Mon Dec 27 19:40:52 UTC 2021 I: starting to build fenicsx-performance-tests/bullseye/amd64 on jenkins on '2021-12-27 19:40' Mon Dec 27 19:40:52 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_28/100864/console.log Mon Dec 27 19:40:52 UTC 2021 I: Downloading source for bullseye/fenicsx-performance-tests=0.0~git20210119.80e82ac-1 --2021-12-27 19:40:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/fenicsx-performance-tests/fenicsx-performance-tests_0.0%7egit20210119.80e82ac-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2515 (2.5K) Saving to: ‘fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc’ 0K .. 100% 105M=0s 2021-12-27 19:40:53 (105 MB/s) - ‘fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc’ saved [2515/2515] Mon Dec 27 19:40:53 UTC 2021 I: fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fenicsx-performance-tests Binary: fenicsx-performance-tests, fenicsx-performance-tests-source Architecture: any all Version: 0.0~git20210119.80e82ac-1 Maintainer: Debian Science Team Uploaders: Drew Parsons Homepage: https://github.com/FEniCS/performance-test Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests Vcs-Git: https://salsa.debian.org/science-team/fenics/fenicsx-performance-tests.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx Package-List: fenicsx-performance-tests deb libdevel optional arch=any fenicsx-performance-tests-source deb libdevel optional arch=all Checksums-Sha1: ff747b3c43bb59827c5dd13e15896fc21ccbcd1c 13788 fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz 0dd2f1ca94051027f20bd99f2e1ce8cd4b51eb4a 4704 fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz Checksums-Sha256: d987322712ada1546253994ecc852be3db951e779a76cbde28c747d1e2d30d96 13788 fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz 848fbb9c6e7e4eb6c3d4665a14d15cc887e7ba7f0fc658e78b463865cc7b4b75 4704 fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz Files: 196cbc92e19ba648e255c51afbc011a3 13788 fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz 1fa653ec9dbfc5e46e316cd47df3a1a1 4704 fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmAmoeQACgkQVz7x5L1a AfqrfhAApjYQAfGrLStkSD1Va3AM2XALmBZ6lHWQPnU5lk24bOM77fGntWrZMjfi oS4soBRqpv/Rhbw9fAcN9WQpPdas4Y8Se1640y3feNAVAhr+BPUnJlPUglObgrMU QY4MTvZyEh5T3OO1tD9NKKS0aWCg0zPADRCm8h0Y3eOfOWQH5R5fxcYMiPd+AW/Z pMXiC2VP48I3lTgrIUNgfVkch6fUMihoOg3QIEsc4L8hsq2BqPt/WJr2YpwoyOhb VHJYZQ4EuhXYwognPPZ/7oKcxgz+xm6zMMC9MjfbTUuHGP7FDdkBBcKEliaZ66k7 P26FnAwew6WrCBVPRTRITisuxcVnu5Ps4L5euLLBA0jgGKd/iyFt/R84JFe9DO1Y 1RpDpl8PtALCt6YEiYTtdXbN/4lE8yLwPKb285OhWZ4PgCkrXvEIlbZcKIYzEqTD bToKbekq370831O5CMcLtBV1oQtVqjU72bUr1O6iuNa3oNPd1yz4gUu6rpaPtKH/ 4eX40HFgmDwe6ghDE1DSNE88H4J6tZgkrKyC4ugwq13tUeD4ZGn33UtqT3ziuLEC QqGaccuTn//PkcIpBQUp40NlXUxdO5E3LNV75g4MfAEZKrXuJM+7MXjKlCe/45zg f3fZGVoYZ+hJRoUbOr0sl+86aalGzRv6rPmqTwYVfUQmCvM251U= =I8XD -----END PGP SIGNATURE----- Mon Dec 27 19:40:53 UTC 2021 I: Checking whether the package is not for us Mon Dec 27 19:40:53 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Dec 27 19:40:53 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Dec 27 19:46:29 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jan 29 14:04:05 -12 2023 I: pbuilder-time-stamp: 1675044245 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz] I: copying [./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.B6Wgqkz_/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 12 03:42:28 2021 -12 gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc dpkg-source: info: extracting fenicsx-performance-tests in fenicsx-performance-tests-0.0~git20210119.80e82ac dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac.orig.tar.gz dpkg-source: info: unpacking fenicsx-performance-tests_0.0~git20210119.80e82ac-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3687981/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='aa987871079143b798d7219c0a17c82d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3687981' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/pbuilderrc_qbHC --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/b1 --logfile b1/build.log fenicsx-performance-tests_0.0~git20210119.80e82ac-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5476 -rwxr-xr-x 1 root root 1234376 Aug 4 2021 bash -rwxr-xr-x 3 root root 38984 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38984 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 18424 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 43936 Sep 23 2020 cat -rwxr-xr-x 1 root root 72672 Sep 23 2020 chgrp -rwxr-xr-x 1 root root 64448 Sep 23 2020 chmod -rwxr-xr-x 1 root root 72672 Sep 23 2020 chown -rwxr-xr-x 1 root root 151168 Sep 23 2020 cp -rwxr-xr-x 1 root root 125560 Dec 10 2020 dash -rwxr-xr-x 1 root root 113664 Sep 23 2020 date -rwxr-xr-x 1 root root 80968 Sep 23 2020 dd -rwxr-xr-x 1 root root 93936 Sep 23 2020 df -rwxr-xr-x 1 root root 147176 Sep 23 2020 dir -rwxr-xr-x 1 root root 84440 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 39712 Sep 23 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 39680 Sep 23 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 69032 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34896 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 203072 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 98048 Mar 2 2021 gzip -rwxr-xr-x 1 root root 22600 Nov 6 2019 hostname -rwxr-xr-x 1 root root 72840 Sep 23 2020 ln -rwxr-xr-x 1 root root 56952 Feb 7 2020 login -rwxr-xr-x 1 root root 147176 Sep 23 2020 ls -rwxr-xr-x 1 root root 149736 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85184 Sep 23 2020 mkdir -rwxr-xr-x 1 root root 76896 Sep 23 2020 mknod -rwxr-xr-x 1 root root 48064 Sep 23 2020 mktemp -rwxr-xr-x 1 root root 59632 Jul 28 2021 more -rwsr-xr-x 1 root root 55528 Jul 28 2021 mount -rwxr-xr-x 1 root root 18664 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 147080 Sep 23 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43872 Sep 23 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 52032 Sep 23 2020 readlink -rwxr-xr-x 1 root root 72704 Sep 23 2020 rm -rwxr-xr-x 1 root root 52032 Sep 23 2020 rmdir -rwxr-xr-x 1 root root 27472 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 23 03:47 sh -> dash -rwxr-xr-x 1 root root 43808 Sep 23 2020 sleep -rwxr-xr-x 1 root root 84928 Sep 23 2020 stty -rwsr-xr-x 1 root root 71912 Jul 28 2021 su -rwxr-xr-x 1 root root 39744 Sep 23 2020 sync -rwxr-xr-x 1 root root 531928 Feb 16 2021 tar -rwxr-xr-x 1 root root 14456 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 101408 Sep 23 2020 touch -rwxr-xr-x 1 root root 39680 Sep 23 2020 true -rwxr-xr-x 1 root root 14328 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 35040 Jul 28 2021 umount -rwxr-xr-x 1 root root 39744 Sep 23 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 147176 Sep 23 2020 vdir -rwxr-xr-x 1 root root 63744 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/3687981/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~), mpi-default-dev, python3-ffcx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~); however: Package libdolfinx-dev is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffcx; however: Package python3-ffcx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libamd2{a} libarchive-zip-perl{a} libarchive13{a} libarpack2{a} libarpack2-dev{a} libbasix-dev{a} libbasix0{a} libblas-dev{a} libblas3{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbtf1{a} libcamd2{a} libcbor0{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcombblas1.16.0{a} libcurl4{a} libcxsparse3{a} libdebhelper-perl{a} libdolfinx-dev{a} libdolfinx-real-dev{a} libdolfinx-real2019.2{a} libedit2{a} libeigen3-dev{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphblas3{a} libhdf5-mpi-dev{a} libhdf5-openmpi-103-1{a} libhdf5-openmpi-cpp-103-1{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-102{a} libhdf5-openmpi-hl-100{a} libhdf5-openmpi-hl-cpp-100{a} libhdf5-openmpi-hl-fortran-100{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre{a} libhypre-dev{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjsoncpp24{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldl2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmetis5{a} libmongoose2{a} libmpdec3{a} libmumps-5.3{a} libmumps-dev{a} libmumps-headers-dev{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libparpack2{a} libparpack2-dev{a} libpciaccess0{a} libpetsc-real3.14{a} libpetsc-real3.14-dev{a} libpetsc3.14-dev-common{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-6.1{a} libptscotch-dev{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librbio2{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.1{a} libscotch-6.1{a} libscotch-dev{a} libsigsegv2{a} libslepc-real3.14{a} libslepc-real3.14-dev{a} libsliplu1{a} libspqr2{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist6{a} libsuperlu5{a} libsz2{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack5{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-basix{a} python3-cffi{a} python3-cffi-backend{a} python3-ffcx{a} python3-fiat{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-sympy{a} python3-ufl{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common ksh libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgl1-mesa-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libpetsc3.14-dev-examples libsasl2-modules lynx mksh psmisc publicsuffix python3-pil shared-mime-info wget xauth xdg-user-dirs zsh 0 packages upgraded, 251 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After unpacking 922 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main amd64 bsdextrautils amd64 2.36.1-8 [145 kB] Get: 2 http://deb.debian.org/debian bullseye/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 3 http://deb.debian.org/debian bullseye/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get: 4 http://deb.debian.org/debian bullseye/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get: 5 http://deb.debian.org/debian bullseye/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get: 6 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-minimal amd64 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main amd64 python3.9-minimal amd64 3.9.2-1 [1955 kB] Get: 9 http://deb.debian.org/debian bullseye/main amd64 python3-minimal amd64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main amd64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main amd64 libmpdec3 amd64 2.5.1-1 [87.