Tue Apr 18 22:12:17 UTC 2023 I: starting to build pinfish/bookworm/i386 on jenkins on '2023-04-18 22:10' Tue Apr 18 22:12:17 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/6768/console.log Tue Apr 18 22:12:17 UTC 2023 I: Downloading source for bookworm/pinfish=0.1.0+ds-3 --2023-04-18 22:12:18-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pinfish/pinfish_0.1.0%2bds-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2533 (2.5K) [text/prs.lines.tag] Saving to: ‘pinfish_0.1.0+ds-3.dsc’ 0K .. 100% 208M=0s 2023-04-18 22:12:18 (208 MB/s) - ‘pinfish_0.1.0+ds-3.dsc’ saved [2533/2533] Tue Apr 18 22:12:18 UTC 2023 I: pinfish_0.1.0+ds-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pinfish Binary: pinfish, pinfish-examples Architecture: any all Version: 0.1.0+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/nanoporetech/pinfish Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pinfish Vcs-Git: https://salsa.debian.org/med-team/pinfish.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools Package-List: pinfish deb science optional arch=any pinfish-examples deb science optional arch=all Checksums-Sha1: 72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz cf52e7e898ca37f3ee60bd7422d7c13d243a0e8b 6372 pinfish_0.1.0+ds-3.debian.tar.xz Checksums-Sha256: 40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz ccfbad2121f0a06f90f22604ed06a1f36028ea83e037025de2bbb8e7199ecb48 6372 pinfish_0.1.0+ds-3.debian.tar.xz Files: f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz 70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz f8d0970ad74de5231e6083d4711fe599 6372 pinfish_0.1.0+ds-3.debian.tar.xz Go-Import-Path: github.com/nanoporetech/pinfish -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEcCpQUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHvwRAAuwRTkQLfl0cnFrOXdWz+GDxFWJwA CWp5gALDF7HFZ8Onq08mdsVMJ+OxNvXQNp6RXbq8gJyBuCWUYIxCi1Yo1j+Ho86N Mt84ba4LU8tscPZcCcOMBfhVLydeP42HbEeAB/MsbZQsfx+jp9rg4q8GPkcVOMda 5tHoGe4aQTobPwAeR4CdhO9GIO/45XpLwgvjmTHdI7nANNiH2kpP6aXp5/VjgtLD nKN1vMjYeE9KrB6C/lBj4JlvsvsAK4ytBKIboB1p8WN4oHQmNpkkyGqoA3QbrPV1 JOSVDdnvHvHlXsWpYDb/63jeKkLnZqZdpsEki8XjfCbDULhGLKr1qOKlXNPb5ahf OhGub9UAQZg0i0u36uGpAG4/SzlFhzxWX5StXHSAvVRVJAVEekHETvBEjgbkyC0U qmdtrAvqnGr46B65IqTDZylWfNBW8DjDnHxQjfEfuR8xul32/HBP3E6VWxuQLrz5 DPGLhiIDVN5iQHxjEFMXGioU+kDV8OWflVDEVl1uTqAE8RQYQ5lktbm8MWaTXEDo NI5sFPqZZQMiHSH1YnYOQv8L1bGyKy9SZBD0eEjZE1JY17VRfusD3xSr7/mnAlt5 tUEhoS1EdZ3cMOBRK3sbOex7q+h/N9RGl3mDv2Up/osX4fpGOxSZw5vn19po1HTz XwAI6L8I0/FLOUk= =GthV -----END PGP SIGNATURE----- Tue Apr 18 22:12:18 UTC 2023 I: Checking whether the package is not for us Tue Apr 18 22:12:18 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Apr 18 22:12:18 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Apr 18 22:14:20 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 20 16:35:21 -12 2024 I: pbuilder-time-stamp: 1716266121 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pinfish_0.1.0+ds-3.dsc] I: copying [./pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz] I: copying [./pinfish_0.1.0+ds.orig.tar.xz] I: copying [./pinfish_0.1.0+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Aug 17 07:14:28 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pinfish_0.1.0+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting pinfish in pinfish-0.1.0+ds dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-gonum-stat-usage.patch dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/48094/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9fed7732bc0f4d708fdc04f307b9f61a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='48094' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/pbuilderrc_W4y6 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/b1 --logfile b1/build.log pinfish_0.1.0+ds-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Feb 12 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/48094/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however: Package golang-github-biogo-biogo-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-google-uuid-dev; however: Package golang-github-google-uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.19-go{a} golang-1.19-src{a} golang-any{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-creack-pty-dev{a} golang-github-google-uuid-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-pkg-diff-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-go{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After unpacking 528 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.1+b3 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 dh-golang all 1.59 [27.8 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 golang-1.19-src all 1.19.8-2 [18.3 MB] Get: 33 http://deb.debian.org/debian bookworm/main i386 golang-1.19-go i386 1.19.8-2 [61.2 MB] Get: 34 http://deb.debian.org/debian bookworm/main i386 golang-src all 2:1.19~1 [5756 B] Get: 35 http://deb.debian.org/debian bookworm/main i386 golang-go i386 2:1.19~1 [45.0 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 golang-any i386 2:1.19~1 [5872 B] Get: 37 http://deb.debian.org/debian bookworm/main i386 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] Get: 39 http://deb.debian.org/debian bookworm/main i386 golang-github-creack-pty-dev all 1.1.18-1 [9796 B] Get: 40 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 golang-github-pkg-diff-dev all 0.0~git20210226.20ebb0f-1 [93.6 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 golang-github-rogpeppe-go-internal-dev all 1.9.0-1 [117 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 golang-github-kr-pretty-dev all 0.3.0-1 [14.9 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 golang-github-google-uuid-dev all 1.3.0-1 [17.0 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-8 [412 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 58 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libncurses6 i386 6.4-2 [111 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 samtools i386 1.16.1-1 [637 kB] Fetched 102 MB in 1s (89.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.1+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package dh-golang. Preparing to unpack .../30-dh-golang_1.59_all.deb ... Unpacking dh-golang (1.59) ... Selecting previously unselected package golang-1.19-src. Preparing to unpack .../31-golang-1.19-src_1.19.8-2_all.deb ... Unpacking golang-1.19-src (1.19.8-2) ... Selecting previously unselected package golang-1.19-go. Preparing to unpack .../32-golang-1.19-go_1.19.8-2_i386.deb ... Unpacking golang-1.19-go (1.19.8-2) ... Selecting previously unselected package golang-src. Preparing to unpack .../33-golang-src_2%3a1.19~1_all.deb ... Unpacking golang-src (2:1.19~1) ... Selecting previously unselected package golang-go:i386. Preparing to unpack .../34-golang-go_2%3a1.19~1_i386.deb ... Unpacking golang-go:i386 (2:1.19~1) ... Selecting previously unselected package golang-any:i386. Preparing to unpack .../35-golang-any_2%3a1.19~1_i386.deb ... Unpacking golang-any:i386 (2:1.19~1) ... Selecting previously unselected package golang-github-ulikunitz-xz-dev. Preparing to unpack .../36-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ... Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ... Selecting previously unselected package golang-github-biogo-hts-dev. Preparing to unpack .../37-golang-github-biogo-hts-dev_1.4.4+dfsg1-1_all.deb ... Unpacking golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Selecting previously unselected package golang-github-creack-pty-dev. Preparing to unpack .../38-golang-github-creack-pty-dev_1.1.18-1_all.deb ... Unpacking golang-github-creack-pty-dev (1.1.18-1) ... Selecting previously unselected package golang-github-kr-text-dev. Preparing to unpack .../39-golang-github-kr-text-dev_0.2.0-2_all.deb ... Unpacking