Thu May 4 15:11:31 UTC 2023 I: starting to build minc-tools/bookworm/i386 on jenkins on '2023-05-04 15:11' Thu May 4 15:11:31 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/2072/console.log Thu May 4 15:11:31 UTC 2023 I: Downloading source for bookworm/minc-tools=2.3.00+dfsg-10 --2023-05-04 15:11:31-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00%2bdfsg-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2204 (2.2K) [text/prs.lines.tag] Saving to: ‘minc-tools_2.3.00+dfsg-10.dsc’ 0K .. 100% 198M=0s 2023-05-04 15:11:31 (198 MB/s) - ‘minc-tools_2.3.00+dfsg-10.dsc’ saved [2204/2204] Thu May 4 15:11:31 UTC 2023 I: minc-tools_2.3.00+dfsg-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minc-tools Binary: minc-tools Architecture: any Version: 2.3.00+dfsg-10 Maintainer: Debian Med Packaging Team Uploaders: Steve M. Robbins , Andreas Tille Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/minc-tools Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper Package-List: minc-tools deb science optional arch=any Checksums-Sha1: d5f2d7d633410b1a1f1d4026adcd2c125a16847f 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 2ecd7e784a2e3d8226fc6722db012bb693fec1c0 14712 minc-tools_2.3.00+dfsg-10.debian.tar.xz Checksums-Sha256: 002b01c54b11305dc7350cc7e553debc4d07d4896b2eee850233d07ecc9989b9 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz 8b2e75ad5e086e7bd609e713660034f65f4d97832d10fb4fcd09b94ad54e0c6f 14712 minc-tools_2.3.00+dfsg-10.debian.tar.xz Files: 629912702e72bce17b78361027105e2b 2885395 minc-tools_2.3.00+dfsg.orig.tar.gz b69c965429af09a5a3da8cc2847f213a 14712 minc-tools_2.3.00+dfsg-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJDBAEBCAAtFiEEy89k8fa3rclNjyokyeVeL63I9LkFAmMqsh4PHHNtckBkZWJp YW4ub3JnAAoJEMnlXi+tyPS5T4QQAKL10RC2cnWPFrScdw05wT8DBX42T0UeIW6g zkfGU1pOw2M7D6z0uGOPNPPv/nMrpXqmslFT0VjevmUkQxKUon5s/4G31tjX0Y4j g6KnlRmffxwnSsazhIu1Qwt1ikluUFNMxYOhAnVrfJ8ywmb/y8ZynoCJLjyYxRma MUBgNjJpJQjD6FB8oWCT1dDc48JOPq3Tbyw5M6gcxL8Hf8ibtut6PxjvX5CTmnys sGyuO2Er0lTCFjJcGCLCiqmVlVejpk0LA5i36lA14J8K7bTSR9D24b+CPE69Fgir tzWQi/uJn6SU2QpB5wt0lIF+gk0jhOEqf5iPVUb1S9p1fMMvB24SVsA0KrXj8D2u DKmHwalhdB6/jN7hxUceTnSufDQDOBt3Lu7KlmZHO/GJf5LNTLa6QMq1GAbuakNj czRhKoERLMOq3I2aVdE3vFhs3IOGhkSvzJ0ow6cVClXEM0k4Q9BBSpu0Akp/Hiyh nMNU3Cuq9hRIIUy4Wl3NPd0QPT5lVv9v1E7/iFobTAtbaiCA2mz7TfiRswH9mTfM AzoteiZdLFzjisVaDmGpprYjpUEc5rxanHQmUwAMsgqsnSskuN7fctq3Bi9oxjSX XvHtSUUukvaptRymnx6zhb73JxBjsNfAttmhkMs21qY+nd74p8FxPlZob9zff0WV ntQ+ExLl =XbOx -----END PGP SIGNATURE----- Thu May 4 15:11:31 UTC 2023 I: Checking whether the package is not for us Thu May 4 15:11:31 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Thu May 4 15:11:31 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Thu May 4 15:17:03 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 4 03:11:34 -12 2023 I: pbuilder-time-stamp: 1683213094 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [minc-tools_2.3.00+dfsg-10.dsc] I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz] I: copying [./minc-tools_2.3.00+dfsg-10.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 20 18:41:34 2022 -12 gpgv: using RSA key CBCF64F1F6B7ADC94D8F2A24C9E55E2FADC8F4B9 gpgv: issuer "smr@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./minc-tools_2.3.00+dfsg-10.dsc: no acceptable signature found dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_mincedit-sensible-viewer.diff dpkg-source: info: applying build-with-libnifti dpkg-source: info: applying hdf5-1.10-support.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying fix_manpages.patch dpkg-source: info: applying fix-gcc10-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/458/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f1c0971117b044c08159e7c55d90c64d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='458' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/pbuilderrc_1eGb --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-10.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/458/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev, libnifti2-dev, libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on libminc-dev; however: Package libminc-dev is not installed. pbuilder-satisfydepends-dummy depends on libnifti2-dev; however: Package libnifti2-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} isa-support{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice6{a} libicu-dev{a} libicu72{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp25{a} libkpathsea6{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libminc-dev{a} libminc2-5.3.0{a} libnetcdf-dev{a} libnetcdf19{a} libnghttp2-14{a} libnifti2-2{a} libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libpsl5{a} libptexenc1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsm6{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53-5{a} libtexluajit2{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxml2-dev{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libznz-dev{a} libznz3{a} libzzip-0-13{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} sse2-support{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 370 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 flex i386 2.6.4-8.1 [430 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 isa-support i386 15 [9692 B] Get: 4 http://deb.debian.org/debian bookworm/main i386 sse2-support i386 15 [3320 B] Get: 5 http://deb.debian.org/debian bookworm/main i386 libproc2-0 i386 2:4.0.2-3 [63.7 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 procps i386 2:4.0.2-3 [706 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 bison i386 2:3.8.2+dfsg-1+b1 [1186 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libarchive13 i386 3.6.2-1 [385 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 libcurl4 i386 7.88.1-9 [420 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libjsoncpp25 i386 1.9.5-4 [86.2 kB] Get: 37 http://deb.debian.org/debian bookworm/main i386 librhash0 i386 1.4.3-3 [149 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 libuv1 i386 1.44.2-1 [147 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 cmake-data all 3.25.1-1 [2026 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 cmake i386 3.25.1-1 [9767 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 46 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 48 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 fontconfig-config i386 2.14.1-4 [315 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 fonts-lmodern all 2.005-1 [4540 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 hdf5-helpers i386 1.10.8+repack1-1 [27.9 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 icu-devtools i386 72.1-3 [214 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libaec0 i386 1.0.6-1+b1 [22.4 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libsz2 i386 1.0.6-1+b1 [7884 B] Get: 61 http://deb.debian.org/debian bookworm/main i386 libaec-dev i386 1.0.6-1+b1 [21.5 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libfontconfig1 i386 2.14.1-4 [398 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 libpixman-1-0 i386 0.42.2-1 [548 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libx11-data all 2:1.8.4-2 [292 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libx11-6 i386 2:1.8.4-2 [782 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libcairo2 i386 1.16.0-7 [627 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libcurl4-gnutls-dev i386 7.88.1-9 [527 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libhdf5-103-1 i386 1.10.8+repack1-1 [1175 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libhdf5-cpp-103-1 i386 1.10.8+repack1-1 [136 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libhdf5-fortran-102 i386 1.10.8+repack1-1 [101 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-100 i386 1.10.8+repack1-1 [79.3 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-fortran-100 i386 1.10.8+repack1-1 [46.2 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libhdf5-hl-cpp-100 i386 1.10.8+repack1-1 [26.0 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 zlib1g-dev i386 1:1.2.13.dfsg-1 [913 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo-dev i386 1:2.1.5-2 [304 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 libjpeg-dev i386 1:2.1.5-2 [71.8 kB] Get: 93 http://deb.debian.org/debian bookworm/main i386 libssl-dev i386 3.0.8-1 [2487 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 libhdf5-dev i386 1.10.8+repack1-1 [2754 