Mon Jul 24 09:36:37 UTC 2023 I: starting to build biosquid/bullseye/amd64 on jenkins on '2023-07-24 09:36' Mon Jul 24 09:36:37 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/3590/console.log Mon Jul 24 09:36:37 UTC 2023 I: Downloading source for bullseye/biosquid=1.9g+cvs20050121-12 --2023-07-24 09:36:37-- http://cdn-fastly.deb.debian.org/debian/pool/main/b/biosquid/biosquid_1.9g%2bcvs20050121-12.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2195 (2.1K) [text/prs.lines.tag] Saving to: ‘biosquid_1.9g+cvs20050121-12.dsc’ 0K .. 100% 193M=0s 2023-07-24 09:36:37 (193 MB/s) - ‘biosquid_1.9g+cvs20050121-12.dsc’ saved [2195/2195] Mon Jul 24 09:36:37 UTC 2023 I: biosquid_1.9g+cvs20050121-12.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biosquid Binary: biosquid, libsquid1, libsquid-dev Architecture: any Version: 1.9g+cvs20050121-12 Maintainer: Debian-Med Packaging Team Uploaders: Andreas Tille Homepage: http://eddylab.org/software.html Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/biosquid Vcs-Git: https://salsa.debian.org/med-team/biosquid.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs Package-List: biosquid deb science optional arch=any libsquid-dev deb libdevel optional arch=any libsquid1 deb libs optional arch=any Checksums-Sha1: 5ff847263f38a26e8cf4e2fba0414c5fdb8c6732 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 5d65cbd79d4bfc3563df3b8d1d2c6a5e42edbd30 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz Checksums-Sha256: b6b752bcea5ec6468b52096cdde0e792b7f5ed5fb3f477ec7ac233c54646f925 304060 biosquid_1.9g+cvs20050121.orig.tar.gz af677b3a382366e3de17fd5bbe844015f6ec6df9b851d91c78bab27588fea3fd 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz Files: 75ca6e693bedb18086b9e5911f3c047a 304060 biosquid_1.9g+cvs20050121.orig.tar.gz 4da7cb77db8cf8609c141e3c7e02a84f 14340 biosquid_1.9g+cvs20050121-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl81LioRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbNw/+PwIdrs9uG16/UdtQkBDW9R76q6yqKV9J Fwyj7bgioT6b+cooyKEFiomC/XHmbQ/rTpRwF+j1owx+hIIc8Yc9osDOsdZcXvwy 3PozpNhQQdOmBTgR4v3gVIra5rxZe998X6V7vGUiV+2r1Zw8zQlCZMj2iBSljW2g AocegXF9Lk2Et/mKdeOguJaccjcohhPGt4pwXhBM4/d/3SY8KCDjPh0Aj4aCkFog sqSHCiaeFj7JU0tKqFM4cksQN75NAgGTmRV9Zs1B4HTASUFtc2bJtdt25fiMvFLA kmOO8OID2i5Nw46dC1PL39qIalLlS/JC7WInCyel8ouqDC5Y0xvYGX2w9StafEUm 7+Ds5Gds38yMRqLWV1jDM9v/GU/qLIomM0y+/mnvv+x2OPAKwGB39vzrHAq68+Xy cQnhGNu2F8IKmJgv/upb/6S9Lhe5zLebPluFBAx1wkGDJkbZWoEVcPwIhFBoZEq9 ZbLt0mZ9G0gOdKk2V18goq7gMWn+gA0K5DIwbbQIzkyEYGc2z1DeenbXwYG3yHGA Mq8or5NJI0GPtuldaMP9TstfC4+Y3CSpk/NQnX2nFigA7lcAiiRLCRzKmgh648yX X3pb5v2i8qrbZ9XLhZizwtcgRkU1Y+6xpxGKk4HtZ0ZGjRnhsNsNUbGgI4H43SLc D1BVoEAIW9Q= =Cxma -----END PGP SIGNATURE----- Mon Jul 24 09:36:37 UTC 2023 I: Checking whether the package is not for us Mon Jul 24 09:36:37 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Jul 24 09:36:37 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Jul 24 09:38:55 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 23 21:36:40 -12 2023 I: pbuilder-time-stamp: 1690191400 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biosquid_1.9g+cvs20050121-12.dsc] I: copying [./biosquid_1.9g+cvs20050121.orig.tar.gz] I: copying [./biosquid_1.9g+cvs20050121-12.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.b8EaHOsM/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 13 00:12:26 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biosquid_1.9g+cvs20050121-12.dsc dpkg-source: info: extracting biosquid in biosquid-1.9g+cvs20050121 dpkg-source: info: unpacking biosquid_1.9g+cvs20050121.orig.tar.gz dpkg-source: info: unpacking biosquid_1.9g+cvs20050121-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying afetch.man.patch dpkg-source: info: applying alistat.man.patch dpkg-source: info: applying compstruct.man.patch dpkg-source: info: applying Makefile.in.patch dpkg-source: info: applying seqstat.man.patch dpkg-source: info: applying sfetch.man.patch dpkg-source: info: applying shuffle.man.patch dpkg-source: info: applying sindex.man.patch dpkg-source: info: applying sreformat.man.patch dpkg-source: info: applying getopt-segmentation-fault.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying perl-testsuite-inc.patch dpkg-source: info: applying automake.patch dpkg-source: info: applying pkg-config.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4000446/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='e6554c60de2349a0b1e8d33fc1689d6b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4000446' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/pbuilderrc_BrwQ --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/b1 --logfile b1/build.log biosquid_1.9g+cvs20050121-12.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-1 (2023-07-14) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 20:23 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 20:23 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 20:23 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:25 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4000446/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.3 MB of archives. After unpacking 67.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 d-shlibs all 0.98 [17.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Fetched 18.3 MB in 0s (37.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.98_all.deb ... Unpacking d-shlibs (0.98) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/biosquid-1.9g+cvs20050121/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biosquid_1.9g+cvs20050121-12_source.changes dpkg-buildpackage: info: source package biosquid dpkg-buildpackage: info: source version 1.9g+cvs20050121-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_auto_clean install -d /build/biosquid-1.9g\+cvs20050121/debian/.debhelper/generated/_source/home rm -f configure make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/biosquid.substvars debian/libsquid1.substvars debian/libsquid-dev.substvars debian/files rm -fr -- debian/biosquid/ debian/tmp/ debian/libsquid1/ debian/libsquid-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config install -d debian/.debhelper/bucket/files cp -an --reflink=auto config.sub debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp mv debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153.tmp debian/.debhelper/bucket/files/6256efe9320ee8690c8be56bb851415d90efe4d27a67fe374efd28a6c6733153 cp -f /usr/share/misc/config.sub ./config.sub dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.ac, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. libtoolize: 'AC_PROG_RANLIB' is rendered obsolete by 'LT_INIT' configure.ac:145: warning: underquoted definition of SQ_ARITHMETIC_FPOS_T configure.ac:145: run info Automake 'Extending aclocal' configure.ac:145: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:75: installing './compile' configure.ac:77: installing './config.guess' configure.ac:40: installing './missing' Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' # autoreconf && true autoconf dh_auto_configure -- --enable-lfs # --enable-pvm install -d /build/biosquid-1.9g\+cvs20050121/debian/.debhelper/generated/_source/home ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-lfs checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar configure: configuring the SQUID library for your system. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for ranlib... ranlib checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for ar... /usr/bin/ar checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking size of off_t... 8 checking size of off64_t... 0 checking size of fpos_t... 16 configure: configured for optional LFS, large file support checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating libsquid.pc config.status: creating squidconf.h config.status: executing depfiles commands config.status: executing libtool commands # avoid duplicated definition of PACKAGE_NAME (basically conflicting with hmmer2 when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ squidconf.h make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_auto_build make -j15 make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' make all-am make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o afetch_main.o afetch_main.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-a2m.lo `test -f 'a2m.c' || echo './'`a2m.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-alignio.lo `test -f 'alignio.c' || echo './'`alignio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-clustal.lo `test -f 'clustal.c' || echo './'`clustal.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-file.lo `test -f 'file.c' || echo './'`file.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-getopt.lo `test -f 'getopt.c' || echo './'`getopt.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-gki.lo `test -f 'gki.c' || echo './'`gki.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-hsregex.lo `test -f 'hsregex.c' || echo './'`hsregex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msa.lo `test -f 'msa.c' || echo './'`msa.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-msf.lo `test -f 'msf.c' || echo './'`msf.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-phylip.lo `test -f 'phylip.c' || echo './'`phylip.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-selex.lo `test -f 'selex.c' || echo './'`selex.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqerror.lo `test -f 'sqerror.c' || echo './'`sqerror.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sqio.lo `test -f 'sqio.c' || echo './'`sqio.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-squidcore.lo `test -f 'squidcore.c' || echo './'`squidcore.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/libsquid_la-a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/libsquid_la-clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/libsquid_la-alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/libsquid_la-msa.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/libsquid_la-hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/libsquid_la-getopt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/libsquid_la-file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/libsquid_la-gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. 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--mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-cluster.lo `test -f 'cluster.c' || echo './'`cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/libsquid_la-ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/libsquid_la-stockholm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/libsquid_la-types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/libsquid_la-vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -o libsquid_la-hsregex.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-dayhoff.lo `test -f 'dayhoff.c' || echo './'`dayhoff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat 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-fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -o libsquid_la-selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -o libsquid_la-types.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-eps.lo `test -f 'eps.c' || echo './'`eps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dirichlet.c -fPIC -DPIC -o .libs/libsquid_la-dirichlet.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -o libsquid_la-dayhoff.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -o libsquid_la-vectorops.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -o libsquid_la-aligneval.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/libsquid_la-eps.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -o libsquid_la-cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -o libsquid_la-stockholm.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-iupac.lo `test -f 'iupac.c' || echo './'`iupac.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-revcomp.lo `test -f 'revcomp.c' || echo './'`revcomp.c In file included from /usr/include/string.h:495, from dirichlet.c:14: In function 'strcpy', inlined from 'AllocDirichlet' at dirichlet.c:375:3: /usr/include/x86_64-linux-gnu/bits/string_fortified.h:90:10: warning: '__builtin_strcpy' writing one too many bytes into a region of a size that depends on 'strlen' [-Wstringop-overflow=] 90 | return __builtin___strcpy_chk (__dest, __src, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ dirichlet.c: In function 'AllocDirichlet': dirichlet.c:374:17: note: at offset 0 to an object allocated by 'malloc' here 374 | d->alphabet = malloc(sizeof(char) * d->K); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-rk.lo `test -f 'rk.c' || echo './'`rk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. 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'./'`shuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -o libsquid_la-iupac.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_math.lo `test -f 'sre_math.c' || echo './'`sre_math.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-sre_stack.lo `test -f 'sre_stack.c' || echo './'`sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -o libsquid_la-sqio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/libsquid_la-seqencode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -o libsquid_la-revcomp.