Tue Aug 1 11:25:10 UTC 2023 I: starting to build dnaclust/bullseye/amd64 on jenkins on '2023-08-01 11:24' Tue Aug 1 11:25:10 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/5480/console.log Tue Aug 1 11:25:10 UTC 2023 I: Downloading source for bullseye/dnaclust=3-7 --2023-08-01 11:25:10-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/dnaclust/dnaclust_3-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1977 (1.9K) [text/prs.lines.tag] Saving to: ‘dnaclust_3-7.dsc’ 0K . 100% 178M=0s 2023-08-01 11:25:10 (178 MB/s) - ‘dnaclust_3-7.dsc’ saved [1977/1977] Tue Aug 1 11:25:10 UTC 2023 I: dnaclust_3-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dnaclust Binary: dnaclust Architecture: any Version: 3-7 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://dnaclust.sourceforge.net/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/dnaclust Vcs-Git: https://salsa.debian.org/med-team/dnaclust.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename Package-List: dnaclust deb science optional arch=any Checksums-Sha1: 6d61297157dd954b35122b15d43cc78b5d1a749e 23485 dnaclust_3.orig.tar.gz 883ed45d787563dce965d96f20ac0b110d82de59 36972 dnaclust_3-7.debian.tar.xz Checksums-Sha256: f7fccc3b0507229a03f227af7e104bf218e9976c453c3a8ef9c4a3c2db83fc74 23485 dnaclust_3.orig.tar.gz e18171ee25c15cad70174292b01fdef7763f239c1026e728a848c2653e641c6f 36972 dnaclust_3-7.debian.tar.xz Files: 68e8c69bc10c75b94aea684222f847a9 23485 dnaclust_3.orig.tar.gz 65d934be94276ff7bd5c3fb8a038691e 36972 dnaclust_3-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1NO0MOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtFgkQ//W1dstemveb65X8UResC6Qe/+ek1ud+EShwvH HHbGX6fRaGLD7rNEwUBPYIk3nL6KimUODYn1GyY5yqXirmfkF+b6x7laKFCCQd8m 1KLpNSYWELA8OzZCzwsmpx0JXKqiZtHqDVZl1qh1w6+VlwcLl4MpNZ6nEs1TMZLf ujIxQoZAD9P5vFiiTWcwqY0DQmN+N9McEoastfjTu1If72VAJT74lHUKdImHyIR2 Pimv+v+iy+SUm4t+1p0CUmb+ryoLp0y3e3ZHdRqzOcpcVGaX3jcnRYFi/2o+Cxzv A/PsvAaFWUekFJD0txSHsNuEkE8GsgXSMlF4aLlsPq3lkeWXFTS/haRgpP81Roh6 a3TdOcK55g9qQAb0FidyXyDKiqyfekqxiTNfSzMaFeBi25czy5e3iE+6c5i99qlW p1KUFvNXinnYYkF9zKeyjr1Npjojb9n7r1GdqgpdrLRZvJG56yfKLx/XWsvyofUI GcQJq3D8am9PpWy7It+qFWFWfQLjeoj7ZXag+wIsHw7pwrrF1xB683FE/iD4m+DM 13n0XLSOFI+QN3pi7cfnrnSW+xmNTPtjNGaoyG7fZ0phdm7GVYm2JtU3MgRUf/Nr UrIH/Tk5cXtpq3W48RZasxlWhgpVUh575a25P4qWs7XEARLWSr9XyGC7WbN6mrMe MZODn/g= =gTvt -----END PGP SIGNATURE----- Tue Aug 1 11:25:10 UTC 2023 I: Checking whether the package is not for us Tue Aug 1 11:25:10 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Tue Aug 1 11:25:10 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Tue Aug 1 11:27:50 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jul 31 23:25:15 -12 2023 I: pbuilder-time-stamp: 1690889115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dnaclust_3-7.dsc] I: copying [./dnaclust_3.orig.tar.gz] I: copying [./dnaclust_3-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.L9ol1Cmx/trustedkeys.kbx': General error gpgv: Signature made Thu Aug 8 21:22:11 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dnaclust_3-7.dsc dpkg-source: info: extracting dnaclust in dnaclust-3 dpkg-source: info: unpacking dnaclust_3.orig.tar.gz dpkg-source: info: unpacking dnaclust_3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_shel_path.patch dpkg-source: info: applying do_not_staically_linking.patch dpkg-source: info: applying resolve_name_space_conflict_fastasort.patch dpkg-source: info: applying build_with_gcc6.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3693263/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=15 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6a3d140892fb4c989a872a59f4113cb0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3693263' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/pbuilderrc_6eiI --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/b1 --logfile b1/build.log dnaclust_3-7.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 6.1.0-10-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.38-2 (2023-07-27) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Mar 27 2022 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 69032 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98048 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jan 20 2022 more -rwsr-xr-x 1 root root 55528 Jan 20 2022 mount -rwxr-xr-x 1 root root 18664 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 21:24 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jan 20 2022 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jan 20 2022 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3693263/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on rename; however: Package rename is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} rename{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libio-stringy-perl libltdl-dev libmail-sendmail-perl libpod-parser-perl lynx wget 0 packages upgraded, 37 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 215 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8+deb11u1 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7+deb11u4 [693 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 34 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 37 http://deb.debian.org/debian bullseye/main amd64 rename all 1.13-1 [18.0 kB] Fetched 28.6 MB in 1s (35.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19707 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8+deb11u1_amd64.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../10-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. 