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 libicu-dev i386 72.1-3 [10.6 MB] Get: 98 http://deb.debian.org/debian bookworm/main i386 libkpathsea6 i386 2022.20220321.62855-5 [155 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 libnetcdf19 i386 1:4.9.0-3+b1 [526 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 libminc2-5.3.0 i386 2.4.05-4 [269 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 libxml2-dev i386 2.9.14+dfsg-1.2 [845 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 libnetcdf-dev i386 1:4.9.0-3+b1 [113 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 libminc-dev i386 2.4.05-4 [74.2 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 libznz3 i386 3.0.1-9 [14.1 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 libnifti2-2 i386 3.0.1-9 [84.2 kB] Get: 106 http://deb.debian.org/debian bookworm/main i386 libnifticdf2 i386 3.0.1-9 [51.6 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 libnifticdf-dev i386 3.0.1-9 [63.2 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 libniftiio2 i386 3.0.1-9 [62.3 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 libniftiio-dev i386 3.0.1-9 [73.8 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 libznz-dev i386 3.0.1-9 [14.5 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 libnifti2-dev i386 3.0.1-9 [106 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 libpaper1 i386 1.1.29 [12.7 kB] Get: 113 http://deb.debian.org/debian bookworm/main i386 libpaper-utils i386 1.1.29 [8972 B] Get: 114 http://deb.debian.org/debian bookworm/main i386 libptexenc1 i386 2022.20220321.62855-5 [44.6 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 libsynctex2 i386 2022.20220321.62855-5 [62.2 kB] Get: 117 http://deb.debian.org/debian bookworm/main i386 libteckit0 i386 2.5.11+ds1-1+b1 [282 kB] Get: 118 http://deb.debian.org/debian bookworm/main i386 libtexlua53-5 i386 2022.20220321.62855-5 [126 kB] Get: 119 http://deb.debian.org/debian bookworm/main i386 libtexluajit2 i386 2022.20220321.62855-5 [262 kB] Get: 120 http://deb.debian.org/debian bookworm/main i386 libxt6 i386 1:1.2.1-1.1 [192 kB] Get: 121 http://deb.debian.org/debian bookworm/main i386 libxmu6 i386 2:1.1.3-3 [62.5 kB] Get: 122 http://deb.debian.org/debian bookworm/main i386 libxpm4 i386 1:3.5.12-1.1 [50.0 kB] Get: 123 http://deb.debian.org/debian bookworm/main i386 libxaw7 i386 2:1.0.14-1 [209 kB] Get: 124 http://deb.debian.org/debian bookworm/main i386 libxi6 i386 2:1.8-1+b1 [86.2 kB] Get: 125 http://deb.debian.org/debian bookworm/main i386 libzzip-0-13 i386 0.13.72+dfsg.1-1.1 [60.1 kB] Get: 126 http://deb.debian.org/debian bookworm/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 127 http://deb.debian.org/debian bookworm/main i386 tex-common all 6.18 [32.5 kB] Get: 128 http://deb.debian.org/debian bookworm/main i386 texlive-binaries i386 2022.20220321.62855-5 [10.6 MB] Get: 129 http://deb.debian.org/debian bookworm/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 130 http://deb.debian.org/debian bookworm/main i386 texlive-base all 2022.20230122-3 [21.9 MB] Get: 131 http://deb.debian.org/debian bookworm/main i386 texlive-latex-base all 2022.20230122-3 [1182 kB] Fetched 108 MB in 4s (24.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package m4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.1_i386.deb ... Unpacking flex (2.6.4-8.1) ... Selecting previously unselected package isa-support:i386. Preparing to unpack .../isa-support_15_i386.deb ... Unpacking isa-support:i386 (15) ... Setting up isa-support:i386 (15) ... Selecting previously unselected package sse2-support. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19804 files and directories currently installed.) Preparing to unpack .../000-sse2-support_15_i386.deb ... Unpacking sse2-support (15) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../001-libproc2-0_2%3a4.0.2-3_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.2-3_i386.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../005-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package bison. Preparing to unpack .../018-bison_2%3a3.8.2+dfsg-1+b1_i386.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../019-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../020-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../021-libarchive13_3.6.2-1_i386.deb ... Unpacking libarchive13:i386 (3.6.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../022-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../023-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../024-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../025-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../026-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../027-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../028-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../029-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../030-libcurl4_7.88.1-9_i386.deb ... Unpacking libcurl4:i386 (7.88.1-9) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../031-libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../032-libjsoncpp25_1.9.5-4_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../033-librhash0_1.4.3-3_i386.deb ... Unpacking librhash0:i386 (1.4.3-3) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../034-libuv1_1.44.2-1_i386.deb ... Unpacking libuv1:i386 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../035-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../036-cmake_3.25.1-1_i386.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../037-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../038-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../039-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../040-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../041-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../042-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../043-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../044-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../045-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package gettext. Preparing to unpack .../046-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../047-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../048-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../049-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../050-fonts-dejavu-core_2.37-6_all.deb ... Unpacking fonts-dejavu-core (2.37-6) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../051-fontconfig-config_2.14.1-4_i386.deb ... Unpacking fontconfig-config (2.14.1-4) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../052-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../053-hdf5-helpers_1.10.8+repack1-1_i386.deb ... Unpacking hdf5-helpers (1.10.8+repack1-1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../054-icu-devtools_72.1-3_i386.deb ... Unpacking icu-devtools (72.1-3) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../055-libaec0_1.0.6-1+b1_i386.deb ... Unpacking libaec0:i386 (1.0.6-1+b1) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../056-libsz2_1.0.6-1+b1_i386.deb ... Unpacking libsz2:i386 (1.0.6-1+b1) ... Selecting previously unselected package libaec-dev:i386. Preparing to unpack .../057-libaec-dev_1.0.6-1+b1_i386.deb ... Unpacking libaec-dev:i386 (1.0.6-1+b1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../058-libbsd0_0.11.7-2_i386.deb ... Unpacking libbsd0:i386 (0.11.7-2) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../059-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../060-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../061-libfontconfig1_2.14.1-4_i386.deb ... Unpacking libfontconfig1:i386 (2.14.1-4) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../062-libpixman-1-0_0.42.2-1_i386.deb ... Unpacking libpixman-1-0:i386 (0.42.2-1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../063-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../064-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../065-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../066-libx11-data_2%3a1.8.4-2_all.deb ... Unpacking libx11-data (2:1.8.4-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../067-libx11-6_2%3a1.8.4-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.4-2) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../068-libxcb-render0_1.15-1_i386.deb ... Unpacking libxcb-render0:i386 (1.15-1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../069-libxcb-shm0_1.15-1_i386.deb ... Unpacking libxcb-shm0:i386 (1.15-1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../070-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../071-libxrender1_1%3a0.9.10-1.1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../072-libcairo2_1.16.0-7_i386.deb ... Unpacking libcairo2:i386 (1.16.0-7) ... Selecting previously unselected package libcurl3-gnutls:i386. Preparing to unpack .../073-libcurl3-gnutls_7.88.1-9_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.88.1-9) ... Selecting previously unselected package libcurl4-gnutls-dev:i386. Preparing to unpack .../074-libcurl4-gnutls-dev_7.88.1-9_i386.deb ... Unpacking libcurl4-gnutls-dev:i386 (7.88.1-9) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../075-libgfortran5_12.2.0-14_i386.deb ... Unpacking libgfortran5:i386 (12.2.0-14) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../076-libglib2.0-0_2.74.6-2_i386.deb ... Unpacking libglib2.0-0:i386 (2.74.6-2) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../077-libgraphite2-3_1.3.14-1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../078-libharfbuzz0b_6.0.0+dfsg-3_i386.deb ... Unpacking libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Selecting previously unselected package libhdf5-103-1:i386. Preparing to unpack .../079-libhdf5-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-cpp-103-1:i386. Preparing to unpack .../080-libhdf5-cpp-103-1_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-fortran-102:i386. Preparing to unpack .../081-libhdf5-fortran-102_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-100:i386. Preparing to unpack .../082-libhdf5-hl-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-fortran-100:i386. Preparing to unpack .../083-libhdf5-hl-fortran-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package libhdf5-hl-cpp-100:i386. Preparing to unpack .../084-libhdf5-hl-cpp-100_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../085-zlib1g-dev_1%3a1.2.13.dfsg-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../086-libjpeg62-turbo_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg62-turbo-dev:i386. Preparing to unpack .../087-libjpeg62-turbo-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libjpeg-dev:i386. Preparing to unpack .../088-libjpeg-dev_1%3a2.1.5-2_i386.deb ... Unpacking libjpeg-dev:i386 (1:2.1.5-2) ... Selecting previously unselected package libssl-dev:i386. Preparing to unpack .../089-libssl-dev_3.0.8-1_i386.deb ... Unpacking libssl-dev:i386 (3.0.8-1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../090-libhdf5-dev_1.10.8+repack1-1_i386.deb ... Unpacking libhdf5-dev (1.10.8+repack1-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../091-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package libice6:i386. Preparing to unpack .../092-libice6_2%3a1.0.10-1_i386.deb ... Unpacking libice6:i386 (2:1.0.10-1) ... Selecting previously unselected package libicu-dev:i386. Preparing to unpack .../093-libicu-dev_72.1-3_i386.deb ... Unpacking libicu-dev:i386 (72.1-3) ... Selecting previously unselected package libkpathsea6:i386. Preparing to unpack .../094-libkpathsea6_2022.20220321.62855-5_i386.deb ... Unpacking libkpathsea6:i386 (2022.20220321.62855-5) ... Selecting previously unselected package libnetcdf19:i386. Preparing to unpack .../095-libnetcdf19_1%3a4.9.0-3+b1_i386.deb ... Unpacking libnetcdf19:i386 (1:4.9.0-3+b1) ... Selecting previously unselected package libminc2-5.3.0:i386. Preparing to unpack .../096-libminc2-5.3.0_2.4.05-4_i386.deb ... Unpacking libminc2-5.3.0:i386 (2.4.05-4) ... Selecting previously unselected package libxml2-dev:i386. Preparing to unpack .../097-libxml2-dev_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2-dev:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package libnetcdf-dev. Preparing to unpack .../098-libnetcdf-dev_1%3a4.9.0-3+b1_i386.deb ... Unpacking libnetcdf-dev (1:4.9.0-3+b1) ... Selecting previously unselected package libminc-dev:i386. Preparing to unpack .../099-libminc-dev_2.4.05-4_i386.deb ... Unpacking libminc-dev:i386 (2.4.05-4) ... Selecting previously unselected package libznz3:i386. Preparing to unpack .../100-libznz3_3.0.1-9_i386.deb ... Unpacking libznz3:i386 (3.0.1-9) ... Selecting previously unselected package libnifti2-2:i386. Preparing to unpack .../101-libnifti2-2_3.0.1-9_i386.deb ... Unpacking libnifti2-2:i386 (3.0.1-9) ... Selecting previously unselected package libnifticdf2:i386. Preparing to unpack .../102-libnifticdf2_3.0.1-9_i386.deb ... Unpacking libnifticdf2:i386 (3.0.1-9) ... Selecting previously unselected package libnifticdf-dev:i386. Preparing to unpack .../103-libnifticdf-dev_3.0.1-9_i386.deb ... Unpacking libnifticdf-dev:i386 (3.0.1-9) ... Selecting previously unselected package libniftiio2:i386. Preparing to unpack .../104-libniftiio2_3.0.1-9_i386.deb ... Unpacking libniftiio2:i386 (3.0.1-9) ... Selecting previously unselected package libniftiio-dev:i386. Preparing to unpack .../105-libniftiio-dev_3.0.1-9_i386.deb ... Unpacking libniftiio-dev:i386 (3.0.1-9) ... Selecting previously unselected package libznz-dev:i386. Preparing to unpack .../106-libznz-dev_3.0.1-9_i386.deb ... Unpacking libznz-dev:i386 (3.0.1-9) ... Selecting previously unselected package libnifti2-dev. Preparing to unpack .../107-libnifti2-dev_3.0.1-9_i386.deb ... Unpacking libnifti2-dev (3.0.1-9) ... Selecting previously unselected package libpaper1:i386. Preparing to unpack .../108-libpaper1_1.1.29_i386.deb ... Unpacking libpaper1:i386 (1.1.29) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../109-libpaper-utils_1.1.29_i386.deb ... Unpacking libpaper-utils (1.1.29) ... Selecting previously unselected package libptexenc1:i386. Preparing to unpack .../110-libptexenc1_2022.20220321.62855-5_i386.deb ... Unpacking libptexenc1:i386 (2022.20220321.62855-5) ... Selecting previously unselected package libsm6:i386. Preparing to unpack .../111-libsm6_2%3a1.2.3-1_i386.deb ... Unpacking libsm6:i386 (2:1.2.3-1) ... Selecting previously unselected package libsynctex2:i386. Preparing to unpack .../112-libsynctex2_2022.20220321.62855-5_i386.deb ... Unpacking libsynctex2:i386 (2022.20220321.62855-5) ... Selecting previously unselected package libteckit0:i386. Preparing to unpack .../113-libteckit0_2.5.11+ds1-1+b1_i386.deb ... Unpacking libteckit0:i386 (2.5.11+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:i386. Preparing to unpack .../114-libtexlua53-5_2022.20220321.62855-5_i386.deb ... Unpacking libtexlua53-5:i386 (2022.20220321.62855-5) ... Selecting previously unselected package libtexluajit2:i386. Preparing to unpack .../115-libtexluajit2_2022.20220321.62855-5_i386.deb ... Unpacking libtexluajit2:i386 (2022.20220321.62855-5) ... Selecting previously unselected package libxt6:i386. Preparing to unpack .../116-libxt6_1%3a1.2.1-1.1_i386.deb ... Unpacking libxt6:i386 (1:1.2.1-1.1) ... Selecting previously unselected package libxmu6:i386. Preparing to unpack .../117-libxmu6_2%3a1.1.3-3_i386.deb ... Unpacking libxmu6:i386 (2:1.1.3-3) ... Selecting previously unselected package libxpm4:i386. Preparing to unpack .../118-libxpm4_1%3a3.5.12-1.1_i386.deb ... Unpacking libxpm4:i386 (1:3.5.12-1.1) ... Selecting previously unselected package libxaw7:i386. Preparing to unpack .../119-libxaw7_2%3a1.0.14-1_i386.deb ... Unpacking libxaw7:i386 (2:1.0.14-1) ... Selecting previously unselected package libxi6:i386. Preparing to unpack .../120-libxi6_2%3a1.8-1+b1_i386.deb ... Unpacking libxi6:i386 (2:1.8-1+b1) ... Selecting previously unselected package libzzip-0-13:i386. Preparing to unpack .../121-libzzip-0-13_0.13.72+dfsg.1-1.1_i386.deb ... Unpacking libzzip-0-13:i386 (0.13.72+dfsg.1-1.1) ... Selecting previously unselected package t1utils. Preparing to unpack .../122-t1utils_1.41-4_i386.