Fri Jun 9 23:47:52 UTC 2023 I: starting to build dazzdb/bookworm/i386 on jenkins on '2023-06-09 23:47' Fri Jun 9 23:47:52 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/390/console.log Fri Jun 9 23:47:52 UTC 2023 I: Downloading source for bookworm/dazzdb=1.0+git20221215.aad3a46-1 --2023-06-09 23:47:52-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dazzdb/dazzdb_1.0%2bgit20221215.aad3a46-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2121 (2.1K) [text/prs.lines.tag] Saving to: ‘dazzdb_1.0+git20221215.aad3a46-1.dsc’ 0K .. 100% 9.13M=0s 2023-06-09 23:47:52 (9.13 MB/s) - ‘dazzdb_1.0+git20221215.aad3a46-1.dsc’ saved [2121/2121] Fri Jun 9 23:47:52 UTC 2023 I: dazzdb_1.0+git20221215.aad3a46-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dazzdb Binary: dazzdb Architecture: any Version: 1.0+git20221215.aad3a46-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Pranav Ballaney Homepage: https://github.com/thegenemyers/DAZZ_DB Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/dazzdb Vcs-Git: https://salsa.debian.org/med-team/dazzdb.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: dazzdb deb science optional arch=any Checksums-Sha1: 5ead599c0a964fd9f28166acb9e1ef334729d3e2 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz f740d1273f027f20bbdab3260cfda3f517cf4dd2 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz Checksums-Sha256: a6efaeb2eb9b5059f046a00c5cbbd2c16311da3ed5d4d0b85145f13b8053458b 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz 75aee758d86394a4bba7c5103d03f250712234dcf04c2d23d67e6d1a909caf17 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz Files: 20da0b5d431c77234ecd679704b0a0c8 98548 dazzdb_1.0+git20221215.aad3a46.orig.tar.xz 5b8d9756090467001b65b6d5ab22e8a3 6688 dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPgzrQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFKyg/+OgwufXApn7jtYzSjuZPiFmW4Oph3Nwca GIKzDNKt9OXzhuhZ+mGCQG7lIzjh478t87jpkuzssDnZS3WkDsa9paXdN3ktmBGj SEzN0F059UYyVb/M5z7KciGa8mqcPV+0zzO/KQgnB8L7SkRmuODDQJmbYaGOoO4A 7cjHoLziUfSWdtGG3jpy386Av8HE1VtnoMS+SW3hFU3WQVgCWgXzTi9BQAcaed5U LBwYPSeJC1lTZZhsLp4rKceWVRHUvy5izL2Cajbxjn/mMvEymEHt+bsPJBjC3WUv Ui7tIw88l3ZJv4r0ZUOXio+vRR0MS+/og5tyMn2ol2/lIH4XDi2LYJSYkXf14YY8 t7U0lGOekbGEflMD9IQPakj+GLqI3mIl3WJjUfGuTmH1c5a10JHtFM9/adamz1Eo DK2mIR9614e3tXwXaHvegdZLOaHxln3VaR5L6ffxD6jQQxy9vaI3gnNQ4FRB7NFC yaRaorz7Eonj3YJDOrE6z5Efb14pA2XaBXTPjpdmiKhB3Dd2wXME28LEkgyL7p6W vBQP6Yi0oTc5lS9NJaWwg5VZ1UbbM/oFjNltp1rNP5LD76LMTMux5PcN5KUyuD38 kTMupJiQRAQMqUOKKwJeSweXWDwIlwg2MvIWQGakNLlWY1yThebotf1MNh0VzkFw qQsOSqogQxk= =wpKV -----END PGP SIGNATURE----- Fri Jun 9 23:47:52 UTC 2023 I: Checking whether the package is not for us Fri Jun 9 23:47:52 UTC 2023 I: Starting 1st build on remote node ionos16-i386.debian.net. Fri Jun 9 23:47:52 UTC 2023 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Fri Jun 9 23:48:23 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 11 18:10:53 -12 2024 I: pbuilder-time-stamp: 1720764653 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dazzdb_1.0+git20221215.aad3a46-1.dsc] I: copying [./dazzdb_1.0+git20221215.aad3a46.orig.tar.xz] I: copying [./dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 5 21:56:04 2023 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dazzdb_1.0+git20221215.aad3a46-1.dsc: no acceptable signature found dpkg-source: info: extracting dazzdb in dazzdb-1.0+git20221215.aad3a46 dpkg-source: info: unpacking dazzdb_1.0+git20221215.aad3a46.orig.tar.xz dpkg-source: info: unpacking dazzdb_1.0+git20221215.aad3a46-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying append-cflags.patch dpkg-source: info: applying compiler-flags.patch dpkg-source: info: applying destdir.patch dpkg-source: info: applying use-after-free.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/77041/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='2ce12271cd3e4d36b919526908fe7cf2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='77041' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/pbuilderrc_xvv6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/b1 --logfile b1/build.log dazzdb_1.0+git20221215.aad3a46-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-23-amd64 #1 SMP Debian 5.10.179-1 (2023-05-12) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/77041/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.9 MB of archives. After unpacking 74.0 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Fetched 19.9 MB in 0s (91.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19599 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/dazzdb-1.0+git20221215.aad3a46/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dazzdb_1.0+git20221215.aad3a46-1_source.changes dpkg-buildpackage: info: source package dazzdb dpkg-buildpackage: info: source version 1.0+git20221215.aad3a46-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' rm -f fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE rm -fr *.dSYM rm -f dazz.db.tar.gz make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DB.