Fri Jan 6 00:07:32 UTC 2023 I: starting to build atropos/bullseye/amd64 on jenkins on '2023-01-06 00:07' Fri Jan 6 00:07:32 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/7362/console.log Fri Jan 6 00:07:32 UTC 2023 I: Downloading source for bullseye/atropos=1.1.29+dfsg-1 --2023-01-06 00:07:32-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/atropos/atropos_1.1.29%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2107 (2.1K) [text/prs.lines.tag] Saving to: ‘atropos_1.1.29+dfsg-1.dsc’ 0K .. 100% 14.5M=0s 2023-01-06 00:07:32 (14.5 MB/s) - ‘atropos_1.1.29+dfsg-1.dsc’ saved [2107/2107] Fri Jan 6 00:07:32 UTC 2023 I: atropos_1.1.29+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: atropos Binary: atropos Architecture: any Version: 1.1.29+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jdidion/atropos Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/atropos Vcs-Git: https://salsa.debian.org/med-team/atropos.git Build-Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pytest , python3-jinja2 , python3-pysam Package-List: atropos deb science optional arch=any Checksums-Sha1: 0c0b0fa413157e08a8ca1ce9718a03276b91f2f9 3117356 atropos_1.1.29+dfsg.orig.tar.xz 189d24d376b59517270ca7e935582a84d413f825 5172 atropos_1.1.29+dfsg-1.debian.tar.xz Checksums-Sha256: 68f76f0c83809bf51bb4b8a08dd0e87fcb7fa04b572260498b479e410db9645e 3117356 atropos_1.1.29+dfsg.orig.tar.xz 95cb277936317f77269621ffca3b1f1a88b0e489863d14ad314e7e33eea67ce1 5172 atropos_1.1.29+dfsg-1.debian.tar.xz Files: 328dc56ee5f47012a69a0b85276ae22c 3117356 atropos_1.1.29+dfsg.orig.tar.xz 788ee2b5f5c7fd9aac9ea24b8b17d320 5172 atropos_1.1.29+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl/RSvwTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0eMLD/91slZq/kBQaGOJPebwbji7i8kQsvCN rdopL72OH7ymW6ou+0bICD0J4cybZUR2oIRzrLPyDCTUUc2kY+XA1CA8o5gUwH6W +DR1QGCx0Qa5RQ3SYGNNK5A/YMBeS23W9xic8LRM+Gl1VMVLYKHrVwYLcI4Ei+DM 6tgIy5T7XLgM/LLQu2GOBpVMcYod7IHIeKuV5A1EBieCBjBxl6fWuT/f8YzWVTWO rxjaQbCB/N7m8VcwMtiD2JbEPPLmCrEvIYsqY2fkABp6I+bpP8KRAi2aQHxI94Ak 6HzBz5t25lE+fysuTCTE1AC6y87QyOwjqlZRbgxnderxcsM9FZPCjRanij/SXqul qSzwCT9Lk2zB/R8OhyZ2Z1DSP2LaarjJYrLloHYBdheg7yvo2mSJOxdoo//jL08r /oHEhEeBYsBHiZmOoW2hzBQiIcnBBDpFIjHM+RSQVfpAbO2UHAN163wT5r43fjA5 t7vFFG2aHuHH6xj/n9euhKYJrqq+SjC7g9JcMAY+O8OrooWqusw9iy2/5P+XbF6u R+9uvB9fKkSnWS0xu6ywLiivYrctvl+MwYZwps/45KVHVHWoErXpQO46roFSKUHc LzClerEACxG9Zevzj0KUk17Syb/gBZ7cUfvXTDgesS1WH6gsVALilQfMoTbZbX71 k+ppLnHN/Rxpeg== =NgAr -----END PGP SIGNATURE----- Fri Jan 6 00:07:32 UTC 2023 I: Checking whether the package is not for us Fri Jan 6 00:07:32 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Jan 6 00:07:32 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Jan 6 00:10:23 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 5 12:07:34 -12 2023 I: pbuilder-time-stamp: 1672963654 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [atropos_1.1.29+dfsg-1.dsc] I: copying [./atropos_1.1.29+dfsg.orig.tar.xz] I: copying [./atropos_1.1.29+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.P1TlHUkz/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 9 10:09:00 2020 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./atropos_1.1.29+dfsg-1.dsc dpkg-source: info: extracting atropos in atropos-1.1.29+dfsg dpkg-source: info: unpacking atropos_1.1.29+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.29+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/770834/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a1f18f52f7734b7d94fde04f7b8b54c2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='770834' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/pbuilderrc_Eh8w --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/b1 --logfile b1/build.log atropos_1.1.29+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 20 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/770834/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, cython3, python3-dev, python3-setuptools, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19704 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libhts3{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 37.2 MB of archives. After unpacking 141 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2+deb11u5 [98.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 cython3 amd64 0.29.21-3+b1 [1312 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u3 [693 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 python3-distutils all 3.9.2-1 [143 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1+deb11u1 [69.1 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1+deb11u1 [106 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3+deb11u1 [232 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libcurl3-gnutls amd64 7.74.0-1.3+deb11u3 [342 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 libdeflate0 amd64 1.7-1 [53.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libexpat1-dev amd64 2.2.10-2+deb11u5 [141 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libhts3 amd64 1.11-4 [378 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 libpython3.9 amd64 3.9.2-1 [1691 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-dev amd64 3.9.2-1 [4028 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 libpython3-dev amd64 3.9.2-3 [21.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 python3-attr all 20.3.0-1 [52.9 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2+deb11u2 [191 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 python3.9-dev amd64 3.9.2-1 [515 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 python3-dev amd64 3.9.2-3 [24.8 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 python3-six all 1.16.0-2 [17.5 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 python3-zipp all 1.0.0-3 [6060 B] Get: 73 http://deb.debian.org/debian bullseye/main amd64 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 python3-iniconfig all 1.1.1-1 [6308 B] Get: 75 http://deb.debian.org/debian bullseye/main amd64 python3-markupsafe amd64 1.1.1-1+b3 [15.2 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 python3-packaging all 20.9-2 [33.5 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 80 http://deb.debian.org/debian bullseye/main amd64 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 python3-py all 1.10.0-1 [94.2 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 python3-pysam amd64 0.15.4+ds-3+b2 [1536 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 python3-toml all 0.10.1-1 [15.9 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 python3-pytest all 6.0.2-2 [211 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 37.2 MB in 16s (2257 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19704 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20992 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... 