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main amd64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get: 14 http://deb.debian.org/debian bullseye/main amd64 libpython3.9-stdlib amd64 3.9.2-1 [1684 kB] Get: 15 http://deb.debian.org/debian bullseye/main amd64 python3.9 amd64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main amd64 libpython3-stdlib amd64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main amd64 python3 amd64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get: 19 http://deb.debian.org/debian bullseye/main amd64 libprocps8 amd64 2:3.3.17-5 [63.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main amd64 procps amd64 2:3.3.17-5 [502 kB] Get: 21 http://deb.debian.org/debian bullseye/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get: 24 http://deb.debian.org/debian bullseye/main amd64 file amd64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main amd64 gettext-base amd64 0.21-4 [175 kB] Get: 26 http://deb.debian.org/debian bullseye/main amd64 libmd0 amd64 1.0.3-3 [28.0 kB] Get: 27 http://deb.debian.org/debian bullseye/main amd64 libbsd0 amd64 0.11.3-1 [108 kB] Get: 28 http://deb.debian.org/debian bullseye/main amd64 libedit2 amd64 3.1-20191231-2+b1 [96.7 kB] Get: 29 http://deb.debian.org/debian bullseye/main amd64 libcbor0 amd64 0.5.0+dfsg-2 [24.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main amd64 libfido2-1 amd64 1.6.0-2 [53.3 kB] Get: 31 http://deb.debian.org/debian bullseye/main amd64 openssh-client amd64 1:8.4p1-5 [929 kB] Get: 32 http://deb.debian.org/debian bullseye/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get: 33 http://deb.debian.org/debian bullseye/main amd64 m4 amd64 1.4.18-5 [204 kB] Get: 34 http://deb.debian.org/debian bullseye/main amd64 autoconf all 2.69-14 [313 kB] Get: 35 http://deb.debian.org/debian bullseye/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main amd64 automake all 1:1.16.3-2 [814 kB] Get: 37 http://deb.debian.org/debian bullseye/main amd64 autopoint all 0.21-4 [510 kB] Get: 38 http://deb.debian.org/debian bullseye/main amd64 cmake-data all 3.18.4-2+deb11u1 [1725 kB] Get: 39 http://deb.debian.org/debian bullseye/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get: 40 http://deb.debian.org/debian bullseye/main amd64 libxml2 amd64 2.9.10+dfsg-6.7 [693 kB] Get: 41 http://deb.debian.org/debian bullseye/main amd64 libarchive13 amd64 3.4.3-2+b1 [343 kB] Get: 42 http://deb.debian.org/debian bullseye/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get: 43 http://deb.debian.org/debian bullseye/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get: 44 http://deb.debian.org/debian bullseye/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get: 45 http://deb.debian.org/debian bullseye/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-3 [232 kB] Get: 46 http://deb.debian.org/debian bullseye/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get: 47 http://deb.debian.org/debian bullseye/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get: 50 http://deb.debian.org/debian bullseye/main amd64 libcurl4 amd64 7.74.0-1.3+deb11u1 [341 kB] Get: 51 http://deb.debian.org/debian bullseye/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get: 52 http://deb.debian.org/debian bullseye/main amd64 librhash0 amd64 1.4.1-2 [129 kB] Get: 53 http://deb.debian.org/debian bullseye/main amd64 libuv1 amd64 1.40.0-2 [132 kB] Get: 54 http://deb.debian.org/debian bullseye/main amd64 cmake amd64 3.18.4-2+deb11u1 [5593 kB] Get: 55 http://deb.debian.org/debian bullseye/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get: 56 http://deb.debian.org/debian bullseye/main amd64 libtool all 2.4.6-15 [513 kB] Get: 57 http://deb.debian.org/debian bullseye/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian bullseye/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian bullseye/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 60 http://deb.debian.org/debian bullseye/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 61 http://deb.debian.org/debian bullseye/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main amd64 libelf1 amd64 0.183-1 [165 kB] Get: 63 http://deb.debian.org/debian bullseye/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get: 64 http://deb.debian.org/debian bullseye/main amd64 gettext amd64 0.21-4 [1311 kB] Get: 65 http://deb.debian.org/debian bullseye/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 66 http://deb.debian.org/debian bullseye/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian bullseye/main amd64 debhelper all 13.3.4 [1049 kB] Get: 68 http://deb.debian.org/debian bullseye/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 69 http://deb.debian.org/debian bullseye/main amd64 libgfortran5 amd64 10.2.1-6 [727 kB] Get: 70 http://deb.debian.org/debian bullseye/main amd64 libgfortran-10-dev amd64 10.2.1-6 [769 kB] Get: 71 http://deb.debian.org/debian bullseye/main amd64 gfortran-10 amd64 10.2.1-6 [9447 kB] Get: 72 http://deb.debian.org/debian bullseye/main amd64 gfortran amd64 4:10.2.1-1 [1428 B] Get: 73 http://deb.debian.org/debian bullseye/main amd64 libnl-3-200 amd64 3.4.0-1+b1 [63.6 kB] Get: 74 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-200 amd64 3.4.0-1+b1 [161 kB] Get: 75 http://deb.debian.org/debian bullseye/main amd64 libibverbs1 amd64 33.2-1 [59.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main amd64 ibverbs-providers amd64 33.2-1 [253 kB] Get: 77 http://deb.debian.org/debian bullseye/main amd64 icu-devtools amd64 67.1-7 [201 kB] Get: 78 http://deb.debian.org/debian bullseye/main amd64 libaec0 amd64 1.0.4-1 [20.3 kB] Get: 79 http://deb.debian.org/debian bullseye/main amd64 libsz2 amd64 1.0.4-1 [6760 B] Get: 80 http://deb.debian.org/debian bullseye/main amd64 libaec-dev amd64 1.0.4-1 [18.7 kB] Get: 81 http://deb.debian.org/debian bullseye/main amd64 libsuitesparseconfig5 amd64 1:5.8.1+dfsg-2 [23.0 kB] Get: 82 http://deb.debian.org/debian bullseye/main amd64 libamd2 amd64 1:5.8.1+dfsg-2 [35.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main amd64 libblas3 amd64 3.9.0-3 [153 kB] Get: 84 http://deb.debian.org/debian bullseye/main amd64 liblapack3 amd64 3.9.0-3 [2166 kB] Get: 85 http://deb.debian.org/debian bullseye/main amd64 libarpack2 amd64 3.8.0-1 [103 kB] Get: 86 http://deb.debian.org/debian bullseye/main amd64 libblas-dev amd64 3.9.0-3 [161 kB] Get: 87 http://deb.debian.org/debian bullseye/main amd64 liblapack-dev amd64 3.9.0-3 [4247 kB] Get: 88 http://deb.debian.org/debian bullseye/main amd64 libarpack2-dev amd64 3.8.0-1 [117 kB] Get: 89 http://deb.debian.org/debian bullseye/main amd64 libbasix0 amd64 0.0.1~git20210122.4f10ef2-2 [198 kB] Get: 90 http://deb.debian.org/debian bullseye/main amd64 libglib2.0-0 amd64 2.66.8-1 [1370 kB] Get: 91 http://deb.debian.org/debian bullseye/main amd64 pkg-config amd64 0.29.2-1 [65.1 kB] Get: 92 http://deb.debian.org/debian bullseye/main amd64 libeigen3-dev all 3.3.9-2 [858 kB] Get: 93 http://deb.debian.org/debian bullseye/main amd64 libbasix-dev amd64 0.0.1~git20210122.4f10ef2-2 [4220 B] Get: 94 http://deb.debian.org/debian bullseye/main amd64 libboost1.74-dev amd64 1.74.0-9 [9534 kB] Get: 95 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74.0 amd64 1.74.0-9 [244 kB] Get: 96 http://deb.debian.org/debian bullseye/main amd64 libboost-atomic1.74-dev amd64 1.74.0-9 [245 kB] Get: 97 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74.0 amd64 1.74.0-9 [252 kB] Get: 98 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono1.74-dev amd64 1.74.0-9 [260 kB] Get: 99 http://deb.debian.org/debian bullseye/main amd64 libboost-chrono-dev amd64 1.74.0.3 [4960 B] Get: 100 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74.0 amd64 1.74.0-9 [241 kB] Get: 101 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74.0 amd64 1.74.0-9 [340 kB] Get: 102 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization1.74-dev amd64 1.74.0-9 [383 kB] Get: 103 http://deb.debian.org/debian bullseye/main amd64 libboost-date-time1.74-dev amd64 1.74.0-9 [250 kB] Get: 