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-stopwatch.lo `test -f 'stopwatch.c' || echo './'`stopwatch.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-translate.lo `test -f 'translate.c' || echo './'`translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/libsquid_la-shuffle.o /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-weight.lo `test -f 'weight.c' || echo './'`weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/libsquid_la-sre_math.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -o libsquid_la-rk.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsquid_la-wuss.lo `test -f 'wuss.c' || echo './'`wuss.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -fPIC -DPIC -o .libs/libsquid_la-sre_stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -o libsquid_la-seqencode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/libsquid_la-stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/libsquid_la-translate.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alistat_main.o alistat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/libsquid_la-weight.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.o aligneval.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -fPIC -DPIC -o .libs/libsquid_la-wuss.o gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.o cluster.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.o sre_math.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_stack.o sre_stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_stack.c -o libsquid_la-sre_stack.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -o libsquid_la-translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -o libsquid_la-stopwatch.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -o libsquid_la-sre_math.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compalign_main.o compalign_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c wuss.c -o libsquid_la-wuss.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o compstruct_main.o compstruct_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o wuss.o wuss.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp_main.o revcomp_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp.o revcomp.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle.o shuffle.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqsplit_main.o seqsplit_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -o libsquid_la-shuffle.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seqstat_main.o seqstat_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sfetch_main.o sfetch_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle_main.o shuffle_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o iupac.o iupac.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sindex_main.o sindex_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sreformat_main.o sreformat_main.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -o libsquid_la-weight.o >/dev/null 2>&1 gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eps.o eps.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate_main.o translate_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.o translate.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight_main.o weight_main.c gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.o weight.c /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:0 -Wl,-z,relro -Wl,-z,now -o libsquid.la -rpath /usr/lib/x86_64-linux-gnu libsquid_la-a2m.lo libsquid_la-alignio.lo libsquid_la-clustal.lo libsquid_la-file.lo libsquid_la-getopt.lo libsquid_la-gki.lo libsquid_la-hsregex.lo libsquid_la-msa.lo libsquid_la-msf.lo libsquid_la-phylip.lo libsquid_la-selex.lo libsquid_la-sqerror.lo libsquid_la-sqio.lo libsquid_la-squidcore.lo libsquid_la-sre_ctype.lo libsquid_la-sre_random.lo libsquid_la-sre_string.lo libsquid_la-ssi.lo libsquid_la-stockholm.lo libsquid_la-types.lo libsquid_la-vectorops.lo libsquid_la-aligneval.lo libsquid_la-cluster.lo libsquid_la-dayhoff.lo libsquid_la-dirichlet.lo libsquid_la-eps.lo libsquid_la-iupac.lo libsquid_la-revcomp.lo libsquid_la-rk.lo libsquid_la-seqencode.lo libsquid_la-shuffle.lo libsquid_la-sre_math.lo libsquid_la-sre_stack.lo libsquid_la-stopwatch.lo libsquid_la-translate.lo libsquid_la-weight.lo libsquid_la-wuss.lo libtool: link: gcc -shared -fPIC -DPIC .libs/libsquid_la-a2m.o .libs/libsquid_la-alignio.o .libs/libsquid_la-clustal.o .libs/libsquid_la-file.o .libs/libsquid_la-getopt.o .libs/libsquid_la-gki.o .libs/libsquid_la-hsregex.o .libs/libsquid_la-msa.o .libs/libsquid_la-msf.o .libs/libsquid_la-phylip.o .libs/libsquid_la-selex.o .libs/libsquid_la-sqerror.o .libs/libsquid_la-sqio.o .libs/libsquid_la-squidcore.o .libs/libsquid_la-sre_ctype.o .libs/libsquid_la-sre_random.o .libs/libsquid_la-sre_string.o .libs/libsquid_la-ssi.o .libs/libsquid_la-stockholm.o .libs/libsquid_la-types.o .libs/libsquid_la-vectorops.o .libs/libsquid_la-aligneval.o .libs/libsquid_la-cluster.o .libs/libsquid_la-dayhoff.o .libs/libsquid_la-dirichlet.o .libs/libsquid_la-eps.o .libs/libsquid_la-iupac.o .libs/libsquid_la-revcomp.o .libs/libsquid_la-rk.o .libs/libsquid_la-seqencode.o .libs/libsquid_la-shuffle.o .libs/libsquid_la-sre_math.o .libs/libsquid_la-sre_stack.o .libs/libsquid_la-stopwatch.o .libs/libsquid_la-translate.o .libs/libsquid_la-weight.o .libs/libsquid_la-wuss.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsquid.so.1 -o .libs/libsquid.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libsquid.so.1" && ln -s "libsquid.so.1.0.0" "libsquid.so.1") libtool: link: (cd ".libs" && rm -f "libsquid.so" && ln -s "libsquid.so.1.0.0" "libsquid.so") libtool: link: /usr/bin/ar cr .libs/libsquid.a libsquid_la-a2m.o libsquid_la-alignio.o libsquid_la-clustal.o libsquid_la-file.o libsquid_la-getopt.o libsquid_la-gki.o libsquid_la-hsregex.o libsquid_la-msa.o libsquid_la-msf.o libsquid_la-phylip.o libsquid_la-selex.o libsquid_la-sqerror.o libsquid_la-sqio.o libsquid_la-squidcore.o libsquid_la-sre_ctype.o libsquid_la-sre_random.o libsquid_la-sre_string.o libsquid_la-ssi.o libsquid_la-stockholm.o libsquid_la-types.o libsquid_la-vectorops.o libsquid_la-aligneval.o libsquid_la-cluster.o libsquid_la-dayhoff.o libsquid_la-dirichlet.o libsquid_la-eps.o libsquid_la-iupac.o libsquid_la-revcomp.o libsquid_la-rk.o libsquid_la-seqencode.o libsquid_la-shuffle.o libsquid_la-sre_math.o libsquid_la-sre_stack.o libsquid_la-stopwatch.o libsquid_la-translate.o libsquid_la-weight.o libsquid_la-wuss.o libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o afetch afetch_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compalign compalign_main.o aligneval.