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Unpacking python3-pytest (6.0.2-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../68-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up bsdextrautils (2.36.1-8+deb11u1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libdeflate0:amd64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libexpat1-dev:amd64 (2.2.10-2+deb11u5) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1+deb11u1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7+deb11u3) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:amd64 (7.74.0-1.3+deb11u3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:amd64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:amd64 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:amd64 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-six (1.16.0-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up libpython3-dev:amd64 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/atropos-1.1.29+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.29+dfsg-1_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.29+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/atropos-1.1.29+dfsg' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/atropos-1.1.29+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/utils.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_xopen.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_trim.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_seqio.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_qualtrim.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_paired.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_multicore.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_modifiers.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_filters.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_commands.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_colorspace.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_atropos.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_align.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/test_adapters.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests copying tests/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos copying atropos/_version.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos copying atropos/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util copying atropos/util/colorspace.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util copying atropos/util/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/seqio.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/progress.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/compression.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io copying atropos/io/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/stats.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/reports.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/multicore.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/cli.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/base.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands copying atropos/commands/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align copying atropos/align/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error creating /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect copying atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters UPDATING /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py set /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py to '1.1.29' running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.29+dfsg/atropos/align/_align.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.29+dfsg/atropos/commands/trim/_qualtrim.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/atropos-1.1.29+dfsg/atropos/io/_seqio.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/atropos creating build/temp.linux-x86_64-3.9/atropos/align x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/align/_align.c -o build/temp.linux-x86_64-3.9/atropos/align/_align.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/align/_align.o -o /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align/_align.cpython-39-x86_64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-x86_64-3.9/atropos/commands creating build/temp.linux-x86_64-3.9/atropos/commands/trim x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-x86_64-3.9/atropos/commands/trim/_qualtrim.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/commands/trim/_qualtrim.o -o /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/_qualtrim.cpython-39-x86_64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-x86_64-3.9/atropos/io x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-RNBry6/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c atropos/io/_seqio.c -o build/temp.linux-x86_64-3.9/atropos/io/_seqio.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/atropos-1.1.29+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.9/atropos/io/_seqio.o -o /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/_seqio.cpython-39-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/atropos -> build/scripts-3.9 changing mode of build/scripts-3.9/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/atropos-1.1.29+dfsg' \ dh_auto_test -- --before-test="ln -s /build/atropos-1.1.29+dfsg/tests/cut {build_dir}/tests && ln -s /build/atropos-1.1.29+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:284: ln -s /build/atropos-1.1.29+dfsg/tests/cut /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests && ln -s /build/atropos-1.1.29+dfsg/tests/data /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests I: pybuild base:232: cd /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build; python3.9 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/atropos-1.1.29+dfsg, configfile: pytest.ini collected 224 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 45%] tests/test_colorspace.py ................. [ 53%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 54%] tests/test_modifiers.py .................... [ 63%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py .................................. [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== atropos/util/__init__.py:3 atropos/util/__init__.py:3 /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util/__init__.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3, and in 3.10 it will stop working from collections import OrderedDict, Iterable, Sequence tests/test_paired.py:611 /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_paired.py:611: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html @pytest.mark.timeout(10) -- Docs: https://docs.pytest.org/en/stable/warnings.html ================= 223 passed, 1 skipped, 3 warnings in 41.39s ================== make[1]: Leaving directory '/build/atropos-1.1.29+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/atropos-1.1.29+dfsg/debian/atropos running install running build running build_py UPDATING /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py set /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py to '1.1.29' running build_ext running build_scripts running install_lib creating /build/atropos-1.1.29+dfsg/debian/atropos/usr creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9 creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/.adapters -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/_version.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/__pycache__/_version.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/__pycache__ creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters/sequencing_adapters.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/adapters/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align/_align.cpython-39-x86_64-linux-gnu.so -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/align/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/reports.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/legacy_report.