Thu May 11 16:56:49 UTC 2023 I: starting to build python-gffutils/bookworm/i386 on jenkins on '2023-05-11 16:56' Thu May 11 16:56:49 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/11870/console.log Thu May 11 16:56:49 UTC 2023 I: Downloading source for bookworm/python-gffutils=0.11.1-3 --2023-05-11 16:56:49-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-gffutils/python-gffutils_0.11.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2494 (2.4K) [text/prs.lines.tag] Saving to: ‘python-gffutils_0.11.1-3.dsc’ 0K .. 100% 188M=0s 2023-05-11 16:56:49 (188 MB/s) - ‘python-gffutils_0.11.1-3.dsc’ saved [2494/2494] Thu May 11 16:56:49 UTC 2023 I: python-gffutils_0.11.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-gffutils Binary: python3-gffutils Architecture: all Version: 0.11.1-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Steffen Moeller , Étienne Mollier Homepage: https://daler.github.io/gffutils Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-gffutils Vcs-Git: https://salsa.debian.org/med-team/python-gffutils.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, bedtools, python3-all, python3-setuptools, python3-simplejson, python3-six, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man Package-List: python3-gffutils deb science optional arch=all Checksums-Sha1: f49ce43ed234cecc347c5a66b0fea913f084c585 1605677 python-gffutils_0.11.1.orig.tar.gz e8455b4af71300920f0baa6a687c9b44760d5b16 6852 python-gffutils_0.11.1-3.debian.tar.xz Checksums-Sha256: 6fffc0abb63c7ceb6b6c9cb832bd30c90610275ab3cf526858d1acc1b2bb0cc5 1605677 python-gffutils_0.11.1.orig.tar.gz d3b87ad8cd5ecd21a98efda0a5767df0e0bda0c2b9caddfd40c2dda3d77ba831 6852 python-gffutils_0.11.1-3.debian.tar.xz Files: 8ff73bd77f5eb9307cae500e6889996e 1605677 python-gffutils_0.11.1.orig.tar.gz dc22f459340173abd101bc8d13322848 6852 python-gffutils_0.11.1-3.debian.tar.xz Dgit: 5ffd57ae338b177fd540c9f152cae94500d22e4c debian archive/debian/0.11.1-3 https://git.dgit.debian.org/python-gffutils -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmO5iIYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoTVw//WFDVusifcg5YDYGv5Z945Ow6lzu5 pJVRdH74C0qBRZv0zSky3CIlud7kknaiSIJJG1T4SbiKI8GhoH4EJYM7JoClS2C7 ftWoKniWKCF48y+IK9UqUX7X6hDF4FyesrQbmy+Mpn6PfbpQX9svbFWxs/AP1KKx a44Y8rgxM6/NoeUi9zQhmyRUj2hBX/MT6hSi0zX9pmEIKAPSQNfwSFz0FGevie2j Cg91txgAlBf3eJbWDoXgpDHk2HlWzbppNDk1K2502uKHgi0Ii1JChJIR1mkNLKXh 3bWcWh8OQPWyuRTagmhNl0w7VCm+bgPahT+5RuIXGKwUK0P1tZ5QRld6eRBbjf2Q CFwnleqGjsV853orzETp2padXLAXbebrSHP349xuBllEhop6TSt4CxD1+SrYsnaD 6C/I3ZWmVuCO1bgXTsGsu2cJSSu0OAMz9LaKnmP4+1BtXvlVn9csLRszRPdY2t0N C12SP7lHzv+k+Mc+00+qTwQYuoNc7Q/Auq5WLvJbGCzHRC2RZN4WqAQSPpzzaMNQ eoTT1g9tAQyueEL3o+qktph+LN2zZKzT6wngeisi7B6uufW/+TyHMj3HiNC4I6wL OIsbCkKCg6ihRKzsT4xVHMAwsJIpOhRMMeIdPJOxVcqZuCDjml6wJLeY0eEr67Zb Fg+h9IEbrr2IxT8= =p58+ -----END PGP SIGNATURE----- Thu May 11 16:56:49 UTC 2023 I: Checking whether the package is not for us Thu May 11 16:56:50 UTC 2023 I: Starting 1st build on remote node ionos2-i386.debian.net. Thu May 11 16:56:50 UTC 2023 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Thu May 11 17:00:12 UTC 2023 I: Deleting $TMPDIR on ionos2-i386.debian.net. W: cgroups are not available on the host, not using them. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Thu May 11 04:56:52 -12 2023 I: pbuilder-time-stamp: 1683824212 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-gffutils_0.11.1-3.dsc] I: copying [./python-gffutils_0.11.1.orig.tar.gz] I: copying [./python-gffutils_0.11.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jan 7 02:58:14 2023 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.11.1-3.dsc: no acceptable signature found dpkg-source: info: extracting python-gffutils in python-gffutils-0.11.1 dpkg-source: info: unpacking python-gffutils_0.11.1.orig.tar.gz dpkg-source: info: unpacking python-gffutils_0.11.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying newer_bedtools dpkg-source: info: applying python3 dpkg-source: info: applying pytest I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4192/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4192' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/pbuilderrc_TbgM --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/b1 --logfile b1/build.log python-gffutils_0.11.1-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 5.10.0-22-686-pae #1 SMP Debian 5.10.178-3 (2023-04-22) i686 GNU/Linux I: ls -l /bin total 6036 -rwxr-xr-x 1 root root 1408088 Apr 23 09:24 bash -rwxr-xr-x 3 root root 38404 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 38404 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 17892 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 42920 Sep 20 2022 cat -rwxr-xr-x 1 root root 79816 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 67496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 79816 Sep 20 2022 chown -rwxr-xr-x 1 root root 162024 Sep 20 2022 cp -rwxr-xr-x 1 root root 136916 Jan 5 01:20 dash -rwxr-xr-x 1 root root 137160 Sep 20 2022 date -rwxr-xr-x 1 root root 100364 Sep 20 2022 dd -rwxr-xr-x 1 root root 108940 Sep 20 2022 df -rwxr-xr-x 1 root root 162152 Sep 20 2022 dir -rwxr-xr-x 1 root root 87760 Mar 22 22:20 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 38760 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 34664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 84272 Mar 22 22:20 findmnt -rwsr-xr-x 1 root root 30240 Mar 22 20:38 fusermount -rwxr-xr-x 1 root root 218680 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 