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Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dnaclust-3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dnaclust_3-7_source.changes dpkg-buildpackage: info: source package dnaclust dpkg-buildpackage: info: source version 3-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Saira Hussain dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean make -j15 clean make[1]: Entering directory '/build/dnaclust-3' rm -f dnaclust.o dnaclust fasta.o fastaselect.o fastaselect fastasort fastasort.o make[1]: Leaving directory '/build/dnaclust-3' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j15 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/dnaclust-3' g++ -c -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 dnaclust.cpp g++ -c -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fasta.cpp g++ -c -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fastaselect.cpp g++ -c -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 fastasort.cpp -o fastasort.o dnaclust.cpp: In function 'void makeCluster()': dnaclust.cpp:1337:12: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] 1337 | size_t num_threads_to_use = num_threads; | ^~~~~~~~~~~~~~~~~~ dnaclust.cpp:1443:11: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] 1443 | int num_threads_to_use = num_threads; | ^~~~~~~~~~~~~~~~~~ dnaclust.cpp: In function 'int main(int, char**)': dnaclust.cpp:1945:11: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] 1945 | int num_threads_to_use = num_threads; | ^~~~~~~~~~~~~~~~~~ dnaclust.cpp:2135:14: warning: variable 'num_threads_to_use' set but not used [-Wunused-but-set-variable] 2135 | size_t num_threads_to_use = num_threads; | ^~~~~~~~~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastasort.o fasta.o -lboost_program_options -o fastasort g++ -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastaselect.o fasta.o -lboost_program_options -o fastaselect g++ -g -O2 -fdebug-prefix-map=/build/dnaclust-3=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now dnaclust.o fasta.o -lboost_program_options -o dnaclust -lpthread make[1]: Leaving directory '/build/dnaclust-3' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/dnaclust-3' dh_install prename 's/\.sh//' /build/dnaclust-3/debian/dnaclust/usr/bin/* make[1]: Leaving directory '/build/dnaclust-3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dnaclust' in '../dnaclust_3-7_amd64.deb'. dpkg-deb: building package 'dnaclust-dbgsym' in '../dnaclust-dbgsym_3-7_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dnaclust_3-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3693263 and its subdirectories I: Current time: Mon Jul 31 23:27:49 -12 2023 I: pbuilder-time-stamp: 1690889269 Tue Aug 1 11:27:51 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Tue Aug 1 11:27:51 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Tue Aug 1 11:33:16 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Tue Aug 1 11:33:17 UTC 2023 I: dnaclust_3-7_amd64.changes: Format: 1.8 Date: Thu, 08 Aug 2019 13:08:28 +0100 Source: dnaclust Binary: dnaclust dnaclust-dbgsym Architecture: amd64 Version: 3-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Saira Hussain Description: dnaclust - tool for clustering millions of short DNA sequences Changes: dnaclust (3-7) unstable; urgency=medium . * Team upload. . [ Saira Hussain ] * Add autopkgtests . [ Andreas Tille ] * debhelper-compat 12 * Standards-Version: 4.4.0 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/control * Use secure URI in debian/watch. Checksums-Sha1: 95469023a285fccff6bb49ef016ad369bdfdc7a4 1235524 dnaclust-dbgsym_3-7_amd64.deb 6883de0ef295d72f5990b71af67d2cc98f60f35c 5415 dnaclust_3-7_amd64.buildinfo 302efc604c8c3156c7fbbe7b7db5dd9871680dcc 111736 dnaclust_3-7_amd64.deb Checksums-Sha256: c8c8e148576f304183150ae930aec53614f8c7a16fef0f5e5a78f8345da8da43 1235524 dnaclust-dbgsym_3-7_amd64.deb 4b6e57465efae3fd2d718633d88d116b83bf062d5413a4495219f1ea6ae642ca 5415 dnaclust_3-7_amd64.buildinfo e3002f1886befb401edc01448e8d1968dfffa08297f4afa42f2354c9548fa847 111736 dnaclust_3-7_amd64.deb Files: 9593becebac481a8a484678009b84364 1235524 debug optional dnaclust-dbgsym_3-7_amd64.deb af1ad7ad7394d63f048c3efef2022667 5415 science optional dnaclust_3-7_amd64.buildinfo c97e19146d9161d132addf7a75f0994b 111736 science optional dnaclust_3-7_amd64.deb Tue Aug 1 11:33:18 UTC 2023 I: diffoscope 243 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/dnaclust_3-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/dnaclust_3-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/dnaclust_3-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/b1/dnaclust_3-7_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.zIlOIw0W/b2/dnaclust_3-7_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.309s) 0.309s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.085s) 0.085s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Tue Aug 1 11:33:20 UTC 2023 I: diffoscope 243 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 1 11:33:20 UTC 2023 I: dnaclust from bullseye built successfully and reproducibly on amd64. Tue Aug 1 11:33:25 UTC 2023 I: Submitting .buildinfo files to external archives: Tue Aug 1 11:33:25 UTC 2023 I: Submitting 8.0K b1/dnaclust_3-7_amd64.buildinfo.asc Tue Aug 1 11:33:26 UTC 2023 I: Submitting 8.0K b2/dnaclust_3-7_amd64.buildinfo.asc Tue Aug 1 11:33:26 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 1 11:33:26 UTC 2023 I: Done submitting .buildinfo files. Tue Aug 1 11:33:26 UTC 2023 I: Removing signed dnaclust_3-7_amd64.buildinfo.asc files: removed './b1/dnaclust_3-7_amd64.buildinfo.asc' removed './b2/dnaclust_3-7_amd64.buildinfo.asc'