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/cli.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/multicore.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/stats.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/base.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__pycache__ creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/__pycache__/cli.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/cli.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/detect/reports.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/__pycache__/cli.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/cli.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/error/reports.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/__pycache__/cli.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/cli.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/qc/reports.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/reports.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/cli.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/multicore.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/writers.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/filters.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/qualtrim.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/modifiers.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/_qualtrim.cpython-39-x86_64-linux-gnu.so -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/cli.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/filters.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/modifiers.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/multicore.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/qualtrim.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/reports.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/trim/writers.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/base.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/cli.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/legacy_report.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/multicore.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/reports.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/commands/stats.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/__pycache__/seqio.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/__pycache__/compression.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/_seqio.cpython-39-x86_64-linux-gnu.so -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/compression.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/progress.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/io/seqio.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util/__pycache__/colorspace.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/util/colorspace.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/atropos/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/truncated.gz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp2-out.2.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp1-out.1.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp2-out.2.0.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp1-out.1.0.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp2-out.2.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/testtmp/tmp1-out.1.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/testtmp creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_xopen.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_trim.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_seqio.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_qualtrim.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_paired.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_multicore.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_modifiers.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_filters.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_commands.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_colorspace.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_atropos.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/utils.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_align.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/test_adapters.cpython-39-pytest-6.0.2.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__pycache__/__init__.cpython-39.pyc -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__pycache__ creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/withplus.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/wildcard_adapter.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/wildcardN.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/wildcard.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/twoadapters.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/trimN5.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/trimN3.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/tooshort.noprimer.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/tooshort.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/toolong.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/suffix-adapter.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/sra.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid5p.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid5p.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid.qual -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/solid.csfasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/small.myownextension -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/small.fastq.xz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/small.fastq.gz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/small.fastq.bz2 -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/small.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/simple.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/simple.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/s_1_sequence.txt.gz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/restfront.txt -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/rest.txt -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/rest.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/prefix-adapter.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/polya.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/plus.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired_bis_insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired_bis_insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired_bis_adapter.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired_bis_adapter.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/paired.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/overlapb.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/overlapa.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/no_indels.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/nextseq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/multiblock.fastq.gz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/maxn.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/lowqual.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/lowq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/linked.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/lengths.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/issue68.2.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/issue68.1.