Wed Apr 26 13:21:34 UTC 2023 I: starting to build prodigal/bookworm/i386 on jenkins on '2023-04-26 13:21' Wed Apr 26 13:21:34 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/11855/console.log Wed Apr 26 13:21:34 UTC 2023 I: Downloading source for bookworm/prodigal=1:2.6.3-6 --2023-04-26 13:21:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/prodigal/prodigal_2.6.3-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1992 (1.9K) [text/prs.lines.tag] Saving to: ‘prodigal_2.6.3-6.dsc’ 0K . 100% 156M=0s 2023-04-26 13:21:34 (156 MB/s) - ‘prodigal_2.6.3-6.dsc’ saved [1992/1992] Wed Apr 26 13:21:34 UTC 2023 I: prodigal_2.6.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: prodigal Binary: prodigal Architecture: any Version: 1:2.6.3-6 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://prodigal.ornl.gov/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/prodigal Vcs-Git: https://salsa.debian.org/med-team/prodigal.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: prodigal deb science optional arch=any Checksums-Sha1: 1259e999193cd0c095935baebfb8bcb0233e850f 610934 prodigal_2.6.3.orig.tar.gz 281a30ce91f8775880a5d92d210506e6522921b0 49304 prodigal_2.6.3-6.debian.tar.xz Checksums-Sha256: 89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f 610934 prodigal_2.6.3.orig.tar.gz e47e360e0d4a97a361ed1cb6c294072a9d847f2a28a88e7d406122b4fa9c8583 49304 prodigal_2.6.3-6.debian.tar.xz Files: 5181809fdb740e9a675cfdbb6c038466 610934 prodigal_2.6.3.orig.tar.gz 2da877285635f03bf298eff790734a8e 49304 prodigal_2.6.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOPQJ0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGPxQ/9GZ8yzKQncHykka5SpuzYVNHcnzUcJfrt uYbBAAKjEn9UiRdo+Cu3HliWVVIDbS3LFNmbIuND1kXpyt9GQl15/5pD3MnqfsAB nog9dYhKoNo6LqjlLGx/avmlcTuJzH7lVFPPDzanaPFYd6ueTfPdkgYBS+JirleM RgmD4xx4sPltoC9660KaNz0U6BOAhU+sY9/SErhUHezSp0D8e+FKowCqVdpazItb 9uxDTUyksgUgwgi/fYD6fhLYZJRSgbCjxGQoc4eOmIYzvgDMPzF+qBrPUMCvdZpc rX6Oup4wPciBpPKlWDpotMoefdlZqiAK2bKeZOidAvIX8P43kjgx9lmguc6ahKTU hFZOtUT3nYYUm8DTf1PJz3y+2CnIPlsn6YlKGNVmimDXJmBxsdn2sQ25ag9npLMu FvEnN0AliLVB6yk+PO4fU8OUr9codpsRZUEcC7rhxxDnb3Tzne6H01pI87SEovyr CxvzPH8uf/LDhZqFQrUl6D0xPoL/boR2cTuIq4J59CBUmkCRCOyStHO26xCK4D8W vz6kKIvFBrGcGNg8Bte64mJrs4hJPeo46x3KtiGZB/whi6HuMSnduElsX7UCWOkq sT7qRO/W7MbwUXtlubbbcD8AEBnX6rVnGJKCxRRg5aPHNGUstvjinNk55w9LjTf3 7d//QfRp1tQ= =QE7B -----END PGP SIGNATURE----- Wed Apr 26 13:21:34 UTC 2023 I: Checking whether the package is not for us Wed Apr 26 13:21:34 UTC 2023 I: Starting 1st build on remote node ionos6-i386.debian.net. Wed Apr 26 13:21:34 UTC 2023 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Wed Apr 26 13:35:57 UTC 2023 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 28 07:44:36 -12 2024 I: pbuilder-time-stamp: 1716925476 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [prodigal_2.6.3-6.dsc] I: copying [./prodigal_2.6.3.orig.tar.gz] I: copying [./prodigal_2.6.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 01:16:13 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./prodigal_2.6.3-6.dsc: no acceptable signature found dpkg-source: info: extracting prodigal in prodigal-2.6.3 dpkg-source: info: unpacking prodigal_2.6.3.orig.tar.gz dpkg-source: info: unpacking prodigal_2.6.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_hardcoded_O3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/44958/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='82014b4c59d04728a113dd72520c2c16' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='44958' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/pbuilderrc_KOGS --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/b1 --logfile b1/build.log prodigal_2.6.3-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 2023 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 2023 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 2023 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 2022 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 2023 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 2023 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 2023 more -rwsr-xr-x 1 root root 58912 Mar 22 2023 mount -rwxr-xr-x 1 root root 13856 Mar 22 2023 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 2023 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 2023 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 2023 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/44958/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 72.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Fetched 19.0 MB in 0s (77.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../02-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/prodigal-2.6.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../prodigal_2.6.3-6_source.changes dpkg-buildpackage: info: source package prodigal dpkg-buildpackage: info: source version 1:2.6.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j16 distclean make[1]: Entering directory '/build/prodigal-2.6.3' rm -f bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o rm -f prodigal make[1]: Leaving directory '/build/prodigal-2.6.3' debian/rules override_dh_clean make[1]: Entering directory '/build/prodigal-2.6.3' dh_clean rm -f prodigal.1 make[1]: Leaving directory '/build/prodigal-2.6.3' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/prodigal-2.6.3' gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o bitmap.o bitmap.