9 2022 gzip -rwxr-xr-x 1 root root 21916 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 75756 Sep 20 2022 ln -rwxr-xr-x 1 root root 55600 Mar 22 23:43 login -rwxr-xr-x 1 root root 162152 Sep 20 2022 ls -rwxr-xr-x 1 root root 214568 Mar 22 22:20 lsblk -rwxr-xr-x 1 root root 96328 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 84008 Sep 20 2022 mknod -rwxr-xr-x 1 root root 38792 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 63016 Mar 22 22:20 more -rwsr-xr-x 1 root root 58912 Mar 22 22:20 mount -rwxr-xr-x 1 root root 13856 Mar 22 22:20 mountpoint -rwxr-xr-x 1 root root 157932 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38792 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:24 rbash -> bash -rwxr-xr-x 1 root root 51080 Sep 20 2022 readlink -rwxr-xr-x 1 root root 75720 Sep 20 2022 rm -rwxr-xr-x 1 root root 51080 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 22308 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 133224 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 38760 Sep 20 2022 sleep -rwxr-xr-x 1 root root 87976 Sep 20 2022 stty -rwsr-xr-x 1 root root 83492 Mar 22 22:20 su -rwxr-xr-x 1 root root 38792 Sep 20 2022 sync -rwxr-xr-x 1 root root 598456 Apr 6 02:25 tar -rwxr-xr-x 1 root root 13860 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 120776 Sep 20 2022 touch -rwxr-xr-x 1 root root 34664 Sep 20 2022 true -rwxr-xr-x 1 root root 17892 Mar 22 20:38 ulockmgr_server -rwsr-xr-x 1 root root 30236 Mar 22 22:20 umount -rwxr-xr-x 1 root root 38760 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 162152 Sep 20 2022 vdir -rwxr-xr-x 1 root root 71216 Mar 22 22:20 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4192/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, bedtools, python3-all, python3-setuptools, python3-simplejson, python3-six, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-simplejson; however: Package python3-simplejson is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-argcomplete; however: Package python3-argcomplete is not installed. pbuilder-satisfydepends-dummy depends on python3-argh; however: Package python3-argh is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however: Package python3-pyfaidx is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pybedtools; however: Package python3-pybedtools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-argcomplete{a} python3-argh{a} python3-attr{a} python3-biopython{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pybedtools{a} python3-pyfaidx{a} python3-pysam{a} python3-pytest{a} python3-renderpm{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3-simplejson{a} python3-six{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 73.4 MB of archives. After unpacking 232 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main i386 liblocale-gettext-perl i386 1.07-5 [15.5 kB] Get: 2 http://deb.debian.org/debian bookworm/main i386 libpython3.11-minimal i386 3.11.2-6 [813 kB] Get: 3 http://deb.debian.org/debian bookworm/main i386 libexpat1 i386 2.5.0-1 [103 kB] Get: 4 http://deb.debian.org/debian bookworm/main i386 python3.11-minimal i386 3.11.2-6 [2130 kB] Get: 5 http://deb.debian.org/debian bookworm/main i386 python3-minimal i386 3.11.2-1+b1 [26.3 kB] Get: 6 http://deb.debian.org/debian bookworm/main i386 media-types all 10.0.0 [26.1 kB] Get: 7 http://deb.debian.org/debian bookworm/main i386 mailcap all 3.70+nmu1 [32.0 kB] Get: 8 http://deb.debian.org/debian bookworm/main i386 mime-support all 3.66 [10.9 kB] Get: 9 http://deb.debian.org/debian bookworm/main i386 readline-common all 8.2-1.3 [69.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main i386 libreadline8 i386 8.2-1.3 [171 kB] Get: 11 http://deb.debian.org/debian bookworm/main i386 libpython3.11-stdlib i386 3.11.2-6 [1799 kB] Get: 12 http://deb.debian.org/debian bookworm/main i386 python3.11 i386 3.11.2-6 [572 kB] Get: 13 http://deb.debian.org/debian bookworm/main i386 libpython3-stdlib i386 3.11.2-1+b1 [9308 B] Get: 14 http://deb.debian.org/debian bookworm/main i386 python3 i386 3.11.2-1+b1 [26.3 kB] Get: 15 http://deb.debian.org/debian bookworm/main i386 sgml-base all 1.31 [15.4 kB] Get: 16 http://deb.debian.org/debian bookworm/main i386 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 17 http://deb.debian.org/debian bookworm/main i386 libmagic-mgc i386 1:5.44-3 [305 kB] Get: 18 http://deb.debian.org/debian bookworm/main i386 libmagic1 i386 1:5.44-3 [114 kB] Get: 19 http://deb.debian.org/debian bookworm/main i386 file i386 1:5.44-3 [42.5 kB] Get: 20 http://deb.debian.org/debian bookworm/main i386 gettext-base i386 0.21-12 [162 kB] Get: 21 http://deb.debian.org/debian bookworm/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 22 http://deb.debian.org/debian bookworm/main i386 groff-base i386 1.22.4-10 [932 kB] Get: 23 http://deb.debian.org/debian bookworm/main i386 bsdextrautils i386 2.38.1-5+b1 [90.3 kB] Get: 24 http://deb.debian.org/debian bookworm/main i386 libpipeline1 i386 1.5.7-1 [40.0 kB] Get: 25 http://deb.debian.org/debian bookworm/main i386 man-db i386 2.11.2-2 [1397 kB] Get: 26 http://deb.debian.org/debian bookworm/main i386 m4 i386 1.4.19-3 [294 kB] Get: 27 http://deb.debian.org/debian bookworm/main i386 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian bookworm/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian bookworm/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian bookworm/main i386 autopoint all 0.21-12 [495 kB] Get: 31 http://deb.debian.org/debian