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/issue46.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/interleaved.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/illumina64.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/illumina5.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/illumina.fastq.gz -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/highq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/example.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/empty.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/dos.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/big.2.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/big.1.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/bad_bases.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/back_repeat.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/back_repeat.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/anywhere_repeat.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/anchored_no_indels.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/anchored.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/anchored-back.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/adapter.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/E3M.qual -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/E3M.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/data/454.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/data creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/wildcard_adapter.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/wildcardN.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/wildcard.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/unconditional-front.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/unconditional-both.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/unconditional-back.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/twoadapters.unknown.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/twoadapters.second.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/twoadapters.first.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/twoadapters.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/trimN5.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/trimN3.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/suffix.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/stripped.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/sra.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solidqual.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solidmaq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solidbfast.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p-anchored.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid5p-anchored.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/solid-no-zerocap.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small_mincut3.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small_mincut2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small_mincut1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small.untrimmed.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small.trimmed.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/small.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/s_1_sequence.txt -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/restfront.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/rest.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/polya.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/plus.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/pairedu.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/pairedu.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/pairedq.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/pairedq.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis2_insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis2_insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis1_insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis1_insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_adapter.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired_adapter.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired.m14.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired.m14.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-untrimmed.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-untrimmed.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-trimmed.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-trimmed.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-too-short.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-too-short.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-separate.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-separate.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-onlyA.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-onlyA.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-m27.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-m27.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/paired-filterboth.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/overlapb.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/overlapa.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/no_indels.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/no-trim.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/nextseq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/minlen.noprimer.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/minlen.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxn2.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxn1.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxn0.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxn0.4.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxn0.2.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/maxlen.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/lowqual.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/lowq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/lowercase.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/linked.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/issue68.2.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/issue68.1.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/issue46.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/interleaved.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/insert.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/insert.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/illumina64.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/illumina5.info.txt -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/illumina5.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/illumina.info.txt -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/illumina.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/highq.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/examplefront.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/example.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/empty.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/dos.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/discard.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/discard-untrimmed.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/back_repeat.2.