104 http://deb.debian.org/debian bullseye/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 105 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74.0 amd64 1.74.0-9 [283 kB] Get: 106 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74.0 amd64 1.74.0-9 [241 kB] Get: 107 http://deb.debian.org/debian bullseye/main amd64 libboost-system1.74-dev amd64 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem1.74-dev amd64 1.74.0-9 [304 kB] Get: 109 http://deb.debian.org/debian bullseye/main amd64 libboost-filesystem-dev amd64 1.74.0.3 [4368 B] Get: 110 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74.0 amd64 1.74.0-9 [516 kB] Get: 111 http://deb.debian.org/debian bullseye/main amd64 libicu-dev amd64 67.1-7 [9597 kB] Get: 112 http://deb.debian.org/debian bullseye/main amd64 libboost-regex1.74-dev amd64 1.74.0-9 [588 kB] Get: 113 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams1.74-dev amd64 1.74.0-9 [273 kB] Get: 114 http://deb.debian.org/debian bullseye/main amd64 libboost-iostreams-dev amd64 1.74.0.3 [4316 B] Get: 115 http://deb.debian.org/debian bullseye/main amd64 libboost-math1.74.0 amd64 1.74.0-9 [521 kB] Get: 116 http://deb.debian.org/debian bullseye/main amd64 libboost-math1.74-dev amd64 1.74.0-9 [599 kB] Get: 117 http://deb.debian.org/debian bullseye/main amd64 libboost-math-dev amd64 1.74.0.3 [4532 B] Get: 118 http://deb.debian.org/debian bullseye/main amd64 libevent-core-2.1-7 amd64 2.1.12-stable-1 [139 kB] Get: 119 http://deb.debian.org/debian bullseye/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-1 [57.1 kB] Get: 120 http://deb.debian.org/debian bullseye/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.1 [169 kB] Get: 121 http://deb.debian.org/debian bullseye/main amd64 libnuma1 amd64 2.0.12-1+b1 [26.3 kB] Get: 122 http://deb.debian.org/debian bullseye/main amd64 libpsm2-2 amd64 11.2.185-1 [181 kB] Get: 123 http://deb.debian.org/debian bullseye/main amd64 librdmacm1 amd64 33.2-1 [68.9 kB] Get: 124 http://deb.debian.org/debian bullseye/main amd64 libfabric1 amd64 1.11.0-2 [521 kB] Get: 125 http://deb.debian.org/debian bullseye/main amd64 libhwloc15 amd64 2.4.1+dfsg-1 [150 kB] Get: 126 http://deb.debian.org/debian bullseye/main amd64 libpciaccess0 amd64 0.16-1 [53.6 kB] Get: 127 http://deb.debian.org/debian bullseye/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 128 http://deb.debian.org/debian bullseye/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 129 http://deb.debian.org/debian bullseye/main amd64 libxcb1 amd64 1.14-3 [140 kB] Get: 130 http://deb.debian.org/debian bullseye/main amd64 libx11-data all 2:1.7.2-1 [311 kB] Get: 131 http://deb.debian.org/debian bullseye/main amd64 libx11-6 amd64 2:1.7.2-1 [772 kB] Get: 132 http://deb.debian.org/debian bullseye/main amd64 libxext6 amd64 2:1.3.3-1.1 [52.7 kB] Get: 133 http://deb.debian.org/debian bullseye/main amd64 libxnvctrl0 amd64 460.91.03-1 [26.9 kB] Get: 134 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-libopencl1 amd64 2.2.14-2 [42.5 kB] Get: 135 http://deb.debian.org/debian bullseye/main amd64 libhwloc-plugins amd64 2.4.1+dfsg-1 [21.4 kB] Get: 136 http://deb.debian.org/debian bullseye/main amd64 libpmix2 amd64 4.0.0-4.1 [552 kB] Get: 137 http://deb.debian.org/debian bullseye/main amd64 libucx0 amd64 1.10.1~rc1+really.1.10.0-1 [649 kB] Get: 138 http://deb.debian.org/debian bullseye/main amd64 libopenmpi3 amd64 4.1.0-10 [2370 kB] Get: 139 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi1.74.0 amd64 1.74.0-9 [281 kB] Get: 140 http://deb.debian.org/debian bullseye/main amd64 openmpi-common all 4.1.0-10 [179 kB] Get: 141 http://deb.debian.org/debian bullseye/main amd64 libnl-3-dev amd64 3.4.0-1+b1 [102 kB] Get: 142 http://deb.debian.org/debian bullseye/main amd64 libnl-route-3-dev amd64 3.4.0-1+b1 [176 kB] Get: 143 http://deb.debian.org/debian bullseye/main amd64 libibverbs-dev amd64 33.2-1 [487 kB] Get: 144 http://deb.debian.org/debian bullseye/main amd64 libnuma-dev amd64 2.0.12-1+b1 [39.3 kB] Get: 145 http://deb.debian.org/debian bullseye/main amd64 libltdl7 amd64 2.4.6-15 [391 kB] Get: 146 http://deb.debian.org/debian bullseye/main amd64 libltdl-dev amd64 2.4.6-15 [162 kB] Get: 147 http://deb.debian.org/debian bullseye/main amd64 libhwloc-dev amd64 2.4.1+dfsg-1 [231 kB] Get: 148 http://deb.debian.org/debian bullseye/main amd64 libevent-2.1-7 amd64 2.1.12-stable-1 [188 kB] Get: 149 http://deb.debian.org/debian bullseye/main amd64 libevent-extra-2.1-7 amd64 2.1.12-stable-1 [110 kB] Get: 150 http://deb.debian.org/debian bullseye/main amd64 libevent-openssl-2.1-7 amd64 2.1.12-stable-1 [64.1 kB] Get: 151 http://deb.debian.org/debian bullseye/main amd64 libevent-dev amd64 2.1.12-stable-1 [311 kB] Get: 152 http://deb.debian.org/debian bullseye/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-2 [190 kB] Get: 153 http://deb.debian.org/debian bullseye/main amd64 libpmix-dev amd64 4.0.0-4.1 [655 kB] Get: 154 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 155 http://deb.debian.org/debian bullseye/main amd64 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get: 156 http://deb.debian.org/debian bullseye/main amd64 openmpi-bin amd64 4.1.0-10 [238 kB] Get: 157 http://deb.debian.org/debian bullseye/main amd64 libopenmpi-dev amd64 4.1.0-10 [1192 kB] Get: 158 http://deb.debian.org/debian bullseye/main amd64 mpi-default-dev amd64 1.13 [5476 B] Get: 159 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi1.74-dev amd64 1.74.0-9 [303 kB] Get: 160 http://deb.debian.org/debian bullseye/main amd64 libboost-mpi-dev amd64 1.74.0.3 [4420 B] Get: 161 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74.0 amd64 1.74.0-9 [356 kB] Get: 162 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options1.74-dev amd64 1.74.0-9 [386 kB] Get: 163 http://deb.debian.org/debian bullseye/main amd64 libboost-program-options-dev amd64 1.74.0.3 [4340 B] Get: 164 http://deb.debian.org/debian bullseye/main amd64 libboost-serialization-dev amd64 1.74.0.3 [4560 B] Get: 165 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74.0 amd64 1.74.0-9 [279 kB] Get: 166 http://deb.debian.org/debian bullseye/main amd64 libboost-thread1.74-dev amd64 1.74.0-9 [290 kB] Get: 167 http://deb.debian.org/debian bullseye/main amd64 libboost-thread-dev amd64 1.74.0.3 [4356 B] Get: 168 http://deb.debian.org/debian bullseye/main amd64 libboost-timer1.74.0 amd64 1.74.0-9 [250 kB] Get: 169 http://deb.debian.org/debian bullseye/main amd64 libboost-timer1.74-dev amd64 1.74.0-9 [254 kB] Get: 170 http://deb.debian.org/debian bullseye/main amd64 libboost-timer-dev amd64 1.74.0.3 [4456 B] Get: 171 http://deb.debian.org/debian bullseye/main amd64 libbtf1 amd64 1:5.8.1+dfsg-2 [24.8 kB] Get: 172 http://deb.debian.org/debian bullseye/main amd64 libcamd2 amd64 1:5.8.1+dfsg-2 [36.9 kB] Get: 173 http://deb.debian.org/debian bullseye/main amd64 libccolamd2 amd64 1:5.8.1+dfsg-2 [38.8 kB] Get: 174 http://deb.debian.org/debian bullseye/main amd64 libcolamd2 amd64 1:5.8.1+dfsg-2 [32.1 kB] Get: 175 http://deb.debian.org/debian bullseye/main amd64 libmetis5 amd64 5.1.0.dfsg-7 [171 kB] Get: 176 http://deb.debian.org/debian bullseye/main amd64 libcholmod3 amd64 1:5.8.1+dfsg-2 [339 kB] Get: 177 http://deb.debian.org/debian bullseye/main amd64 libcombblas1.16.0 amd64 1.6.2-6 [283 kB] Get: 178 http://deb.debian.org/debian bullseye/main amd64 libcxsparse3 amd64 1:5.8.1+dfsg-2 [80.0 kB] Get: 179 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-103-1 amd64 1.10.6+repack-4+deb11u1 [1236 kB] Get: 180 http://deb.debian.org/debian bullseye/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 181 http://deb.debian.org/debian bullseye/main amd64 libfftw3-long3 amd64 3.3.8-2 [319 kB] Get: 182 http://deb.debian.org/debian bullseye/main amd64 libfftw3-single3 amd64 3.3.8-2 [762 kB] Get: 183 http://deb.debian.org/debian bullseye/main amd64 libfftw3-mpi3 amd64 3.3.8-2 [66.4 kB] Get: 184 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dist6 amd64 6.2.0+dfsg1-3 [417 kB] Get: 185 http://deb.debian.org/debian bullseye/main amd64 libhypre amd64 2.18.2-1 [1415 kB] Get: 186 http://deb.debian.org/debian bullseye/main amd64 libklu1 amd64 1:5.8.1+dfsg-2 [86.3 kB] Get: 187 http://deb.debian.org/debian bullseye/main amd64 mpi-default-bin amd64 1.13 [4672 B] Get: 188 http://deb.debian.org/debian bullseye/main amd64 libscalapack-openmpi2.1 amd64 2.1.0-4 [1539 kB] Get: 189 http://deb.debian.org/debian bullseye/main amd64 libmumps-5.3 amd64 5.3.5-2 [1611 kB] Get: 190 http://deb.debian.org/debian bullseye/main amd64 libptscotch-6.1 amd64 6.1.0-2 [611 kB] Get: 191 http://deb.debian.org/debian bullseye/main amd64 libsuperlu5 amd64 5.2.2+dfsg1-2 [163 kB] Get: 192 http://deb.debian.org/debian bullseye/main amd64 libumfpack5 amd64 1:5.8.1+dfsg-2 [246 kB] Get: 193 http://deb.debian.org/debian bullseye/main amd64 libpetsc-real3.14 amd64 3.14.5+dfsg1-4 [5683 kB] Get: 194 http://deb.debian.org/debian bullseye/main amd64 libparpack2 amd64 3.8.0-1 [99.9 kB] Get: 195 http://deb.debian.org/debian bullseye/main amd64 libslepc-real3.14 amd64 3.14.2+dfsg1-1 [1034 kB] Get: 196 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-real2019.2 amd64 2019.2.0~git20210130.c14cb0a-5 [647 kB] Get: 197 http://deb.debian.org/debian