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o revcomp revcomp_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqsplit seqsplit_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o seqstat seqstat_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sfetch sfetch_main.o revcomp.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o shuffle shuffle_main.o iupac.o shuffle.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sindex sindex_main.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o libsquid.la -lm /bin/bash ./libtool --tag=CC --mode=link gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o libsquid.la -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/afetch afetch_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compalign compalign_main.o aligneval.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/revcomp revcomp_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/alistat alistat_main.o aligneval.o cluster.o sre_math.o sre_stack.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/compstruct compstruct_main.o sre_math.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqsplit seqsplit_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/seqstat seqstat_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sfetch sfetch_main.o revcomp.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sindex sindex_main.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/shuffle shuffle_main.o iupac.o shuffle.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/weight weight_main.o aligneval.o cluster.o iupac.o sre_math.o sre_stack.o weight.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/sreformat sreformat_main.o eps.o shuffle.o sre_stack.o wuss.o ./.libs/libsquid.so -lm libtool: link: gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/translate translate_main.o iupac.o revcomp.o shuffle.o sre_stack.o translate.o ./.libs/libsquid.so -lm make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' chmod u+x Testsuite/x-base-* Testsuite/bug-1-sfetch* ln -s .libs/libsquid.a dh_auto_test make -j15 check VERBOSE=1 make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' (cd Testsuite; make CC="gcc" CFLAGS="-g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security") make[3]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c sqdconfig_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o sqdconfig sqdconfig_main.o -lsquid -lm gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c iospeed_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o iospeed iospeed_main.o -lsquid -lm /usr/bin/ld: iospeed_main.o: in function `main': ./Testsuite/iospeed_main.c:28: warning: the use of `tmpnam' is dangerous, better use `mkstemp' gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -DHAVE_CONFIG_H -L../ -I../ -c rndspeed_main.c gcc -g -O2 -fdebug-prefix-map=/build/biosquid-1.9g+cvs20050121=. -fstack-protector-strong -Wformat -Werror=format-security -L../ -I../ -DHAVE_CONFIG_H -o rndspeed rndspeed_main.o -lsquid -lm make[3]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' (cd Testsuite; make check) make[3]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. fgets(): 0.12u 0.06s 00:00:00.18 Elapsed: 00:00:00 sre_fgets(): 0.18u 0.04s 00:00:00.22 Elapsed: 00:00:00 ReadSeq(): 0.53u 0.02s 00:00:00.55 Elapsed: 00:00:02 iospeed: ok rand(): 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00 sre_random(): 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00 rndspeed: ok x-base-afetch basic tests of afetch ... ok. x-base-alistat basic tests of alistat ... ok. x-base-seqstat basic tests of seqstat ... ok. x-base-sfetch basic tests of sfetch ... ok. x-base-shuffle basic tests of shuffle ... ok. x-base-sindex basic tests of sindex ... ok. x-base-sreformat basic tests of sreformat ... ok. bug-1-sfetch-path sfetch/SSI path bug ... ok. make[3]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -fr -- /tmp/dh-xdg-rundir-YS67Vkws cd Testsuite && make clean make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121/Testsuite' rm -f *.o *~ Makefile.bak core iospeed rndspeed TAGS gmon.out sqdconfig make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121/Testsuite' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/biosquid.substvars debian/libsquid1.substvars debian/libsquid-dev.substvars rm -fr -- debian/.debhelper/generated/biosquid/ debian/biosquid/ debian/tmp/ debian/.debhelper/generated/libsquid1/ debian/libsquid1/ debian/.debhelper/generated/libsquid-dev/ debian/libsquid-dev/ dh_auto_install install -d /build/biosquid-1.9g\+cvs20050121/debian/tmp make -j1 install DESTDIR=/build/biosquid-1.9g\+cvs20050121/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsquid.la '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsquid.so.1.0.0 /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 libtool: install: (cd /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so.1 || { rm -f libsquid.so.1 && ln -s libsquid.so.1.0.0 libsquid.so.1; }; }) libtool: install: (cd /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libsquid.so.1.0.0 libsquid.so || { rm -f libsquid.so && ln -s libsquid.so.1.0.0 libsquid.so; }; }) libtool: install: /usr/bin/install -c .libs/libsquid.lai /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.la libtool: install: /usr/bin/install -c .libs/libsquid.a /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: chmod 644 /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: install: ranlib /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin' libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/afetch /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/afetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/alistat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/alistat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compalign /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compalign libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/compstruct /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/compstruct libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/revcomp /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/revcomp libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqsplit /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqsplit libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/seqstat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/seqstat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sfetch /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sfetch libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/shuffle /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/shuffle libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sindex /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sindex libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/sreformat /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/sreformat libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/translate /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate libtool: warning: 'libsquid.