golang-github-kr-text-dev (0.2.0-2) ... Selecting previously unselected package golang-github-pkg-diff-dev. Preparing to unpack .../40-golang-github-pkg-diff-dev_0.0~git20210226.20ebb0f-1_all.deb ... Unpacking golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Selecting previously unselected package golang-github-rogpeppe-go-internal-dev. Preparing to unpack .../41-golang-github-rogpeppe-go-internal-dev_1.9.0-1_all.deb ... Unpacking golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Selecting previously unselected package golang-github-kr-pretty-dev. Preparing to unpack .../42-golang-github-kr-pretty-dev_0.3.0-1_all.deb ... Unpacking golang-github-kr-pretty-dev (0.3.0-1) ... Selecting previously unselected package golang-gopkg-check.v1-dev. Preparing to unpack .../43-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ... Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Selecting previously unselected package golang-github-biogo-biogo-dev. Preparing to unpack .../44-golang-github-biogo-biogo-dev_1.0.4-1_all.deb ... Unpacking golang-github-biogo-biogo-dev (1.0.4-1) ... Selecting previously unselected package golang-github-google-uuid-dev. Preparing to unpack .../45-golang-github-google-uuid-dev_1.3.0-1_all.deb ... Unpacking golang-github-google-uuid-dev (1.3.0-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../46-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../47-libsasl2-modules-db_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../48-libsasl2-2_2.1.28+dfsg-10_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../49-libldap-2.5-0_2.5.13+dfsg-5_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../50-libnghttp2-14_1.52.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.52.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../51-libpsl5_0.21.2-1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../52-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../53-libssh2-1_1.10.0-3+b1_i386.deb ... Unpacking libssh2-1:i386 (1.10.0-3+b1) ... Selecting previously unselected package libcurl3-gnutls:i386. Preparing to unpack .../54-libcurl3-gnutls_7.88.1-8_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.88.1-8) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../55-libdeflate0_1.14-1_i386.deb ... Unpacking libdeflate0:i386 (1.14-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../56-libhtscodecs2_1.3.0-4_i386.deb ... Unpacking libhtscodecs2:i386 (1.3.0-4) ... Selecting previously unselected package libhts3:i386. Preparing to unpack .../57-libhts3_1.16+ds-3_i386.deb ... Unpacking libhts3:i386 (1.16+ds-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../58-libncurses6_6.4-2_i386.deb ... Unpacking libncurses6:i386 (6.4-2) ... Selecting previously unselected package samtools. Preparing to unpack .../59-samtools_1.16.1-1_i386.deb ... Unpacking samtools (1.16.1-1) ... Setting up libhtscodecs2:i386 (1.3.0-4) ... Setting up libpipeline1:i386 (1.5.7-1) ... Setting up libpsl5:i386 (0.21.2-1) ... Setting up libicu72:i386 (72.1-3) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up golang-github-creack-pty-dev (1.1.18-1) ... Setting up golang-github-pkg-diff-dev (0.0~git20210226.20ebb0f-1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:i386 (1.0.9-2+b6) ... Setting up libnghttp2-14:i386 (1.52.0-1) ... Setting up libmagic1:i386 (1:5.44-3) ... Setting up libdeflate0:i386 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up golang-1.19-src (1.19.8-2) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg-10) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:i386 (6.4-2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up golang-github-google-uuid-dev (1.3.0-1) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up golang-github-rogpeppe-go-internal-dev (1.9.0-1) ... Setting up golang-src (2:1.19~1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.1+b3) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up golang-1.19-go (1.19.8-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up golang-github-kr-pretty-dev (0.3.0-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up golang-go:i386 (2:1.19~1) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up golang-any:i386 (2:1.19~1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:i386 (7.88.1-8) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up golang-github-biogo-biogo-dev (1.0.4-1) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up samtools (1.16.1-1) ... Setting up dh-golang (1.59) ... Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-3_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang dh_auto_clean -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 16 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff internal/goos internal/goarch internal/unsafeheader internal/goexperiment unicode/utf8 internal/cpu runtime/internal/atomic sync/atomic runtime/internal/syscall unicode internal/race crypto/subtle internal/itoa math/bits crypto/internal/subtle encoding internal/abi runtime/internal/math runtime/internal/sys crypto/internal/boring/sig unicode/utf16 internal/nettrace math internal/bytealg runtime internal/reflectlite sync internal/testlog math/rand internal/singleflight runtime/cgo errors sort internal/oserror internal/safefilepath path io vendor/golang.org/x/net/dns/dnsmessage strconv syscall container/heap bytes hash crypto/internal/randutil text/tabwriter strings hash/crc32 crypto reflect github.com/biogo/biogo/feat bufio github.com/biogo/biogo/io/featio github.com/biogo/biogo/feat/gene internal/syscall/execenv internal/syscall/unix time context io/fs internal/poll os internal/fmtsort encoding/binary internal/godebug io/ioutil path/filepath fmt internal/intern encoding/base64 crypto/md5 crypto/cipher net/netip os/exec crypto/internal/boring crypto/sha1 net encoding/csv flag github.com/biogo/biogo/alphabet database/sql/driver encoding/hex log net/url encoding/json compress/flate math/big github.com/biogo/biogo/seq compress/gzip github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq runtime/pprof github.com/biogo/hts/bgzf github.com/biogo/biogo/io/featio/gff github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal github.com/biogo/hts/sam crypto/rand github.com/biogo/hts/bam github.com/nanoporetech/pinfish/spliced_bam2gff github.com/nanoporetech/pinfish/polish_clusters github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/build/pinfish-0.1.0+ds' dh_auto_test cd _build && go test -vet=off -v -p 16 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] ? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files] cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam make[1]: Leaving directory '/build/pinfish-0.1.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/build/pinfish-0.1.0+ds' dh_auto_install -- --no-source cd _build && mkdir -p /build/pinfish-0.1.0\+ds/debian/tmp/usr cd _build && cp -r bin /build/pinfish-0.1.0\+ds/debian/tmp/usr make[1]: Leaving directory '/build/pinfish-0.1.0+ds' dh_install -O--builddirectory=_build -O--buildsystem=golang dh_installdocs -O--builddirectory=_build -O--buildsystem=golang dh_installchangelogs -O--builddirectory=_build -O--buildsystem=golang dh_installman -O--builddirectory=_build -O--buildsystem=golang dh_installsystemduser -O--builddirectory=_build -O--buildsystem=golang dh_perl -O--builddirectory=_build -O--buildsystem=golang dh_link -O--builddirectory=_build -O--buildsystem=golang dh_strip_nondeterminism -O--builddirectory=_build -O--buildsystem=golang dh_compress -O--builddirectory=_build -O--buildsystem=golang dh_fixperms -O--builddirectory=_build -O--buildsystem=golang dh_missing -O--builddirectory=_build -O--buildsystem=golang dh_strip -a -O--builddirectory=_build -O--buildsystem=golang dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -O--builddirectory=_build -O--buildsystem=golang