bookworm/main i386 bedtools i386 2.30.0+dfsg-3 [734 kB] Get: 32 http://deb.debian.org/debian bookworm/main i386 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 33 http://deb.debian.org/debian bookworm/main i386 libtool all 2.4.7-5 [517 kB] Get: 34 http://deb.debian.org/debian bookworm/main i386 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian bookworm/main i386 libsub-override-perl all 0.09-4 [9304 B] Get: 37 http://deb.debian.org/debian bookworm/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 38 http://deb.debian.org/debian bookworm/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 39 http://deb.debian.org/debian bookworm/main i386 libelf1 i386 0.188-2.1 [179 kB] Get: 40 http://deb.debian.org/debian bookworm/main i386 dwz i386 0.15-1 [118 kB] Get: 41 http://deb.debian.org/debian bookworm/main i386 libicu72 i386 72.1-3 [9541 kB] Get: 42 http://deb.debian.org/debian bookworm/main i386 libxml2 i386 2.9.14+dfsg-1.2 [720 kB] Get: 43 http://deb.debian.org/debian bookworm/main i386 gettext i386 0.21-12 [1311 kB] Get: 44 http://deb.debian.org/debian bookworm/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian bookworm/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian bookworm/main i386 debhelper all 13.11.4 [942 kB] Get: 47 http://deb.debian.org/debian bookworm/main i386 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 48 http://deb.debian.org/debian bookworm/main i386 python3-distutils all 3.11.2-3 [131 kB] Get: 49 http://deb.debian.org/debian bookworm/main i386 dh-python all 5.20230130 [104 kB] Get: 50 http://deb.debian.org/debian bookworm/main i386 libfontenc1 i386 1:1.1.4-1 [24.5 kB] Get: 51 http://deb.debian.org/debian bookworm/main i386 libbrotli1 i386 1.0.9-2+b6 [275 kB] Get: 52 http://deb.debian.org/debian bookworm/main i386 libpng16-16 i386 1.6.39-2 [283 kB] Get: 53 http://deb.debian.org/debian bookworm/main i386 libfreetype6 i386 2.12.1+dfsg-5 [410 kB] Get: 54 http://deb.debian.org/debian bookworm/main i386 x11-common all 1:7.7+23 [252 kB] Get: 55 http://deb.debian.org/debian bookworm/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 56 http://deb.debian.org/debian bookworm/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 57 http://deb.debian.org/debian bookworm/main i386 fonts-urw-base35 all 20200910-7 [10.8 MB] Get: 58 http://deb.debian.org/debian bookworm/main i386 help2man i386 1.49.3 [198 kB] Get: 59 http://deb.debian.org/debian bookworm/main i386 libblas3 i386 3.11.0-2 [139 kB] Get: 60 http://deb.debian.org/debian bookworm/main i386 libbsd0 i386 0.11.7-2 [121 kB] Get: 61 http://deb.debian.org/debian bookworm/main i386 libsasl2-modules-db i386 2.1.28+dfsg-10 [21.4 kB] Get: 62 http://deb.debian.org/debian bookworm/main i386 libsasl2-2 i386 2.1.28+dfsg-10 [62.7 kB] Get: 63 http://deb.debian.org/debian bookworm/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5 [196 kB] Get: 64 http://deb.debian.org/debian bookworm/main i386 libnghttp2-14 i386 1.52.0-1 [79.8 kB] Get: 65 http://deb.debian.org/debian bookworm/main i386 libpsl5 i386 0.21.2-1 [59.3 kB] Get: 66 http://deb.debian.org/debian bookworm/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 67 http://deb.debian.org/debian bookworm/main i386 libssh2-1 i386 1.10.0-3+b1 [187 kB] Get: 68 http://deb.debian.org/debian bookworm/main i386 libcurl3-gnutls i386 7.88.1-9 [412 kB] Get: 69 http://deb.debian.org/debian bookworm/main i386 libdeflate0 i386 1.14-1 [57.5 kB] Get: 70 http://deb.debian.org/debian bookworm/main i386 libfribidi0 i386 1.0.8-2.1 [65.6 kB] Get: 71 http://deb.debian.org/debian bookworm/main i386 libgfortran5 i386 12.2.0-14 [698 kB] Get: 72 http://deb.debian.org/debian bookworm/main i386 libglib2.0-0 i386 2.74.6-2 [1467 kB] Get: 73 http://deb.debian.org/debian bookworm/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 74 http://deb.debian.org/debian bookworm/main i386 libharfbuzz0b i386 6.0.0+dfsg-3 [1966 kB] Get: 75 http://deb.debian.org/debian bookworm/main i386 libhtscodecs2 i386 1.3.0-4 [67.4 kB] Get: 76 http://deb.debian.org/debian bookworm/main i386 libhts3 i386 1.16+ds-3 [469 kB] Get: 77 http://deb.debian.org/debian bookworm/main i386 libimagequant0 i386 2.17.0-1 [32.9 kB] Get: 78 http://deb.debian.org/debian bookworm/main i386 libjbig0 i386 2.1-6.1 [31.6 kB] Get: 79 http://deb.debian.org/debian bookworm/main i386 libjpeg62-turbo i386 1:2.1.5-2 [169 kB] Get: 80 http://deb.debian.org/debian bookworm/main i386 liblapack3 i386 3.11.0-2 [2092 kB] Get: 81 http://deb.debian.org/debian bookworm/main i386 liblcms2-2 i386 2.14-2 [165 kB] Get: 82 http://deb.debian.org/debian bookworm/main i386 liblerc4 i386 4.0.0+ds-2 [181 kB] Get: 83 http://deb.debian.org/debian bookworm/main i386 libopenjp2-7 i386 2.5.0-1+b1 [196 kB] Get: 84 http://deb.debian.org/debian bookworm/main i386 libraqm0 i386 0.7.0-4.1 [11.1 kB] Get: 85 http://deb.debian.org/debian bookworm/main i386 libwebp7 i386 1.2.4-0.1 [293 kB] Get: 86 http://deb.debian.org/debian bookworm/main i386 libtiff6 i386 4.5.0-5 [332 kB] Get: 87 http://deb.debian.org/debian bookworm/main i386 libwebpdemux2 i386 1.2.4-0.1 [99.7 kB] Get: 88 http://deb.debian.org/debian bookworm/main i386 libwebpmux3 i386 1.2.4-0.1 [111 kB] Get: 89 http://deb.debian.org/debian bookworm/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 90 http://deb.debian.org/debian bookworm/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 91 http://deb.debian.org/debian bookworm/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 92 http://deb.debian.org/debian bookworm/main i386 python3-all i386 