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/weight /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/weight /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /usr/bin/install -c -m 644 dirichlet.h rk.h sqfuncs.h gki.h msa.h sre_random.h sre_stack.h ssi.h stopwatch.h vectorops.h '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/include/biosquid' /bin/mkdir -p '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsquid.pc '/build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_install make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/translate /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/bin/stranslate dh_install install -d debian/biosquid/usr cp --reflink=auto -a debian/tmp/usr/bin debian/biosquid/usr/ install -d debian/.debhelper/generated/biosquid install -d debian/.debhelper/generated/libsquid1 install -d debian/.debhelper/generated/libsquid-dev d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev squid.h usr/include/biosquid \ --movedev squidconf.h usr/include/biosquid \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/libsquid.so Library package automatic movement utility set -e install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libsquid1/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.a debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so debian/libsquid-dev/usr/lib/x86_64-linux-gnu mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1 debian/libsquid1/usr/lib/x86_64-linux-gnu mv /build/biosquid-1.9g+cvs20050121/debian/tmp/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/libsquid1/usr/lib/x86_64-linux-gnu PKGDEV=libsquid-dev PKGSHL=libsquid1 install -d -m 755 debian/libsquid-dev/usr/include mv debian/tmp/usr/include/biosquid debian/libsquid-dev/usr/include install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squid.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/include/biosquid mv squidconf.h debian/libsquid-dev/usr/include/biosquid install -d -m 755 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsquid-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name "lib*.la" -delete # resolve @LICENSE@ by text in header files for HEADER in /build/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/include/biosquid/*.h ; do \ if grep -q '@LICENSE@' ${HEADER} ; then \ sed '/@LICENSE@/,$d' ${HEADER} > ${HEADER}_tmp ; \ sed 's/^/ * /' Licenses/gnu >> ${HEADER}_tmp ; \ sed '0,/@LICENSE@/d' ${HEADER} >> ${HEADER}_tmp ; \ mv ${HEADER}_tmp ${HEADER} ; \ fi ; \ done make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_installdocs install -d debian/biosquid/usr/share/doc/biosquid install -p -m0644 debian/biosquid.README.Debian debian/biosquid/usr/share/doc/biosquid/README.Debian install -p -m0644 debian/copyright debian/biosquid/usr/share/doc/biosquid/copyright install -d debian/libsquid1/usr/share/doc/libsquid1 install -p -m0644 debian/copyright debian/libsquid1/usr/share/doc/libsquid1/copyright install -d debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/README.test debian/libsquid-dev/usr/share/doc/libsquid-dev cp --reflink=auto -a ./debian/tests/run-unit-test debian/libsquid-dev/usr/share/doc/libsquid-dev chmod -R u\+rw,go=rX debian/libsquid-dev/usr/share/doc install -p -m0644 debian/libsquid-dev.README.Debian debian/libsquid-dev/usr/share/doc/libsquid-dev/README.Debian install -p -m0644 debian/copyright debian/libsquid-dev/usr/share/doc/libsquid-dev/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/libsquid1/usr/share/doc/libsquid1/changelog.Debian install -p -m0644 debian/changelog debian/biosquid/usr/share/doc/biosquid/changelog.Debian install -p -m0644 debian/changelog debian/libsquid-dev/usr/share/doc/libsquid-dev/changelog.Debian rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_installexamples install -d debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Testsuite debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cp --reflink=auto -a ./Formats debian/libsquid-dev/usr/share/doc/libsquid-dev/examples cd /build/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite; make clean /bin/sh: 1: cd: can't cd to /build/biosquid-1.9g+cvs20050121/debian/biosquid-dev/usr/share/doc/biosquid-dev/examples/Testsuite make[2]: Entering directory '/build/biosquid-1.9g+cvs20050121' rm -f afetch alistat compalign compstruct revcomp seqsplit seqstat sfetch shuffle sindex sreformat translate weight test -z "libsquid.la" || rm -f libsquid.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/build/biosquid-1.9g+cvs20050121' sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' /build/biosquid-1.9g+cvs20050121/debian/libsquid-dev/usr/share/doc/libsquid-dev/examples/Formats/*.pl make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' rm -f debian/biosquid.debhelper.log debian/libsquid-dev.debhelper.log debian/libsquid1.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/biosquid-1.9g+cvs20050121' dh_installman install -d debian/biosquid/usr/share/man/man1/ install -p -m0644 ./debian/compalign.1 debian/biosquid/usr/share/man/man1/compalign.1 install -p -m0644 ./debian/revcomp.1 debian/biosquid/usr/share/man/man1/revcomp.1 install -p -m0644 ./debian/seqsplit.1 debian/biosquid/usr/share/man/man1/seqsplit.1 install -p -m0644 ./debian/stranslate.1 debian/biosquid/usr/share/man/man1/stranslate.1 install -p -m0644 ./debian/weight.1 debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/compalign.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/revcomp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/weight.1 man-recode --to-code UTF-8 --suffix .dh-new debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/seqsplit.1.dh-new debian/biosquid/usr/share/man/man1/seqsplit.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/seqsplit.1 mv debian/biosquid/usr/share/man/man1/stranslate.1.dh-new debian/biosquid/usr/share/man/man1/stranslate.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/stranslate.1 mv debian/biosquid/usr/share/man/man1/revcomp.1.dh-new debian/biosquid/usr/share/man/man1/revcomp.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/revcomp.1 mv debian/biosquid/usr/share/man/man1/weight.1.dh-new debian/biosquid/usr/share/man/man1/weight.