 (1.15-1) ... Selecting previously unselected package libxcb-randr0:i386. Preparing to unpack .../113-libxcb-randr0_1.15-1_i386.deb ... Unpacking libxcb-randr0:i386 (1.15-1) ... Selecting previously unselected package libxcb-sync1:i386. Preparing to unpack .../114-libxcb-sync1_1.15-1_i386.deb ... Unpacking libxcb-sync1:i386 (1.15-1) ... Selecting previously unselected package libxcb-xfixes0:i386. Preparing to unpack .../115-libxcb-xfixes0_1.15-1_i386.deb ... Unpacking libxcb-xfixes0:i386 (1.15-1) ... Selecting previously unselected package libxshmfence1:i386. Preparing to unpack .../116-libxshmfence1_1.3-1_i386.deb ... Unpacking libxshmfence1:i386 (1.3-1) ... Selecting previously unselected package libxxf86vm1:i386. Preparing to unpack .../117-libxxf86vm1_1%3a1.1.4-1+b2_i386.deb ... Unpacking libxxf86vm1:i386 (1:1.1.4-1+b2) ... Selecting previously unselected package libdrm-amdgpu1:i386. Preparing to unpack .../118-libdrm-amdgpu1_2.4.114-1+b1_i386.deb ... Unpacking libdrm-amdgpu1:i386 (2.4.114-1+b1) ... Selecting previously unselected package libpciaccess0:i386. Preparing to unpack .../119-libpciaccess0_0.17-2_i386.deb ... Unpacking libpciaccess0:i386 (0.17-2) ... Selecting previously unselected package libdrm-intel1:i386. Preparing to unpack .../120-libdrm-intel1_2.4.114-1+b1_i386.deb ... Unpacking libdrm-intel1:i386 (2.4.114-1+b1) ... Selecting previously unselected package libdrm-nouveau2:i386. Preparing to unpack .../121-libdrm-nouveau2_2.4.114-1+b1_i386.deb ... Unpacking libdrm-nouveau2:i386 (2.4.114-1+b1) ... Selecting previously unselected package libdrm-radeon1:i386. Preparing to unpack .../122-libdrm-radeon1_2.4.114-1+b1_i386.deb ... Unpacking libdrm-radeon1:i386 (2.4.114-1+b1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../123-libedit2_3.1-20221030-2_i386.deb ... Unpacking libedit2:i386 (3.1-20221030-2) ... Selecting previously unselected package libz3-4:i386. Preparing to unpack .../124-libz3-4_4.8.12-3.1_i386.deb ... Unpacking libz3-4:i386 (4.8.12-3.1) ... Selecting previously unselected package libllvm15:i386. Preparing to unpack .../125-libllvm15_1%3a15.0.6-4+b1_i386.deb ... Unpacking libllvm15:i386 (1:15.0.6-4+b1) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../126-libsensors-config_1%3a3.6.0-7.1_all.deb ... Unpacking libsensors-config (1:3.6.0-7.1) ... Selecting previously unselected package libsensors5:i386. Preparing to unpack .../127-libsensors5_1%3a3.6.0-7.1_i386.deb ... Unpacking libsensors5:i386 (1:3.6.0-7.1) ... Selecting previously unselected package libgl1-mesa-dri:i386. Preparing to unpack .../128-libgl1-mesa-dri_22.3.6-1+deb12u1_i386.deb ... Unpacking libgl1-mesa-dri:i386 (22.3.6-1+deb12u1) ... Selecting previously unselected package libglx-mesa0:i386. Preparing to unpack .../129-libglx-mesa0_22.3.6-1+deb12u1_i386.deb ... Unpacking libglx-mesa0:i386 (22.3.6-1+deb12u1) ... Selecting previously unselected package libglx0:i386. Preparing to unpack .../130-libglx0_1.6.0-1_i386.deb ... Unpacking libglx0:i386 (1.6.0-1) ... Selecting previously unselected package libgl1:i386. Preparing to unpack .../131-libgl1_1.6.0-1_i386.deb ... Unpacking libgl1:i386 (1.6.0-1) ... Selecting previously unselected package libgif7:i386. Preparing to unpack .../132-libgif7_5.2.1-2.5_i386.deb ... Unpacking libgif7:i386 (5.2.1-2.5) ... Selecting previously unselected package x11-common. Preparing to unpack .../133-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libxtst6:i386. Preparing to unpack .../134-libxtst6_2%3a1.2.3-1.1_i386.deb ... Unpacking libxtst6:i386 (2:1.2.3-1.1) ... Selecting previously unselected package openjdk-17-jre:i386. Preparing to unpack .../135-openjdk-17-jre_17.0.9+9-1~deb12u1_i386.deb ... Unpacking openjdk-17-jre:i386 (17.0.9+9-1~deb12u1) ... Selecting previously unselected package default-jre. Preparing to unpack .../136-default-jre_2%3a1.17-74_i386.deb ... Unpacking default-jre (2:1.17-74) ... Selecting previously unselected package openjdk-17-jdk-headless:i386. Preparing to unpack .../137-openjdk-17-jdk-headless_17.0.9+9-1~deb12u1_i386.deb ... Unpacking openjdk-17-jdk-headless:i386 (17.0.9+9-1~deb12u1) ... Selecting previously unselected package default-jdk-headless. Preparing to unpack .../138-default-jdk-headless_2%3a1.17-74_i386.deb ... Unpacking default-jdk-headless (2:1.17-74) ... Selecting previously unselected package openjdk-17-jdk:i386. Preparing to unpack .../139-openjdk-17-jdk_17.0.9+9-1~deb12u1_i386.deb ... Unpacking openjdk-17-jdk:i386 (17.0.9+9-1~deb12u1) ... Selecting previously unselected package default-jdk. Preparing to unpack .../140-default-jdk_2%3a1.17-74_i386.deb ... Unpacking default-jdk (2:1.17-74) ... Selecting previously unselected package unzip. Preparing to unpack .../141-unzip_6.0-28_i386.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package java-wrappers. Preparing to unpack .../142-java-wrappers_0.4_all.deb ... Unpacking java-wrappers (0.4) ... Selecting previously unselected package libhamcrest-java. Preparing to unpack .../143-libhamcrest-java_2.2-1_all.deb ... Unpacking libhamcrest-java (2.2-1) ... Selecting previously unselected package junit4. Preparing to unpack .../144-junit4_4.13.2-3_all.deb ... Unpacking junit4 (4.13.2-3) ... Selecting previously unselected package libapiguardian-java. Preparing to unpack .../145-libapiguardian-java_1.1.2-1_all.deb ... Unpacking libapiguardian-java (1.1.2-1) ... Selecting previously unselected package libopentest4j-java. Preparing to unpack .../146-libopentest4j-java_1.2.0-4_all.deb ... Unpacking libopentest4j-java (1.2.0-4) ... Selecting previously unselected package libopentest4j-reporting-java. Preparing to unpack .../147-libopentest4j-reporting-java_0.1.0-M1-2_all.deb ... Unpacking libopentest4j-reporting-java (0.1.0-M1-2) ... Selecting previously unselected package libpicocli-java. Preparing to unpack .../148-libpicocli-java_4.6.2-2_all.deb ... Unpacking libpicocli-java (4.6.2-2) ... Selecting previously unselected package libunivocity-parsers-java. Preparing to unpack .../149-libunivocity-parsers-java_2.9.1-1_all.deb ... Unpacking libunivocity-parsers-java (2.9.1-1) ... Selecting previously unselected package junit5. Preparing to unpack .../150-junit5_5.9.2-1_all.deb ... Unpacking junit5 (5.9.2-1) ... Selecting previously unselected package libactivation-java. Preparing to unpack .../151-libactivation-java_1.2.0-2_all.deb ... Unpacking libactivation-java (1.2.0-2) ... Selecting previously unselected package libaopalliance-java. Preparing to unpack .../152-libaopalliance-java_20070526-7_all.deb ... Unpacking libaopalliance-java (20070526-7) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../153-libapache-pom-java_29-2_all.deb ... Unpacking libapache-pom-java (29-2) ... Selecting previously unselected package libasm-java. Preparing to unpack .../154-libasm-java_9.4-1_all.deb ... Unpacking libasm-java (9.4-1) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../155-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libjaxp1.3-java. Preparing to unpack .../156-libjaxp1.3-java_1.3.05-6_all.deb ... Unpacking libjaxp1.3-java (1.3.05-6) ... Selecting previously unselected package libxml-commons-external-java. Preparing to unpack .../157-libxml-commons-external-java_1.4.01-5_all.deb ... Unpacking libxml-commons-external-java (1.4.01-5) ... Selecting previously unselected package libcommons-parent-java. Preparing to unpack .../158-libcommons-parent-java_56-1_all.deb ... Unpacking libcommons-parent-java (56-1) ... Selecting previously unselected package libcommons-io-java. Preparing to unpack .../159-libcommons-io-java_2.11.0-2_all.deb ... Unpacking libcommons-io-java (2.11.0-2) ... Selecting previously unselected package libcommons-logging-java. Preparing to unpack .../160-libcommons-logging-java_1.2-3_all.deb ... Unpacking libcommons-logging-java (1.2-3) ... Selecting previously unselected package libxmlgraphics-commons-java. Preparing to unpack .../161-libxmlgraphics-commons-java_2.8-2_all.deb ... Unpacking libxmlgraphics-commons-java (2.8-2) ... Selecting previously unselected package libbatik-java. Preparing to unpack .../162-libbatik-java_1.16+dfsg-1+deb12u1_all.deb ... Unpacking libbatik-java (1.16+dfsg-1+deb12u1) ... Selecting previously unselected package libbsh-java. Preparing to unpack .../163-libbsh-java_2.0b4-20_all.deb ... Unpacking libbsh-java (2.0b4-20) ... Selecting previously unselected package libgeronimo-interceptor-3.0-spec-java. Preparing to unpack .../164-libgeronimo-interceptor-3.0-spec-java_1.0.1-4_all.deb ... Unpacking libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Selecting previously unselected package libcdi-api-java. Preparing to unpack .../165-libcdi-api-java_1.2-3_all.deb ... Unpacking libcdi-api-java (1.2-3) ... Selecting previously unselected package libcommons-collections3-java. Preparing to unpack .../166-libcommons-collections3-java_3.2.2-2_all.deb ... Unpacking libcommons-collections3-java (3.2.2-2) ... Selecting previously unselected package libcommons-beanutils-java. Preparing to unpack .../167-libcommons-beanutils-java_1.9.4-1_all.deb ... Unpacking libcommons-beanutils-java (1.9.4-1) ... Selecting previously unselected package libcommons-cli-java. Preparing to unpack .../168-libcommons-cli-java_1.5.0-1_all.deb ... Unpacking libcommons-cli-java (1.5.0-1) ... Selecting previously unselected package libcommons-codec-java. Preparing to unpack .../169-libcommons-codec-java_1.15-1_all.deb ... Unpacking libcommons-codec-java (1.15-1) ... Selecting previously unselected package libcommons-compress-java. Preparing to unpack .../170-libcommons-compress-java_1.22-1_all.deb ... Unpacking libcommons-compress-java (1.22-1) ... Selecting previously unselected package libcommons-lang-java. Preparing to unpack .../171-libcommons-lang-java_2.6-10_all.deb ... Unpacking libcommons-lang-java (2.6-10) ... Selecting previously unselected package libcommons-configuration-java. Preparing to unpack .../172-libcommons-configuration-java_1.10-6_all.deb ... Unpacking libcommons-configuration-java (1.10-6) ... Selecting previously unselected package libcommons-pool-java. Preparing to unpack .../173-libcommons-pool-java_1.6-4_all.deb ... Unpacking libcommons-pool-java (1.6-4) ... Selecting previously unselected package libcommons-dbcp-java. Preparing to unpack .../174-libcommons-dbcp-java_1.4-8_all.deb ... Unpacking libcommons-dbcp-java (1.4-8) ... Selecting previously unselected package libcommons-digester-java. Preparing to unpack .../175-libcommons-digester-java_1.8.1-5_all.deb ... Unpacking libcommons-digester-java (1.8.1-5) ... Selecting previously unselected package libcommons-lang3-java. Preparing to unpack .../176-libcommons-lang3-java_3.12.0-2_all.deb ... Unpacking libcommons-lang3-java (3.12.0-2) ... Selecting previously unselected package libplexus-utils2-java. Preparing to unpack .../177-libplexus-utils2-java_3.4.2-1_all.deb ... Unpacking libplexus-utils2-java (3.4.2-1) ... Selecting previously unselected package libplexus-io-java. Preparing to unpack .../178-libplexus-io-java_3.3.1-2_all.deb ... Unpacking libplexus-io-java (3.3.1-2) ... Selecting previously unselected package libslf4j-java. Preparing to unpack .../179-libslf4j-java_1.7.32-1_all.deb ... Unpacking libslf4j-java (1.7.32-1) ... Selecting previously unselected package libsnappy1v5:i386. Preparing to unpack .../180-libsnappy1v5_1.1.9-3_i386.deb ... Unpacking libsnappy1v5:i386 (1.1.9-3) ... Selecting previously unselected package libsnappy-jni. Preparing to unpack .../181-libsnappy-jni_1.1.8.3-1_i386.deb ... Unpacking libsnappy-jni (1.1.8.3-1) ... Selecting previously unselected package libsnappy-java. Preparing to unpack .../182-libsnappy-java_1.1.8.3-1_all.deb ... Unpacking libsnappy-java (1.1.8.3-1) ... Selecting previously unselected package libxz-java. Preparing to unpack .../183-libxz-java_1.9-1_all.deb ... Unpacking libxz-java (1.9-1) ... Selecting previously unselected package libplexus-archiver-java. Preparing to unpack .../184-libplexus-archiver-java_4.6.1-1_all.deb ... Unpacking libplexus-archiver-java (4.6.1-1) ... Selecting previously unselected package libplexus-interpolation-java. Preparing to unpack .../185-libplexus-interpolation-java_1.26-1_all.deb ... Unpacking libplexus-interpolation-java (1.26-1) ... Selecting previously unselected package libmaven-archiver-java. Preparing to unpack .../186-libmaven-archiver-java_3.6.0-1_all.deb ... Unpacking libmaven-archiver-java (3.6.0-1) ... Selecting previously unselected package libmaven-shared-utils-java. Preparing to unpack .../187-libmaven-shared-utils-java_3.3.4-1_all.deb ... Unpacking libmaven-shared-utils-java (3.3.4-1) ... Selecting previously unselected package libgeronimo-annotation-1.3-spec-java. Preparing to unpack .../188-libgeronimo-annotation-1.3-spec-java_1.3-1_all.deb ... Unpacking libgeronimo-annotation-1.3-spec-java (1.3-1) ... Selecting previously unselected package liberror-prone-java. Preparing to unpack .../189-liberror-prone-java_2.18.0-1_all.deb ... Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libjsr305-java. Preparing to unpack .../190-libjsr305-java_0.1~+svn49-11_all.deb ... Unpacking libjsr305-java (0.1~+svn49-11) ... Selecting previously unselected package libguava-java. Preparing to unpack .../191-libguava-java_31.1-1_all.deb ... Unpacking libguava-java (31.1-1) ... Selecting previously unselected package libguice-java. Preparing to unpack .../192-libguice-java_4.2.3-2_all.deb ... Unpacking libguice-java (4.2.3-2) ... Selecting previously unselected package libmaven-parent-java. Preparing to unpack .../193-libmaven-parent-java_35-1_all.deb ... Unpacking libmaven-parent-java (35-1) ... Selecting previously unselected package libwagon-provider-api-java. Preparing to unpack .../194-libwagon-provider-api-java_3.5.3-1_all.deb ... Unpacking libwagon-provider-api-java (3.5.3-1) ... Selecting previously unselected package libmaven-resolver-java. Preparing to unpack .../195-libmaven-resolver-java_1.6.3-1_all.deb ... Unpacking libmaven-resolver-java (1.6.3-1) ... Selecting previously unselected package libplexus-cipher-java. Preparing to unpack .../196-libplexus-cipher-java_2.0-1_all.deb ... Unpacking libplexus-cipher-java (2.0-1) ... Selecting previously unselected package libplexus-classworlds-java. Preparing to unpack .../197-libplexus-classworlds-java_2.7.0-1_all.deb ... Unpacking libplexus-classworlds-java (2.7.0-1) ... Selecting previously unselected package libplexus-component-annotations-java. Preparing to unpack .../198-libplexus-component-annotations-java_2.1.1-1_all.deb ... Unpacking libplexus-component-annotations-java (2.1.1-1) ... Selecting previously unselected package libplexus-sec-dispatcher-java. Preparing to unpack .../199-libplexus-sec-dispatcher-java_2.0-3_all.deb ... Unpacking libplexus-sec-dispatcher-java (2.0-3) ... Selecting previously unselected package libsisu-inject-java. Preparing to unpack .../200-libsisu-inject-java_0.3.4-2_all.deb ... Unpacking libsisu-inject-java (0.3.4-2) ... Selecting previously unselected package libsisu-plexus-java. Preparing to unpack .../201-libsisu-plexus-java_0.3.4-3_all.deb ... Unpacking libsisu-plexus-java (0.3.4-3) ... Selecting previously unselected package libmaven3-core-java. Preparing to unpack .../202-libmaven3-core-java_3.8.7-1_all.deb ... Unpacking libmaven3-core-java (3.8.7-1) ... Selecting previously unselected package libmaven-shared-io-java. Preparing to unpack .../203-libmaven-shared-io-java_3.0.0-4_all.deb ... Unpacking libmaven-shared-io-java (3.0.0-4) ... Selecting previously unselected package libmaven-file-management-java. Preparing to unpack .../204-libmaven-file-management-java_3.0.0-1_all.deb ... Unpacking libmaven-file-management-java (3.0.0-1) ... Selecting previously unselected package libmaven-jar-plugin-java. Preparing to unpack .../205-libmaven-jar-plugin-java_3.3.0-2_all.deb ... Unpacking libmaven-jar-plugin-java (3.3.0-2) ... Selecting previously unselected package libcommons-text-java. Preparing to unpack .../206-libcommons-text-java_1.10.0-1_all.deb ... Unpacking libcommons-text-java (1.10.0-1) ... Selecting previously unselected package libcommons-validator-java. Preparing to unpack .../207-libcommons-validator-java_1%3a1.7-1_all.deb ... Unpacking libcommons-validator-java (1:1.7-1) ... Selecting previously unselected package libjaxen-java. Preparing to unpack .../208-libjaxen-java_1.1.6-4_all.deb ... Unpacking libjaxen-java (1.1.6-4) ... Selecting previously unselected package libdom4j-java. Preparing to unpack .../209-libdom4j-java_2.1.3-2_all.deb ... Unpacking libdom4j-java (2.1.3-2) ... Selecting previously unselected package libhttpcore-java. Preparing to unpack .../210-libhttpcore-java_4.4.16-1_all.deb ... Unpacking libhttpcore-java (4.4.16-1) ... Selecting previously unselected package libhttpclient-java. Preparing to unpack .../211-libhttpclient-java_4.5.14-1_all.deb ... Unpacking libhttpclient-java (4.5.14-1) ... Selecting previously unselected package libdoxia-core-java. Preparing to unpack .../212-libdoxia-core-java_1.12.0-1_all.deb ... Unpacking libdoxia-core-java (1.12.0-1) ... Selecting previously unselected package libfontbox2-java. Preparing to unpack .../213-libfontbox2-java_2.0.27-2_all.deb ... Unpacking libfontbox2-java (2.0.27-2) ... Selecting previously unselected package libqdox-java. Preparing to unpack .../214-libqdox-java_1.12.1-3_all.deb ... Unpacking libqdox-java (1.12.1-3) ... Selecting previously unselected package libfop-java. Preparing to unpack .../215-libfop-java_1%3a2.8-2_all.deb ... Unpacking libfop-java (1:2.8-2) ... Selecting previously unselected package libitext1-java. Preparing to unpack .../216-libitext1-java_1.4-7_all.deb ... Unpacking libitext1-java (1.4-7) ... Selecting previously unselected package libxbean-reflect-java. Preparing to unpack .../217-libxbean-reflect-java_4.5-8_all.deb ... Unpacking libxbean-reflect-java (4.5-8) ... Selecting previously unselected package libplexus-container-default-java. Preparing to unpack .../218-libplexus-container-default-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default-java (2.1.1-1) ... Selecting previously unselected package libdoxia-java. Preparing to unpack .../219-libdoxia-java_1.12.0-1_all.deb ... Unpacking libdoxia-java (1.12.0-1) ... Selecting previously unselected package libmaven-reporting-api-java. Preparing to unpack .../220-libmaven-reporting-api-java_3.1.1-1_all.deb ... Unpacking libmaven-reporting-api-java (3.1.1-1) ... Selecting previously unselected package libplexus-i18n-java. Preparing to unpack .../221-libplexus-i18n-java_1.0-beta-10-6_all.deb ... Unpacking libplexus-i18n-java (1.0-beta-10-6) ... Selecting previously unselected package velocity. Preparing to unpack .../222-velocity_1.7-6_all.deb ... Unpacking velocity (1.7-6) ... Selecting previously unselected package libplexus-velocity-java. Preparing to unpack .../223-libplexus-velocity-java_1.2-3.1_all.deb ... Unpacking libplexus-velocity-java (1.2-3.1) ... Selecting previously unselected package liboro-java. Preparing to unpack .../224-liboro-java_2.0.8a-14_all.deb ... Unpacking liboro-java (2.0.8a-14) ... Selecting previously unselected package libvelocity-tools-java. Preparing to unpack .../225-libvelocity-tools-java_2.0-8_all.deb ... Unpacking libvelocity-tools-java (2.0-8) ... Selecting previously unselected package libxml-commons-resolver1.1-java. Preparing to unpack .../226-libxml-commons-resolver1.1-java_1.2-11_all.deb ... Unpacking libxml-commons-resolver1.1-java (1.2-11) ... Selecting previously unselected package libxerces2-java. Preparing to unpack .../227-libxerces2-java_2.12.2-1_all.deb ... Unpacking libxerces2-java (2.12.2-1) ... Selecting previously unselected package libxalan2-java. Preparing to unpack .../228-libxalan2-java_2.7.2-4_all.deb ... Unpacking libxalan2-java (2.7.2-4) ... Selecting previously unselected package libdoxia-sitetools-java. Preparing to unpack .../229-libdoxia-sitetools-java_1.11.1-1_all.deb ... Unpacking libdoxia-sitetools-java (1.11.1-1) ... Selecting previously unselected package libel-api-java. Preparing to unpack .../230-libel-api-java_3.0.0-3_all.deb ... Unpacking libel-api-java (3.0.0-3) ... Selecting previously unselected package libjansi-java. Preparing to unpack .../231-libjansi-java_2.4.0-2_all.deb ... Unpacking libjansi-java (2.4.0-2) ... Selecting previously unselected package libjaxb-api-java. Preparing to unpack .../232-libjaxb-api-java_2.3.1-1_all.deb ... Unpacking libjaxb-api-java (2.3.1-1) ... Selecting previously unselected package libjsp-api-java. Preparing to unpack .../233-libjsp-api-java_2.3.4-3_all.deb ... Unpacking libjsp-api-java (2.3.4-3) ... Selecting previously unselected package libservlet-api-java. Preparing to unpack .../234-libservlet-api-java_4.0.1-2_all.deb ... Unpacking libservlet-api-java (4.0.1-2) ... Selecting previously unselected package libwebsocket-api-java. Preparing to unpack .../235-libwebsocket-api-java_1.1-2_all.deb ... Unpacking libwebsocket-api-java (1.1-2) ... Selecting previously unselected package libjetty9-java. Preparing to unpack .../236-libjetty9-java_9.4.50-4+deb12u2_all.deb ... Unpacking libjetty9-java (9.4.50-4+deb12u2) ... Selecting previously unselected package libjgraph-java. Preparing to unpack .../237-libjgraph-java_5.12.4.2+dfsg-7_all.deb ... Unpacking libjgraph-java (5.12.4.2+dfsg-7) ... Selecting previously unselected package libjgrapht0.8-java. Preparing to unpack .../238-libjgrapht0.8-java_0.8.3-6_all.deb ... Unpacking libjgrapht0.8-java (0.8.3-6) ... Selecting previously unselected package libjgrapht0.8-java-doc. Preparing to unpack .../239-libjgrapht0.8-java-doc_0.8.3-6_all.deb ... Unpacking libjgrapht0.8-java-doc (0.8.3-6) ... Selecting previously unselected package libjsoup-java. Preparing to unpack .../240-libjsoup-java_1.15.3-1_all.deb ... Unpacking libjsoup-java (1.15.3-1) ... Selecting previously unselected package libjtidy-java. Preparing to unpack .../241-libjtidy-java_7+svn20110807-5_all.deb ... Unpacking libjtidy-java (7+svn20110807-5) ... Selecting previously unselected package libmaven-common-artifact-filters-java. Preparing to unpack .../242-libmaven-common-artifact-filters-java_3.3.2-1_all.deb ... Unpacking libmaven-common-artifact-filters-java (3.3.2-1) ... Selecting previously unselected package libmaven-artifact-transfer-java. Preparing to unpack .../243-libmaven-artifact-transfer-java_0.13.1-2_all.deb ... Unpacking libmaven-artifact-transfer-java (0.13.1-2) ... Selecting previously unselected package libmaven-clean-plugin-java. Preparing to unpack .../244-libmaven-clean-plugin-java_3.2.0-2_all.deb ... Unpacking libmaven-clean-plugin-java (3.2.0-2) ... Selecting previously unselected package libmaven-shared-incremental-java. Preparing to unpack .../245-libmaven-shared-incremental-java_1.1-3_all.deb ... Unpacking libmaven-shared-incremental-java (1.1-3) ... Selecting previously unselected package libplexus-compiler-java. Preparing to unpack .../246-libplexus-compiler-java_2.12.1-1_all.deb ... Unpacking libplexus-compiler-java (2.12.1-1) ... Selecting previously unselected package libqdox2-java. Preparing to unpack .../247-libqdox2-java_2.0.3-1_all.deb ... Unpacking libqdox2-java (2.0.3-1) ... Selecting previously unselected package libplexus-languages-java. Preparing to unpack .../248-libplexus-languages-java_1.1.1-2_all.deb ... Unpacking libplexus-languages-java (1.1.1-2) ... Selecting previously unselected package libmaven-compiler-plugin-java. Preparing to unpack .../249-libmaven-compiler-plugin-java_3.10.1-2_all.deb ... Unpacking libmaven-compiler-plugin-java (3.10.1-2) ... Selecting previously unselected package libplexus-build-api-java. Preparing to unpack .../250-libplexus-build-api-java_0.0.7-4_all.deb ... Unpacking libplexus-build-api-java (0.0.7-4) ... Selecting previously unselected package libmaven-filtering-java. Preparing to unpack .../251-libmaven-filtering-java_3.3.0-1_all.deb ... Unpacking libmaven-filtering-java (3.3.0-1) ... Selecting previously unselected package libmaven-invoker-java. Preparing to unpack .../252-libmaven-invoker-java_3.2.0-1_all.deb ... Unpacking libmaven-invoker-java (3.2.0-1) ... Selecting previously unselected package libplexus-interactivity-api-java. Preparing to unpack .../253-libplexus-interactivity-api-java_1.1-2_all.deb ... Unpacking libplexus-interactivity-api-java (1.1-2) ... Selecting previously unselected package libmaven-javadoc-plugin-java. Preparing to unpack .../254-libmaven-javadoc-plugin-java_3.4.1-2_all.deb ... Unpacking libmaven-javadoc-plugin-java (3.4.1-2) ... Selecting previously unselected package libmaven-reporting-impl-java. Preparing to unpack .../255-libmaven-reporting-impl-java_3.2.0-2_all.deb ... Unpacking libmaven-reporting-impl-java (3.2.0-2) ... Selecting previously unselected package libplexus-container-default1.5-java. Preparing to unpack .../256-libplexus-container-default1.5-java_2.1.1-1_all.deb ... Unpacking libplexus-container-default1.5-java (2.1.1-1) ... Selecting previously unselected package libplexus-ant-factory-java. Preparing to unpack .../257-libplexus-ant-factory-java_1.0~alpha2.1-4_all.deb ... Unpacking libplexus-ant-factory-java (1.0~alpha2.1-4) ... Selecting previously unselected package libplexus-bsh-factory-java. Preparing to unpack .../258-libplexus-bsh-factory-java_1.0~alpha7-5_all.deb ... Unpacking libplexus-bsh-factory-java (1.0~alpha7-5) ... Selecting previously unselected package libmaven-plugin-tools-java. Preparing to unpack .../259-libmaven-plugin-tools-java_3.7.1-1_all.deb ... Unpacking libmaven-plugin-tools-java (3.7.1-1) ... Selecting previously unselected package libmaven-reporting-exec-java. Preparing to unpack .../260-libmaven-reporting-exec-java_1.6.0-1_all.deb ... Unpacking libmaven-reporting-exec-java (1.6.0-1) ... Selecting previously unselected package libmaven-resources-plugin-java. Preparing to unpack .../261-libmaven-resources-plugin-java_3.3.0-1_all.deb ... Unpacking libmaven-resources-plugin-java (3.3.0-1) ... Selecting previously unselected package libmaven-site-plugin-java. Preparing to unpack .../262-libmaven-site-plugin-java_3.12.1-2_all.deb ... Unpacking libmaven-site-plugin-java (3.12.1-2) ... Selecting previously unselected package libsurefire-java. Preparing to unpack .../263-libsurefire-java_2.22.3-2_all.deb ... Unpacking libsurefire-java (2.22.3-2) ... Selecting previously unselected package libwagon-file-java. Preparing to unpack .../264-libwagon-file-java_3.5.3-1_all.deb ... Unpacking libwagon-file-java (3.5.3-1) ... Selecting previously unselected package libwagon-http-shaded-java. Preparing to unpack .../265-libwagon-http-shaded-java_3.5.3-1_all.deb ... Unpacking libwagon-http-shaded-java (3.5.3-1) ... Selecting previously unselected package libxml2-utils. Preparing to unpack .../266-libxml2-utils_2.9.14+dfsg-1.3~deb12u1_i386.deb ... Unpacking libxml2-utils (2.9.14+dfsg-1.3~deb12u1) ... Selecting previously unselected package maven. Preparing to unpack .../267-maven_3.8.7-1_all.deb ... Unpacking maven (3.8.7-1) ... Selecting previously unselected package maven-repo-helper. Preparing to unpack .../268-maven-repo-helper_1.11_all.deb ... Unpacking maven-repo-helper (1.11) ... Selecting previously unselected package maven-debian-helper. Preparing to unpack .../269-maven-debian-helper_2.6.3_all.deb ... Unpacking maven-debian-helper (2.6.3) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up liblcms2-2:i386 (2.14-2) ... Setting up libpixman-1-0:i386 (0.42.2-1) ... Setting up libpciaccess0:i386 (0.17-2) ... Setting up libslf4j-java (1.7.32-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libplexus-utils2-java (3.4.2-1) ... Setting up libplexus-classworlds-java (2.7.0-1) ... Setting up libqdox-java (1.12.1-3) ... Setting up libopentest4j-reporting-java (0.1.0-M1-2) ... Setting up libicu72:i386 (72.1-3) ... Setting up libplexus-build-api-java (0.0.7-4) ... Setting up liblerc4:i386 (4.0.0+ds-2) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.74) ... Setting up libdatrie1:i386 (0.2.13-2+b1) ... Setting up libqdox2-java (2.0.3-1) ... Setting up libaopalliance-java (20070526-7) ... Setting up libcommons-cli-java (1.5.0-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.74.6-2) ... No schema files found: doing nothing. Setting up libglvnd0:i386 (1.6.0-1) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-1) ... Setting up libpicocli-java (4.6.2-2) ... Setting up libasm-java (9.4-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7.1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libel-api-java (3.0.0-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up file (1:5.44-3) ... Setting up libunivocity-parsers-java (2.9.1-1) ... Setting up libjbig0:i386 (2.1-6.1) ... Setting up liboro-java (2.0.8a-14) ... Setting up libsnappy1v5:i386 (1.1.9-3) ... Setting up libfontbox2-java (2.0.27-2) ... Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.2.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:i386 (4.8.12-3.1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libapiguardian-java (1.1.2-1) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libnspr4:i386 (2:4.35-1) ... Setting up libjgrapht0.8-java-doc (0.8.3-6) ... Setting up libjtidy-java (7+svn20110807-5) ... Setting up libjansi-java (2.4.0-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:i386 (0.8-10) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:i386 (1.14.10-1~deb12u1) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libxz-java (1.9-1) ... Setting up libitext1-java (1.4-7) ... Setting up libcommons-pool-java (1.6-4) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libpcsclite1:i386 (1.9.9-2) ... Setting up libsensors5:i386 (1:3.6.0-7.1) ... Setting up libjgraph-java (5.12.4.2+dfsg-7) ... Setting up libactivation-java (1.2.0-2) ... Setting up libhamcrest-java (2.2-1) ... Setting up libglapi-mesa:i386 (22.3.6-1+deb12u1) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.2.4-0.2+deb12u1) ... Setting up libgif7:i386 (5.2.1-2.5) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.46.0-5) ... Setting up libtiff6:i386 (4.5.0-6+deb12u1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libxml-commons-external-java (1.4.01-5) ... Setting up procps (2:4.0.2-3) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libasound2:i386 (1.2.8-1+b1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libopentest4j-java (1.2.0-4) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up sgml-base (1.31) ... Setting up libgtk2.0-common (2.24.33-2) ... Setting up libatk1.0-0:i386 (2.46.0-5) ... Setting up libwagon-http-shaded-java (3.5.3-1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libjaxp1.3-java (1.3.05-6) ... Setting up openssl (3.0.11-1~deb12u2) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libdrm-common (2.4.114-1) ... Setting up libcdi-api-java (1.2-3) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libsnappy-jni (1.1.8.3-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3~deb12u1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libdom4j-java (2.1.3-2) ... Setting up libjaxb-api-java (2.3.