3.11.2-1+b1 [1056 B] Get: 93 http://deb.debian.org/debian bookworm/main i386 python3-argcomplete all 2.0.0-1 [34.7 kB] Get: 94 http://deb.debian.org/debian bookworm/main i386 python3-argh all 0.26.2-2 [25.3 kB] Get: 95 http://deb.debian.org/debian bookworm/main i386 python3-attr all 22.2.0-1 [65.4 kB] Get: 96 http://deb.debian.org/debian bookworm/main i386 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 97 http://deb.debian.org/debian bookworm/main i386 python3-numpy i386 1:1.24.2-1 [6115 kB] Get: 98 http://deb.debian.org/debian bookworm/main i386 python3-renderpm i386 3.6.12-1+b1 [81.4 kB] Get: 99 http://deb.debian.org/debian bookworm/main i386 python3-reportlab-accel i386 3.6.12-1+b1 [39.4 kB] Get: 100 http://deb.debian.org/debian bookworm/main i386 python3-pil i386 9.4.0-1.1+b1 [473 kB] Get: 101 http://deb.debian.org/debian bookworm/main i386 python3-reportlab all 3.6.12-1 [564 kB] Get: 102 http://deb.debian.org/debian bookworm/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 103 http://deb.debian.org/debian bookworm/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 104 http://deb.debian.org/debian bookworm/main i386 python3-biopython i386 1.80+dfsg-4+b1 [1589 kB] Get: 105 http://deb.debian.org/debian bookworm/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 106 http://deb.debian.org/debian bookworm/main i386 python3-more-itertools all 8.10.0-2 [53.0 kB] Get: 107 http://deb.debian.org/debian bookworm/main i386 python3-packaging all 23.0-1 [32.5 kB] Get: 108 http://deb.debian.org/debian bookworm/main i386 python3-pluggy all 1.0.0+repack-1 [19.7 kB] Get: 109 http://deb.debian.org/debian bookworm/main i386 python3-py all 1.11.0-1 [89.2 kB] Get: 110 http://deb.debian.org/debian bookworm/main i386 python3-pysam i386 0.20.0+ds-3+b1 [1708 kB] Get: 111 http://deb.debian.org/debian bookworm/main i386 python3-six all 1.16.0-4 [17.5 kB] Get: 112 http://deb.debian.org/debian bookworm/main i386 python3-pybedtools i386 0.9.0-4+b1 [12.2 MB] Get: 113 http://deb.debian.org/debian bookworm/main i386 python3-pyfaidx all 0.7.1-2 [28.0 kB] Get: 114 http://deb.debian.org/debian bookworm/main i386 python3-pytest all 7.2.1-2 [236 kB] Get: 115 http://deb.debian.org/debian bookworm/main i386 python3-setuptools all 66.1.1-1 [521 kB] Get: 116 http://deb.debian.org/debian bookworm/main i386 python3-simplejson i386 3.18.3-1 [61.0 kB] Fetched 73.4 MB in 14s (5121 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19604 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-5_i386.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.2-6_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.2-6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-1_i386.deb ... Unpacking libexpat1:i386 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.2-6_i386.deb ... Unpacking python3.11-minimal (3.11.2-6) ... Setting up libpython3.11-minimal:i386 (3.11.2-6) ... Setting up libexpat1:i386 (2.5.0-1) ... Setting up python3.11-minimal (3.11.2-6) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19934 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.2-1+b1_i386.deb ... Unpacking python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.0.0_all.deb ... Unpacking media-types (10.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.70+nmu1_all.deb ... Unpacking mailcap (3.70+nmu1) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.2-1.3_i386.deb ... Unpacking libreadline8:i386 (8.2-1.3) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.2-6_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.2-6) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.2-6_i386.deb ... Unpacking python3.11 (3.11.2-6) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.2-1+b1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3-minimal (3.11.2-1+b1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20392 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.2-1+b1_i386.deb ... Unpacking python3 (3.11.2-1+b1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.44-3_i386.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../004-libmagic1_1%3a5.44-3_i386.deb ... Unpacking libmagic1:i386 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.44-3_i386.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-12_i386.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../007-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.22.4-10_i386.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.38.1-5+b1_i386.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../010-libpipeline1_1.5.7-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.11.2-2_i386.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-3_i386.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package bedtools. Preparing to unpack .../017-bedtools_2.30.0+dfsg-3_i386.deb ... Unpacking bedtools (2.30.0+dfsg-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../022-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../025-libelf1_0.188-2.1_i386.deb ... Unpacking libelf1:i386 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../027-libicu72_72.1-3_i386.deb ... Unpacking libicu72:i386 (72.1-3) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../028-libxml2_2.9.14+dfsg-1.2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.21-12_i386.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.11.4_all.deb ... Unpacking debhelper (13.11.