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package tex-common. Preparing to unpack .../123-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../124-texlive-binaries_2022.20220321.62855-5_i386.deb ... Unpacking texlive-binaries (2022.20220321.62855-5) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../125-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../126-texlive-base_2022.20230122-3_all.deb ... Unpacking texlive-base (2022.20230122-3) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../127-texlive-latex-base_2022.20230122-3_all.deb ... Unpacking texlive-latex-base (2022.20230122-3) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libgraphite2-3:i386 (1.3.14-1) ... Setting up libpixman-1-0:i386 (0.42.2-1) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up hdf5-helpers (1.10.8+repack1-1) ... Setting up libnifticdf2:i386 (3.0.1-9) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.74.6-2) ... No schema files found: doing nothing. Setting up libtexluajit2:i386 (2022.20220321.62855-5) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libzzip-0-13:i386 (0.13.72+dfsg.1-1.1) ... Setting up file (1:5.44-3) ... Setting up sse2-support (15) ... Setting up libaec0:i386 (1.0.6-1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up libuv1:i386 (1.44.2-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up libx11-data (2:1.8.4-2) ... Setting up libjpeg62-turbo-dev:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libteckit0:i386 (2.5.11+ds1-1+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:i386 (2022.20220321.62855-5) ... Setting up libproc2-0:i386 (2:4.0.2-3) ... Setting up libssl-dev:i386 (3.0.8-1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libjsoncpp25:i386 (1.9.5-4) ... Setting up icu-devtools (72.1-3) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libnifticdf-dev:i386 (3.0.1-9) ... Setting up libkpathsea6:i386 (2022.20220321.62855-5) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:i386 (1.4.3-3) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libznz3:i386 (3.0.1-9) ... Setting up procps (2:4.0.2-3) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libicu-dev:i386 (72.1-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsz2:i386 (1.0.6-1+b1) ... Setting up libsynctex2:i386 (2022.20220321.62855-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up flex (2.6.4-8.1) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:i386 (3.6.2-1) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libaec-dev:i386 (1.0.6-1+b1) ... Setting up libjpeg-dev:i386 (1:2.1.5-2) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libniftiio2:i386 (3.0.1-9) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxml2-dev:i386 (2.9.14+dfsg-1.2) ... Setting up libptexenc1:i386 (2022.20220321.62855-5) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up libznz-dev:i386 (3.0.1-9) ... Setting up libnifti2-2:i386 (3.0.1-9) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libcurl4:i386 (7.88.1-9) ... Setting up libx11-6:i386 (2:1.8.4-2) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up libfontconfig1:i386 (2.14.1-4) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libpaper1:i386 (1.1.29) ... Creating config file /etc/papersize with new version Setting up libxpm4:i386 (1:3.5.12-1.1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libniftiio-dev:i386 (3.0.1-9) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up libpaper-utils (1.1.29) ... Setting up libcurl4-gnutls-dev:i386 (7.88.1-9) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6:i386 (1:1.2.1-1.1) ... Setting up libhdf5-103-1:i386 (1.10.8+repack1-1) ... Setting up libhdf5-cpp-103-1:i386 (1.10.8+repack1-1) ... Setting up cmake (3.25.1-1) ... Setting up libnifti2-dev (3.0.1-9) ... Setting up libhdf5-hl-100:i386 (1.10.8+repack1-1) ... Setting up libxmu6:i386 (2:1.1.3-3) ... Setting up libxi6:i386 (2:1.8-1+b1) ... Setting up debhelper (13.11.4) ... Setting up libxaw7:i386 (2:1.0.14-1) ... Setting up libhdf5-hl-cpp-100:i386 (1.10.8+repack1-1) ... Setting up libhdf5-fortran-102:i386 (1.10.8+repack1-1) ... Setting up libnetcdf19:i386 (1:4.9.0-3+b1) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libhdf5-hl-fortran-100:i386 (1.10.8+repack1-1) ... Setting up texlive-base (2022.20230122-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2022.20230122-3) ... Setting up libminc2-5.3.0:i386 (2.4.05-4) ... Setting up libhdf5-dev (1.10.8+repack1-1) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.9.0-3+b1) ... Setting up libminc-dev:i386 (2.4.05-4) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-10_source.changes dpkg-buildpackage: info: source package minc-tools dpkg-buildpackage: info: source version 2.3.00+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steve M. Robbins dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' dh_auto_configure -- cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:20 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY): The OLD behavior for policy CMP0026 will be removed from a future version of CMake. The cmake-policies(7) manual explains that the OLD behaviors of all policies are deprecated and that a policy should be set to OLD only under specific short-term circumstances. Projects should be ported to the NEW behavior and not rely on setting a policy to OLD. -- Looking for mkstemp -- Looking for mkstemp - found -- Looking for tmpnam -- Looking for tmpnam - found -- Looking for tempnam -- Looking for tempnam - found -- Looking for strerror -- Looking for strerror - found -- Looking for popen -- Looking for popen - found -- Looking for fork -- Looking for fork - found -- Looking for vfork -- Looking for vfork - found -- Looking for fdopen -- Looking for fdopen - found -- Looking for strdup -- Looking for strdup - found -- Looking for getpwnam -- Looking for getpwnam - found -- Looking for select -- Looking for select - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for system -- Looking for system - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for include file sys/dir.h -- Looking for include file sys/dir.h - found -- Looking for include file sys/ndir.h -- Looking for include file sys/ndir.h - not found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file sys/wait.h -- Looking for include file sys/wait.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file vfork.h -- Looking for include file vfork.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Found BISON: /usr/bin/bison (found version "3.8.2") -- Found FLEX: /usr/bin/flex (found version "2.6.4") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincaverage.dir/build.make progs/CMakeFiles/mincaverage.dir/build [ 1%] [FLEX][lex] Building scanner with flex 2.6.4 make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color= [ 2%] [BISON][gram] Building parser with bison 3.8.2 [ 2%] [BISON][ncgentab] Building parser with bison 3.8.2 cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y [ 3%] [FLEX][ncgenyy] Building scanner with flex 2.6.4 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/build cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l [ 4%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o [ 5%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -MF CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o.d -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -MF CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o.d -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: warning: 1 shift/reduce conflict [-Wconflicts-sr] /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/depend [ 6%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccopy.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -MF CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o.d -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c [ 7%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/depend cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -MF CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o.d -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincdump.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccopy.dir/build.make progs/CMakeFiles/minccopy.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincdump.dir/build.make progs/CMakeFiles/mincdump.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 8%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -MF CMakeFiles/minccopy.dir/minccopy/minccopy.c.o.d -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c [ 8%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -MF CMakeFiles/mincdump.dir/mincdump/mincdump.c.o.d -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c [ 9%] Linking C executable invert_raw_image cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/invert_raw_image.