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libcommons-dbcp-java (1.4-8) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libjetty9-java (9.4.50-4+deb12u2) ... Setting up libxcb-xfixes0:i386 (1.15-1) ... Setting up java-wrappers (0.4) ... Setting up libplexus-languages-java (1.1.1-2) ... Setting up libjgrapht0.8-java (0.8.3-6) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libxcb-glx0:i386 (1.15-1) ... Setting up libmaven-parent-java (35-1) ... Setting up libedit2:i386 (3.1-20221030-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:i386 (0.8-10) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:i386 (2:3.87.1-1) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:i386 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-1) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up libxcb-sync1:i386 (1.15-1) ... Setting up libxalan2-java (2.7.2-4) ... Setting up shared-mime-info (2.2-1) ... Setting up libcommons-lang3-java (3.12.0-2) ... Setting up libxcb-dri2-0:i386 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:i386 (2.4.114-1+b1) ... Setting up dwz (0.15-1) ... Setting up libmaven-common-artifact-filters-java (3.3.2-1) ... Setting up groff-base (1.22.4-10) ... Setting up libxcb-randr0:i386 (1.15-1) ... Setting up libllvm15:i386 (1:15.0.6-4+b1) ... Setting up libcommons-beanutils-java (1.9.4-1) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:i386 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.10+dfsg-1+b1) ... Setting up libsnappy-java (1.1.8.3-1) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up ca-certificates-java (20230710~deb12u1) ... No JRE found. Skipping Java certificates setup. Setting up libcommons-configuration-java (1.10-6) ... Setting up libwagon-file-java (3.5.3-1) ... Setting up libxml2-utils (2.9.14+dfsg-1.3~deb12u1) ... Setting up libcommons-codec-java (1.15-1) ... Setting up libxcomposite1:i386 (1:0.4.5-1) ... Setting up libavahi-client3:i386 (0.8-10) ... Setting up libdrm-amdgpu1:i386 (2.4.114-1+b1) ... Setting up libxcb-dri3-0:i386 (1.15-1) ... Setting up gtk-update-icon-cache (3.24.38-2~deb12u1) ... Setting up libx11-xcb1:i386 (2:1.8.4-2+deb12u2) ... Setting up velocity (1.7-6) ... Setting up fontconfig (2.14.1-4) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:i386 (2.4.114-1+b1) ... Setting up libxdamage1:i386 (1:1.1.6-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up libcommons-compress-java (1.22-1) ... Setting up libcommons-io-java (2.11.0-2) ... Setting up libdrm-radeon1:i386 (2.4.114-1+b1) ... Setting up libcommons-digester-java (1.8.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:i386 (1.50.12+ds-1) ... Setting up libdrm-intel1:i386 (2.4.114-1+b1) ... Setting up libgl1-mesa-dri:i386 (22.3.6-1+deb12u1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libxmlgraphics-commons-java (2.8-2) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.16.0-7) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up libmaven-filtering-java (3.3.0-1) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (43-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:i386 (1:6.0.0-2) ... Setting up libxinerama1:i386 (2:1.1.4-3) ... Setting up libxrandr2:i386 (2:1.5.2-2+b1) ... Setting up libcups2:i386 (2.4.2-3+deb12u5) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libpangoft2-1.0-0:i386 (1.50.12+ds-1) ... Setting up libmaven-resources-plugin-java (3.3.0-1) ... Setting up libpangocairo-1.0-0:i386 (1.50.12+ds-1) ... Setting up libplexus-io-java (3.3.1-2) ... Setting up libglx-mesa0:i386 (22.3.6-1+deb12u1) ... Setting up libxi6:i386 (2:1.8-1+b1) ... Setting up libglx0:i386 (1.6.0-1) ... Setting up libcommons-validator-java (1:1.7-1) ... Setting up libxtst6:i386 (2:1.2.3-1.1) ... Setting up libbatik-java (1.16+dfsg-1+deb12u1) ... Setting up libxcursor1:i386 (1:1.2.1-1) ... Setting up libmaven-invoker-java (3.2.0-1) ... Setting up debhelper (13.11.4) ... Setting up libgl1:i386 (1.6.0-1) ... Setting up libmaven-clean-plugin-java (3.2.0-2) ... Setting up openjdk-17-jre-headless:i386 (17.0.9+9-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libplexus-archiver-java (4.6.1-1) ... Setting up libfop-java (1:2.8-2) ... Setting up libgtk2.0-0:i386 (2.24.33-2) ... Setting up libmaven-archiver-java (3.6.0-1) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libguava-java (31.1-1) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libplexus-i18n-java (1.0-beta-10-6) ... Setting up libplexus-container-default1.5-java (2.1.1-1) ... Setting up libplexus-interactivity-api-java (1.1-2) ... Setting up libplexus-velocity-java (1.2-3.1) ... Setting up libmaven3-core-java (3.8.7-1) ... Setting up libmaven-shared-incremental-java (1.1-3) ... Setting up libmaven-shared-io-java (3.0.0-4) ... Setting up libplexus-bsh-factory-java (1.0~alpha7-5) ... Setting up libplexus-compiler-java (2.12.1-1) ... Setting up libmaven-compiler-plugin-java (3.10.1-2) ... Setting up libmaven-artifact-transfer-java (0.13.1-2) ... Setting up libmaven-file-management-java (3.0.0-1) ... Setting up libmaven-jar-plugin-java (3.3.0-2) ... Setting up libcommons-text-java (1.10.0-1) ... Setting up libdoxia-core-java (1.12.0-1) ... Setting up libdoxia-java (1.12.0-1) ... Setting up libmaven-reporting-api-java (3.1.1-1) ... Setting up libmaven-reporting-exec-java (1.6.0-1) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Processing triggers for ca-certificates-java (20230710~deb12u1) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven-repo-helper (1.11) ... Setting up maven (3.8.7-1) ... update-alternatives: using /usr/share/maven/bin/mvn to provide /usr/bin/mvn (mvn) in auto mode Setting up openjdk-17-jdk-headless:i386 (17.0.9+9-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up ant (1.10.13-1) ... Setting up junit4 (4.13.2-3) ... Setting up default-jre-headless (2:1.17-74) ... Setting up openjdk-17-jre:i386 (17.0.9+9-1~deb12u1) ... Setting up default-jre (2:1.17-74) ... Setting up openjdk-17-jdk:i386 (17.0.9+9-1~deb12u1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up libplexus-ant-factory-java (1.0~alpha2.1-4) ... Setting up default-jdk-headless (2:1.17-74) ... Setting up junit5 (5.9.2-1) ... Setting up default-jdk (2:1.17-74) ... Processing triggers for sgml-base (1.31) ... Setting up libvelocity-tools-java (2.0-8) ... Setting up libdoxia-sitetools-java (1.11.1-1) ... Setting up libmaven-site-plugin-java (3.12.1-2) ... Setting up libmaven-javadoc-plugin-java (3.4.1-2) ... Setting up libmaven-reporting-impl-java (3.2.0-2) ... Setting up libmaven-plugin-tools-java (3.7.1-1) ... Setting up libsurefire-java (2.22.3-2) ... Setting up maven-debian-helper (2.6.3) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20230710~deb12u1) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biojava-live-1.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biojava-live_1.9.5+dfsg-3_source.changes dpkg-buildpackage: info: source package biojava-live dpkg-buildpackage: info: source version 1:1.9.5+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Bourg dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean bash -c "for dir in \$(find . -name target -type d); do if [ -f \$(echo \$dir | sed -e s/target\$/pom.xml/) ]; then rm -Rf \$dir; fi done" mh_unpatchpoms -plibbiojava1.9-java dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure mh_patchpoms -plibbiojava1.9-java --debian-build --keep-pom-version --maven-repo=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian/maven-repo dh_auto_build /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/biojava-live-1.9.5\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian/maven-repo --batch-mode package javadoc:jar javadoc:aggregate -DskipTests -Dnotimestamp=true -Dlocale=en_US OpenJDK Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] biojava-legacy [pom] [INFO] bytecode [jar] [INFO] core [jar] [INFO] alignment [jar] [INFO] biosql [jar] [INFO] blast [jar] [INFO] sequencing [jar] [INFO] gui [jar] [INFO] phylo [jar] [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] ---------------------< org.biojava:biojava-legacy >--------------------- [INFO] Building biojava-legacy 1.9.5 [1/9] [INFO] --------------------------------[ pom ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ biojava-legacy --- [INFO] Not executing Javadoc as the project is not a Java classpath-capable package [INFO] [INFO] ------------------------< org.biojava:bytecode >------------------------ [INFO] Building bytecode 1.9.5 [2/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ bytecode --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ bytecode --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 44 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ChildContext.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ChildContext.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ConstantPool.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ bytecode --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ bytecode --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ bytecode --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ bytecode --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/target/bytecode-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ bytecode --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ByteCode.java:1347: warning: @param argument "lockVar" is not a parameter name. [WARNING] * @param lockVar Label for the local variable to lock on [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/package.html:146: warning: invalid input: '<' [WARNING] This will need a constructor. Remember, constructors have the name >init<:, [WARNING] ^ [WARNING] 3 warnings [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/target/bytecode-1.9.5-javadoc.jar [INFO] [INFO] --------------------------< org.biojava:core >-------------------------- [INFO] Building core 1.9.5 [3/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ core --- [INFO] Copying 29 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ core --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1063 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/core/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblFileFormer.java: Some input files use or override a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblFileFormer.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/agave/AGAVEQueryRegionPropHandler.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/agave/AGAVEQueryRegionPropHandler.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/Feature.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/Feature.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ core --- [INFO] Copying 53 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ core --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 148 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/core/target/test-classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojava/bio/seq/io/SeqIOToolsTest.java: Some input files use or override a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojava/bio/seq/io/SeqIOToolsTest.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojavax/ontology/SimpleComparableTermTest.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojavax/ontology/SimpleComparableTermTest.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojava/bio/proteomics/aaindex/SimpleSymbolPropertyTableDBTest.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/test/java/org/biojava/bio/proteomics/aaindex/SimpleSymbolPropertyTableDBTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ core --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ core --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/core/target/core-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ core --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/proteomics/aaindex/AAindexStreamReader.java:55: warning: invalid input: '<' [WARNING] * for (int i = 1; i <= symbols.length(); i++) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/AbstractAlphabet.java:51: warning: invalid input: '<' [WARNING] * This provides the frame-work for maintaining the SymbolParser <-> name [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/AlphabetIndex.java:60: warning: invalid input: '&' [WARNING] * The previous & changed fields should be arrays of symbols in the order they [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bibliography/BibRefQuery.java:625: warning: invalid input: '&' [WARNING] * @param properties FIXME: docs & params out of sync [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:150: warning: invalid input: '&' [WARNING] * An extention of JComponent that contains the points & encapsulates the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:150: warning: invalid input: '&' [WARNING] * An extention of JComponent that contains the points & encapsulates the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:331: warning: invalid input: '&' [WARNING] * Hooks up the mouse listener & cursor. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:332: warning: invalid input: '&' [WARNING] * Chooses default colors & Shapes. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/DNATools.java:255: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/DNATools.java:284: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:486: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:503: warning: invalid input: '<' [WARNING] * @param sb a StringBuffer123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblLikeLocationParser.java:55: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblLikeLocationParser.java:55: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:47: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:53: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:53: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/FeatureFilter.java:1657: warning: invalid input: '<' [WARNING] * SimilarityPairFeature and its score is <= filter's minimum [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/FeatureFilter.java:1657: warning: invalid input: '<' [WARNING] * SimilarityPairFeature and its score is <= filter's minimum [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/FuzzyPointLocation.java:34: warning: invalid input: '<' [WARNING] * the '<123' or '>123' type, which represent an unbounded location, [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:486: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:503: warning: invalid input: '<' [WARNING] * @param sb a StringBuffer delete transitions allowed [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/blast2html/HTMLRenderer.java:116: warning: invalid input: '<' [WARNING] * formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/NucleotideTools.java:380: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/NucleotideTools.java:442: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/ontology/obo/OboFileParser.java:49: warning: invalid input: '&view' [WARNING] * http://geneontology.cvs.sourceforge.net/geneontology/go-dev/java/oboedit/sources/org/geneontology/oboedit/dataadapter/OBOParseEngine.java?revision=1.10&view=markup [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/process/OutputHandler.java:33: warning: invalid usage of tag {@linkplain java.lang.Process#getOutputStream()() [WARNING] * {@linkplain java.lang.Process#getOutputStream()() STDOUT} output and/or the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:486: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] 100 warnings [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/core/target/core-1.9.5-javadoc.jar [INFO] [INFO] -----------------------< org.biojava:alignment >------------------------ [INFO] Building alignment 1.9.5 [4/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ alignment --- [INFO] Copying 89 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ alignment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 14 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/SubstitutionMatrix.java: /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/SubstitutionMatrix.java uses or overrides a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/SubstitutionMatrix.java: Recompile with -Xlint:removal for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ alignment --- [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ alignment --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 5 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/target/test-classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/test/java/org/biojava/bio/alignment/FlexibleAlignmentTest.java: /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/test/java/org/biojava/bio/alignment/FlexibleAlignmentTest.java uses unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/test/java/org/biojava/bio/alignment/FlexibleAlignmentTest.