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../033-python3-lib2to3_3.11.2-3_all.deb ... Unpacking python3-lib2to3 (3.11.2-3) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../034-python3-distutils_3.11.2-3_all.deb ... Unpacking python3-distutils (3.11.2-3) ... Selecting previously unselected package dh-python. Preparing to unpack .../035-dh-python_5.20230130_all.deb ... Unpacking dh-python (5.20230130) ... Selecting previously unselected package libfontenc1:i386. Preparing to unpack .../036-libfontenc1_1%3a1.1.4-1_i386.deb ... Unpacking libfontenc1:i386 (1:1.1.4-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../037-libbrotli1_1.0.9-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b6) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../038-libpng16-16_1.6.39-2_i386.deb ... Unpacking libpng16-16:i386 (1.6.39-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../039-libfreetype6_2.12.1+dfsg-5_i386.deb ... Unpacking libfreetype6:i386 (2.12.1+dfsg-5) ... Selecting previously unselected package x11-common. Preparing to unpack .../040-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../041-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../042-xfonts-utils_1%3a7.7+6_i386.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../043-fonts-urw-base35_20200910-7_all.deb ... Unpacking fonts-urw-base35 (20200910-7) ... Selecting previously unselected package help2man. Preparing to unpack .../044-help2man_1.49.3_i386.deb ... Unpacking help2man (1.49.3) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../045-libblas3_3.11.0-2_i386.deb ... Unpacking libblas3:i386 (3.11.0-2) ... 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Setting up libblas3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.8-2.1) ... Setting up libimagequant0:i386 (2.17.0-1) ... Setting up libpng16-16:i386 (1.6.39-2) ... Setting up autopoint (0.21-12) ... Setting up libsasl2-2:i386 (2.1.28+dfsg-10) ... Setting up libgfortran5:i386 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.2.4-0.1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:i386 (4.5.0-5) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libopenjp2-7:i386 (2.5.0-1+b1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:i386 (1.10.0-3+b1) ... Setting up sgml-base (1.31) ... Setting up libwebpmux3:i386 (1.2.4-0.1) ... Setting up libbsd0:i386 (0.11.7-2) ... Setting up mailcap (3.70+nmu1) ... Setting up libelf1:i386 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.2) ... Setting up bedtools (2.30.0+dfsg-3) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.11.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.7-5) ... Setting up libwebpdemux2:i386 (1.2.4-0.1) ... Setting up libreadline8:i386 (8.2-1.3) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:i386 (2.12.1+dfsg-5) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up xml-core (0.18+nmu1) ... Setting up libharfbuzz0b:i386 (6.0.0+dfsg-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.2-6) ... Setting up libcurl3-gnutls:i386 (7.88.1-9) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:i386 (0.7.0-4.1) ... Setting up libpython3-stdlib:i386 (3.11.2-1+b1) ... Setting up python3.11 (3.11.2-6) ... Setting up libhts3:i386 (1.16+ds-3) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-six (1.16.0-4) ... Setting up python3-simplejson (3.18.3-1) ... Setting up python3-pil:i386 (9.4.0-1.1+b1) ... Setting up python3-packaging (23.0-1) ... Setting up python3-reportlab-accel:i386 (3.6.12-1+b1) ... Setting up python3-pluggy (1.0.0+repack-1) ... Setting up python3-reportlab (3.6.12-1) ... Setting up python3-argcomplete (2.0.0-1) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130) ... Setting up python3-more-itertools (8.10.0-2) ... Setting up python3-pyfaidx (0.7.1-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-attr (22.2.0-1) ... Setting up python3-argh (0.26.2-2) ... Setting up python3-pysam (0.20.0+ds-3+b1) ... Setting up python3-renderpm:i386 (3.6.12-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-pytest (7.2.1-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-pybedtools (0.9.0-4+b1) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.80+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-gffutils-0.11.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-gffutils_0.11.1-3_source.changes dpkg-buildpackage: info: source package python-gffutils dpkg-buildpackage: info: source version 0.11.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing ' 0.11.1' to '0.11.1' warnings.warn(tmpl.format(**locals())) running clean removing '/build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing ' 0.11.1' to '0.11.1' warnings.warn(tmpl.format(**locals())) running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/python-gffutils-0.11.1' dh_auto_build I: pybuild base:240: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing ' 0.11.1' to '0.11.1' warnings.warn(tmpl.format(**locals())) running build running build_py creating /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/exceptions.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/gffwriter.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/helpers.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/create.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/pybedtools_integration.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/attributes.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/iterators.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/convert.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/interface.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/bins.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/version.