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color= [ 10%] Linking C executable mincconvert cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 11%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color= cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/main.c.o -MF CMakeFiles/mincgen.dir/mincgen/main.c.o.d -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 12%] Linking C executable minccopy cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1 [ 13%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -MF CMakeFiles/minccalc.dir/minccalc/minccalc.c.o.d -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 14%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgentab.c.o -MF CMakeFiles/mincgen.dir/ncgentab.c.o.d -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgentab.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 14%] Built target invert_raw_image make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample1.dir/build.make progs/CMakeFiles/mincexample1.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 14%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -MF CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o.d -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 14%] Built target minccopy make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 14%] Built target mincconvert make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincexpand.dir/DependInfo.cmake --color= [ 15%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -MF CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o.d -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincexpand.dir/build.make progs/CMakeFiles/mincexpand.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 15%] Building C object progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -MF CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o.d -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c [ 15%] Linking C executable mincconcat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1 [ 16%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o -MF CMakeFiles/mincdump.dir/mincdump/vardata.c.o.d -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 16%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o -MF CMakeFiles/minccalc.dir/minccalc/eval.c.o.d -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c [ 17%] Linking C executable mincaverage cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 18%] Linking C executable mincexpand cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 19%] Linking C executable mincexample1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 19%] Built target mincconcat make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincextract.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincextract.dir/build.make progs/CMakeFiles/mincextract.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 20%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -MF CMakeFiles/mincextract.dir/mincextract/mincextract.c.o.d -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c [ 20%] Built target mincaverage make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 21%] Linking C executable mincexample2 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1 [ 22%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib -lminc2 -lm -lz -lm -ldl -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -MF CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o.d -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 22%] Built target mincexpand make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minclookup.dir/build.make progs/CMakeFiles/minclookup.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 22%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -MF CMakeFiles/minclookup.dir/minclookup/minclookup.c.o.d -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c [ 22%] Building C object progs/CMakeFiles/mincgen.dir/ncgenyy.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/ncgenyy.c.o -MF CMakeFiles/mincgen.dir/ncgenyy.c.o.d -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/ncgenyy.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 22%] Built target mincexample1 make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/DependInfo.cmake --color= [ 23%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -MF CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 24%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -MF CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o.d -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 24%] Built target mincexample2 make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color= [ 25%] Linking C executable mincextract cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1 make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmakevector.dir/build.make progs/CMakeFiles/mincmakevector.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 25%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -MF CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o.d -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c [ 26%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -MF CMakeFiles/mincdump.dir/mincdump/dumplib.c.o.d -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c [ 27%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o -MF CMakeFiles/minccalc.dir/minccalc/ident.c.o.d -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c [ 28%] Linking C executable minclookup cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1 [ 29%] Linking C executable mincmakescalar /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 30%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/node.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/node.c.o -MF CMakeFiles/minccalc.dir/minccalc/node.c.o.d -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c [ 31%] Linking C executable mincinfo cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 32%] Linking C executable mincdump cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1 [ 33%] Linking C executable mincmakevector cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -o mincmakevector -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 34%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/optim.c.o -MF CMakeFiles/minccalc.dir/minccalc/optim.c.o.d -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 34%] Built target mincextract make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 35%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o -MF CMakeFiles/minccalc.dir/minccalc/scalar.c.o.d -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 35%] Built target minclookup make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color= [ 36%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -MF CMakeFiles/mincmath.dir/mincmath/mincmath.c.o.d -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 37%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -MF CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o.d -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 37%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/sym.c.o -MF CMakeFiles/minccalc.dir/minccalc/sym.c.o.d -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c [ 37%] Built target mincmakescalar make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 38%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o -MF CMakeFiles/mincgen.dir/mincgen/escapes.c.o.d -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c [ 38%] Built target mincinfo make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color= make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 39%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -MF CMakeFiles/mincresample.dir/mincresample/mincresample.c.o.d -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincreshape.dir/build.make progs/CMakeFiles/mincreshape.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 39%] Built target mincmakevector make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/depend [ 40%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincstats.dir/DependInfo.cmake --color= [ 40%] Built target mincdump make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minctoraw.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincstats.dir/build.make progs/CMakeFiles/mincstats.dir/build [ 41%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o -MF CMakeFiles/mincgen.dir/mincgen/genlib.c.o.d -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minctoraw.dir/build.make progs/CMakeFiles/minctoraw.