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o dprog.o dprog.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o gene.o gene.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o main.o main.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o metagenomic.o metagenomic.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o node.o node.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o sequence.o sequence.c gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -c -o training.o training.c gene.c: In function 'record_gene_data': gene.c:298:9: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 298 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 | genes[i].gene_data, sd_string[nod[ndx].rbs[0]], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 | sd_spacer[nod[ndx].rbs[0]]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:303:9: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 303 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 | genes[i].gene_data, sd_string[nod[ndx].rbs[1]], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 | sd_spacer[nod[ndx].rbs[1]]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:309:12: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 309 | else sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%dbp", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 | genes[i].gene_data, qt, nod[ndx].mot.spacer); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:307:9: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 307 | sprintf(genes[i].gene_data, "%srbs_motif=None;rbs_spacer=None", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 | genes[i].gene_data); | ~~~~~~~~~~~~~~~~~~~ gene.c:290:9: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 290 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 | genes[i].gene_data, sd_string[nod[ndx].rbs[1]], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 | sd_spacer[nod[ndx].rbs[1]]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:286:9: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 286 | sprintf(genes[i].gene_data, "%srbs_motif=%s;rbs_spacer=%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 | genes[i].gene_data, sd_string[nod[ndx].rbs[0]], | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 | sd_spacer[nod[ndx].rbs[0]]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:312:5: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 312 | sprintf(genes[i].gene_data, "%s;gc_cont=%.3f", genes[i].gene_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 | nod[ndx].gc_cont); | ~~~~~~~~~~~~~~~~~ gene.c:322:5: warning: 'sprintf' argument 3 overlaps destination object '' [-Wrestrict] 322 | sprintf(genes[i].score_data, "%stscore=%.2f;", genes[i].score_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 | nod[ndx].tscore); | ~~~~~~~~~~~~~~~~ gene.c: In function 'print_genes': gene.c:347:26: warning: 'model="' directive writing 7 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 347 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ gene.c:347:5: note: 'sprintf' output 10 or more bytes (assuming 10009) into a destination of size 10000 347 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:347:5: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] gene.c:335:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 335 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ gene.c:343:26: warning: 'model="Ab initio";' directive writing 18 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 343 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~ gene.c:343:5: note: 'sprintf' output between 19 and 10018 bytes into a destination of size 10000 343 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:343:5: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] gene.c:335:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 335 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ gene.c:349:24: warning: 'gc_cont=' directive writing 8 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ gene.c:349:21: note: assuming directive output of 4 bytes 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:349:3: note: 'sprintf' output between 37 and 10366 bytes into a destination of size 10000 349 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 | tinf->gc*100.0, tinf->trans_table, tinf->uses_sd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gene.c:349:3: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] gene.c:335:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 335 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ node.c: In function 'write_start_file': node.c:1426:26: warning: 'model="' directive writing 7 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1426 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~ node.c:1426:5: note: 'sprintf' output 10 or more bytes (assuming 10009) into a destination of size 10000 1426 | sprintf(run_data, "%smodel=\"%s\";", run_data, mdesc); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1426:5: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] node.c:1414:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 