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DB cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DB2fasta cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DINTERACTIVE -Wl,-z,relro -Wl,-z,now quiva2DB.c DB.c DB.h QV.c QV.h -lm -lz -o quiva2DB cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2quiva.c DB.c DB.h QV.c QV.h -lm -lz -o DB2quiva cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBsplit.c DB.c DB.h QV.c QV.h -lm -lz -o DBsplit cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBdust.c DB.c DB.h QV.c QV.h -lm -lz -o DBdust cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now Catrack.c DB.c DB.h QV.c QV.h -lm -lz -o Catrack cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBshow.c DB.c DB.h QV.c QV.h -lm -lz -o DBshow cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBstats.c DB.c DB.h QV.c QV.h -lm -lz -o DBstats cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBrm.c DB.c DB.h QV.c QV.h -lm -lz -o DBrm cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -DMOVE -Wl,-z,relro -Wl,-z,now DBmv.c DB.c DB.h QV.c QV.h -lm -lz -o DBmv cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wl,-z,relro -Wl,-z,now -o DBcp DBmv.c DB.c DB.h QV.c QV.h -lm -lz cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now simulator.c DB.c DB.h QV.c QV.h -lm -lz -o simulator cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now fasta2DAM.c DB.c DB.h QV.c QV.h -lm -lz -o fasta2DAM cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DAM2fasta.c DB.c DB.h QV.c QV.h -lm -lz -o DAM2fasta cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now rangen.c -o rangen quiva2DB.c: In function 'main': quiva2DB.c:455:9: warning: pointer 'input' may be used after 'fclose' [-Wuse-after-free] 455 | if (fgetc(input) != EOF) | ^~~~~~~~~~~~ cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now arrow2DB.c DB.c QV.c DB.h QV.h -lm -lz -o arrow2DB quiva2DB.c:350:17: note: call to 'fclose' here 350 | fclose(input); | ^~~~~~~~~~~~~ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2arrow.c DB.c QV.c DB.h QV.h -lm -lz -o DB2arrow cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBwipe.c DB.c DB.h QV.c QV.h -lm -lz -o DBwipe cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DBtrim.c DB.c DB.h QV.c QV.h -lm -lz -o DBtrim cc -g -O2 -ffile-prefix-map=/build/dazzdb-1.0+git20221215.aad3a46=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now DB2ONE.c DB.c DB.h QV.c QV.h ONElib.c ONElib.h -lm -lz -o DB2ONE QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function 'Build_Table': QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function 'Huffman': QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:390:3: note: in expansion of macro 'assert' 390 | assert (fileType && strlen(fileType) > 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:391:3: note: in expansion of macro 'assert' 391 | assert (!subType || strlen(subType) > 0) ; | ^~~~~~ ONElib.c:393:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d ONElib.c:393:35: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 393 | sprintf (text, "P %ld %s\nS %ld %s\n", strlen(fileType),fileType, strlen(subType), subType) ; | ~~^ ~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d ONElib.c:395:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 395 | sprintf (text, "P %ld %s\n", strlen(fileType), fileType) ; | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d ONElib.c: In function 'oneReadLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:943:3: note: in expansion of macro 'assert' 943 | assert (!vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:944:3: note: in expansion of macro 'assert' 944 | assert (!vf->isFinal) ; | ^~~~~~ ONElib.c: In function 'oneFileOpenRead': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1156:3: note: in expansion of macro 'assert' 1156 | assert (fileType == NULL || strlen(fileType) > 0) ; | ^~~~~~ ONElib.c: In function 'addProvenance': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1758:3: note: in expansion of macro 'assert' 1758 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'oneAddProvenance': ONElib.c:1792:29: warning: implicit declaration of function 'vasprintf'; did you mean 'vsprintf'? [-Wimplicit-function-declaration] 1792 | va_start (args, format) ; vasprintf (&p.command, format, args) ; va_end (args) ; | ^~~~~~~~~ | vsprintf ONElib.c: In function 'addReference': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1809:3: note: in expansion of macro 'assert' 1809 | assert (!vf->isHeaderOut) ; | ^~~~~~ ONElib.c: In function 'writeHeader': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1883:3: note: in expansion of macro 'assert' 1883 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1884:3: note: in expansion of macro 'assert' 1884 | assert (vf->line == 0) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:1885:3: note: in expansion of macro 'assert' 1885 