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 42%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -MF CMakeFiles/mincstats.dir/mincstats/mincstats.c.o.d -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c [ 43%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -MF CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o.d -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c [ 44%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o -MF CMakeFiles/minccalc.dir/minccalc/vector.c.o.d -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c [ 45%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/lex.c.o -MF CMakeFiles/minccalc.dir/lex.c.o.d -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/lex.c [ 45%] Linking C executable minc_modify_header cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minc_modify_header.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -o minc_modify_header -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 46%] Building C object progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -MF CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o.d -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c [ 47%] Linking C executable mincmath cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 47%] Linking C executable minctoraw cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1 /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop': /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~ /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647] 1454 | (void) sprintf(string, "%s%d", dimname, idim); | ^~~~~~ In file included from /usr/include/stdio.h:906, from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207: In function 'sprintf', inlined from 'create_output_file.constprop' at /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:20: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 47%] Built target minc_modify_header make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincwindow.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincwindow.dir/build.make progs/CMakeFiles/mincwindow.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 48%] Building C object progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -MF CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o.d -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 48%] Built target mincmath [ 49%] Linking C executable mincwindow cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1 [ 50%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o -MF CMakeFiles/mincgen.dir/mincgen/getfill.c.o.d -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 50%] Built target minctoraw make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 50%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c [ 50%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/init.c.o -MF CMakeFiles/mincgen.dir/mincgen/init.c.o.d -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c [ 51%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccalc.dir/gram.c.o -MF CMakeFiles/minccalc.dir/gram.c.o.d -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/gram.c [ 52%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincgen.dir/mincgen/load.c.o -MF CMakeFiles/mincgen.dir/mincgen/load.c.o.d -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 52%] Built target mincwindow make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color= [ 52%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -MF CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o.d -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/build [ 52%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c': /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:28: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=] 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~ In function 'cstring', inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:27: note: assuming directive output of 22 bytes 161 | (void) sprintf(cp,"%.16g",* (doublep + num)); | ^~~~~~~ In file included from /usr/include/stdio.h:906, from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11: In function 'sprintf', inlined from 'cstring' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:9, inlined from 'gen_c' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:361:20: /usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -MF CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o.d -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c [ 53%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -MF CMakeFiles/mincsample.dir/mincsample/mincsample.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c [ 54%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c [ 55%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -MF CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o.d -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c [ 56%] Linking C executable mincstats cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf [ 57%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -MF CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o.d -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c [ 58%] Linking C executable mincgen cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincgen.dir/mincgen/main.c.o CMakeFiles/mincgen.dir/ncgentab.c.o CMakeFiles/mincgen.dir/ncgenyy.c.o CMakeFiles/mincgen.dir/mincgen/escapes.c.o CMakeFiles/mincgen.dir/mincgen/genlib.c.o CMakeFiles/mincgen.dir/mincgen/getfill.c.o CMakeFiles/mincgen.dir/mincgen/init.c.o CMakeFiles/mincgen.dir/mincgen/load.c.o -o mincgen -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 58%] Linking C executable minccalc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1 [ 58%] Linking C executable mincsample cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 59%] Linking C executable mincreshape cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/rawtominc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 60%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -MF CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o.d -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c [ 60%] Built target mincstats make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 60%] Built target mincgen make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color= [ 61%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -MF CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o.d -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 62%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -MF CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o.d -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 62%] Built target mincsample make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake --color= [ 62%] Built target mincreshape make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfmconcat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 62%] Built target minccalc make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfmconcat.dir/build.make progs/CMakeFiles/xfmconcat.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 63%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o -MF CMakeFiles/transformtags.dir/xfm/transformtags.c.o.d -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 64%] Linking C executable voxeltoworld cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1 [ 65%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o [ 66%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -MF CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o.d -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -MF CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o.d -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 66%] Linking C executable worldtovoxel cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 67%] Linking C executable transformtags cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 68%] Linking C executable xfminvert [ 69%] Linking C executable xfmconcat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1 cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfminvert.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 69%] Built target voxeltoworld make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color= [ 70%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/build make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 70%] Built target worldtovoxel make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/depend [ 71%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -MF CMakeFiles/mincblob.dir/mincblob/mincblob.c.o.d -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/CMakeFiles/minccmp.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f progs/CMakeFiles/minccmp.dir/build.make progs/CMakeFiles/minccmp.