bullseye/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 198 http://deb.debian.org/debian bullseye/main amd64 libpetsc3.14-dev-common all 3.14.5+dfsg1-4 [206 kB] Get: 199 http://deb.debian.org/debian bullseye/main amd64 libgraphblas3 amd64 1:5.8.1+dfsg-2 [4638 kB] Get: 200 http://deb.debian.org/debian bullseye/main amd64 libldl2 amd64 1:5.8.1+dfsg-2 [24.4 kB] Get: 201 http://deb.debian.org/debian bullseye/main amd64 libmongoose2 amd64 1:5.8.1+dfsg-2 [46.9 kB] Get: 202 http://deb.debian.org/debian bullseye/main amd64 librbio2 amd64 1:5.8.1+dfsg-2 [39.9 kB] Get: 203 http://deb.debian.org/debian bullseye/main amd64 libspqr2 amd64 1:5.8.1+dfsg-2 [81.6 kB] Get: 204 http://deb.debian.org/debian bullseye/main amd64 libsliplu1 amd64 1:5.8.1+dfsg-2 [49.6 kB] Get: 205 http://deb.debian.org/debian bullseye/main amd64 libsuitesparse-dev amd64 1:5.8.1+dfsg-2 [5115 kB] Get: 206 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dev amd64 5.2.2+dfsg1-2 [21.4 kB] Get: 207 http://deb.debian.org/debian bullseye/main amd64 libhypre-dev amd64 2.18.2-1 [154 kB] Get: 208 http://deb.debian.org/debian bullseye/main amd64 libscotch-6.1 amd64 6.1.0-2 [373 kB] Get: 209 http://deb.debian.org/debian bullseye/main amd64 libscotch-dev amd64 6.1.0-2 [1383 kB] Get: 210 http://deb.debian.org/debian bullseye/main amd64 libptscotch-dev amd64 6.1.0-2 [1234 kB] Get: 211 http://deb.debian.org/debian bullseye/main amd64 libscalapack-openmpi-dev amd64 2.1.0-4 [13.7 kB] Get: 212 http://deb.debian.org/debian bullseye/main amd64 libscalapack-mpi-dev amd64 2.1.0-4 [9732 B] Get: 213 http://deb.debian.org/debian bullseye/main amd64 libmumps-headers-dev all 5.3.5-2 [34.1 kB] Get: 214 http://deb.debian.org/debian bullseye/main amd64 libmumps-dev amd64 5.3.5-2 [1477 kB] Get: 215 http://deb.debian.org/debian bullseye/main amd64 libfftw3-quad3 amd64 3.3.8-2 [558 kB] Get: 216 http://deb.debian.org/debian bullseye/main amd64 libfftw3-bin amd64 3.3.8-2 [50.7 kB] Get: 217 http://deb.debian.org/debian bullseye/main amd64 libfftw3-dev amd64 3.3.8-2 [2106 kB] Get: 218 http://deb.debian.org/debian bullseye/main amd64 libfftw3-mpi-dev amd64 3.3.8-2 [66.6 kB] Get: 219 http://deb.debian.org/debian bullseye/main amd64 libssl-dev amd64 1.1.1k-1+deb11u1 [1810 kB] Get: 220 http://deb.debian.org/debian bullseye/main amd64 opencl-c-headers all 3.0~2020.12.18-1 [41.8 kB] Get: 221 http://deb.debian.org/debian bullseye/main amd64 opencl-clhpp-headers all 3.0~2.0.13-1 [41.5 kB] Get: 222 http://deb.debian.org/debian bullseye/main amd64 ocl-icd-opencl-dev amd64 2.2.14-2 [11.3 kB] Get: 223 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-fortran-102 amd64 1.10.6+repack-4+deb11u1 [105 kB] Get: 224 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-100 amd64 1.10.6+repack-4+deb11u1 [81.7 kB] Get: 225 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-fortran-100 amd64 1.10.6+repack-4+deb11u1 [56.8 kB] Get: 226 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-cpp-103-1 amd64 1.10.6+repack-4+deb11u1 [142 kB] Get: 227 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-hl-cpp-100 amd64 1.10.6+repack-4+deb11u1 [37.8 kB] Get: 228 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo amd64 1:2.0.6-4 [151 kB] Get: 229 http://deb.debian.org/debian bullseye/main amd64 libjpeg62-turbo-dev amd64 1:2.0.6-4 [278 kB] Get: 230 http://deb.debian.org/debian bullseye/main amd64 libjpeg-dev amd64 1:2.0.6-4 [67.8 kB] Get: 231 http://deb.debian.org/debian bullseye/main amd64 libhdf5-openmpi-dev amd64 1.10.6+repack-4+deb11u1 [2498 kB] Get: 232 http://deb.debian.org/debian bullseye/main amd64 libhdf5-mpi-dev amd64 1.10.6+repack-4+deb11u1 [32.5 kB] Get: 233 http://deb.debian.org/debian bullseye/main amd64 libsuperlu-dist-dev amd64 6.2.0+dfsg1-3 [251 kB] Get: 234 http://deb.debian.org/debian bullseye/main amd64 libpetsc-real3.14-dev amd64 3.14.5+dfsg1-4 [6316 kB] Get: 235 http://deb.debian.org/debian bullseye/main amd64 libparpack2-dev amd64 3.8.0-1 [109 kB] Get: 236 http://deb.debian.org/debian bullseye/main amd64 libslepc-real3.14-dev amd64 3.14.2+dfsg1-1 [4442 kB] Get: 237 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-real-dev amd64 2019.2.0~git20210130.c14cb0a-5 [49.5 kB] Get: 238 http://deb.debian.org/debian bullseye/main amd64 libxml2-dev amd64 2.9.10+dfsg-6.7 [791 kB] Get: 239 http://deb.debian.org/debian bullseye/main amd64 python3-cffi-backend amd64 1.14.5-1 [85.8 kB] Get: 240 http://deb.debian.org/debian bullseye/main amd64 python3-ply all 3.11-4 [65.5 kB] Get: 241 http://deb.debian.org/debian bullseye/main amd64 python3-pycparser all 2.20-3 [74.5 kB] Get: 242 http://deb.debian.org/debian bullseye/main amd64 python3-cffi all 1.14.5-1 [87.9 kB] Get: 243 http://deb.debian.org/debian bullseye/main amd64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 244 http://deb.debian.org/debian bullseye/main amd64 python3-numpy amd64 1:1.19.5-1 [2693 kB] Get: 245 http://deb.debian.org/debian bullseye/main amd64 python3-mpmath all 1.2.1-1 [418 kB] Get: 246 http://deb.debian.org/debian bullseye/main amd64 python3-sympy all 1.7.1-3 [4031 kB] Get: 247 http://deb.debian.org/debian bullseye/main amd64 python3-fiat all 2019.2.0~git20210116.0439689-2 [70.6 kB] Get: 248 http://deb.debian.org/debian bullseye/main amd64 python3-ufl all 2019.2.0~git20210211.d60cd09-1 [156 kB] Get: 249 http://deb.debian.org/debian bullseye/main amd64 python3-basix amd64 0.0.1~git20210122.4f10ef2-2 [89.0 kB] Get: 250 http://deb.debian.org/debian bullseye/main amd64 python3-ffcx all 2019.2.0~git20210122.22ca4c0-2 [106 kB] Get: 251 http://deb.debian.org/debian bullseye/main amd64 libdolfinx-dev all 2019.2.0~git20210130.c14cb0a-5 [149 kB] Fetched 164 MB in 3s (64.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19655 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_amd64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../1-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../3-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:amd64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_amd64.deb ... Unpacking libpython3.9-minimal:amd64 (3.9.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../6-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_amd64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:amd64 (3.9.2-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20522 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_amd64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-1_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:amd64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_amd64.deb ... Unpacking libpython3.9-stdlib:amd64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_amd64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20943 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_amd64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../002-libprocps8_2%3a3.3.17-5_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a3.3.17-5_amd64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:amd64. Preparing to unpack .../009-libmd0_1.0.3-3_amd64.deb ... Unpacking libmd0:amd64 (1.0.3-3) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../010-libbsd0_0.11.3-1_amd64.deb ... Unpacking libbsd0:amd64 (0.11.3-1) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../011-libedit2_3.1-20191231-2+b1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:amd64. Preparing to unpack .../012-libcbor0_0.5.0+dfsg-2_amd64.deb ... Unpacking libcbor0:amd64 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../013-libfido2-1_1.6.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../014-openssh-client_1%3a8.4p1-5_amd64.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../015-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.18.4-2+deb11u1_all.deb ... Unpacking cmake-data (3.18.4-2+deb11u1) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../022-libicu67_67.1-7_amd64.deb ... Unpacking libicu67:amd64 (67.1-7) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.10+dfsg-6.7_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../024-libarchive13_3.4.3-2+b1_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../025-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../028-libldap-2.4-2_2.4.57+dfsg-3_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../029-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../030-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. 