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/merge_criteria.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/__init__.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/biopython_integration.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/inspect.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/constants.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/parser.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils copying gffutils/feature.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils creating /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts copying gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts creating /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/conftest.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/helpers_test.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_issues.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/synth_test_base.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/expected.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_iterators.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/feature_test.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/attr_test_cases.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/performance_evaluation.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/parser_test.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/__init__.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test copying gffutils/test/test_merge_all.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test creating /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/a.py -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue_197.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gms2_example.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue174.gtf -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/nonascii -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue167.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/issue181.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/sharr.gtf -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data running build_scripts creating build creating build/scripts-3.11 copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.11 changing mode of build/scripts-3.11/gffutils-cli from 644 to 755 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --name="Command line interface for python-gffutils." \ gffutils-cli > debian/gffutils-cli.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \ 'gffutils-cli fetch' > debian/gffutils-cli-fetch.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \ 'gffutils-cli children' > debian/gffutils-cli-children.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \ 'gffutils-cli parents' > debian/gffutils-cli-parents.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \ 'gffutils-cli region' > debian/gffutils-cli-region.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \ 'gffutils-cli create' > debian/gffutils-cli-create.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \ 'gffutils-cli common' > debian/gffutils-cli-common.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \ 'gffutils-cli clean' > debian/gffutils-cli-clean.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \ 'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1 PYTHONPATH=/build/python-gffutils-0.11.1 PATH=/build/python-gffutils-0.11.1/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \ help2man --version-string=0.11.1 --no-info \ --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \ 'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1 make[1]: Leaving directory '/build/python-gffutils-0.11.1' dh_auto_test -O--buildsystem=pybuild I: pybuild base:240: cd /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build; python3.11 -m pytest --doctest-modules -m 'not slow' ============================= test session starts ============================== platform linux -- Python 3.11.2, pytest-7.2.1, pluggy-1.0.0+repack rootdir: /build/python-gffutils-0.11.1 collected 66 items gffutils/attributes.py . [ 1%] gffutils/pybedtools_integration.py . [ 3%] gffutils/test/feature_test.py ........... [ 19%] gffutils/test/helpers_test.py .. [ 22%] gffutils/test/parser_test.py .x....... [ 36%] gffutils/test/test_biopython_integration.py . [ 37%] gffutils/test/test_issues.py ...................... [ 71%] gffutils/test/test_iterators.py .... [ 77%] gffutils/test/test_merge.py ......... [ 90%] gffutils/test/test_merge_all.py ...... [100%] =============================== warnings summary =============================== gffutils/interface.py:105 /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/interface.py:105: DeprecationWarning: OptimizedUnicode is deprecated and will be removed in Python 3.12. Since Python 3.3 it has simply been an alias for 'str'. text_factory=sqlite3.OptimizedUnicode, .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py:46 .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py:46: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_split_attrs will be ignored gffutils/test/performance_evaluation.py:190 /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow gffutils/test/performance_evaluation.py:208 /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.slow .