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 72%] Building C object progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -MF CMakeFiles/minccmp.dir/minccmp/minccmp.c.o.d -o CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccmp/minccmp.c [ 73%] Linking C executable mincresample cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 74%] Linking C executable mincmorph cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmorph.dir/link.txt --verbose=1 [ 74%] Built target transformtags make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color= [ 74%] Built target xfminvert make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build [ 74%] Built target xfmconcat make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/build [ 74%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 75%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c [ 76%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 77%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -MF CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o.d -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c [ 77%] Built target mincresample make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 78%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -MF CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o.d -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c [ 78%] Built target mincmorph make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 79%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -MF CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o.d -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c [ 79%] Linking C executable rawtominc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1 [ 80%] Linking C executable minccmp cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -ldl -lnetcdf /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:736:31: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 736 | printf("# of voxels %ld\n", nii_ptr->nvox); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:743:23: warning: passing argument 3 of 'restructure_array' from incompatible pointer type [-Wincompatible-pointer-types] 743 | nii_lens, | ^~~~~~~~ | | | long unsigned int * In file included from /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c:8: /usr/include/restructure.h:13:37: note: expected 'const size_t *' {aka 'const unsigned int *'} but argument is of type 'long unsigned int *' 13 | const size_t *lengths_perm, | ~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 80%] Linking C executable mincblob cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main': /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 82%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c [ 82%] Built target rawtominc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 83%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c [ 83%] Built target mincblob make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/upet2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/upet2mnc.dir/build.make conversion/CMakeFiles/upet2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 83%] Built target minccmp [ 84%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -MF CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o.d -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c [ 85%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro 'VERSIONSTR' 419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL}, | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function 'upet_to_minc': /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR' 537 | argv_tmp[1] = VERSIONSTR; | ^~~~~~~~~~ [ 85%] Linking C executable mnc2nii cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio [ 86%] Linking C executable nii2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1 [ 87%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lniftiio -lm -lminc2 -lm -lz -ldl -lnetcdf -lniftiio [ 87%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -MF CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o.d -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c [ 87%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -MF CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o.d -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/element.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c [ 88%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c [ 88%] Built target nii2mnc make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/globals.c [ 89%] Built target mnc2nii [ 90%] Linking C executable minctoecat cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1 [ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/group.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lminc2 -lm -lz -lm -ldl -lnetcdf -lm -lminc2 -lm -lz -ldl -lnetcdf [ 92%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/message.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c [ 93%] Linking C executable ecattominc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 93%] Linking C executable upet2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf [ 93%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -MF CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o.d -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 93%] Built target minctoecat /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c: In function 'check_table_integrity': /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:72: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); | ~~^ ~~~~~~~~~~~~~~~~ | | | | | unsigned int | long unsigned int | %u /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c:179:76: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=] 179 | (void) fprintf(stderr, "Internal error: VR table size is wrong! %lu %lu %d\n", sizeof(VR_table), sizeof(VR_table[0]), ACR_VR_NUM_TYPES); | ~~^ ~~~~~~~~~~~~~~~~~~~ | | | | long unsigned int unsigned int | %u make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 93%] Built target ecattominc [ 93%] Built target upet2mnc [ 94%] Linking C static library libacr_nema.a cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1 /usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o /usr/bin/ranlib libacr_nema.a make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 94%] Built target acr_nema make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c [ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o [ 97%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o [ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c [ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c [100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/usr/lib/i386-linux-gnu/include -I/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -MD -MT conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -MF CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o.d -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__ | ^~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING' 179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL }, | ^~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_ima_file': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'use_the_files': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 980 | fscanf(fp, "%s", pipe_output_name); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables': /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1084 | fread(data, 1, length, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking C executable dcm2mnc cd /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1 /usr/bin/cc -g -O2 -ffile-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/i386-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -L/usr/lib/i386-linux-gnu/lib -Wl,-rpath,/usr/lib/i386-linux-gnu/lib: -lminc2 -lm -lz -lm -ldl -lnetcdf libacr_nema.a -lminc2 -lm -lz -lm -ldl -lnetcdf make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' [100%] Built target dcm2mnc make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j8 test ARGS\+=--verbose ARGS\+=-j8 make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j8 UpdateCTestConfiguration from :/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/DartConfiguration.tcl Test project /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: mincinfo-test 1: Test command: /build/minc-tools-2.3.00+dfsg/Testing/mincinfo-test.pl 1: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 1: Environment variables: 1: MINCINFO_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincinfo 1: Test