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/weight.1 mv debian/biosquid/usr/share/man/man1/compalign.1.dh-new debian/biosquid/usr/share/man/man1/compalign.1 chmod 0644 -- debian/biosquid/usr/share/man/man1/compalign.1 for manpage in Man/*.man; do \ cp -a ${manpage} /build/biosquid-1.9g+cvs20050121/debian/biosquid/usr/share/man/man1/`basename ${manpage} .man`.1 ; \ done make[1]: Leaving directory '/build/biosquid-1.9g+cvs20050121' dh_perl dh_link rm -f debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1 ln -s libsquid.so.1.0.0 debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1 rm -f debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so ln -s libsquid.so.1.0.0 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.so dh_strip_nondeterminism dh_compress cd debian/biosquid cd debian/libsquid1 cd debian/libsquid-dev chmod a-x usr/share/doc/libsquid-dev/changelog.Debian chmod a-x usr/share/doc/libsquid1/changelog.Debian chmod a-x usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 gzip -9nf usr/share/doc/libsquid-dev/changelog.Debian gzip -9nf usr/share/doc/libsquid1/changelog.Debian cd '/build/biosquid-1.9g+cvs20050121' gzip -9nf usr/share/doc/biosquid/changelog.Debian usr/share/man/man1/afetch.1 usr/share/man/man1/alistat.1 usr/share/man/man1/compalign.1 usr/share/man/man1/compstruct.1 usr/share/man/man1/revcomp.1 usr/share/man/man1/seqsplit.1 usr/share/man/man1/seqstat.1 usr/share/man/man1/sfetch.1 usr/share/man/man1/shuffle.1 usr/share/man/man1/sindex.1 usr/share/man/man1/sreformat.1 usr/share/man/man1/stranslate.1 usr/share/man/man1/weight.1 cd '/build/biosquid-1.9g+cvs20050121' cd '/build/biosquid-1.9g+cvs20050121' dh_fixperms find debian/biosquid ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid1 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libsquid-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/doc -type f -a -true -a ! -regex 'debian/biosquid/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1/usr/share/doc -type f -a -true -a ! -regex 'debian/libsquid1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/biosquid/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libsquid1 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libsquid1/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libsquid-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/biosquid/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libsquid-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -d debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug -- debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight objcopy --compress-debug-sections debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu/biosquid.debug dwz -- debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libsquid-dev/usr/lib/x86_64-linux-gnu/libsquid.a install -d debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/41 objcopy --only-keep-debug --compress-debug-sections debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/41/6eba948c4604ba8f82cb380879748e07f4af9f.debug install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/weight debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f9/f0b093b0887c35cbcd0bf8d5288a62abaa4cce.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f9/f0b093b0887c35cbcd0bf8d5288a62abaa4cce.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/weight objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/f9/f0b093b0887c35cbcd0bf8d5288a62abaa4cce.debug debian/biosquid/usr/bin/weight install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/stranslate debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/61/4740b19843c88d2aa7c722ab72242cdd6d900e.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/61/4740b19843c88d2aa7c722ab72242cdd6d900e.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/stranslate objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/61/4740b19843c88d2aa7c722ab72242cdd6d900e.debug debian/biosquid/usr/bin/stranslate chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/41/6eba948c4604ba8f82cb380879748e07f4af9f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libsquid1/dbgsym-root/usr/lib/debug/.build-id/41/6eba948c4604ba8f82cb380879748e07f4af9f.debug debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -d debian/.debhelper/libsquid1/dbgsym-root/usr/share/doc ln -s libsquid1 debian/.debhelper/libsquid1/dbgsym-root/usr/share/doc/libsquid1-dbgsym install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sreformat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/50/d574f366cb8cb4938473bdd811371356308290.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/50/d574f366cb8cb4938473bdd811371356308290.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sreformat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/50/d574f366cb8cb4938473bdd811371356308290.debug debian/biosquid/usr/bin/sreformat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sindex debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/77/190c9aca63781b8a1e39478fa43d9fec9e593a.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/77/190c9aca63781b8a1e39478fa43d9fec9e593a.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sindex objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/77/190c9aca63781b8a1e39478fa43d9fec9e593a.debug debian/biosquid/usr/bin/sindex install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/shuffle debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/a3/7f5de52a2d7368df7e39f8c8146a7d4d443466.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/a3/7f5de52a2d7368df7e39f8c8146a7d4d443466.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/shuffle objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/a3/7f5de52a2d7368df7e39f8c8146a7d4d443466.debug debian/biosquid/usr/bin/shuffle install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/sfetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/7d9770356f7466db20303d68f7340324ba75ac.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/7d9770356f7466db20303d68f7340324ba75ac.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/sfetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2e/7d9770356f7466db20303d68f7340324ba75ac.debug debian/biosquid/usr/bin/sfetch install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/fa objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqstat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/fa/9cdb22da23279a1da67840b6e7debbcfc78ccb.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/fa/9cdb22da23279a1da67840b6e7debbcfc78ccb.