dh_golang -O--builddirectory=_build -O--buildsystem=golang dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-3_i386.deb'. dpkg-deb: building package 'pinfish-dbgsym' in '../pinfish-dbgsym_0.1.0+ds-3_i386.deb'. dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-3_all.deb'. dpkg-genbuildinfo --build=binary -O../pinfish_0.1.0+ds-3_i386.buildinfo dpkg-genchanges --build=binary -O../pinfish_0.1.0+ds-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/48094 and its subdirectories I: Current time: Mon May 20 16:37:18 -12 2024 I: pbuilder-time-stamp: 1716266238 Tue Apr 18 22:14:20 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Tue Apr 18 22:14:20 UTC 2023 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Tue Apr 18 22:23:11 UTC 2023 I: Deleting $TMPDIR on ionos12-i386.debian.net. Tue Apr 18 22:25:11 UTC 2023 I: pinfish_0.1.0+ds-3_i386.changes: Format: 1.8 Date: Tue, 17 Aug 2021 21:33:10 +0530 Source: pinfish Binary: pinfish pinfish-dbgsym pinfish-examples Architecture: i386 all Version: 0.1.0+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pinfish - Collection of tools to annotate genomes using long read transcrip pinfish-examples - Examples and test data for pinfish Changes: pinfish (0.1.0+ds-3) unstable; urgency=medium . * Declare compliance with policy 4.5.1 * Remove d/gitlab-ci.yml, add d/salsa-ci.yml * d/p/do-not-overflow-int.patch: Declare minlen as per arch that we are building on to avoid integer overflow Checksums-Sha1: 1401be015cc81a36584b8b71e5192fcd1d912938 1457716 pinfish-dbgsym_0.1.0+ds-3_i386.deb 9c2fe3a825ce074ac9e505a9686f257bf6241762 179449148 pinfish-examples_0.1.0+ds-3_all.deb 09d2c762c3fc3ce563dada421012cbd68c19bcf2 6633 pinfish_0.1.0+ds-3_i386.buildinfo 6274fa9a1c445a60ab7b15d980532785eb6b42df 1223272 pinfish_0.1.0+ds-3_i386.deb Checksums-Sha256: 2accaf49c7fa1f4d3b7e4faf4f0a6e9d8162aa99bf605e76bf4fb431c8ab4700 1457716 pinfish-dbgsym_0.1.0+ds-3_i386.deb 37d90dc1136d01ea18392878db98e7dcf83fc66107bf6275f35820f0b919740b 179449148 pinfish-examples_0.1.0+ds-3_all.deb 54494603f67bc725e9082c4df7ba077a6aa63d7e998a2a08a64e4e14c8f926a2 6633 pinfish_0.1.0+ds-3_i386.buildinfo ecceb7343ac405926a6e0c92c32c54b7ca9368cd1864f21c0f7ba366dcbd7481 1223272 pinfish_0.1.0+ds-3_i386.deb Files: 79fb851968f2459917658e3efe2facd4 1457716 debug optional pinfish-dbgsym_0.1.0+ds-3_i386.deb d63c7464eb3ee16f978451ac9925e23c 179449148 science optional pinfish-examples_0.1.0+ds-3_all.deb 1a32ade3ef4e1005bcb734d6fdb0c754 6633 science optional pinfish_0.1.0+ds-3_i386.buildinfo 4551af5657208530b5df547eec2de731 1223272 science optional pinfish_0.1.0+ds-3_i386.deb Tue Apr 18 22:25:13 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/pinfish_0.1.0+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/pinfish_0.1.0+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/pinfish_0.1.0+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/b1/pinfish_0.1.0+ds-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.g8FuSadj/b2/pinfish_0.1.0+ds-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.657s) 2.657s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 2.273s) 2.272s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Tue Apr 18 22:25:17 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 18 22:25:17 UTC 2023 I: pinfish from bookworm built successfully and reproducibly on i386. Tue Apr 18 22:25:18 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Apr 18 22:25:18 UTC 2023 I: Submitting 8.0K b1/pinfish_0.1.0+ds-3_i386.buildinfo.asc Tue Apr 18 22:25:19 UTC 2023 I: Submitting 8.0K b2/pinfish_0.1.0+ds-3_i386.buildinfo.asc Tue Apr 18 22:25:20 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 18 22:25:20 UTC 2023 I: Done submitting .buildinfo files. Tue Apr 18 22:25:20 UTC 2023 I: Removing signed pinfish_0.1.0+ds-3_i386.buildinfo.asc files: removed './b1/pinfish_0.1.0+ds-3_i386.buildinfo.asc' removed './b2/pinfish_0.1.0+ds-3_i386.buildinfo.asc'