timeout computed to be: 1500 test 2 Start 2: mincstats-test 2: Test command: /build/minc-tools-2.3.00+dfsg/Testing/mincstats-test.pl 2: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 2: Environment variables: 2: MINCSTATS_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincstats 2: Test timeout computed to be: 1500 test 3 Start 3: mincaverage-test 3: Test command: /build/minc-tools-2.3.00+dfsg/Testing/mincaverage-test.sh 3: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 3: Environment variables: 3: MINCAVERAGE_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincaverage 3: MINCSTATS_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincstats 3: Test timeout computed to be: 1500 test 4 Start 4: minccalc-test 4: Test command: /build/minc-tools-2.3.00+dfsg/Testing/minccalc-test.sh 4: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 4: Environment variables: 4: MINCCALC_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/minccalc 4: MINCSTATS_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincstats 4: Test timeout computed to be: 1500 test 5 Start 5: mincresample-test 5: Test command: /build/minc-tools-2.3.00+dfsg/Testing/mincresample-test.sh 5: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 5: Environment variables: 5: MINCRESAMPLE_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincresample 5: MINCSTATS_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincstats 5: Test timeout computed to be: 1500 test 6 Start 6: mincreshape-test 6: Test command: /build/minc-tools-2.3.00+dfsg/Testing/mincreshape-test.pl 6: Working Directory: /build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/Testing 6: Environment variables: 6: MINCRESHAPE_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincreshape 6: MINCSTATS_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincstats 6: MINCINFO_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincinfo 6: MINCEXTRACT_BIN=/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu/progs/mincextract 6: Test timeout computed to be: 1500 1: Case 1 - Test the essential command line options. 1: Case 2 - test operation with no command-line options. 2: Case 1 - Basic output. 2: Case 2 - Test the sum and sum2 options. 3: Processing:...Done 2: Case 3 - Test the mean option. 5: Transforming slices:.....Done 4: Case 1...OK 1: Case 3 - test the dimnames option. 2: Case 4 - Test the stddev and variance options. 1: Case 4 - test the varnames option. 2: Case 5 - Test the min and max options. 4: Case 2...OK 3: Normalizing:..Done 3: Processing:...Done 1: Case 5 - test the dimlength option. 2: Case 6 - Test the CoM option. 5: Transforming slices:.....Done 3: OK. 1/6 Test #3: mincaverage-test ................. Passed 0.33 sec 1: Case 6 - test the vartype option. 2: Case 7 - Test the median and entropy options. 4: Case 3...OK 5: OK. 2/6 Test #5: mincresample-test ................ Passed 0.34 sec 1: Case 7 - test the vardims option. 2: Case 8 - Test the histogram option. 2: Case 9 - Test the integer histogram option. 1: Case 8 - test the varatts option. 2: OK. 3/6 Test #2: mincstats-test ................... Passed 0.54 sec 4: Case 4...OK 1: Case 9 - test the varatts option. 1: Case 10 - test the atttype option. 1: Case 11 - test the attvalue option. 4: Case 5...OK...OK 1: Case 12 - test the minc_version option. 1: Case 13 - test the error_string option. 1: OK. 4/6 Test #1: mincinfo-test .................... Passed 0.86 sec 4: Case 6...OK...OK...OK 4: Case 7...OK 6: OK. 5/6 Test #6: mincreshape-test ................. Passed 0.98 sec 4: Case 8...OK 4: Case 9...OK 4: No errors detected. 6/6 Test #4: minccalc-test .................... Passed 1.22 sec 100% tests passed, 0 tests failed out of 6 Total Test time (real) = 1.28 sec make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/minc-tools/ cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdiff -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincedit -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincheader -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincview -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minchistory -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincpik -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/voxeltoworld.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincaverage.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincblob.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccalc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccmp.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccopy.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdiff.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdump.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc -- Set runtime path of "/build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc" to "" -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1 -- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1 make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg' cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share dh_link /usr/share/man/man1/voxeltoworld.1 \ /usr/share/man/man1/worldtovoxel.1 for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-10_i386.deb'. dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../minc-tools_2.3.00+dfsg-10_i386.buildinfo dpkg-genchanges --build=binary -O../minc-tools_2.3.00+dfsg-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/458 and its subdirectories I: Current time: Thu May 4 03:17:02 -12 2023 I: pbuilder-time-stamp: 1683213422 Thu May 4 15:17:03 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Thu May 4 15:17:03 UTC 2023 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Thu May 4 15:18:21 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. Thu May 4 15:18:21 UTC 2023 I: minc-tools_2.3.00+dfsg-10_i386.changes: Format: 1.8 Date: Wed, 21 Sep 2022 01:07:47 -0500 Source: minc-tools Binary: minc-tools minc-tools-dbgsym Architecture: i386 Version: 2.3.00+dfsg-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steve M. Robbins Description: minc-tools - MNI medical image format tools Changes: minc-tools (2.3.00+dfsg-10) unstable; urgency=medium . [ Steve Robbins ] * [b6810f2] Ignore kdevelop stuff * [7159d74] Disable tests on armhf Checksums-Sha1: 5317dd64c9c9c1c953cf982e6999cbf55f2f1aeb 640440 minc-tools-dbgsym_2.3.00+dfsg-10_i386.deb 3e415e77bafd8af2d1826f7cbe6323ce5e52f70d 8343 minc-tools_2.3.00+dfsg-10_i386.buildinfo ec517799de764bb386c9da2d385d2109b26a8cf0 402844 minc-tools_2.3.00+dfsg-10_i386.deb Checksums-Sha256: 734200fb6786a6257391a07a73ee842cc6ea4f7072b0d2267ea5b773a76d34b6 640440 minc-tools-dbgsym_2.3.00+dfsg-10_i386.deb 1f9a3439996bfb442d8ec1ddb8d399519aa1818d356de20c12ef11a4cb2bd260 8343 minc-tools_2.3.00+dfsg-10_i386.buildinfo 00df32f53d3b122140c125cacf3b2ba483aacc3c4d55a05a1cfe576cbf524694 402844 minc-tools_2.3.00+dfsg-10_i386.deb Files: 2333776623e69287df03f9f4776e2d26 640440 debug optional minc-tools-dbgsym_2.3.00+dfsg-10_i386.deb ea661472546a9619d755b1e83462bbd3 8343 science optional minc-tools_2.3.00+dfsg-10_i386.buildinfo d16a48264897657f1919be680d19adab 402844 science optional minc-tools_2.3.00+dfsg-10_i386.deb Thu May 4 15:18:22 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/minc-tools_2.3.00+dfsg-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/minc-tools_2.3.00+dfsg-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/minc-tools_2.3.00+dfsg-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/b1/minc-tools_2.3.00+dfsg-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.hEcJ7nVc/b2/minc-tools_2.3.00+dfsg-10_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.314s) 0.314s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 4 15:18:23 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Thu May 4 15:18:23 UTC 2023 I: minc-tools from bookworm built successfully and reproducibly on i386. Thu May 4 15:18:24 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 4 15:18:24 UTC 2023 I: Submitting 12K b1/minc-tools_2.3.00+dfsg-10_i386.buildinfo.asc Thu May 4 15:18:25 UTC 2023 I: Submitting 12K b2/minc-tools_2.3.00+dfsg-10_i386.buildinfo.asc Thu May 4 15:18:26 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 4 15:18:26 UTC 2023 I: Done submitting .buildinfo files. Thu May 4 15:18:26 UTC 2023 I: Removing signed minc-tools_2.3.00+dfsg-10_i386.buildinfo.asc files: removed './b1/minc-tools_2.3.00+dfsg-10_i386.buildinfo.asc' removed './b2/minc-tools_2.3.00+dfsg-10_i386.buildinfo.asc'