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ alignment --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ alignment --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/target/alignment-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ alignment --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/AlignmentAlgorithm.java:39: warning: invalid input: '<' [WARNING] * @author Andreas Dräger [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/AlignmentPair.java:217: warning: @param argument "queryLength" is not a parameter name. [WARNING] * @param queryLength [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/EditableAlignment.java:35: warning: invalid input: '<' [WARNING] * shifted to the right with offset > 1 to the left with offset < [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/SubstitutionMatrix.java:65: warning: invalid input: '<' [WARNING] * @author Andreas Dräger [WARNING] ^ [WARNING] 5 warnings [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/target/alignment-1.9.5-javadoc.jar [INFO] [INFO] -------------------------< org.biojava:biosql >------------------------- [INFO] Building biosql 1.9.5 [5/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ biosql --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ biosql --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 35 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojava/bio/seq/db/biosql/BioSQLSequenceDB.java: Some input files use or override a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojava/bio/seq/db/biosql/BioSQLSequenceDB.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojavax/bio/db/biosql/BioSQLRichSequenceDB.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojavax/bio/db/biosql/BioSQLRichSequenceDB.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojavax/bio/db/biosql/BioSQLRichSequenceDB.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/java/org/biojavax/bio/db/biosql/BioSQLRichSequenceDB.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ biosql --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ biosql --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 2 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/target/test-classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/test/java/org/biojava/bio/seq/db/biosql/BioSQLSequenceDBTest.java: /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/test/java/org/biojava/bio/seq/db/biosql/BioSQLSequenceDBTest.java uses or overrides a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/test/java/org/biojava/bio/seq/db/biosql/BioSQLSequenceDBTest.java: Recompile with -Xlint:deprecation for details. [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ biosql --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ biosql --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/target/biosql-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ biosql --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] 1 warning [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/target/biosql-1.9.5-javadoc.jar [INFO] [INFO] -------------------------< org.biojava:blast >-------------------------- [INFO] Building blast 1.9.5 [6/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ blast --- [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ blast --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 56 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/sax/GenericSAXParserTest.java: /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/sax/GenericSAXParserTest.java uses or overrides a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/sax/GenericSAXParserTest.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/sax/HSPSummaryHelper.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/sax/HSPSummaryHelper.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ blast --- [INFO] Copying 22 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ blast --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 19 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ blast --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ blast --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/target/blast-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ blast --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/src/main/java/org/biojava/bio/program/BlastLikeToXMLConverter.java:61: warning: invalid input: '<' [WARNING] * * looks something like then, [WARNING] ^ [WARNING] 2 warnings [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/target/blast-1.9.5-javadoc.jar [INFO] [INFO] -----------------------< org.biojava:sequencing >----------------------- [INFO] Building sequencing 1.9.5 [7/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ sequencing --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ sequencing --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 33 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/AbstractChromatogram.java: Some input files use or override a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/AbstractChromatogram.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/graphic/ChromatogramGraphic.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/graphic/ChromatogramGraphic.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/AbstractChromatogram.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/AbstractChromatogram.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ sequencing --- [INFO] Copying 77 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ sequencing --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 15 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/target/test-classes [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ sequencing --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ sequencing --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/target/sequencing-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ sequencing --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/graphic/ChromatogramGraphic.java:1074: warning: invalid input: '&' [WARNING] * Default value: {@link BasicStroke} with width 1.0, default cap & join. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/ChromatogramTools.java:67: warning: invalid input: '<' [WARNING] * for (int i = m ; i < n ; i++) [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/program/scf/SCF.java:169: warning: invalid input: '&returned' [WARNING] * PROB_UNDERCALL are just reversed &returned. [WARNING] ^ [WARNING] 4 warnings [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/target/sequencing-1.9.5-javadoc.jar [INFO] [INFO] --------------------------< org.biojava:gui >--------------------------- [INFO] Building gui 1.9.5 [8/9] [INFO] --------------------------------[ jar ]--------------------------------- [WARNING] The POM for org.apache.maven.plugins:maven-install-plugin:jar:2.4 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-install-plugin:2.4: Plugin org.apache.maven.plugins:maven-install-plugin:2.4 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-install-plugin:jar:2.4 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-deploy-plugin:2.7: Plugin org.apache.maven.plugins:maven-deploy-plugin:2.7 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-deploy-plugin:jar:2.7 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-antrun-plugin:1.3: Plugin org.apache.maven.plugins:maven-antrun-plugin:1.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-antrun-plugin:jar:1.3 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5: Plugin org.apache.maven.plugins:maven-assembly-plugin:2.2-beta-5 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-assembly-plugin:jar:2.2-beta-5 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-dependency-plugin:2.8: Plugin org.apache.maven.plugins:maven-dependency-plugin:2.8 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-dependency-plugin:jar:2.8 has not been downloaded from it before. [WARNING] The POM for org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 is missing, no dependency information available [WARNING] Failed to retrieve plugin descriptor for org.apache.maven.plugins:maven-release-plugin:2.5.3: Plugin org.apache.maven.plugins:maven-release-plugin:2.5.3 or one of its dependencies could not be resolved: Cannot access central (https://repo.maven.apache.org/maven2) in offline mode and the artifact org.apache.maven.plugins:maven-release-plugin:jar:2.5.3 has not been downloaded from it before. [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ gui --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ gui --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 99 source files to /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/target/classes [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/TranslatedSequencePanel.java: Some input files use or override a deprecated API. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/TranslatedSequencePanel.java: Recompile with -Xlint:deprecation for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/LineInfo.java: Some input files use or override a deprecated API that is marked for removal. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/LineInfo.java: Recompile with -Xlint:removal for details. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/LineInfo.java: Some input files use unchecked or unsafe operations. [INFO] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/sequence/LineInfo.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ gui --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ gui --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ gui --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.3.0:jar (default-jar) @ gui --- [INFO] Building jar: /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/target/gui-1.9.5.jar [INFO] [INFO] --- maven-javadoc-plugin:3.4.1:jar (default-cli) @ gui --- [INFO] Adding the --ignore-source-errors option [INFO] No previous run data found, generating javadoc. [WARNING] Javadoc Warnings [WARNING] warning: The -footer option is no longer supported and will be ignored. [WARNING] It may be removed in a future release. [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/LogoPainter.java:30: warning: invalid input: '&' [WARNING] * calculations for sizes & information and the like. The LogoPainter renders [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/glyph/RectangleGlyph.java:32: warning: invalid input: '<' [WARNING] * @author then, [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/java/org/biojava/utils/bytecode/ByteCode.java:1347: warning: @param argument "lockVar" is not a parameter name. [WARNING] * @param lockVar Label for the local variable to lock on [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/graphic/ChromatogramGraphic.java:1074: warning: invalid input: '&' [WARNING] * Default value: {@link BasicStroke} with width 1.0, default cap & join. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/java/org/biojava/bio/chromatogram/ChromatogramTools.java:67: warning: invalid input: '<' [WARNING] * for (int i = m ; i < n ; i++) [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:150: warning: invalid input: '&' [WARNING] * An extention of JComponent that contains the points & encapsulates the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:150: warning: invalid input: '&' [WARNING] * An extention of JComponent that contains the points & encapsulates the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:331: warning: invalid input: '&' [WARNING] * Hooks up the mouse listener & cursor. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/stats/svm/tools/ClassifierExample.java:332: warning: invalid input: '&' [WARNING] * Chooses default colors & Shapes. [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/DNATools.java:255: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/DNATools.java:284: warning: invalid input: '&' [WARNING] * The index for a symbol is stable accross virtual machines & [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/src/main/java/org/biojava/bio/alignment/EditableAlignment.java:35: warning: invalid input: '<' [WARNING] * shifted to the right with offset > 1 to the left with offset < [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:486: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:503: warning: invalid input: '<' [WARNING] * @param sb a StringBuffer123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblLikeLocationParser.java:55: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblLikeLocationParser.java:55: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:47: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:53: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/EmblProcessor.java:53: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/FeatureFilter.java:1657: warning: invalid input: '<' [WARNING] * SimilarityPairFeature and its score is <= filter's minimum [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/FeatureFilter.java:1657: warning: invalid input: '<' [WARNING] * SimilarityPairFeature and its score is <= filter's minimum [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:86: warning: invalid input: '&' [WARNING] * be transient and lazily instantiated. Be sure to register & unregister the [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/FuzzyPointLocation.java:34: warning: invalid input: '<' [WARNING] * the '<123' or '>123' type, which represent an unbounded location, [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:486: warning: invalid input: '<' [WARNING] * <123 or >123 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:492: warning: invalid input: '<' [WARNING] * <123..567 or 123..>567 or <123..>567 [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/seq/io/AbstractGenEmblFileFormer.java:503: warning: invalid input: '<' [WARNING] * @param sb a StringBuffer delete transitions allowed [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/blast2html/HTMLRenderer.java:116: warning: invalid input: '<' [WARNING] * formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&cvsroot' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/program/formats/Format.java:68: warning: invalid input: '&content' [WARNING] * the odda formats specification.

[WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/bio/symbol/Location.java:146: warning: invalid input: '&' [WARNING] * a.contains(b) && b.contains(a). You should call LocationTools.areEqual [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/java/org/biojava/bio/gui/LogoPainter.java:30: warning: invalid input: '&' [WARNING] * calculations for sizes & information and the like. The LogoPainter renders [WARNING] ^ [WARNING] /build/reproducible-path/biojava-live-1.9.5+dfsg/core/src/main/java/org/biojava/utils/AbstractChangeable.java:76: warning: invalid input: '&' [WARNING] * if(someForwarder == null && ct.isMatching(SomeInterface.SomeChangeType)) { [WARNING] ^ [WARNING] 100 warnings [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.5: [INFO] [INFO] biojava-legacy ..................................... SUCCESS [ 22.003 s] [INFO] bytecode ........................................... SUCCESS [ 3.377 s] [INFO] core ............................................... SUCCESS [ 21.971 s] [INFO] alignment .......................................... SUCCESS [ 2.150 s] [INFO] biosql ............................................. SUCCESS [ 2.874 s] [INFO] blast .............................................. SUCCESS [ 2.493 s] [INFO] sequencing ......................................... SUCCESS [ 2.667 s] [INFO] gui ................................................ SUCCESS [ 4.143 s] [INFO] phylo .............................................. SUCCESS [ 2.300 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:04 min [INFO] Finished at: 2025-02-16T05:58:11Z [INFO] ------------------------------------------------------------------------  dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/biojava-live-1.9.5\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian/maven-repo --batch-mode test OpenJDK Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] biojava-legacy [pom] [INFO] bytecode [jar] [INFO] core [jar] [INFO] alignment [jar] [INFO] biosql [jar] [INFO] blast [jar] [INFO] sequencing [jar] [INFO] gui [jar] [INFO] phylo [jar] [INFO] [INFO] ---------------------< org.biojava:biojava-legacy >--------------------- [INFO] Building biojava-legacy 1.9.5 [1/9] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] ------------------------< org.biojava:bytecode >------------------------ [INFO] Building bytecode 1.9.5 [2/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ bytecode --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ bytecode --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ bytecode --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ bytecode --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ bytecode --- [INFO] No tests to run. [INFO] [INFO] --------------------------< org.biojava:core >-------------------------- [INFO] Building core 1.9.5 [3/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ core --- [INFO] Copying 29 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ core --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ core --- [INFO] Copying 53 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ core --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ core --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.ontology.OntologyTest [INFO] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 s - in org.biojava.ontology.OntologyTest [INFO] Running org.biojava.ontology.TripleImplTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.ontology.TripleImplTest [INFO] Running org.biojava.ontology.TermImplTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.ontology.TermImplTest [INFO] Running org.biojava.ontology.ParseOBOFileTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.113 s - in org.biojava.ontology.ParseOBOFileTest [INFO] Running org.biojava.bio.program.phred.PhredToolsTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.153 s - in org.biojava.bio.program.phred.PhredToolsTest [INFO] Running org.biojava.bio.program.indexdb.IndexToolsTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.099 s - in org.biojava.bio.program.indexdb.IndexToolsTest [INFO] Running org.biojava.bio.seq.MergeFeatureHolderTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.MergeFeatureHolderTest [INFO] Running org.biojava.bio.seq.FeatureHolderUtilsTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.seq.FeatureHolderUtilsTest [INFO] Running org.biojava.bio.seq.db.HashSequenceDBTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.db.HashSequenceDBTest [INFO] Running org.biojava.bio.seq.db.TestHashSequenceDB [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 s - in org.biojava.bio.seq.db.TestHashSequenceDB [INFO] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [INFO] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest [INFO] Running org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest [INFO] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.db.EmblCDROMIndexStoreTest [INFO] Running org.biojava.bio.seq.SeqSerializationTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.041 s - in org.biojava.bio.seq.SeqSerializationTest [INFO] Running org.biojava.bio.seq.DNAToolsTest [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.DNAToolsTest [INFO] Running org.biojava.bio.seq.FeatureFilterTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.FeatureFilterTest [INFO] Running org.biojava.bio.seq.io.SeqIOToolsTest idb length: 79 [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.445 s - in org.biojava.bio.seq.io.SeqIOToolsTest [INFO] Running org.biojava.bio.seq.io.SmartSequenceBuilderTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.507 s - in org.biojava.bio.seq.io.SmartSequenceBuilderTest [INFO] Running org.biojava.bio.seq.io.MSFAlignmentFormatTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.seq.io.MSFAlignmentFormatTest [INFO] Running org.biojava.bio.seq.io.SymbolListCharSequenceTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.io.SymbolListCharSequenceTest [INFO] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in org.biojava.bio.seq.io.filterxml.FilterXMLTest [INFO] Running org.biojava.bio.seq.io.LocationFormatterTest [INFO] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in org.biojava.bio.seq.io.LocationFormatterTest [INFO] Running org.biojava.bio.seq.SimpleAssemblyTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojava.bio.seq.SimpleAssemblyTest [INFO] Running org.biojava.bio.seq.CircularSequenceTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.seq.CircularSequenceTest [INFO] Running org.biojava.bio.seq.FilterUtilsTest [INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.seq.FilterUtilsTest [INFO] Running org.biojava.bio.seq.NewSimpleAssemblyTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.NewSimpleAssemblyTest [INFO] Running org.biojava.bio.seq.project.ProjectedFeatureHolderTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.seq.project.ProjectedFeatureHolderTest [INFO] Running org.biojava.bio.seq.RNAToolsTest [INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.RNAToolsTest [INFO] Running org.biojava.bio.seq.impl.GappedSequenceTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.impl.GappedSequenceTest [INFO] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 s - in org.biojava.bio.seq.impl.ViewSeqSerializationTest [INFO] Running org.biojava.bio.seq.impl.ViewSequenceTest template: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} orignal: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} copy: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} template: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} orignal: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} copy: class org.biojava.bio.seq.Feature$Template: location=[1,2] type=synth source=my head typeTerm=any sourceTerm=any annotation={geneID=braca1} [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.seq.impl.ViewSequenceTest [INFO] Running org.biojava.bio.seq.impl.SubSequenceTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.bio.seq.impl.SubSequenceTest [INFO] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest [INFO] Running org.biojava.bio.seq.ProteinToolsTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.seq.ProteinToolsTest [INFO] Running org.biojava.bio.seq.filter.FilterTransformerTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.seq.filter.FilterTransformerTest [INFO] Running org.biojava.bio.dp.EmissionStateEventTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.dp.EmissionStateEventTest [INFO] Running org.biojava.bio.dp.MarkovModelEventTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.dp.MarkovModelEventTest [INFO] Running org.biojava.bio.dp.DPSerializationTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 s - in org.biojava.bio.dp.DPSerializationTest [INFO] Running org.biojava.bio.AnnotationTypeTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.AnnotationTypeTest [INFO] Running org.biojava.bio.proteomics.aaindex.AAindexTest org.biojava.bio.symbol.IllegalSymbolException: Symbol adenine not found in alphabet PROTEIN at org.biojava.bio.symbol.AbstractAlphabet.validate(AbstractAlphabet.java:327) at org.biojava.bio.symbol.AlphabetManager$ImmutableWellKnownAlphabetWrapper.validate(AlphabetManager.java:1601) at org.biojava.bio.symbol.SimpleSymbolPropertyTable.getDoubleValue(SimpleSymbolPropertyTable.java:67) at org.biojava.bio.proteomics.aaindex.AAindexTest.testDoubleValue(AAindexTest.java:189) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at junit.framework.TestCase.runTest(TestCase.java:177) at junit.framework.TestCase.runBare(TestCase.java:142) at junit.framework.TestResult$1.protect(TestResult.java:122) at junit.framework.TestResult.runProtected(TestResult.java:142) at junit.framework.TestResult.run(TestResult.java:125) at junit.framework.TestCase.run(TestCase.java:130) at junit.framework.TestSuite.runTest(TestSuite.java:241) at junit.framework.TestSuite.run(TestSuite.java:236) at org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:90) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:365) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:273) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:238) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:159) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:384) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) [INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.proteomics.aaindex.AAindexTest [INFO] Running org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest java.lang.NullPointerException: name is null. at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:172) at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:126) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at junit.framework.TestCase.runTest(TestCase.java:177) at junit.framework.TestCase.runBare(TestCase.java:142) at junit.framework.TestResult$1.protect(TestResult.java:122) at junit.framework.TestResult.runProtected(TestResult.java:142) at junit.framework.TestResult.run(TestResult.java:125) at junit.framework.TestCase.run(TestCase.java:130) at junit.framework.TestSuite.runTest(TestSuite.java:241) at junit.framework.TestSuite.run(TestSuite.java:236) at org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:90) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:365) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:273) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:238) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:159) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:384) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) org.biojava.bio.seq.db.IllegalIDException: No table found with name test. at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.table(SimpleSymbolPropertyTableDB.java:175) at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testTable(SimpleSymbolPropertyTableDBTest.java:134) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at junit.framework.TestCase.runTest(TestCase.java:177) at junit.framework.TestCase.runBare(TestCase.java:142) at junit.framework.TestResult$1.protect(TestResult.java:122) at junit.framework.TestResult.runProtected(TestResult.java:142) at junit.framework.TestResult.run(TestResult.java:125) at junit.framework.TestCase.run(TestCase.java:130) at junit.framework.TestSuite.runTest(TestSuite.java:241) at junit.framework.TestSuite.run(TestSuite.java:236) at org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:90) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:365) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:273) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:238) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:159) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:384) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) java.lang.NullPointerException: table is null. at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDB.addTable(SimpleSymbolPropertyTableDB.java:145) at org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest.testAddTable(SimpleSymbolPropertyTableDBTest.java:113) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at junit.framework.TestCase.runTest(TestCase.java:177) at junit.framework.TestCase.runBare(TestCase.java:142) at junit.framework.TestResult$1.protect(TestResult.java:122) at junit.framework.TestResult.runProtected(TestResult.java:142) at junit.framework.TestResult.run(TestResult.java:125) at junit.framework.TestCase.run(TestCase.java:130) at junit.framework.TestSuite.runTest(TestSuite.java:241) at junit.framework.TestSuite.run(TestSuite.java:236) at org.junit.internal.runners.JUnit38ClassRunner.run(JUnit38ClassRunner.java:90) at org.apache.maven.surefire.junit4.JUnit4Provider.execute(JUnit4Provider.java:365) at org.apache.maven.surefire.junit4.JUnit4Provider.executeWithRerun(JUnit4Provider.java:273) at org.apache.maven.surefire.junit4.JUnit4Provider.executeTestSet(JUnit4Provider.java:238) at org.apache.maven.surefire.junit4.JUnit4Provider.invoke(JUnit4Provider.java:159) at org.apache.maven.surefire.booter.ForkedBooter.invokeProviderInSameClassLoader(ForkedBooter.java:384) at org.apache.maven.surefire.booter.ForkedBooter.runSuitesInProcess(ForkedBooter.java:345) at org.apache.maven.surefire.booter.ForkedBooter.execute(ForkedBooter.java:126) at org.apache.maven.surefire.booter.ForkedBooter.main(ForkedBooter.java:418) [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest [INFO] Running org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.048 s - in org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest [INFO] Running org.biojava.bio.proteomics.MassCalcTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.proteomics.MassCalcTest [INFO] Running org.biojava.bio.proteomics.IsoelectricPointCalcTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.proteomics.IsoelectricPointCalcTest [INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest [INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest [INFO] Running org.biojava.bio.search.SeqContentPatternTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.search.SeqContentPatternTest [INFO] Running org.biojava.bio.search.MaxMismatchPatternTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.search.MaxMismatchPatternTest [INFO] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest [INFO] Running org.biojava.bio.symbol.CrossProductTokenizationTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CrossProductTokenizationTest [INFO] Running org.biojava.bio.symbol.SimpleSymbolEventTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleSymbolEventTest [INFO] Running org.biojava.bio.symbol.SimpleSymbolListTest [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleSymbolListTest [INFO] Running org.biojava.bio.symbol.SymbolSerializationTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.symbol.SymbolSerializationTest [INFO] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.023 s - in org.biojava.bio.symbol.SimpleWobbleDistributionTest [INFO] Running org.biojava.bio.symbol.GappedSymbolListTest [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.GappedSymbolListTest [INFO] Running org.biojava.bio.symbol.SimpleBasisSymbolEventTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleBasisSymbolEventTest [INFO] Running org.biojava.bio.symbol.IndexedNoAmbPackTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.IndexedNoAmbPackTest [INFO] Running org.biojava.bio.symbol.AlphabetSerializationTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.bio.symbol.AlphabetSerializationTest [INFO] Running org.biojava.bio.symbol.IntegerAlphabetTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.symbol.IntegerAlphabetTest [INFO] Running org.biojava.bio.symbol.CodonPrefToolsTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CodonPrefToolsTest [INFO] Running org.biojava.bio.symbol.NameTokenizationTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.NameTokenizationTest [INFO] Running org.biojava.bio.symbol.RangeLocationTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.bio.symbol.RangeLocationTest [INFO] Running org.biojava.bio.symbol.CircularLocationTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.CircularLocationTest [INFO] Running org.biojava.bio.symbol.PointLocationTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.PointLocationTest [INFO] Running org.biojava.bio.symbol.AlphabetManagerTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.AlphabetManagerTest [INFO] Running org.biojava.bio.symbol.CompoundLocationTest [INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.biojava.bio.symbol.CompoundLocationTest [INFO] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest Adding symbol list taccaccagga$ Adding symbol list taccaccagga$ [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 s - in org.biojava.bio.symbol.UkkonenSuffixTreeTest [INFO] Running org.biojava.bio.symbol.MergeLocationTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.MergeLocationTest [INFO] Running org.biojava.bio.symbol.SimpleAtomicSymbolEventTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleAtomicSymbolEventTest [INFO] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.183 s - in org.biojava.bio.symbol.CrossProductAlphabetIndexTest [INFO] Running org.biojava.bio.symbol.LinearAlphabetIndexTest symbolForIndex getAlphabet indexForSymbol [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.LinearAlphabetIndexTest [INFO] Running org.biojava.bio.symbol.TranslationTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.TranslationTest [INFO] Running org.biojava.bio.symbol.MotifToolsTest [INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojava.bio.symbol.MotifToolsTest [INFO] Running org.biojava.bio.symbol.BetweenLocationTest [INFO] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.symbol.BetweenLocationTest [INFO] Running org.biojava.bio.symbol.DoubleAlphabetTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.DoubleAlphabetTest [INFO] Running org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest [INFO] Running org.biojava.bio.symbol.TestSoftMaskedAlphabet [INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in org.biojava.bio.symbol.TestSoftMaskedAlphabet [INFO] Running org.biojava.bio.symbol.SimpleCodonPrefTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.symbol.SimpleCodonPrefTest [INFO] Running org.biojava.bio.symbol.SymbolListTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.604 s - in org.biojava.bio.symbol.SymbolListTest [INFO] Running org.biojava.bio.dist.TranslatedDistributionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.dist.TranslatedDistributionTest [INFO] Running org.biojava.bio.dist.DistributionTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.dist.DistributionTest [INFO] Running org.biojava.bio.dist.DistributionToolsTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.dist.DistributionToolsTest [INFO] Running org.biojava.bio.dist.DistSerTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.bio.dist.DistSerTest [INFO] Running org.biojava.bio.MergeAnnotationTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.bio.MergeAnnotationTest [INFO] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.bio.molbio.RestrictionEnzymeManagerTest [INFO] Running org.biojava.bio.molbio.RestrictionEnzymeTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.bio.molbio.RestrictionEnzymeTest [INFO] Running org.biojava.directory.SystemRegistryTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in org.biojava.directory.SystemRegistryTest [INFO] Running org.biojava.directory.OBDARegistryParserTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.directory.OBDARegistryParserTest [INFO] Running org.biojava.directory.RegistryConfigurationTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.directory.RegistryConfigurationTest [INFO] Running org.biojava.naming.ObdaInitialContextFactoryTest Reached Attributes: No attributes Binding: urn -> org.biojava.naming.ObdaContext@120f675 Reached urn Attributes: No attributes Binding: open-bio.org -> org.biojava.naming.ObdaContext@1237460 Reached urn:open-bio.org Attributes: {description=description: This is the root namespace for all OBDA URNs. All OBDA URNs should be prefixed by urn:open-bio.org as described in the file naming/open-bio_urns.txt in the module obda-specs in the cvs repository located at pub.open-bio.org:/home/repository/obf-common. } Binding: type -> org.biojava.naming.ObdaContext@1fbc594 Reached urn:open-bio.org:type Attributes: {description=description: The namespace for URNs that identify data types. It is expected that the types that are given IDs will be very general in nature, such as Sequence and File Format. All types are of type urn:open-bio.org:type:type. Any URN in the type namespace that is not of this type is not conforming to the OBDA specification for this namespace. } Binding: type -> org.biojava.naming.ObdaContext@14d32bf Reached urn:open-bio.org:type:type Attributes: {description=description: The OBDA URN that identifies the concept of 'type'. In a given language, this may map to the types of data structures, or objects. Alternativel, it may map to a particular set of keys being present in a map, or a term in an ontology. This is not important. The important thing is that we have unique identifiers for common types that all projects use and interact with. } Binding: format -> org.biojava.naming.ObdaContext@14d8276 Reached urn:open-bio.org:type:format Attributes: {description=description: A file format. Many file formats are used in bioinformatics. Entities of this type identify a format. The format can be used to choose how to treat a file. The format is not expected to be resolvable to a formal deffinition of the file structure using OBDA-supplied functionality. Different applications may chose to process a stream with the same format URN in different ways. This type of URN is purely there to identify the format of the stream, not the manner in which it should be processed. } Binding: alphabet -> org.biojava.naming.ObdaContext@e26986 Reached urn:open-bio.org:type:alphabet Attributes: {description=description: A biological sequence alphabet. Biological sequences are often represented as strings of characters. However, in differnt circumstances, the same characters can represent different things. For example, in DNA, the 't' character represents tyrosine. In Protein, this same character represents tryptophan. Associating alphabets with these sequences disambiguates their interpretation. Alphabets do not define a mapping to or from strings, but should be used wherever the type of the content of a sequence needs to be stated. } Binding: format -> org.biojava.naming.ObdaContext@1f2d6eb Reached urn:open-bio.org:format Attributes: {description=description: A namespace for OBDA URNs that define formats. All URNs within this namespace must be of the type urn:open-bio.org:type:format. Any URN in this namespace that is not of that type is not a valid OBDA URN. } Binding: enzyme -> org.biojava.naming.ObdaContext@16cd1e0 Reached urn:open-bio.org:format:enzyme Attributes: {description=description: The Enzyme database entry format. The enzyme database can be downloaded from the ebi at: ftp://ftp.ebi.ac.uk/pub/databases/enzyme/ For an example of a file in this format, see: ftp://ftp.ebi.ac.uk/pub/databases/enzyme/enzyme.dat The format is described more fully in ftp://ftp.ebi.ac.uk/pub/databases/enzyme/enzyser.txt } Binding: genbank -> org.biojava.naming.ObdaContext@a9a009 Reached urn:open-bio.org:format:genbank Attributes: {description=description: The GENBANK file format associated with the GENBANK sequence database. } Binding: swissprot -> org.biojava.naming.ObdaContext@1785903 Reached urn:open-bio.org:format:swissprot Attributes: {description=description: The SWISSPROT file format as used in the SWISSPROT sequence database. } Binding: embl -> org.biojava.naming.ObdaContext@9349 Reached urn:open-bio.org:format:embl Attributes: {description=description: The EMBL file format associated with entries in the EMBL sequence database. } Binding: alphabet -> org.biojava.naming.ObdaContext@168a7f8 Reached urn:open-bio.org:alphabet Attributes: {description=description: A namespace within which to store alphabet identifiers. Alphabets should represent URNs that represent objects of the type identified by urn:open-bio.org:type:alphabet, and any useage outside of this is not supported. } Binding: rna -> org.biojava.naming.ObdaContext@faf1f4 Reached urn:open-bio.org:alphabet:rna Attributes: {description=description: The RNA alphabet. RNA is composed from four nucleotides. Read a biochemistry or genetics introductory textbook to find out more. Commonly, the nucleotides are reprsented by the four letters a, g, c and u. However, this is not a formal requirement for a resource to declare this alphabet as its type. } Binding: protein -> org.biojava.naming.ObdaContext@1811029 Reached urn:open-bio.org:alphabet:protein Attributes: {description=description: The protein alphabet. Proteins are composed from amino-acids. To find out more, read a biochemistry or genetics text book. It is common for protein sequences to be represented by characters, but this is not a formal requirement for a resource to publish an alphabet equal to this identifier. } Binding: dna -> org.biojava.naming.ObdaContext@12b584b Reached urn:open-bio.org:alphabet:dna Attributes: {description=description: The DNA alphabet. DNA is composed from four nucleotides. Read a biochemistry or genetics introductory textbook to find out more. Commonly, the nucleotides are reprsented by the four letters a, g, c and t. However, this is not a formal requirement for a resource to declare this alphabet as its type. } lookup: 'urn:open-bio.org:format:embl' for {urn=org.biojava.naming.ObdaContext@9aa7b2} My component is urn:open-bio.org:format:embl lookup: 'open-bio.org:format:embl' for {open-bio.org=org.biojava.naming.ObdaContext@99ca99} My component is open-bio.org:format:embl lookup: 'format:embl' for {type=org.biojava.naming.ObdaContext@1f0c343, format=org.biojava.naming.ObdaContext@1654f8, alphabet=org.biojava.naming.ObdaContext@bc55c4} My component is format:embl lookup: 'embl' for {enzyme=org.biojava.naming.ObdaContext@958f08, genbank=org.biojava.naming.ObdaContext@1c0b742, swissprot=org.biojava.naming.ObdaContext@1bb8c16, embl=org.biojava.naming.ObdaContext@1e1ecd0} My component is embl [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.021 s - in org.biojava.naming.ObdaInitialContextFactoryTest [INFO] Running org.biojava.naming.ObdaUriParserTest urn:obda.org:format:embl/ac :trail oneName lead: [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojava.naming.ObdaUriParserTest [INFO] Running org.biojava.utils.ListToolsTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.ListToolsTest [INFO] Running org.biojava.utils.regex.PatternCheckerTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.regex.PatternCheckerTest [INFO] Running org.biojava.utils.regex.RegexTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.regex.RegexTest [INFO] Running org.biojava.utils.lsid.LifeScienceIdentifierTest [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.lsid.LifeScienceIdentifierTest [INFO] Running org.biojava.utils.automata.NfaTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.automata.NfaTest [INFO] Running org.biojava.utils.SmallMapTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.SmallMapTest [INFO] Running org.biojava.utils.RepeatedCharSequenceTest JAM [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojava.utils.RepeatedCharSequenceTest [INFO] Running org.biojava.utils.process.ExternalProcessTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 s - in org.biojava.utils.process.ExternalProcessTest [INFO] Running org.biojava.utils.process.AllTests [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 s - in org.biojava.utils.process.AllTests [INFO] Running org.biojava.utils.walker.WalkerFactoryTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in org.biojava.utils.walker.WalkerFactoryTest [INFO] Running org.biojava.utils.walker.WalkerTest Increasing counter: Overlaps([20,50]) Increasing counter: Overlaps([20,50]) Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) Increasing counter: And(Overlaps([20,50]) , ByClass(org.biojava.bio.seq.StrandedFeature)) Increasing counter: Overlaps([20,50]) Increasing counter: ByClass(org.biojava.bio.seq.StrandedFeature) Increasing counter: ByClass(org.biojava.bio.seq.ComponentFeature) Increasing counter: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) Increasing counter: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) OverlapsLocation: Overlaps([20,50]) Feature: ByClass(org.biojava.bio.seq.StrandedFeature) OverlapsLocation: Overlaps([20,50]) Feature: ByClass(org.biojava.bio.seq.StrandedFeature) Feature: ByClass(org.biojava.bio.seq.ComponentFeature) Feature: Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature)) Feature: And(Overlaps([20,50]) , Or(ByClass(org.biojava.bio.seq.StrandedFeature) , ByClass(org.biojava.bio.seq.ComponentFeature))) [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.utils.walker.WalkerTest [INFO] Running org.biojavax.EmptyRichAnnotationTest testGetNoteSet testAddNote testAsMap testClear testKeys testGetNote testSetNoteSet testContains testSetProperty testRemoveNote testGetProperty testRemoveProperty testEquals testContainsProperty [INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.EmptyRichAnnotationTest [INFO] Running org.biojavax.ontology.SimpleComparableTripleTest testGetSubject testSetDescriptors testToString testGetSynonyms testRemoveDescriptor testCompareTo testAddSynonym testGetName testGetOntology testGetPredicate testGetAnnotation testGetDescription testGetDescriptors testHashCode testAddDescriptor testEquals testGetObject testRemoveSynonym [INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.ontology.SimpleComparableTripleTest [INFO] Running org.biojavax.ontology.SimpleComparableOntologyTest testSetTripleSet testCreateTriple testContainsTriple testGetTerms testCreateVariable testContainsTerm testGetTermSet testSetDescription testToString testGetOrCreateTerm testCompareTo testGetTriples testGetName testGetTerm testGetOrImportTerm testGetTripleSet testCreateTerm testGetDescription testSetTermSet testHashCode testDeleteTerm testEquals testGetOps testImportTerm [INFO] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.ontology.SimpleComparableOntologyTest [INFO] Running org.biojavax.ontology.SimpleComparableTermTest testSetDescription testGetRankedCrossRefs testToString testGetSynonyms testCompareTo testAddSynonym testGetName testGetOntology testSetRankedCrossRefs testGetIdentifier testGetAnnotation testRemoveRankedCrossRef