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Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up libboost1.74-dev:amd64 (1.74.0-9) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libfftw3-single3:amd64 (3.3.8-2) ... Setting up libboost-atomic1.74.0:amd64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:amd64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libboost-program-options1.74.0:amd64 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up libboost-chrono1.74-dev:amd64 (1.74.0-9) ... Setting up libcbor0:amd64 (0.5.0+dfsg-2) ... Setting up libldl2:amd64 (1:5.8.1+dfsg-2) ... Setting up libnghttp2-14:amd64 (1.43.0-1) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up libfftw3-long3:amd64 (3.3.8-2) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:amd64 (1.74.0-9) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7) ... Setting up file (1:5.39-3) ... Setting up libbtf1:amd64 (1:5.8.1+dfsg-2) ... Setting up libaec0:amd64 (1.0.4-1) ... Setting up libboost-program-options1.74-dev:amd64 (1.74.0-9) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libuv1:amd64 (1.40.0-2) ... Setting up libjpeg62-turbo:amd64 (1:2.0.6-4) ... Setting up libboost-program-options-dev:amd64 (1.74.0.3) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.0.6-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:amd64 (1.74.0-9) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libfftw3-quad3:amd64 (3.3.8-2) ... Setting up libboost-regex1.74.0:amd64 (1.74.0-9) ... Setting up opencl-clhpp-headers (3.0~2.0.13-1) ... Setting up libssl-dev:amd64 (1.1.1k-1+deb11u1) ... Setting up libhwloc15:amd64 (2.4.1+dfsg-1) ... Setting up libevent-core-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libevent-2.1-7:amd64 (2.1.12-stable-1) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up pkg-config (0.29.2-1) ... Setting up libltdl7:amd64 (2.4.6-15) ... Setting up opencl-c-headers (3.0~2020.12.18-1) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:amd64 (10.2.1-6) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up libboost-atomic1.74-dev:amd64 (1.74.0-9) ... Setting up libmumps-headers-dev (5.3.5-2) ... Setting up libboost-math1.74.0:amd64 (1.74.0-9) ... Setting up libboost-serialization1.74.0:amd64 (1.74.0-9) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-2) ... Setting up libnuma1:amd64 (2.0.12-1+b1) ... Setting up libmd0:amd64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up ocl-icd-libopencl1:amd64 (2.2.14-2) ... Setting up librhash0:amd64 (1.4.1-2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libnl-3-200:amd64 (3.4.0-1+b1) ... Setting up libmpdec3:amd64 (2.5.1-1) ... Setting up libpsm2-2 (11.2.185-1) ... Setting up openmpi-common (4.1.0-10) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgfortran-10-dev:amd64 (10.2.1-6) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up libcxsparse3:amd64 (1:5.8.1+dfsg-2) ... Setting up cmake-data (3.18.4-2+deb11u1) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libboost-math1.74-dev:amd64 (1.74.0-9) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.1) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libboost-filesystem1.74-dev:amd64 (1.74.0-9) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-date-time1.74.0:amd64 (1.74.0-9) ... Setting up libscotch-6.1:amd64 (6.1.0-2) ... Setting up libfido2-1:amd64 (1.6.0-2) ... Setting up libbsd0:amd64 (0.11.3-1) ... Setting up libelf1:amd64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libboost-timer1.74.0:amd64 (1.74.0-9) ... Setting up libicu-dev:amd64 (67.1-7) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.7) ... Setting up libsuitesparseconfig5:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-filesystem-dev:amd64 (1.74.0.3) ... Setting up libprocps8:amd64 (2:3.3.17-5) ... Setting up libblas-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.0.4-1) ... Setting up librbio2:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-thread1.74.0:amd64 (1.74.0-9) ... Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libevent-extra-2.1-7:amd64 (2.1.12-stable-1) ... Setting up liblapack3:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libcolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2+b1) ... Setting up libboost-chrono-dev:amd64 (1.74.0.3) ... Setting up libfftw3-bin (3.3.8-2) ... Setting up libboost-math-dev:amd64 (1.74.0.3) ... Setting up libedit2:amd64 (3.1-20191231-2+b1) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libaec-dev:amd64 (1.0.4-1) ... Setting up libarpack2:amd64 (3.8.0-1) ... Setting up libjpeg-dev:amd64 (1:2.0.6-4) ... Setting up libsuperlu5:amd64 (5.2.2+dfsg1-2) ... Setting up libevent-openssl-2.1-7:amd64 (2.1.12-stable-1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnuma-dev:amd64 (2.0.12-1+b1) ... Setting up libnl-route-3-200:amd64 (3.4.0-1+b1) ... Setting up libsliplu1:amd64 (1:5.8.1+dfsg-2) ... Setting up libcamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up libmongoose2:amd64 (1:5.8.1+dfsg-2) ... Setting up libxml2-dev:amd64 (2.9.10+dfsg-6.7) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libevent-dev (2.1.12-stable-1) ... Setting up liblapack-dev:amd64 (3.9.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.3.9-2) ... Setting up gfortran-10 (10.2.1-6) ... Setting up libboost-timer1.74-dev:amd64 (1.74.0-9) ... Setting up ocl-icd-opencl-dev:amd64 (2.2.14-2) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:amd64 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:amd64 (1.74.0-9) ... Setting up libnl-3-dev:amd64 (3.4.0-1+b1) ... Setting up groff-base (1.22.4-6) ... Setting up libklu1:amd64 (1:5.8.1+dfsg-2) ... Setting up libccolamd2:amd64 (1:5.8.1+dfsg-2) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:amd64 (7.74.0-1.3+deb11u1) ... Setting up libx11-6:amd64 (2:1.7.2-1) ... Setting up libsuperlu-dev:amd64 (5.2.2+dfsg1-2) ... Setting up libbasix-dev:amd64 (0.0.1~git20210122.4f10ef2-2) ... Setting up libfftw3-dev:amd64 (3.3.8-2) ... Setting up libcholmod3:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-timer-dev:amd64 (1.74.0.3) ... Setting up libpython3.9-stdlib:amd64 (3.9.2-1) ... Setting up libpython3-stdlib:amd64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libspqr2:amd64 (1:5.8.1+dfsg-2) ... Setting up libibverbs1:amd64 (33.2-1) ... Setting up libarpack2-dev:amd64 (3.8.0-1) ... Setting up ibverbs-providers:amd64 (33.2-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:amd64 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxnvctrl0:amd64 (460.91.03-1) ... Setting up libboost-iostreams1.74-dev:amd64 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:amd64 (3.4.0-1+b1) ... Setting up libboost-date-time1.74-dev:amd64 (1.74.0-9) ... Setting up libltdl-dev:amd64 (2.4.6-15) ... Setting up libumfpack5:amd64 (1:5.8.1+dfsg-2) ... Setting up libboost-serialization-dev:amd64 (1.74.0.3) ... Setting up cmake (3.18.4-2+deb11u1) ... Setting up libboost-thread1.74-dev:amd64 (1.74.0-9) ... Setting up libhwloc-dev:amd64 (2.4.1+dfsg-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libboost-thread-dev:amd64 (1.74.0.3) ... Setting up librdmacm1:amd64 (33.2-1) ... Setting up libucx0:amd64 (1.10.1~rc1+really.1.10.0-1) ... Setting up libsuitesparse-dev:amd64 (1:5.8.1+dfsg-2) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libboost-iostreams-dev:amd64 (1.74.0.3) ... Setting up libibverbs-dev:amd64 (33.2-1) ... Setting up libhwloc-plugins:amd64 (2.4.1+dfsg-1) ... Setting up libpetsc3.14-dev-common (3.14.5+dfsg1-4) ... Setting up python3-mpmath (1.2.1-1) ... Setting up python3-cffi-backend:amd64 (1.14.5-1) ... Setting up python3-basix (0.0.1~git20210122.4f10ef2-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up libfabric1 (1.11.0-2) ... Setting up python3-sympy (1.7.1-3) ... Setting up libpmix2:amd64 (4.0.0-4.1) ... Setting up libopenmpi3:amd64 (4.1.0-10) ... Setting up python3-ply (3.11-4) ... Setting up libboost-mpi1.74.0 (1.74.0-9) ... Setting up libptscotch-6.1:amd64 (6.1.0-2) ... Setting up libfftw3-mpi3:amd64 (3.3.8-2) ... Setting up python3-pycparser (2.20-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up libpmix-dev:amd64 (4.0.0-4.1) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up python3-fiat (2019.2.0~git20210116.0439689-2) ... Setting up libparpack2:amd64 (3.8.0-1) ... Setting up libcombblas1.16.0:amd64 (1.6.2-6) ... Setting up python3-ufl (2019.2.0~git20210211.d60cd09-1) ... Setting up python3-cffi (1.14.5-1) ... Setting up libfftw3-mpi-dev:amd64 (3.3.8-2) ... Setting up mpi-default-bin (1.13) ... Setting up python3-ffcx (2019.2.0~git20210122.22ca4c0-2) ... Setting up libhdf5-openmpi-fortran-102:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libsuperlu-dist6:amd64 (6.2.0+dfsg1-3) ... Setting up libopenmpi-dev:amd64 (4.1.0-10) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-cpp-103-1:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-cpp-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libhdf5-openmpi-hl-fortran-100:amd64 (1.10.6+repack-4+deb11u1) ... Setting up libscalapack-openmpi2.1:amd64 (2.1.0-4) ... Setting up libhypre:amd64 (2.18.2-1) ... Setting up libsuperlu-dist-dev:amd64 (6.2.0+dfsg1-3) ... Setting up libscalapack-openmpi-dev:amd64 (2.1.0-4) ... Setting up libmumps-5.3:amd64 (5.3.5-2) ... Setting up mpi-default-dev (1.13) ... Setting up libscalapack-mpi-dev:amd64 (2.1.0-4) ... Setting up libhdf5-openmpi-dev (1.10.6+repack-4+deb11u1) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libmumps-dev:amd64 (5.3.5-2) ... Setting up libscotch-dev (6.1.0-2) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libparpack2-dev:amd64 (3.8.0-1) ... Setting up libpetsc-real3.14:amd64 (3.14.5+dfsg1-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.14 (libpetsc.so.3.14) in auto mode Setting up libhypre-dev:amd64 (2.18.2-1) ... Setting up libptscotch-dev (6.1.0-2) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libhdf5-mpi-dev (1.10.6+repack-4+deb11u1) ... Setting up libslepc-real3.14 (3.14.2+dfsg1-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.14 (libslepc.so.3.14) in auto mode Setting up libdolfinx-real2019.2:amd64 (2019.2.0~git20210130.c14cb0a-5) ... Setting up libpetsc-real3.14-dev:amd64 (3.14.5+dfsg1-4) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.14.