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string /usr/lib/python3/dist-packages/_pytest/python.py:199: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py::test_pr_172 /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_biopython_integration.py::test_roundtrip /usr/lib/python3/dist-packages/Bio/SeqFeature.py:257: BiopythonDeprecationWarning: Using the strand argument is deprecated, and will be removed in a future release. Please set it via the location object instead. warnings.warn( .pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_biopython_integration.py::test_roundtrip /usr/lib/python3/dist-packages/Bio/SeqFeature.py:1940: BiopythonDeprecationWarning: Alias location.position is deprecated and will be removed in a future release. Use location directly, or int(location). However, that will fail for UnknownPosition, and for OneOfPosition and WithinPosition will give the default rather than left-most value. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 65 passed, 1 xfailed, 9 warnings in 2.20s =================== I: pybuild pybuild:333: find . -name tmp.db -delete create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-gffutils/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/python-gffutils-0.11.1/debian/python3-gffutils /usr/lib/python3/dist-packages/setuptools/dist.py:534: UserWarning: Normalizing ' 0.11.1' to '0.11.1' warnings.warn(tmpl.format(**locals())) running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_scripts running install_lib creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11 creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/exceptions.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/conftest.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/helpers_test.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_issues.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/synth_test_base.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/expected.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/random-chr.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue_197.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue174.gtf -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/nonascii -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/a.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue167.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/issue181.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/sharr.gtf -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_iterators.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/feature_test.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/attr_test_cases.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/conftest.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/__init__.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/expected.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-311-pytest-7.2.1.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/performance_evaluation.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/parser_test.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/__init__.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/test/test_merge_all.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/gffwriter.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/helpers.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/create.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/pybedtools_integration.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/convert.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/version.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/inspect.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/gffwriter.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/interface.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/create.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/helpers.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/feature.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/iterators.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/bins.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/__init__.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/constants.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/attributes.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/parser.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__pycache__/exceptions.cpython-311.pyc -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__pycache__ copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/attributes.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/iterators.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/convert.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/interface.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/bins.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/version.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/merge_criteria.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/__init__.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/biopython_integration.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/inspect.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/constants.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/parser.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils copying /build/python-gffutils-0.11.1/.pybuild/cpython3_3.11_gffutils/build/gffutils/feature.py -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/exceptions.py to exceptions.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/conftest.py to conftest.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/expected.py to expected.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/data/a.py to a.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test.py to test.