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqstat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/fa/9cdb22da23279a1da67840b6e7debbcfc78ccb.debug debian/biosquid/usr/bin/seqstat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/seqsplit debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b9/d718dca62ebaf38e67db9e2af510d0bdf38e04.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b9/d718dca62ebaf38e67db9e2af510d0bdf38e04.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/seqsplit objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/b9/d718dca62ebaf38e67db9e2af510d0bdf38e04.debug debian/biosquid/usr/bin/seqsplit install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/revcomp debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0c/8f3066d552f024ec4e8a43cf7a226b08693d0b.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0c/8f3066d552f024ec4e8a43cf7a226b08693d0b.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/revcomp objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/0c/8f3066d552f024ec4e8a43cf7a226b08693d0b.debug debian/biosquid/usr/bin/revcomp install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/13 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compstruct debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/13/f3318426e9c4ec638a7eda5f8e3fc12f409aba.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/13/f3318426e9c4ec638a7eda5f8e3fc12f409aba.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compstruct objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/13/f3318426e9c4ec638a7eda5f8e3fc12f409aba.debug debian/biosquid/usr/bin/compstruct install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/compalign debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d1/8955089f1a0f530e3752b303deefb546b20447.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d1/8955089f1a0f530e3752b303deefb546b20447.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/compalign objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/d1/8955089f1a0f530e3752b303deefb546b20447.debug debian/biosquid/usr/bin/compalign install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2b objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/alistat debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2b/468ee47502540cc95e4605e2c8a244f2d27a58.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2b/468ee47502540cc95e4605e2c8a244f2d27a58.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/alistat objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/2b/468ee47502540cc95e4605e2c8a244f2d27a58.debug debian/biosquid/usr/bin/alistat install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8e objcopy --only-keep-debug --compress-debug-sections debian/biosquid/usr/bin/afetch debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8e/432021b265c46bee219d991837924c5f89ff57.debug chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8e/432021b265c46bee219d991837924c5f89ff57.debug strip --remove-section=.comment --remove-section=.note debian/biosquid/usr/bin/afetch objcopy --add-gnu-debuglink debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.build-id/8e/432021b265c46bee219d991837924c5f89ff57.debug debian/biosquid/usr/bin/afetch install -d debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/biosquid/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/biosquid/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/biosquid/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/biosquid/usr/lib/debug install -d debian/.debhelper/biosquid/dbgsym-root/usr/share/doc ln -s biosquid debian/.debhelper/biosquid/dbgsym-root/usr/share/doc/biosquid-dbgsym dh_makeshlibs -a rm -f debian/biosquid/DEBIAN/shlibs rm -f debian/libsquid1/DEBIAN/shlibs install -d debian/libsquid1/DEBIAN echo "libsquid 1 libsquid1 (>= 1.9g+cvs20050121)" >> debian/libsquid1/DEBIAN/shlibs chmod 0644 -- debian/libsquid1/DEBIAN/shlibs mv debian/.debhelper/generated/libsquid1/triggers.new debian/.debhelper/generated/libsquid1/triggers rm -f debian/libsquid-dev/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libsquid1.substvars debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 install -d debian/biosquid/DEBIAN dpkg-shlibdeps -Tdebian/biosquid.substvars debian/biosquid/usr/bin/afetch debian/biosquid/usr/bin/alistat debian/biosquid/usr/bin/compalign debian/biosquid/usr/bin/compstruct debian/biosquid/usr/bin/revcomp debian/biosquid/usr/bin/seqsplit debian/biosquid/usr/bin/seqstat debian/biosquid/usr/bin/sfetch debian/biosquid/usr/bin/shuffle debian/biosquid/usr/bin/sindex debian/biosquid/usr/bin/sreformat debian/biosquid/usr/bin/stranslate debian/biosquid/usr/bin/weight dpkg-shlibdeps: warning: symbol exp used by debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol pow used by debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol tan used by debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol log used by debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sqrt used by debian/libsquid1/usr/lib/x86_64-linux-gnu/libsquid.so.1.0.0 found in none of the libraries dh_installdeb install -p -m0644 debian/.debhelper/generated/libsquid1/triggers debian/libsquid1/DEBIAN/triggers install -d debian/libsquid-dev/DEBIAN dh_gencontrol echo misc:Depends= >> debian/libsquid-dev.substvars echo misc:Pre-Depends= >> debian/libsquid-dev.substvars dpkg-gencontrol -plibsquid-dev -ldebian/changelog -Tdebian/libsquid-dev.substvars -Pdebian/libsquid-dev echo misc:Depends= >> debian/libsquid1.substvars echo misc:Pre-Depends= >> debian/libsquid1.substvars install -d debian/.debhelper/libsquid1/dbgsym-root/DEBIAN dpkg-gencontrol -plibsquid1 -ldebian/changelog -Tdebian/libsquid1.substvars -Pdebian/.debhelper/libsquid1/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=libsquid1-dbgsym "-DDepends=libsquid1 (= \${binary:Version})" "-DDescription=debug symbols for libsquid1" -DBuild-Ids=416eba948c4604ba8f82cb380879748e07f4af9f -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/biosquid.substvars echo misc:Pre-Depends= >> debian/biosquid.substvars install -d debian/.debhelper/biosquid/dbgsym-root/DEBIAN dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -Pdebian/.debhelper/biosquid/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=biosquid-dbgsym "-DDepends=biosquid (= \${binary:Version})" "-DDescription=debug symbols for biosquid" "-DBuild-Ids=0c8f3066d552f024ec4e8a43cf7a226b08693d0b 13f3318426e9c4ec638a7eda5f8e3fc12f409aba 2b468ee47502540cc95e4605e2c8a244f2d27a58 2e7d9770356f7466db20303d68f7340324ba75ac 50d574f366cb8cb4938473bdd811371356308290 614740b19843c88d2aa7c722ab72242cdd6d900e 77190c9aca63781b8a1e39478fa43d9fec9e593a 8e432021b265c46bee219d991837924c5f89ff57 a37f5de52a2d7368df7e39f8c8146a7d4d443466 b9d718dca62ebaf38e67db9e2af510d0bdf38e04 