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.14 (petsc3.14) in auto mode Setting up libslepc-real3.14-dev (3.14.2+dfsg1-1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.14.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.14 (slepc3.14) in auto mode Setting up libdolfinx-real-dev:amd64 (2019.2.0~git20210130.c14cb0a-5) ... Setting up libdolfinx-dev (2019.2.0~git20210130.c14cb0a-5) ... Processing triggers for libc-bin (2.31-13+deb11u2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_source.changes dpkg-buildpackage: info: source package fenicsx-performance-tests dpkg-buildpackage: info: source version 0.0~git20210119.80e82ac-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Drew Parsons dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake --sourcedirectory=src dh_auto_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf_clean -O--buildsystem=cmake -O--sourcedirectory=src dh_clean -O--buildsystem=cmake -O--sourcedirectory=src debian/rules binary dh binary --buildsystem=cmake --sourcedirectory=src dh_update_autotools_config -O--buildsystem=cmake -O--sourcedirectory=src dh_autoreconf -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_configure -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ../src -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS timer;filesystem -- Found boost_headers 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_headers-1.74.0 -- Found boost_timer 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_timer-1.74.0 -- [x] libboost_timer.so.1.74.0 -- [ ] libboost_timer.a -- Adding boost_timer dependencies: chrono;headers -- Found boost_chrono 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_chrono-1.74.0 -- [x] libboost_chrono.so.1.74.0 -- [ ] libboost_chrono.a -- Adding boost_chrono dependencies: headers -- Found boost_filesystem 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_filesystem-1.74.0 -- [x] libboost_filesystem.so.1.74.0 -- [ ] libboost_filesystem.a -- Adding boost_filesystem dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: timer filesystem -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h CMake Warning (dev) at /usr/share/cmake-3.18/Modules/CheckIncludeFile.cmake:80 (message): Policy CMP0075 is not set: Include file check macros honor CMAKE_REQUIRED_LIBRARIES. Run "cmake --help-policy CMP0075" for policy details. Use the cmake_policy command to set the policy and suppress this warning. CMAKE_REQUIRED_LIBRARIES is set to: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so For compatibility with CMake 3.11 and below this check is ignoring it. Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/CheckTypeSize.cmake:230 (check_include_file) /usr/share/dolfinx/cmake/FindPETSc.cmake:222 (check_type_size) /usr/share/cmake-3.18/Modules/CMakeFindDependencyMacro.cmake:47 (find_package) /usr/share/dolfinx/cmake/DOLFINXConfig.cmake:61 (find_dependency) CMakeLists.txt:13 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - done -- Looking for PETSC_USE_COMPLEX -- Looking for PETSC_USE_COMPLEX - not found -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Found Boost 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0 -- Requested configuration: QUIET REQUIRED COMPONENTS program_options -- Found boost_program_options 1.74.0 at /usr/lib/x86_64-linux-gnu/cmake/boost_program_options-1.74.0 -- [x] libboost_program_options.so.1.74.0 -- [ ] libboost_program_options.a -- Adding boost_program_options dependencies: headers -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found suitable version "1.74.0", minimum required is "1.70") found components: program_options -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' make -f CMakeFiles/dolfinx-scaling-test.dir/build.make CMakeFiles/dolfinx-scaling-test.dir/depend make[3]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' [ 11%] Generating Poisson.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Poisson.ufl [ 22%] Generating Elasticity.c ffcx /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/Elasticity.ufl cd "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" --color= Dependee "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/DependInfo.cmake" is newer than depender "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles/dolfinx-scaling-test.dir/depend.internal". 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"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src/poisson_problem.cpp" /usr/bin/cc -DBOOST_ALL_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_TIMER_DYN_LINK -DDOLFINX_VERSION=\"2019.2.9.99\" -DEIGEN_MAX_ALIGN_BYTES=32 -DHAS_SLEPC -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" -I"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -isystem /usr/lib/python3/dist-packages/ffcx/codegeneration -isystem /usr/include/eigen3 -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -isystem /usr/lib/slepcdir/slepc3.14/x86_64-linux-gnu-real/include -g -O2 -fdebug-prefix-map=/build/fenicsx-performance-tests-0.0~git20210119.80e82ac=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -pthread -o 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'/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' [100%] Built target dolfinx-scaling-test make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/CMakeFiles" 0 make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' debian/tests/run-dolfinx-scaling-test -p /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu ==== elasticity weak scaling (8 processes with ndofs=10000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: weak Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.39757 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.49277 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=522, cols=522, bs=6 package used to perform factorization: petsc total: nonzeros=234036, allocated nonzeros=234036 using I-node routines: found 140 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=522, cols=522, bs=6 total: nonzeros=156780, allocated nonzeros=156780 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 174 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=522, cols=522, bs=6 total: nonzeros=156780, allocated nonzeros=156780 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 174 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.18063, max = 1.98693 eigenvalues estimate via cg min 0.0265908, max 1.8063 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6384, cols=6384, bs=6 total: nonzeros=1202112, allocated nonzeros=1202112 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 192 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.26114, max = 2.87253 eigenvalues estimate via cg min 0.0503502, max 2.6114 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3153 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3153 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot ------------------------------------------------------------------------------------------ Build BoxMesh | 1 6.656169 6.656169 Build dofmap data | 2 0.230286 0.460571 Build sparsity | 1 0.062125 0.062125 Compute SCOTCH graph re-ordering | 2 0.001054 0.002108 Compute dof reordering map | 2 0.013699 0.027397 Compute entities of dim = 1 | 1 0.527283 0.527283 Compute entities of dim = 2 | 1 0.451672 0.451672 Compute graph partition (SCOTCH) | 1 5.490835 5.490835 Compute local part of mesh dual graph | 1 0.065003 0.065003 Compute local-to-local map | 1 0.000580 0.000580 Compute non-local part of mesh dual graph | 1 0.108714 0.108714 Compute-local-to-global links for global/local adjacency list | 1 0.000307 0.000307 Distribute in graph creation AdjacencyList | 1 0.020043 0.020043 Extract partition boundaries from SCOTCH graph | 1 0.000796 0.000796 Fetch float data from remote processes | 1 0.050051 0.050051 Get SCOTCH graph data | 1 0.000010 0.000010 Init dofmap from element dofmap | 2 0.004278 0.008555 PETSc Krylov solver | 1 7.171848 7.171848 SCOTCH: call SCOTCH_dgraphBuild | 1 0.016342 0.016342 SCOTCH: call SCOTCH_dgraphHalo | 1 0.012800 0.012800 SCOTCH: call SCOTCH_dgraphPart | 1 5.459219 5.459219 SCOTCH: call SCOTCH_graphBuild | 2 0.000007 0.000014 SCOTCH: call SCOTCH_graphOrder | 2 0.000923 0.001845 SparsityPattern::assemble | 1 0.179867 0.179867 TOPOLOGY: Create sets | 1 0.033278 0.033278 ZZZ Assemble matrix | 1 0.467593 0.467593 ZZZ Assemble vector | 1 0.022137 0.022137 ZZZ Create Mesh | 1 6.656754 6.656754 ZZZ Create RHS function | 1 0.084635 0.084635 ZZZ Create boundary conditions | 1 0.054860 0.054860 ZZZ Create forms | 1 0.000081 0.000081 ZZZ Create mesh entity permutations | 1 0.995911 0.995911 ZZZ Create near-nullspace | 1 0.446988 0.446988 ZZZ FunctionSpace | 1 0.223797 0.223797 ZZZ Solve | 1 7.262660 7.262660 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 8 processors, by pbuilder1 Sun Jan 29 14:07:53 2023 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.680e+01 1.001 1.679e+01 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.833e+08 1.374 2.255e+08 1.804e+09 Flop/sec: 1.687e+07 1.375 1.343e+07 1.074e+08 MPI Messages: 2.418e+03 1.615 1.884e+03 1.507e+04 MPI Message Lengths: 1.420e+07 1.831 5.383e+03 8.114e+07 MPI Reductions: 6.490e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.6792e+01 100.0% 1.8037e+09 100.0% 1.507e+04 100.0% 5.383e+03 100.0% 6.420e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 8.9074e-01 2.0 0.00e+00 0.0 8.4e+02 4.0e+00 9.5e+01 4 0 6 0 15 4 0 6 0 15 0 BuildTwoSidedF 76 1.0 7.7834e-01 2.4 0.00e+00 0.0 4.1e+02 5.8e+04 7.6e+01 3 0 3 29 12 3 0 3 29 12 0 MatMult 192 1.0 1.9724e+00 1.2 1.22e+08 1.1 7.6e+03 3.6e+03 0.0e+00 11 51 51 34 0 11 51 51 34 0 463 MatMultAdd 34 1.0 5.1320e-01 1.5 8.52e+06 1.1 7.5e+02 1.2e+03 0.0e+00 3 4 5 1 0 3 4 5 1 0 131 MatMultTranspose 34 1.0 3.7071e-01 1.7 8.53e+06 1.1 7.5e+02 1.2e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 181 MatSolve 17 0.0 1.2376e-02 0.0 7.95e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 642 MatLUFactorSym 1 1.0 2.6168e-021954.