1414 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ node.c:1422:26: warning: 'model="Ab initio";' directive writing 18 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1422 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~ node.c:1422:5: note: 'sprintf' output between 19 and 10018 bytes into a destination of size 10000 1422 | sprintf(run_data, "%smodel=\"Ab initio\";", run_data); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1422:5: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] node.c:1414:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 1414 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ node.c:1428:24: warning: 'gc_cont=' directive writing 8 bytes into a region of size between 1 and 10000 [-Wformat-overflow=] 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~ node.c:1428:21: note: assuming directive output of 4 bytes 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1428:3: note: 'sprintf' output between 37 and 10366 bytes into a destination of size 10000 1428 | sprintf(run_data, "%sgc_cont=%.2f;transl_table=%d;uses_sd=%d", run_data, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1429 | tinf->gc*100.0, tinf->trans_table, tinf->uses_sd); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ node.c:1428:3: warning: 'sprintf' argument 3 overlaps destination object 'run_data' [-Wrestrict] node.c:1414:30: note: destination object referenced by 'restrict'-qualified argument 1 was declared here 1414 | char seq_data[MAX_LINE*2], run_data[MAX_LINE]; | ^~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/prodigal-2.6.3=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -pedantic -Wall -o prodigal bitmap.o dprog.o gene.o main.o metagenomic.o node.o sequence.o training.o -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/prodigal-2.6.3' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/prodigal-2.6.3' echo "Do not try to install to /usr/local" Do not try to install to /usr/local make[1]: Leaving directory '/build/prodigal-2.6.3' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'prodigal' in '../prodigal_2.6.3-6_i386.deb'. dpkg-deb: building package 'prodigal-dbgsym' in '../prodigal-dbgsym_2.6.3-6_i386.deb'. dpkg-genbuildinfo --build=binary -O../prodigal_2.6.3-6_i386.buildinfo dpkg-genchanges --build=binary -O../prodigal_2.6.3-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/44958 and its subdirectories I: Current time: Tue May 28 07:58:57 -12 2024 I: pbuilder-time-stamp: 1716926337 Wed Apr 26 13:35:58 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Wed Apr 26 13:35:58 UTC 2023 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Wed Apr 26 13:56:51 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. Wed Apr 26 13:56:51 UTC 2023 I: prodigal_2.6.3-6_i386.changes: Format: 1.8 Date: Tue, 06 Dec 2022 14:00:03 +0100 Source: prodigal Binary: prodigal prodigal-dbgsym Architecture: i386 Version: 1:2.6.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: prodigal - Microbial (bacterial and archaeal) gene finding program Changes: prodigal (1:2.6.3-6) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 31b596992317e1ff85cb6b6496b3dddc65d57da5 74396 prodigal-dbgsym_2.6.3-6_i386.deb 990e64af6a876ef5240dc9c84fcc513973c51a59 5076 prodigal_2.6.3-6_i386.buildinfo 77c000447f2297c49c272e8954039c23410726ad 743348 prodigal_2.6.3-6_i386.deb Checksums-Sha256: 70d4480347e60bea8ad1cba3af379b0126628df81ba2e2ce3387666a6e805500 74396 prodigal-dbgsym_2.6.3-6_i386.deb f75b30823c7bb93e41d76ce9e91f5dddbcb3da4450b381e381cc818d1fbfb09d 5076 prodigal_2.6.3-6_i386.buildinfo ab5dad0766b4327de1f2eaf16e9310686848260c1b1a20254c727147f5842299 743348 prodigal_2.6.3-6_i386.deb Files: 357bfde5c4f574cd7d13cdb2b55c5918 74396 debug optional prodigal-dbgsym_2.6.3-6_i386.deb 2e5b16fd0fbf5563ba7c6274d705a02b 5076 science optional prodigal_2.6.3-6_i386.buildinfo fc2ef53f2be57de904a4640db9c9dd1a 743348 science optional prodigal_2.6.3-6_i386.deb Wed Apr 26 13:56:52 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/prodigal_2.6.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/prodigal_2.6.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/prodigal_2.6.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/b1/prodigal_2.6.3-6_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.nECNzUzW/b2/prodigal_2.6.3-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed Apr 26 13:56:53 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 26 13:56:53 UTC 2023 I: prodigal from bookworm built successfully and reproducibly on i386. Wed Apr 26 13:56:56 UTC 2023 I: Submitting .buildinfo files to external archives: Wed Apr 26 13:56:56 UTC 2023 I: Submitting 8.0K b1/prodigal_2.6.3-6_i386.buildinfo.asc Wed Apr 26 13:56:57 UTC 2023 I: Submitting 8.0K b2/prodigal_2.6.3-6_i386.buildinfo.asc Wed Apr 26 13:56:57 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 26 13:56:58 UTC 2023 I: Done submitting .buildinfo files. Wed Apr 26 13:56:58 UTC 2023 I: Removing signed prodigal_2.6.3-6_i386.buildinfo.asc files: removed './b1/prodigal_2.6.3-6_i386.buildinfo.asc' removed './b2/prodigal_2.6.3-6_i386.buildinfo.asc'