testGetDescription testSetIdentifier testHashCode testEquals testAddRankedCrossRef testRemoveSynonym testSetObsolete testGetObsolete [INFO] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.ontology.SimpleComparableTermTest [INFO] Running org.biojavax.SimpleRankedDocRefTest testGetStart testSetLocation testToString testGetDocumentReference testCompareTo testGetRank testHashCode testEquals testGetEnd testSetRank [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojavax.SimpleRankedDocRefTest [INFO] Running org.biojavax.DummyCrossReferenceResolverTest testGetRemoteBioEntry testGetRemoteSymbolList [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.DummyCrossReferenceResolverTest [INFO] Running org.biojavax.SimpleRankedCrossRefTest testToString testGetCrossRef testCompareTo testGetRank testHashCode testEquals testSetRank [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleRankedCrossRefTest [INFO] Running org.biojavax.SimpleNamespaceTest testGetAuthority testSetDescription testToString testGetAcronym testCompareTo testGetName testSetAuthority testGetDescription testHashCode testSetAcronym testEquals testGetURI testSetURI [INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.SimpleNamespaceTest [INFO] Running org.biojavax.bio.taxa.SimpleNCBITaxonNameTest testGetNameClass testToString testCompareTo testSetNameClass testGetName testHashCode testEquals testSetName [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.taxa.SimpleNCBITaxonNameTest [INFO] Running org.biojavax.bio.seq.SimpleRichFeatureTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.seq.SimpleRichFeatureTest [INFO] Running org.biojavax.bio.seq.CompoundRichLocationTest testEquals [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.seq.CompoundRichLocationTest [INFO] Running org.biojavax.bio.seq.io.INSDseqFormatTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in org.biojavax.bio.seq.io.INSDseqFormatTest [INFO] Running org.biojavax.bio.seq.io.Bug2249_2248Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 s - in org.biojavax.bio.seq.io.Bug2249_2248Test [INFO] Running org.biojavax.bio.seq.io.GenbankFormatTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in org.biojavax.bio.seq.io.GenbankFormatTest [INFO] Running org.biojavax.bio.seq.io.Bug2250_2256Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.048 s - in org.biojavax.bio.seq.io.Bug2250_2256Test [INFO] Running org.biojavax.bio.seq.io.Bug2255Test [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojavax.bio.seq.io.Bug2255Test [INFO] Running org.biojavax.bio.seq.io.UniProtFormatTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojavax.bio.seq.io.UniProtFormatTest [INFO] Running org.biojavax.bio.seq.io.GenbankLocationParserTest Location 467: 467 Location 340..565: 340..565 Location <345..500: <345..500 Location <1..888: <1..888 Location (102.110): (102.110) Location (23.45)..600: (23.45)..600 Location (122.133)..(204.221): (122.133)..(204.221) Location 123^124: 123^124 Location 145^177: 145^177 Location join(12..78,134..202): join(12..78,134..202) Location complement(1..23): complement(1..23) Location complement(join(2691..4571,4918..5163): complement(join(2691..4571,4918..5163)) Location join(complement(4918..5163),complement(2691..4571)): complement(join(2691..4571,4918..5163)) Location complement(34..(122.126)): complement(34..(122.126)) Location complement((122.126)..34): complement((122.126)..34) Location J00194:100..202: J00194:100..202 Location (8298.8300)..10206: (8298.8300)..10206 Location join((8298.8300)..10206,1..855): join((8298.8300)..10206,1..855) [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.io.GenbankLocationParserTest [INFO] Running org.biojavax.bio.seq.io.EMBLFormatTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.bio.seq.io.EMBLFormatTest [INFO] Running org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest testEquals [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest [INFO] Running org.biojavax.bio.seq.SimpleRichLocationTest testEquals [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.SimpleRichLocationTest [INFO] Running org.biojavax.bio.seq.RichLocationToolsTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.bio.seq.RichLocationToolsTest [INFO] Running org.biojavax.bio.SimpleBioEntryTest testGetNamespace testGetNoteSet testGetRankedDocRefs testGetRelationships testGetTaxon testSetDescription testGetAccession testGetRankedCrossRefs testToString testCompareTo testGetName testRemoveComment testSetRankedCrossRefs testGetIdentifier testGetAnnotation testSetNoteSet testRemoveRankedCrossRef testRemoveRankedDocRef testRemoveRelationship testGetVersion testGetDescription testSetIdentifier testGetComments testHashCode testEquals testAddRankedCrossRef testAddRankedDocRef testAddRelationship testSetDivision testGetDivision testSetTaxon testAddComment [INFO] Tests run: 32, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in org.biojavax.bio.SimpleBioEntryTest [INFO] Running org.biojavax.SimpleDocRefAuthorTest testIsConsortium testToString testCompareTo testGetName testHashCode testEquals testGetExtendedName [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.SimpleDocRefAuthorTest [INFO] Running org.biojavax.SimpleNoteTest testGetValue testToString testCompareTo testGetRank testGetTerm testHashCode testEquals testSetRank testSetTerm testSetValue [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleNoteTest [INFO] Running org.biojavax.SimpleCrossRefTest testGetNoteSet testGetAccession testToString testCompareTo testGetAnnotation testSetNoteSet testGetVersion testHashCode testGetDbname testEquals [INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleCrossRefTest [INFO] Running org.biojavax.SimpleRichAnnotationTest testGetNoteSet testAddNote testAsMap testClear testKeys testToString testGetNote testSetNoteSet testContains testGetPropertys testSetProperty testRemoveNote testGetProperty testRemoveProperty testRemoveProperty2 testContainsProperty [INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleRichAnnotationTest [INFO] Running org.biojavax.SimpleDocRefTest testGetTitle testToString testGetLocation testSetCrossref testGetCrossref testCompareTo testGetAuthors testGetAuthorList testHashCode testSetRemark testEquals testGetCRC testGetRemark [INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.SimpleDocRefTest [INFO] Running org.biojavax.ga.util.GAToolsTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.ga.util.GAToolsTest [INFO] Running org.biojavax.ga.util.WeightedSetTest [INFO] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.ga.util.WeightedSetTest [INFO] Running org.biojavax.ga.impl.SimplePopulationTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.impl.SimplePopulationTest [INFO] Running org.biojavax.ga.impl.SimpleOrganismTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.impl.SimpleOrganismTest [INFO] Running org.biojavax.ga.functions.SimpleCrossOverFunctionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleCrossOverFunctionTest [INFO] Running org.biojavax.ga.functions.SimpleMutationFunctionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.SimpleMutationFunctionTest [INFO] Running org.biojavax.ga.functions.ProportionalSelectionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.ga.functions.ProportionalSelectionTest [INFO] Running org.biojavax.ga.functions.AbstractMutationFunctionTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.AbstractMutationFunctionTest [INFO] Running org.biojavax.ga.functions.AbstractCrossOverFunctionTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.ga.functions.AbstractCrossOverFunctionTest [INFO] Running org.biojavax.CrossReferenceResolutionExceptionTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.biojavax.CrossReferenceResolutionExceptionTest [INFO] Running org.biojavax.SimpleCommentTest testSetComment testToString testCompareTo testGetRank testHashCode testGetComment testEquals testSetRank [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.biojavax.SimpleCommentTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 890, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] -----------------------< org.biojava:alignment >------------------------ [INFO] Building alignment 1.9.5 [4/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ alignment --- [INFO] Copying 89 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ alignment --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ alignment --- [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ alignment --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ alignment --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.alignment.SubstitutionMatrixTest [INFO] Tests run: 96, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.325 s - in org.biojava.bio.alignment.SubstitutionMatrixTest [INFO] Running org.biojava.bio.alignment.FlexibleAlignmentTest [INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.alignment.FlexibleAlignmentTest [INFO] Running org.biojava.bio.alignment.AlignmentPairTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.alignment.AlignmentPairTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 102, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] -------------------------< org.biojava:biosql >------------------------- [INFO] Building biosql 1.9.5 [5/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ biosql --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ biosql --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ biosql --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ biosql --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ biosql --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest No hsqldb driver found. [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 s - in org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] -------------------------< org.biojava:blast >-------------------------- [INFO] Building blast 1.9.5 [6/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ blast --- [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ blast --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ blast --- [INFO] Copying 22 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ blast --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ blast --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.program.sax.blastxml.BlastXMLTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.239 s - in org.biojava.bio.program.sax.blastxml.BlastXMLTest [INFO] Running org.biojava.bio.program.sax.BlastTest [INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.107 s - in org.biojava.bio.program.sax.BlastTest [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.154 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.258 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.136 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.262 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 s - in org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.25 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.642 s - in org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.127 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.275 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.232 s - in org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.24 s - in org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 s - in org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test [INFO] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 s - in org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test [INFO] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test [INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.039 s - in org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test [INFO] [INFO] Results: [INFO] [INFO] Tests run: 118, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] -----------------------< org.biojava:sequencing >----------------------- [INFO] Building sequencing 1.9.5 [7/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ sequencing --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ sequencing --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ sequencing --- [INFO] Copying 77 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ sequencing --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ sequencing --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojava.bio.program.fastq.FastqTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in org.biojava.bio.program.fastq.FastqTest [INFO] Running org.biojava.bio.program.fastq.FastqBuilderTest [INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in org.biojava.bio.program.fastq.FastqBuilderTest [INFO] Running org.biojava.bio.program.fastq.SangerFastqWriterTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.028 s - in org.biojava.bio.program.fastq.SangerFastqWriterTest [INFO] Running org.biojava.bio.program.fastq.StreamingFastqParserTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.program.fastq.StreamingFastqParserTest [INFO] Running org.biojava.bio.program.fastq.IlluminaFastqWriterTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in org.biojava.bio.program.fastq.IlluminaFastqWriterTest [INFO] Running org.biojava.bio.program.fastq.FastqVariantTest [INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in org.biojava.bio.program.fastq.FastqVariantTest [INFO] Running org.biojava.bio.program.fastq.SangerFastqReaderTest [INFO] Tests run: 30, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 s - in org.biojava.bio.program.fastq.SangerFastqReaderTest [INFO] Running org.biojava.bio.program.fastq.SolexaFastqReaderTest [INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in org.biojava.bio.program.fastq.SolexaFastqReaderTest [INFO] Running org.biojava.bio.program.fastq.FastqToolsTest [INFO] Tests run: 38, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.178 s - in org.biojava.bio.program.fastq.FastqToolsTest [INFO] Running org.biojava.bio.program.fastq.IlluminaFastqReaderTest [INFO] Tests run: 25, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in org.biojava.bio.program.fastq.IlluminaFastqReaderTest [INFO] Running org.biojava.bio.program.fastq.ConvertTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in org.biojava.bio.program.fastq.ConvertTest [INFO] Running org.biojava.bio.program.fastq.SolexaFastqWriterTest [INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in org.biojava.bio.program.fastq.SolexaFastqWriterTest [INFO] Running org.biojava.bio.program.scf.SCFTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.041 s - in org.biojava.bio.program.scf.SCFTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 192, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] --------------------------< org.biojava:gui >--------------------------- [INFO] Building gui 1.9.5 [8/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ gui --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ gui --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ gui --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ gui --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ gui --- [INFO] No tests to run. [INFO] [INFO] -------------------------< org.biojava:phylo >-------------------------- [INFO] Building phylo 1.9.5 [9/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-resources-plugin:3.3.0:resources (default-resources) @ phylo --- [INFO] skip non existing resourceDirectory /build/reproducible-path/biojava-live-1.9.5+dfsg/phylo/src/main/resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:compile (default-compile) @ phylo --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.3.0:testResources (default-testResources) @ phylo --- [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:3.10.1:testCompile (default-testCompile) @ phylo --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:2.22.3:test (default-test) @ phylo --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.biojavax.bio.phylo.io.nexus.TreesBlockTest [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.102 s - in org.biojavax.bio.phylo.io.nexus.TreesBlockTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.5: [INFO] [INFO] biojava-legacy ..................................... SUCCESS [ 0.002 s] [INFO] bytecode ........................................... SUCCESS [ 0.385 s] [INFO] core ............................................... SUCCESS [ 10.252 s] [INFO] alignment .......................................... SUCCESS [ 10.070 s] [INFO] biosql ............................................. SUCCESS [ 10.062 s] [INFO] blast .............................................. SUCCESS [ 10.069 s] [INFO] sequencing ......................................... SUCCESS [ 10.069 s] [INFO] gui ................................................ SUCCESS [ 0.037 s] [INFO] phylo .............................................. SUCCESS [ 10.062 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 01:01 min [INFO] Finished at: 2025-02-16T05:59:13Z [INFO] ------------------------------------------------------------------------  create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/biojava-live-1.9.5\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian/maven-repo --batch-mode -Ddebian.dir=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian -Ddebian.package=libbiojava1.9-java -Dmaven.repo.local=/build/reproducible-path/biojava-live-1.9.5\+dfsg/debian/maven-repo -Dinstall.to.usj=true org.debian.maven:debian-maven-plugin:2.6:install OpenJDK Server VM warning: Options -Xverify:none and -noverify were deprecated in JDK 13 and will likely be removed in a future release. [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] biojava-legacy [pom] [INFO] bytecode [jar] [INFO] core [jar] [INFO] alignment [jar] [INFO] biosql [jar] [INFO] blast [jar] [INFO] sequencing [jar] [INFO] gui [jar] [INFO] phylo [jar] [INFO] [INFO] ---------------------< org.biojava:biojava-legacy >--------------------- [INFO] Building biojava-legacy 1.9.5 [1/9] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ biojava-legacy --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] --no-parent [INFO] [INFO] ------------------------< org.biojava:bytecode >------------------------ [INFO] Building bytecode 1.9.5 [2/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ bytecode --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/bytecode/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for bytecode into /usr/share/java [INFO] [INFO] --------------------------< org.biojava:core >-------------------------- [INFO] Building core 1.9.5 [3/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ core --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/core/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for core into /usr/share/java [INFO] [INFO] -----------------------< org.biojava:alignment >------------------------ [INFO] Building alignment 1.9.5 [4/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ alignment --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/alignment/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for alignment into /usr/share/java [INFO] [INFO] -------------------------< org.biojava:biosql >------------------------- [INFO] Building biosql 1.9.5 [5/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ biosql --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/biosql/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for biosql into /usr/share/java [INFO] [INFO] -------------------------< org.biojava:blast >-------------------------- [INFO] Building blast 1.9.5 [6/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ blast --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/blast/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for blast into /usr/share/java [INFO] [INFO] -----------------------< org.biojava:sequencing >----------------------- [INFO] Building sequencing 1.9.5 [7/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ sequencing --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/sequencing/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for sequencing into /usr/share/java [INFO] [INFO] --------------------------< org.biojava:gui >--------------------------- [INFO] Building gui 1.9.5 [8/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ gui --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/gui/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for gui into /usr/share/java [INFO] [INFO] -------------------------< org.biojava:phylo >-------------------------- [INFO] Building phylo 1.9.5 [9/9] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- debian-maven-plugin:2.6:install (default-cli) @ phylo --- [INFO] Cleaning pom file: /build/reproducible-path/biojava-live-1.9.5+dfsg/phylo/pom.xml.save with options: [INFO] --keep-pom-version --package=libbiojava1.9-java [INFO] --rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.rules [INFO] --ignore-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.ignoreRules [INFO] --published-rules=/build/reproducible-path/biojava-live-1.9.5+dfsg/debian/maven.publishedRules [INFO] Install jar for phylo into /usr/share/java [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for biojava-legacy 1.9.5: [INFO] [INFO] biojava-legacy ..................................... SUCCESS [ 0.258 s] [INFO] bytecode ........................................... SUCCESS [ 0.031 s] [INFO] core ............................................... SUCCESS [ 0.022 s] [INFO] alignment .......................................... SUCCESS [ 0.019 s] [INFO] biosql ............................................. SUCCESS [ 0.018 s] [INFO] blast .............................................. SUCCESS [ 0.018 s] [INFO] sequencing ......................................... SUCCESS [ 0.018 s] [INFO] gui ................................................ SUCCESS [ 0.019 s] [INFO] phylo .............................................. SUCCESS [ 0.026 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 0.557 s [INFO] Finished at: 2025-02-16T05:59:14Z [INFO] ------------------------------------------------------------------------  mh_resolve_dependencies --non-interactive --offline --build -plibbiojava1.9-java --javadoc --base-directory=/build/reproducible-path/biojava-live-1.9.5\+dfsg --non-explore Analysing pom.xml... Analysing alignment/pom.xml... Checking the parent dependency in the sub project alignment/pom.xml Analysing biosql/pom.xml... Checking the parent dependency in the sub project biosql/pom.xml Analysing blast/pom.xml... Checking the parent dependency in the sub project blast/pom.xml Analysing bytecode/pom.xml... Checking the parent dependency in the sub project bytecode/pom.xml Analysing core/pom.xml... Checking the parent dependency in the sub project core/pom.xml Analysing gui/pom.xml... Checking the parent dependency in the sub project gui/pom.xml Analysing phylo/pom.xml... Checking the parent dependency in the sub project phylo/pom.xml Analysing sequencing/pom.xml... Checking the parent dependency in the sub project sequencing/pom.xml Checking dependencies for documentation packages... > dpkg --search /usr/share/doc/libcommons-dbcp-java/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libcommons-dbcp-java/api/index.html > dpkg --search /usr/share/doc/libcommons-dbcp-java-doc/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libcommons-dbcp-java-doc/api/index.html > dpkg --search /usr/share/doc/libcommons-dbcp-java/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libcommons-dbcp-java/apidocs/index.html > dpkg --search /usr/share/doc/libcommons-dbcp-java-doc/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libcommons-dbcp-java-doc/apidocs/index.html > dpkg --search /usr/share/doc/libguava-java/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libguava-java/api/index.html > dpkg --search /usr/share/doc/libguava-java-doc/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libguava-java-doc/api/index.html > dpkg --search /usr/share/doc/libguava-java/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libguava-java/apidocs/index.html > dpkg --search /usr/share/doc/libguava-java-doc/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libguava-java-doc/apidocs/index.html > dpkg --search /usr/share/doc/libjgrapht0.8-java/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libjgrapht0.8-java/api/index.html > dpkg --search /usr/share/doc/libjgrapht0.8-java-doc/api/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libjgrapht0.8-java-doc/api/index.html > dpkg --search /usr/share/doc/libjgrapht0.8-java/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libjgrapht0.8-java/apidocs/index.html > dpkg --search /usr/share/doc/libjgrapht0.8-java-doc/apidocs/index.html dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/doc/libjgrapht0.8-java-doc/apidocs/index.html bash -c "rm -f target/apidocs/*.sh target/apidocs/options" mh_unpatchpoms -plibbiojava1.9-java dh_install debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/biojava-live-1.9.5+dfsg' dh_installdocs # Deleting calls to urchinTracker to enhance privacy. for F in $(find . -name "*.html"); do \ sed -i 's/^$//' $F; \ done make[1]: Leaving directory '/build/reproducible-path/biojava-live-1.9.5+dfsg' dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package libbiojava1.9-java: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: package libbiojava1.9-java: substitution variable ${maven:DocDepends} unused, but is defined dpkg-gencontrol: warning: package libbiojava-java-doc: substitution variable ${maven:CompileDepends} unused, but is defined dpkg-gencontrol: warning: package libbiojava-java-doc: substitution variable ${maven:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbiojava1.9-java' in '../libbiojava1.9-java_1.9.5+dfsg-3_all.deb'. dpkg-deb: building package 'libbiojava-java' in '../libbiojava-java_1.9.5+dfsg-3_all.deb'. dpkg-deb: building package 'libbiojava-java-doc' in '../libbiojava-java-doc_1.9.5+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary -O../biojava-live_1.9.5+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../biojava-live_1.9.5+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/118678 and its subdirectories I: Current time: Sat Feb 15 18:00:52 -12 2025 I: pbuilder-time-stamp: 1739685652 Sun Jan 14 23:37:56 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Sun Jan 14 23:37:56 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Sun Jan 14 23:45:46 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Sun Jan 14 23:45:47 UTC 2024 I: biojava-live_1.9.5+dfsg-3_i386.changes: Format: 1.8 Date: Fri, 12 May 2023 11:09:08 +0200 Source: biojava-live Binary: libbiojava-java libbiojava-java-doc libbiojava1.9-java Architecture: all Version: 1:1.9.5+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Emmanuel Bourg Description: libbiojava-java - Java API to biological data and applications (default version) libbiojava-java-doc - [Biology] Documentation for BioJava libbiojava1.9-java - Java API to biological data and applications (version 1.9) Changes: biojava-live (1:1.9.5+dfsg-3) unstable; urgency=medium . * Team upload. * Removed the dependency on libcommons-dbcp-java-doc Checksums-Sha1: 6bdc8847ac8c0ac3898f77416eb9a76e1f690617 13727 biojava-live_1.9.5+dfsg-3_i386.buildinfo 9a10cc07e0b56be0ac77c911ae4a35ad47bf7487 4132460 libbiojava-java-doc_1.9.5+dfsg-3_all.deb f08074689aad9da4220c854b889ddd8b06b7b119 5428 libbiojava-java_1.9.5+dfsg-3_all.deb 59a638d4c770dfd5dcd515d01e818fe40fa5e069 3154200 libbiojava1.9-java_1.9.5+dfsg-3_all.deb Checksums-Sha256: dbfca933a472e9c401a420a4c850adffd4a424f4a6a169664e1d1b6fbbb385a3 13727 biojava-live_1.9.5+dfsg-3_i386.buildinfo dbcb8eb60e5b4a28cf9d04b2dcc8ed1c54628f3060979e60597d878e83935562 4132460 libbiojava-java-doc_1.9.5+dfsg-3_all.deb 5398b390f7e023dfb22cd5876123dbcb1fb5e751cb5ac2496925cd8514f135b7 5428 libbiojava-java_1.9.5+dfsg-3_all.deb 896cef0b262b4ce86e228ff3f50ec8437a72c190e9041bc6d39ba8cd42e2a2c9 3154200 libbiojava1.9-java_1.9.5+dfsg-3_all.deb Files: fc5c4662562d1ad6e40e0f114adaff64 13727 java optional biojava-live_1.9.5+dfsg-3_i386.buildinfo 50ef7b2842cfce8aa869db0e79e4f124 4132460 doc optional libbiojava-java-doc_1.9.5+dfsg-3_all.deb 6ec0c1383500d11b6b00a5311b9fae01 5428 java optional libbiojava-java_1.9.5+dfsg-3_all.deb ae088cf95f45e829fc10791a8ee09699 3154200 java optional libbiojava1.9-java_1.9.5+dfsg-3_all.deb Sun Jan 14 23:45:48 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/biojava-live_1.9.5+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/biojava-live_1.9.5+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/biojava-live_1.9.5+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/b1/biojava-live_1.9.5+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.o0eJwLEG/b2/biojava-live_1.9.5+dfsg-3_i386.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 7.160s) 3.864s 8 calls diff 1.199s 6 calls xz 1.144s 11 calls js-beautify 0.936s 11 calls html2text 0.008s 2 calls cmp 0.008s 2 calls cmp (external) 0.001s 10 calls cmp (internal) ## compare_files (cumulative) (total time: 126.082s) 27.445s 1 call abc.DotChangesFile 27.416s 1 call abc.DebFile 27.370s 2 calls abc.XzFile 26.019s 1 call abc.DebDataTarFile 12.909s 1 call abc.JavaScriptFile 4.625s 1 call abc.HtmlFile 0.163s 1 call abc.TarFile 0.134s 1 call abc.Md5sumsFile ## container_extract (total time: 3.262s) 2.035s 9978 calls diffoscope.comparators.deb.DebTarContainer 1.199s 6 calls diffoscope.comparators.xz.XzContainer 0.020s 8 calls diffoscope.comparators.deb.DebContainer 0.008s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 2.142s) 2.142s 30 calls linediff ## has_same_content_as (total time: 0.010s) 0.005s 3 calls abc.DebFile 0.003s 1 call abc.DebDataTarFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.TarFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.HtmlFile 0.000s 1 call abc.JavaScriptFile ## main (total time: 30.044s) 30.038s 2 calls outputs 0.006s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 2.274s) 2.271s 1 call html 0.001s 1 call text 0.001s 1 call json ## recognizes (total time: 0.240s) 0.099s 572 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.074s 12 calls diffoscope.comparators.binary.FilesystemFile 0.053s 256 calls diffoscope.comparators.utils.archive.ArchiveMember 0.014s 162 calls diffoscope.comparators.debian.DebControlMember 0.000s 10 calls abc.DotChangesFile 0.000s 16 calls abc.Md5sumsFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.116s) 0.116s 15 calls specialize Sun Jan 14 23:46:18 UTC 2024 E: biojava-live failed to build reproducibly in bookworm on i386. Sun Jan 14 23:46:18 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/i386/biojava-live_1.9.5+dfsg-3.diffoscope.html Sun Jan 14 23:46:25 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jan 14 23:46:25 UTC 2024 I: Submitting 16K b1/biojava-live_1.9.5+dfsg-3_i386.buildinfo.asc Sun Jan 14 23:46:27 UTC 2024 I: Submitting 16K b2/biojava-live_1.9.5+dfsg-3_i386.buildinfo.asc Sun Jan 14 23:46:27 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 14 23:46:27 UTC 2024 I: Done submitting .buildinfo files. Sun Jan 14 23:46:27 UTC 2024 I: Removing signed biojava-live_1.9.5+dfsg-3_i386.buildinfo.asc files: removed './b1/biojava-live_1.9.5+dfsg-3_i386.buildinfo.asc' removed './b2/biojava-live_1.9.5+dfsg-3_i386.buildinfo.asc'