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 1.0183e-0162164.3 6.84e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 672 MatScale 6 1.0 1.6800e-02 2.6 6.07e+05 1.0 8.0e+01 1.0e+03 0.0e+00 0 0 1 0 0 0 0 1 0 0 284 MatResidual 34 1.0 3.9330e-01 1.2 2.11e+07 1.2 1.4e+03 3.4e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 399 MatAssemblyBegin 41 1.0 6.4398e-01 2.8 0.00e+00 0.0 4.1e+02 5.8e+04 1.6e+01 2 0 3 29 2 2 0 3 29 2 0 MatAssemblyEnd 41 1.0 4.9537e-01 1.1 2.45e+05 2.8 9.6e+02 3.5e+02 7.0e+01 3 0 6 0 11 3 0 6 0 11 2 MatGetRowIJ 1 0.0 1.7251e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 2.1216e-01 1.1 0.00e+00 0.0 4.9e+01 3.7e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 5.3742e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 9.5789e-02 1.1 0.00e+00 0.0 6.4e+02 7.4e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 MatZeroEntries 2 1.0 4.4446e-0315.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 4.7976e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 1.4862e-02 2.6 6.61e+04 1.1 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 34 MatTranspose 4 1.0 1.3811e-02 2.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 2.7000e-01 1.3 0.00e+00 0.0 4.0e+02 6.4e+03 2.0e+01 1 0 3 3 3 1 0 3 3 3 0 MatMatMultNum 2 1.0 4.4489e-02 1.4 7.37e+06 1.2 8.0e+01 2.0e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 1221 MatPtAPSymbolic 2 1.0 6.4639e-01 1.0 0.00e+00 0.0 4.9e+02 3.3e+04 1.4e+01 4 0 3 20 2 4 0 3 20 2 0 MatPtAPNumeric 2 1.0 6.8331e-01 1.0 7.48e+07 1.3 3.6e+02 3.9e+04 1.2e+01 4 28 2 17 2 4 28 2 17 2 741 MatTrnMatMultSym 1 1.0 2.1580e-01 1.0 0.00e+00 0.0 2.6e+02 1.9e+04 1.3e+01 1 0 2 6 2 1 0 2 6 2 0 MatGetLocalMat 7 1.0 1.3671e-02 2.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 6.0462e-02 1.7 0.00e+00 0.0 5.6e+02 3.0e+04 0.0e+00 0 0 4 20 0 0 0 4 20 0 0 VecDot 36 1.0 2.8770e-01 1.1 7.48e+05 1.1 0.0e+00 0.0e+00 3.6e+01 2 0 0 0 6 2 0 0 0 6 20 VecMDot 20 1.0 7.3084e-02 2.1 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 130 VecTDot 74 1.0 7.1681e-01 1.2 1.14e+06 1.1 0.0e+00 0.0e+00 7.4e+01 4 0 0 0 11 4 0 0 0 12 12 VecNorm 68 1.0 6.3098e-01 1.5 9.93e+05 1.1 0.0e+00 0.0e+00 6.8e+01 3 0 0 0 10 3 0 0 0 11 12 VecScale 28 1.0 3.6028e-04 1.5 1.86e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 3979 VecCopy 116 1.0 1.4648e-03 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 8.6286e-0315.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 3.1743e-03 1.3 1.32e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3217 VecAYPX 237 1.0 1.2416e-02 3.6 2.04e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1268 VecAXPBYCZ 68 1.0 2.1266e-03 1.4 1.91e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6921 VecMAXPY 22 1.0 9.4111e-0310.0 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1196 VecAssemblyBegin 61 1.0 2.3463e-01 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 1 0 0 0 9 1 0 0 0 9 0 VecAssemblyEnd 61 1.0 1.7404e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 6.0584e-03 1.3 1.01e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1286 VecScatterBegin 327 1.0 1.4913e-02 1.5 0.00e+00 0.0 1.2e+04 2.8e+03 0.0e+00 0 0 79 41 0 0 0 79 41 0 0 VecScatterEnd 327 1.0 2.6103e+00 1.1 3.80e+04 4.6 0.0e+00 0.0e+00 0.0e+00 14 0 0 0 0 14 0 0 0 0 0 VecSetRandom 2 1.0 6.2515e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 1.1097e-01 1.2 5.58e+05 1.1 0.0e+00 0.0e+00 2.8e+01 1 0 0 0 4 1 0 0 0 4 39 SFSetGraph 19 1.0 6.4889e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 2.2743e-01 1.6 0.00e+00 0.0 1.3e+03 3.5e+02 1.9e+01 1 0 8 1 3 1 0 8 1 3 0 SFBcastOpBegin 303 1.0 1.3701e-02 1.5 0.00e+00 0.0 1.2e+04 2.8e+03 0.0e+00 0 0 77 40 0 0 0 77 40 0 0 SFBcastOpEnd 303 1.0 2.4200e+00 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 13 0 0 0 0 13 0 0 0 0 0 SFReduceBegin 35 1.0 7.1145e-04 1.3 0.00e+00 0.0 7.8e+02 1.2e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 3.5733e-01 1.8 3.80e+04 4.6 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0 SFPack 338 1.0 4.1805e-03 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 338 1.0 4.2754e-04 1.4 3.80e+04 4.6 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 281 KSPSetUp 7 1.0 8.4028e-01 1.0 1.37e+07 1.2 8.0e+02 3.4e+03 7.2e+01 5 6 5 3 11 5 6 5 3 11 123 KSPSolve 1 1.0 7.1025e+00 1.0 2.80e+08 1.4 1.5e+04 5.1e+03 5.5e+02 42 99 97 93 85 42 99 97 93 86 250 KSPGMRESOrthog 20 1.0 7.4367e-02 1.9 2.47e+06 1.1 0.0e+00 0.0e+00 2.0e+01 0 1 0 0 3 0 1 0 0 3 256 PCGAMGGraph_AGG 2 1.0 3.8258e-01 1.1 6.72e+05 1.2 4.0e+02 4.0e+02 3.8e+01 2 0 3 0 6 2 0 3 0 6 13 PCGAMGCoarse_AGG 2 1.0 3.3940e-01 1.0 0.00e+00 0.0 1.1e+03 5.6e+03 3.0e+01 2 0 7 8 5 2 0 7 8 5 0 PCGAMGProl_AGG 2 1.0 6.5618e-01 1.0 0.00e+00 0.0 2.6e+03 1.4e+03 1.9e+02 4 0 17 5 29 4 0 17 5 29 0 PCGAMGPOpt_AGG 2 1.0 4.6107e-01 1.0 2.33e+07 1.1 1.3e+03 5.4e+03 8.2e+01 3 10 9 9 13 3 10 9 9 13 380 GAMG: createProl 2 1.0 1.8325e+00 1.0 2.39e+07 1.1 5.4e+03 3.1e+03 3.4e+02 11 10 36 21 52 11 10 36 21 53 98 Graph 4 1.0 3.8241e-01 1.1 6.72e+05 1.2 4.0e+02 4.0e+02 3.8e+01 2 0 3 0 6 2 0 3 0 6 13 MIS/Agg 2 1.0 9.5844e-02 1.1 0.00e+00 0.0 6.4e+02 7.4e+02 9.0e+00 1 0 4 1 1 1 0 4 1 1 0 SA: col data 2 1.0 5.9130e-01 1.0 0.00e+00 0.0 2.4e+03 1.2e+03 1.7e+02 4 0 16 3 26 4 0 16 3 26 0 SA: frmProl0 2 1.0 3.2511e-02 1.0 0.00e+00 0.0 2.0e+02 4.5e+03 1.2e+01 0 0 1 1 2 0 0 1 1 2 0 SA: smooth 2 1.0 2.4659e-01 1.0 7.94e+06 1.2 4.8e+02 8.7e+03 2.8e+01 1 3 3 5 4 1 3 3 5 4 238 GAMG: partLevel 2 1.0 1.5383e+00 1.0 7.48e+07 1.3 9.4e+02 3.4e+04 8.1e+01 9 28 6 39 12 9 28 6 39 13 329 repartition 1 1.0 2.2943e-01 1.1 0.00e+00 0.0 9.4e+01 2.0e+04 5.5e+01 1 0 1 2 8 1 0 1 2 9 0 Invert-Sort 1 1.0 1.5114e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 7.6373e-02 1.1 0.00e+00 0.0 3.5e+01 5.1e+04 1.6e+01 0 0 0 2 2 0 0 0 2 2 0 Move P 1 1.0 1.5186e-01 1.1 0.00e+00 0.0 1.4e+01 4.4e+02 1.7e+01 1 0 0 0 3 1 0 0 0 3 0 PCSetUp 2 1.0 4.3926e+00 1.0 1.65e+08 1.8 7.2e+03 7.2e+03 5.0e+02 26 48 48 64 77 26 48 48 64 78 195 PCSetUpOnBlocks 17 1.0 1.2868e-01817.2 6.84e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 532 PCApply 39 1.0 2.2935e+00 1.1 1.69e+08 1.8 6.9e+03 3.0e+03 4.0e+00 13 48 46 25 1 13 48 46 25 1 378 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 25406624 0. Matrix Coarsen 2 2 1264 0. Matrix Null Space 1 1 704 0. Index Set 55 55 135140 0. IS L to G Mapping 6 6 93932 0. Vec Scatter 17 17 13872 0. Vector 185 185 4259728 0. Star Forest Graph 19 19 21888 0. Krylov Solver 9 9 72064 0. Preconditioner 9 9 9148 0. Viewer 3 2 1696 0. PetscRandom 4 4 2616 0. ======================================================================================================================== Average time to get PetscTime(): 8.25e-08 Average time for MPI_Barrier(): 6.66e-06 Average time for zero size MPI_Send(): 2.96462e-06 #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type elasticity --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: weak ==== elasticity strong scaling (8 processes with ndofs=80000) ==== UnitCube (29x26x32) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: elasticity Scaling type: strong Num processes: 8 Num cells 144768 Total degrees of freedom: 80190 Average degrees of freedom per process: 10023 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: gamg type is MULTIPLICATIVE, levels=3 cycles=v Cycles per PCApply=1 Using externally compute Galerkin coarse grid matrices GAMG specific options Threshold for dropping small values in graph on each level = 0. Threshold scaling factor for each level not specified = 1. AGG specific options Symmetric graph false Number of levels to square graph 1 Number smoothing steps 1 Complexity: grid = 1.40182 Coarse grid solver -- level ------------------------------- KSP Object: (mg_coarse_) 8 MPI processes type: preonly maximum iterations=10000, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_) 8 MPI processes type: bjacobi number of blocks = 8 Local solver is the same for all blocks, as in the following KSP and PC objects on rank 0: KSP Object: (mg_coarse_sub_) 1 MPI processes type: preonly maximum iterations=1, initial guess is zero tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_coarse_sub_) 1 MPI processes type: lu out-of-place factorization tolerance for zero pivot 2.22045e-14 using diagonal shift on blocks to prevent zero pivot [INBLOCKS] matrix ordering: nd factor fill ratio given 5., needed 1.45859 