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/helpers.py to helpers.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/create.py to create.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/attributes.py to attributes.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/iterators.py to iterators.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/convert.py to convert.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/interface.py to interface.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/bins.py to bins.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/version.py to version.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/__init__.py to __init__.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/inspect.py to inspect.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/constants.py to constants.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/parser.py to parser.cpython-311.pyc byte-compiling /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils/feature.py to feature.cpython-311.pyc running install_egg_info running egg_info writing gffutils.egg-info/PKG-INFO writing dependency_links to gffutils.egg-info/dependency_links.txt writing requirements to gffutils.egg-info/requires.txt writing top-level names to gffutils.egg-info/top_level.txt reading manifest file 'gffutils.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.rst' under directory 'docs/source' warning: no files found matching '*.py' under directory 'docs/source' warning: no files found matching '*' under directory 'docs/source/images' warning: no files found matching 'docs/Makefile' warning: no files found matching 'docs/make.bat' warning: no files found matching 'gffutils/test/data/__init__.py' warning: no files found matching 'gffutils/test/data/t.py' adding license file 'LICENSE' writing manifest file 'gffutils.egg-info/SOURCES.txt' Copying gffutils.egg-info to /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/lib/python3.11/dist-packages/gffutils-0.11.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/bin copying build/scripts-3.11/gffutils-cli -> /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/bin changing mode of /build/python-gffutils-0.11.1/debian/python3-gffutils/usr/bin/gffutils-cli to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-gffutils-0.11.1' dh_install find debian -name "*.bak" -delete make[1]: Leaving directory '/build/python-gffutils-0.11.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-gffutils' in '../python3-gffutils_0.11.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-gffutils_0.11.1-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-gffutils_0.11.1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4192 and its subdirectories I: Current time: Thu May 11 05:00:11 -12 2023 I: pbuilder-time-stamp: 1683824411 Thu May 11 17:00:12 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Thu May 11 17:00:12 UTC 2023 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Thu May 11 17:02:43 UTC 2023 I: Deleting $TMPDIR on ionos16-i386.debian.net. Thu May 11 17:02:43 UTC 2023 I: python-gffutils_0.11.1-3_i386.changes: Format: 1.8 Date: Sat, 07 Jan 2023 15:10:03 +0100 Source: python-gffutils Binary: python3-gffutils Architecture: all Version: 0.11.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-gffutils - Work with GFF and GTF files in a flexible database framework Changes: python-gffutils (0.11.1-3) unstable; urgency=medium . * d/control: restore support for all python3 versions. * d/control: declare compliance to standards version 4.6.2. * d/control: add myself to uploaders. Checksums-Sha1: badf516924f6f0b5d8c13749949d31dbf9dba144 7637 python-gffutils_0.11.1-3_i386.buildinfo 79464dcf719f26f3c62085cb7876e8679741a663 1035192 python3-gffutils_0.11.1-3_all.deb Checksums-Sha256: d10d097893f2734ff54dd2c3045c4d42316e71dade3f296849f01e34f7e16c4c 7637 python-gffutils_0.11.1-3_i386.buildinfo 9f6a49c09e45f8510ab58c1169a1908a7c9620640978c0d6db66672e835ce52f 1035192 python3-gffutils_0.11.1-3_all.deb Files: 3d7b1f57392182db0ed4deeda4478fbe 7637 science optional python-gffutils_0.11.1-3_i386.buildinfo 0a28375fe104a492d6b168eb3441ed43 1035192 science optional python3-gffutils_0.11.1-3_all.deb Thu May 11 17:02:44 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/python-gffutils_0.11.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/python-gffutils_0.11.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/python-gffutils_0.11.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/b1/python-gffutils_0.11.1-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.HUFIdGeQ/b2/python-gffutils_0.11.1-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.314s) 0.314s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu May 11 17:02:51 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Thu May 11 17:02:51 UTC 2023 I: python-gffutils from bookworm built successfully and reproducibly on i386. Thu May 11 17:02:53 UTC 2023 I: Submitting .buildinfo files to external archives: Thu May 11 17:02:53 UTC 2023 I: Submitting 12K b1/python-gffutils_0.11.1-3_i386.buildinfo.asc Thu May 11 17:02:54 UTC 2023 I: Submitting 12K b2/python-gffutils_0.11.1-3_i386.buildinfo.asc Thu May 11 17:02:55 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu May 11 17:02:55 UTC 2023 I: Done submitting .buildinfo files. Thu May 11 17:02:55 UTC 2023 I: Removing signed python-gffutils_0.11.1-3_i386.buildinfo.asc files: removed './b1/python-gffutils_0.11.1-3_i386.buildinfo.asc' removed './b2/python-gffutils_0.11.1-3_i386.buildinfo.asc'