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/back_repeat.1.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/anywhere_repeat.fastq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/anchored_no_indels.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/anchored.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/anchored-back.fasta -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/SRR2040662_trimmed.fq -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/cut/454.fa -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/cut copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/__init__.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_adapters.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_align.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_atropos.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_colorspace.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_commands.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_filters.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_modifiers.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_multicore.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_paired.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_qualtrim.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_seqio.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_trim.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/test_xopen.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests copying /build/atropos-1.1.29+dfsg/.pybuild/cpython3_3.9/build/tests/utils.py -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/_version.py to _version.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/adapters/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/detect/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/error/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/qc/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/filters.py to filters.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/trim/writers.py to writers.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/base.py to base.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/cli.py to cli.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/multicore.py to multicore.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/reports.py to reports.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/commands/stats.py to stats.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/compression.py to compression.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/progress.py to progress.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/io/seqio.py to seqio.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/util/colorspace.py to colorspace.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_adapters.py to test_adapters.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_align.py to test_align.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_atropos.py to test_atropos.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_commands.py to test_commands.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_filters.py to test_filters.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_multicore.py to test_multicore.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_paired.py to test_paired.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_seqio.py to test_seqio.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_trim.py to test_trim.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/test_xopen.py to test_xopen.cpython-39.pyc byte-compiling /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/tests/utils.py to utils.cpython-39.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/atropos-1.1.29+dfsg/debian/atropos/usr/lib/python3.9/dist-packages/atropos-1.1.29.egg-info Skipping SOURCES.txt running install_scripts creating /build/atropos-1.1.29+dfsg/debian/atropos/usr/bin copying build/scripts-3.9/atropos -> /build/atropos-1.1.29+dfsg/debian/atropos/usr/bin changing mode of /build/atropos-1.1.29+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/atropos-1.1.29+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/atropos-1.1.29+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package atropos: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.29+dfsg-1_amd64.deb'. dpkg-deb: building package 'atropos' in '../atropos_1.1.29+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../atropos_1.1.29+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/770834 and its subdirectories I: Current time: Thu Jan 5 12:10:23 -12 2023 I: pbuilder-time-stamp: 1672963823 Fri Jan 6 00:10:24 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Jan 6 00:10:24 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Jan 6 00:12:30 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Jan 6 00:12:30 UTC 2023 I: atropos_1.1.29+dfsg-1_amd64.changes: Format: 1.8 Date: Wed, 09 Dec 2020 22:29:55 +0100 Source: atropos Binary: atropos atropos-dbgsym Architecture: amd64 Version: 1.1.29+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: atropos - NGS read trimming tool that is specific, sensitive, and speedy Changes: atropos (1.1.29+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version. Checksums-Sha1: 5d5785fae8d70362771bbcb7e2d1fa1828a24ee8 460840 atropos-dbgsym_1.1.29+dfsg-1_amd64.deb bfaf9303a9c1e4e864ba4446be7ea9749d81fac8 7199 atropos_1.1.29+dfsg-1_amd64.buildinfo cb42bcbc5c6bac6ae1700ff467d515465a2ffdc2 198684 atropos_1.1.29+dfsg-1_amd64.deb Checksums-Sha256: 6ca1db830ec71273762bcb946ef6d7bb3e999d59b1179c19a43b5f5359791b90 460840 atropos-dbgsym_1.1.29+dfsg-1_amd64.deb 13973a9365c09b03557f789b9ca6c4c1b5446bace2783119f80f57f503c63fc9 7199 atropos_1.1.29+dfsg-1_amd64.buildinfo 68c49fbee9cad4134a43bfe0df7d3bbe6974307b0389788a0c006c86ba304b27 198684 atropos_1.1.29+dfsg-1_amd64.deb Files: f8ca84dc1a249d7d5c232de23cbb7887 460840 debug optional atropos-dbgsym_1.1.29+dfsg-1_amd64.deb be7257ae01b659676d3dcbac91bacc6d 7199 science optional atropos_1.1.29+dfsg-1_amd64.buildinfo d39292a60fbb2e81279813f794271da5 198684 science optional atropos_1.1.29+dfsg-1_amd64.deb Fri Jan 6 00:12:31 UTC 2023 I: diffoscope 228 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/atropos_1.1.29+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/atropos_1.1.29+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/atropos_1.1.29+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/b1/atropos_1.1.29+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.PlIklTKV/b2/atropos_1.1.29+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.329s) 0.329s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Jan 6 00:12:44 UTC 2023 I: diffoscope 228 found no differences in the changes files, and a .buildinfo file also exists. Fri Jan 6 00:12:44 UTC 2023 I: atropos from bullseye built successfully and reproducibly on amd64. Fri Jan 6 00:12:45 UTC 2023 I: Submitting .buildinfo files to external archives: Fri Jan 6 00:12:45 UTC 2023 I: Submitting 8.0K b1/atropos_1.1.29+dfsg-1_amd64.buildinfo.asc Fri Jan 6 00:12:46 UTC 2023 I: Submitting 8.0K b2/atropos_1.1.29+dfsg-1_amd64.buildinfo.asc Fri Jan 6 00:12:46 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 6 00:12:46 UTC 2023 I: Done submitting .buildinfo files. Fri Jan 6 00:12:46 UTC 2023 I: Removing signed atropos_1.1.29+dfsg-1_amd64.buildinfo.asc files: removed './b1/atropos_1.1.29+dfsg-1_amd64.buildinfo.asc' removed './b2/atropos_1.1.29+dfsg-1_amd64.buildinfo.asc'