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c:1889:24: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1889 | fprintf (vf->f, "1 %lu %s %d %d", strlen(vf->fileType), vf->fileType, MAJOR, MINOR); | ~~^ ~~~~~~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long unsigned int | %u ONElib.c:1892:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1892 | { fprintf (vf->f, "\n2 %lu %s", strlen(vf->subType), vf->subType); | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long unsigned int | %u ONElib.c:1901:36: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1901 | { fprintf (vf->f, "\n! 4 %lu %s %lu %s %lu %s %lu %s", | ~~^ | | | long unsigned int | %u 1902 | strlen(p->program), p->program, strlen(p->version), p->version, | ~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} ONElib.c:1901:43: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1901 | { fprintf (vf->f, "\n! 4 %lu %s %lu %s %lu %s %lu %s", | ~~^ | | | long unsigned int | %u 1902 | strlen(p->program), p->program, strlen(p->version), p->version, | ~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} ONElib.c:1901:50: warning: format '%lu' expects argument of type 'long unsigned int', but argument 7 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1901 | { fprintf (vf->f, "\n! 4 %lu %s %lu %s %lu %s %lu %s", | ~~^ | | | long unsigned int | %u 1902 | strlen(p->program), p->program, strlen(p->version), p->version, 1903 | strlen(p->command), p->command, strlen(p->date), p->date); | ~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} ONElib.c:1901:57: warning: format '%lu' expects argument of type 'long unsigned int', but argument 9 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1901 | { fprintf (vf->f, "\n! 4 %lu %s %lu %s %lu %s %lu %s", | ~~^ | | | long unsigned int | %u 1902 | strlen(p->program), p->program, strlen(p->version), p->version, 1903 | strlen(p->command), p->command, strlen(p->date), p->date); | ~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} ONElib.c:1915:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1915 | { fprintf (vf->f, "\n< %lu %s %" PRId64 "", strlen(r->filename), r->filename, r->count); | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u ONElib.c:1922:34: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1922 | { fprintf (vf->f, "\n> %lu %s", strlen(r->filename), r->filename); | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | | size_t {aka unsigned int} | long unsigned int | %u ONElib.c: In function 'oneWriteLine': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2027:3: note: in expansion of macro 'assert' 2027 | assert (vf->isWrite) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2028:3: note: in expansion of macro 'assert' 2028 | assert (!vf->isFinal || !isalpha(t)) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2031:3: note: in expansion of macro 'assert' 2031 | assert (li) ; | ^~~~~~ ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2038:7: note: in expansion of macro 'assert' 2038 | { assert (listLen >= 0) ; | ^~~~~~ ONElib.c: In function 'oneFileClose': ONElib.c:35:19: warning: statement with no effect [-Wunused-value] 35 | #define assert(x) 0 | ^ ONElib.c:2486:3: note: in expansion of macro 'assert' 2486 | assert (vf->share >= 0) ; | ^~~~~~ ONElib.c: In function 'intGet': ONElib.c:3488:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3488 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3489:9: note: here 3489 | case 1: *pval = *(I64*)(u+1) & 0x0000000000ffff ; return 3 ; | ^~~~ ONElib.c:3500:17: warning: this statement may fall through [-Wimplicit-fallthrough=] 3500 | case 0: die ("int packing error") ; | ^~~~~~~~~~~~~~~~~~~~~~~~~ ONElib.c:3501:9: note: here 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~ ONElib.c:3486:7: warning: this statement may fall through [-Wimplicit-fallthrough=] 3486 | switch (u[0] & 0x07) | ^~~~~~ ONElib.c:3497:5: note: here 3497 | case 4: | ^~~~ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'ltfRead': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3501:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3501 | case 1: *pval = *(I64*)(u+1) | 0xffffffffffff0000 ; return 3 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3502:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3502 | case 2: *pval = *(I64*)(u+1) | 0xffffffffff000000 ; return 4 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3503:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3503 | case 3: *pval = *(I64*)(u+1) | 0xffffffff00000000 ; return 5 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3504:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3504 | case 4: *pval = *(I64*)(u+1) | 0xffffff0000000000 ; return 6 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3505:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3505 | case 5: *pval = *(I64*)(u+1) | 0xffff000000000000 ; return 7 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3506:25: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3506 | case 6: *pval = *(I64*)(u+1) | 0xff00000000000000 ; return 8 ; | ^~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ In function 'intGet', inlined from 'ltfRead' at ONElib.c:3546:7, inlined from 'readCompressedFields' at ONElib.c:894:15, inlined from 'oneReadLine' at ONElib.c:1037:2: ONElib.c:3507:23: warning: 'u' may be used uninitialized [-Wmaybe-uninitialized] 3507 | case 7: *pval = *(I64*)(u+1) ; return 9 ; | ~~~~~~^~~~~~~~~~~~~~ ONElib.c: In function 'oneReadLine': ONElib.c:3541:17: note: 'u' declared here 3541 | unsigned char u[16] ; | ^ make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_auto_install make -j16 install DESTDIR=/build/dazzdb-1.0\+git20221215.aad3a46/debian/dazzdb AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dazzdb-1.0+git20221215.aad3a46' install -d /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin install fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm DBmv DBcp simulator fasta2DAM DAM2fasta rangen arrow2DB DB2arrow DBwipe DBtrim DB2ONE /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin make[2]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' cd /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin && mv simulator dsimulator mkdir -p /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/share/man/man1 for command in /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/bin/*; \ do \ ln -s dazzdb.1 \ /build/dazzdb-1.0+git20221215.aad3a46/debian/dazzdb/usr/share/man/man1/$(basename $command).1; \ done make[1]: Leaving directory '/build/dazzdb-1.0+git20221215.aad3a46' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dazzdb' in '../dazzdb_1.0+git20221215.aad3a46-1_i386.deb'. dpkg-deb: building package 'dazzdb-dbgsym' in '../dazzdb-dbgsym_1.0+git20221215.aad3a46-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo dpkg-genchanges --build=binary -O../dazzdb_1.0+git20221215.aad3a46-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/77041 and its subdirectories I: Current time: Fri Jun 9 11:48:22 -12 2023 I: pbuilder-time-stamp: 1686354502 Fri Jun 9 23:48:23 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Fri Jun 9 23:48:23 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Fri Jun 9 23:49:50 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Fri Jun 9 23:49:50 UTC 2023 I: dazzdb_1.0+git20221215.aad3a46-1_i386.changes: Format: 1.8 Date: Mon, 06 Feb 2023 10:52:26 +0100 Source: dazzdb Binary: dazzdb dazzdb-dbgsym Architecture: i386 Version: 1.0+git20221215.aad3a46-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dazzdb - manage nucleotide sequencing read data Changes: dazzdb (1.0+git20221215.aad3a46-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: cd83c62d02b3ae0d79edc776981f6c2c8476aa36 1681388 dazzdb-dbgsym_1.0+git20221215.aad3a46-1_i386.deb 51a4bc8009d3149f0d1f0de24711f7d1699d2453 5226 dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo 55c471166c67ef69684075364f818bfa4de7fa58 217084 dazzdb_1.0+git20221215.aad3a46-1_i386.deb Checksums-Sha256: f73aa146cba2fddc4ba2f60a8b1800cc11d595a76285c942618cc9c38be2bc98 1681388 dazzdb-dbgsym_1.0+git20221215.aad3a46-1_i386.deb 2f9bc49673e1d372654f707868767a031a5843f7dda8432d7da45cf0c91a5422 5226 dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo ed63e626feb238b1a8a13977c84ebcc48b3053cd6c671b751dc9afae22c57d49 217084 dazzdb_1.0+git20221215.aad3a46-1_i386.deb Files: 11c05665f56a6274b56ec9c202176fcd 1681388 debug optional dazzdb-dbgsym_1.0+git20221215.aad3a46-1_i386.deb e985cb9c08b6747d834514405aa09f90 5226 science optional dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo 9968534cd8fc64caed524606591af27d 217084 science optional dazzdb_1.0+git20221215.aad3a46-1_i386.deb Fri Jun 9 23:49:51 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/dazzdb_1.0+git20221215.aad3a46-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/b1/dazzdb_1.0+git20221215.aad3a46-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.dTMqgxZY/b2/dazzdb_1.0+git20221215.aad3a46-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.350s) 0.350s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.037s) 0.037s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Jun 9 23:49:52 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 9 23:49:52 UTC 2023 I: dazzdb from bookworm built successfully and reproducibly on i386. Fri Jun 9 23:49:53 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jun 9 23:49:53 UTC 2023 I: Submitting 8.0K b1/dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo.asc Fri Jun 9 23:49:55 UTC 2023 I: Submitting 8.0K b2/dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo.asc Fri Jun 9 23:49:56 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 9 23:49:56 UTC 2023 I: Done submitting .buildinfo files. Fri Jun 9 23:49:56 UTC 2023 I: Removing signed dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo.asc files: removed './b1/dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo.asc' removed './b2/dazzdb_1.0+git20221215.aad3a46-1_i386.buildinfo.asc'