d18955089f1a0f530e3752b303deefb546b20447 f9f0b093b0887c35cbcd0bf8d5288a62abaa4cce fa9cdb22da23279a1da67840b6e7debbcfc78ccb" -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: Depends field of package libsquid-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libsquid-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbiosquid -ldebian/changelog -Tdebian/biosquid.substvars -Pdebian/biosquid chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibsquid1 -ldebian/changelog -Tdebian/libsquid1.substvars -Pdebian/libsquid1 chmod 0644 -- debian/biosquid/DEBIAN/control chmod 0644 -- debian/libsquid1/DEBIAN/control dh_md5sums cd debian/biosquid >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid1 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libsquid-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/biosquid/DEBIAN/md5sums chmod 0644 -- debian/libsquid1/DEBIAN/md5sums chmod 0644 -- debian/libsquid-dev/DEBIAN/md5sums cd debian/.debhelper/libsquid1/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/biosquid/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/biosquid/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libsquid1/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/.debhelper/libsquid1/dbgsym-root .. dpkg-deb --root-owner-group --build debian/biosquid .. dpkg-deb --root-owner-group --build debian/libsquid1 .. dpkg-deb --root-owner-group --build debian/.debhelper/biosquid/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libsquid-dev .. dpkg-deb: building package 'libsquid1' in '../libsquid1_1.9g+cvs20050121-12_amd64.deb'. dpkg-deb: building package 'libsquid1-dbgsym' in '../libsquid1-dbgsym_1.9g+cvs20050121-12_amd64.deb'. dpkg-deb: building package 'biosquid' in '../biosquid_1.9g+cvs20050121-12_amd64.deb'. dpkg-deb: building package 'biosquid-dbgsym' in '../biosquid-dbgsym_1.9g+cvs20050121-12_amd64.deb'. dpkg-deb: building package 'libsquid-dev' in '../libsquid-dev_1.9g+cvs20050121-12_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../biosquid_1.9g+cvs20050121-12_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4000446 and its subdirectories I: Current time: Sun Jul 23 21:38:54 -12 2023 I: pbuilder-time-stamp: 1690191534 Mon Jul 24 09:38:55 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Jul 24 09:38:55 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Jul 24 09:39:44 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Jul 24 09:39:45 UTC 2023 I: biosquid_1.9g+cvs20050121-12_amd64.changes: Format: 1.8 Date: Thu, 13 Aug 2020 14:02:51 +0200 Source: biosquid Binary: biosquid biosquid-dbgsym libsquid-dev libsquid1 libsquid1-dbgsym Architecture: amd64 Version: 1.9g+cvs20050121-12 Distribution: unstable Urgency: medium Maintainer: Debian-Med Packaging Team Changed-By: Andreas Tille Description: biosquid - utilities for biological sequence analysis libsquid-dev - biosquid headers and static library for biological sequence analy libsquid1 - biosquid dynamic library for biological sequence analysis Changes: biosquid (1.9g+cvs20050121-12) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. . [ Andreas Tille ] * Disable pvm (see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957717#17 ) * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Refer to specific version of license GPL-2. * Cleanup test dir to avoid arch-dependent-file-in-usr-share Checksums-Sha1: 155528f21cc82c76d490ff1cd0ac21af588b4eac 156528 biosquid-dbgsym_1.9g+cvs20050121-12_amd64.deb f27fb746ea16ca93c2a121d1ff25ccd9de8b87ab 6710 biosquid_1.9g+cvs20050121-12_amd64.buildinfo aeb120a3cfe9041f270ac47cb231a1b971282bdb 79428 biosquid_1.9g+cvs20050121-12_amd64.deb 41eadf163ebbe6b9e82e1be4631cb44d033d624c 144492 libsquid-dev_1.9g+cvs20050121-12_amd64.deb 331a57f3bb247af7610426e12a126f5698d17400 181324 libsquid1-dbgsym_1.9g+cvs20050121-12_amd64.deb 32c735bc09702c30d7e29d5b01bdd783c1a124c1 76528 libsquid1_1.9g+cvs20050121-12_amd64.deb Checksums-Sha256: efafdf5ec139e15311878414bafb8a869eb1341af40dae030da3a668fc93d6f2 156528 biosquid-dbgsym_1.9g+cvs20050121-12_amd64.deb bb45468813e86046ccf07b2b9fcbc43cf92bc9bceddfc3f306a632009fdb6148 6710 biosquid_1.9g+cvs20050121-12_amd64.buildinfo 2a50654acf8fd7bbe2a723c664fc916f5fac03b08a4548ce66820006a4c1e96f 79428 biosquid_1.9g+cvs20050121-12_amd64.deb 079ab0c2ad231abf0e7ef95d1da46f232c7f7b025b4c75f3c42a0a73e08627f9 144492 libsquid-dev_1.9g+cvs20050121-12_amd64.deb c684cc987dad34212c538ab89ce2be57013cc1a40c8a66de717e136d4e6a6c49 181324 libsquid1-dbgsym_1.9g+cvs20050121-12_amd64.deb 405472e1a6fa3d78117271e46f0cf06946e1f4c1669960134b290dc4c03958e3 76528 libsquid1_1.9g+cvs20050121-12_amd64.deb Files: 2485c7aadee8c1e578a6f7aac4ecad63 156528 debug optional biosquid-dbgsym_1.9g+cvs20050121-12_amd64.deb 78d7389f747377300a46c2fcf5709d13 6710 science optional biosquid_1.9g+cvs20050121-12_amd64.buildinfo 3ebffd1265a10c08864953b78eb4530f 79428 science optional biosquid_1.9g+cvs20050121-12_amd64.deb 84d753be4f293d703f75c1721b071d87 144492 libdevel optional libsquid-dev_1.9g+cvs20050121-12_amd64.deb c9b16dd5129b4d122104094a2f90d21e 181324 debug optional libsquid1-dbgsym_1.9g+cvs20050121-12_amd64.deb 22507a4679092dec3af2a712f01f5023 76528 libs optional libsquid1_1.9g+cvs20050121-12_amd64.deb Mon Jul 24 09:39:46 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/biosquid_1.9g+cvs20050121-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/biosquid_1.9g+cvs20050121-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/biosquid_1.9g+cvs20050121-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/b1/biosquid_1.9g+cvs20050121-12_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ybBSrODx/b2/biosquid_1.9g+cvs20050121-12_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.340s) 0.340s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.035s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Mon Jul 24 09:39:47 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 24 09:39:47 UTC 2023 I: biosquid from bullseye built successfully and reproducibly on amd64. Mon Jul 24 09:39:48 UTC 2023 I: Submitting .buildinfo files to external archives: Mon Jul 24 09:39:48 UTC 2023 I: Submitting 8.0K b1/biosquid_1.9g+cvs20050121-12_amd64.buildinfo.asc Mon Jul 24 09:39:50 UTC 2023 I: Submitting 8.0K b2/biosquid_1.9g+cvs20050121-12_amd64.buildinfo.asc Mon Jul 24 09:39:51 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 24 09:39:51 UTC 2023 I: Done submitting .buildinfo files. Mon Jul 24 09:39:51 UTC 2023 I: Removing signed biosquid_1.9g+cvs20050121-12_amd64.buildinfo.asc files: removed './b1/biosquid_1.9g+cvs20050121-12_amd64.buildinfo.asc' removed './b2/biosquid_1.9g+cvs20050121-12_amd64.buildinfo.asc'