Factored matrix follows: Mat Object: 1 MPI processes type: seqaij rows=540, cols=540, bs=6 package used to perform factorization: petsc total: nonzeros=238392, allocated nonzeros=238392 using I-node routines: found 149 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 1 MPI processes type: seqaij rows=540, cols=540, bs=6 total: nonzeros=163440, allocated nonzeros=163440 total number of mallocs used during MatSetValues calls=0 using I-node routines: found 179 nodes, limit used is 5 linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=540, cols=540, bs=6 total: nonzeros=163440, allocated nonzeros=163440 total number of mallocs used during MatSetValues calls=0 using I-node (on process 0) routines: found 179 nodes, limit used is 5 Down solver (pre-smoother) on level 1 ------------------------------- KSP Object: (mg_levels_1_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.170505, max = 1.87556 eigenvalues estimate via cg min 0.0184882, max 1.70505 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_1_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_1_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=6438, cols=6438, bs=6 total: nonzeros=1209996, allocated nonzeros=1209996 total number of mallocs used during MatSetValues calls=0 using scalable MatPtAP() implementation using I-node (on process 0) routines: found 222 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) Down solver (pre-smoother) on level 2 ------------------------------- KSP Object: (mg_levels_2_) 8 MPI processes type: chebyshev eigenvalue estimates used: min = 0.260885, max = 2.86974 eigenvalues estimate via cg min 0.049571, max 2.60885 eigenvalues estimated using cg with translations [0. 0.1; 0. 1.1] KSP Object: (mg_levels_2_esteig_) 8 MPI processes type: cg maximum iterations=10, initial guess is zero tolerances: relative=1e-12, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test estimating eigenvalues using noisy right hand side maximum iterations=2, nonzero initial guess tolerances: relative=1e-05, absolute=1e-50, divergence=10000. left preconditioning using NONE norm type for convergence test PC Object: (mg_levels_2_) 8 MPI processes type: jacobi linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3284 nodes, limit used is 5 Up solver (post-smoother) same as down solver (pre-smoother) linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=80190, cols=80190, bs=3 total: nonzeros=3418020, allocated nonzeros=3418020 total number of mallocs used during MatSetValues calls=0 has attached near null space using I-node (on process 0) routines: found 3284 nodes, limit used is 5 [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 5.492418 5.492418 Build dofmap data | 2 0.206452 0.412904 Build sparsity | 1 0.089194 0.089194 Compute SCOTCH graph re-ordering | 2 0.000928 0.001857 Compute dof reordering map | 2 0.011233 0.022466 Compute entities of dim = 1 | 1 0.502018 0.502018 Compute entities of dim = 2 | 1 0.414662 0.414662 Compute graph partition (SCOTCH) | 1 4.564004 4.564004 Compute local part of mesh dual graph | 1 0.065607 0.065607 Compute local-to-local map | 1 0.000555 0.000555 Compute non-local part of mesh dual graph | 1 0.048763 0.048763 Compute-local-to-global links for global/local adjacency list | 1 0.000313 0.000313 Distribute in graph creation AdjacencyList | 1 0.031594 0.031594 Extract partition boundaries from SCOTCH graph | 1 0.000787 0.000787 Fetch float data from remote processes | 1 0.041960 0.041960 Get SCOTCH graph data | 1 0.000010 0.000010 Init dofmap from element dofmap | 2 0.004771 0.009543 PETSc Krylov solver | 1 12.710482 12.710482 SCOTCH: call SCOTCH_dgraphBuild | 1 0.000223 0.000223 SCOTCH: call SCOTCH_dgraphHalo | 1 0.014324 0.014324 SCOTCH: call SCOTCH_dgraphPart | 1 4.545320 4.545320 SCOTCH: call SCOTCH_graphBuild | 2 0.000007 0.000014 SCOTCH: call SCOTCH_graphOrder | 2 0.000807 0.001614 SparsityPattern::assemble | 1 0.207983 0.207983 TOPOLOGY: Create sets | 1 0.039814 0.039814 ZZZ Assemble matrix | 1 0.490539 0.490539 ZZZ Assemble vector | 1 0.026612 0.026612 ZZZ Create Mesh | 1 5.492993 5.492993 ZZZ Create RHS function | 1 0.078150 0.078150 ZZZ Create boundary conditions | 1 0.050284 0.050284 ZZZ Create forms | 1 0.000079 0.000079 ZZZ Create mesh entity permutations | 1 0.932093 0.932093 ZZZ Create near-nullspace | 1 0.630819 0.630819 ZZZ FunctionSpace | 1 0.207081 0.207081 ZZZ Solve | 1 12.859125 12.859125 *** Number of Krylov iterations: 16 *** Solution norm: 6.02584e-05 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 8 processors, by pbuilder1 Sun Jan 29 14:08:19 2023 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 2.146e+01 1.001 2.144e+01 Objects: 3.780e+02 1.005 3.762e+02 Flop: 2.736e+08 1.298 2.264e+08 1.811e+09 Flop/sec: 1.276e+07 1.298 1.056e+07 8.448e+07 MPI Messages: 2.609e+03 1.734 1.980e+03 1.584e+04 MPI Message Lengths: 1.303e+07 1.658 5.070e+03 8.033e+07 MPI Reductions: 6.510e+02 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.1442e+01 100.0% 1.8114e+09 100.0% 1.584e+04 100.0% 5.070e+03 100.0% 6.440e+02 98.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 95 1.0 1.5437e+00 1.4 0.00e+00 0.0 8.9e+02 4.0e+00 9.5e+01 6 0 6 0 15 6 0 6 0 15 0 BuildTwoSidedF 76 1.0 1.2202e+00 1.5 0.00e+00 0.0 4.5e+02 5.3e+04 7.6e+01 5 0 3 29 12 5 0 3 29 12 0 MatMult 192 1.0 2.7612e+00 1.2 1.23e+08 1.2 8.1e+03 3.4e+03 0.0e+00 12 51 51 34 0 12 51 51 34 0 331 MatMultAdd 34 1.0 5.5080e-01 1.4 8.85e+06 1.1 8.2e+02 1.1e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 123 MatMultTranspose 34 1.0 4.4281e-01 1.5 8.86e+06 1.1 8.2e+02 1.1e+03 0.0e+00 2 4 5 1 0 2 4 5 1 0 153 MatSolve 17 0.0 1.5040e-02 0.0 8.10e+06 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 538 MatLUFactorSym 1 1.0 1.6472e-021143.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatLUFactorNum 1 1.0 4.8265e-0226061.0 6.68e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 1384 MatScale 6 1.0 2.8822e-02 2.9 6.27e+05 1.1 8.4e+01 9.4e+02 0.0e+00 0 0 1 0 0 0 0 1 0 0 166 MatResidual 34 1.0 5.0776e-01 1.2 2.13e+07 1.2 1.4e+03 3.2e+03 0.0e+00 2 9 9 6 0 2 9 9 6 0 310 MatAssemblyBegin 41 1.0 8.0068e-01 3.3 0.00e+00 0.0 4.5e+02 5.3e+04 1.6e+01 2 0 3 29 2 2 0 3 29 2 0 MatAssemblyEnd 41 1.0 1.1183e+00 1.0 1.89e+05 2.7 9.9e+02 3.4e+02 7.0e+01 5 0 6 0 11 5 0 6 0 11 1 MatGetRowIJ 1 0.0 1.9997e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCreateSubMat 2 1.0 2.6398e-01 1.0 0.00e+00 0.0 4.9e+01 3.8e+04 3.0e+01 1 0 0 2 5 1 0 0 2 5 0 MatGetOrdering 1 0.0 5.2991e-04 0.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatCoarsen 2 1.0 3.3539e-01 1.1 0.00e+00 0.0 7.1e+02 6.7e+02 1.1e+01 1 0 5 1 2 1 0 5 1 2 0 MatZeroEntries 2 1.0 4.1801e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 6 1.5 8.9666e-02 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 1 0 0 0 0 1 0 MatAXPY 2 1.0 4.5348e-02 1.6 6.74e+04 1.2 0.0e+00 0.0e+00 2.0e+00 0 0 0 0 0 0 0 0 0 0 11 MatTranspose 4 1.0 1.4546e-02 3.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatMatMultSym 6 1.0 5.7136e-01 1.1 0.00e+00 0.0 4.2e+02 6.1e+03 2.0e+01 3 0 3 3 3 3 0 3 3 3 0 MatMatMultNum 2 1.0 7.9980e-02 1.6 7.50e+06 1.2 8.4e+01 1.9e+04 2.0e+00 0 3 1 2 0 0 3 1 2 0 680 MatPtAPSymbolic 2 1.0 7.8786e-01 1.0 0.00e+00 0.0 5.0e+02 3.1e+04 1.4e+01 4 0 3 20 2 4 0 3 20 2 0 MatPtAPNumeric 2 1.0 9.0673e-01 1.0 7.17e+07 1.3 3.6e+02 3.9e+04 1.2e+01 4 28 2 18 2 4 28 2 18 2 566 MatTrnMatMultSym 1 1.0 3.0384e-01 1.1 0.00e+00 0.0 2.9e+02 1.7e+04 1.3e+01 1 0 2 6 2 1 0 2 6 2 0 MatGetLocalMat 7 1.0 1.2502e-02 3.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatGetBrAoCol 6 1.0 1.7987e-01 1.1 0.00e+00 0.0 5.9e+02 2.8e+04 0.0e+00 1 0 4 20 0 1 0 4 20 0 0 VecDot 36 1.0 4.3922e-01 1.2 7.41e+05 1.1 0.0e+00 0.0e+00 3.6e+01 2 0 0 0 6 2 0 0 0 6 13 VecMDot 20 1.0 4.2547e-01 6.3 1.24e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 22 VecTDot 74 1.0 9.8279e-01 1.5 1.13e+06 1.1 0.0e+00 0.0e+00 7.4e+01 4 0 0 0 11 4 0 0 0 11 9 VecNorm 68 1.0 1.1530e+00 1.5 9.85e+05 1.1 0.0e+00 0.0e+00 6.8e+01 4 0 0 0 10 4 0 0 0 11 7 VecScale 28 1.0 5.4551e-04 2.0 1.85e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2629 VecCopy 116 1.0 1.3040e-03 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 179 1.0 6.7634e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 83 1.0 3.3464e-03 1.2 1.31e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 3052 VecAYPX 237 1.0 5.6305e-03 1.2 2.04e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2797 VecAXPBYCZ 68 1.0 2.2078e-03 1.3 1.91e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 6670 VecMAXPY 22 1.0 1.5873e-03 2.3 1.46e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 7095 VecAssemblyBegin 61 1.0 7.5302e-01 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+01 3 0 0 0 9 3 0 0 0 9 0 VecAssemblyEnd 61 1.0 4.0550e-04 3.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecPointwiseMult 180 1.0 5.2058e-03 1.2 1.01e+06 1.1 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1498 VecScatterBegin 327 1.0 1.6765e-02 1.9 0.00e+00 0.0 1.2e+04 2.6e+03 0.0e+00 0 0 79 41 0 0 0 79 41 0 0 VecScatterEnd 327 1.0 4.0286e+00 1.1 3.58e+04 4.3 0.0e+00 0.0e+00 0.0e+00 18 0 0 0 0 18 0 0 0 0 0 VecSetRandom 2 1.0 7.5059e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecNormalize 28 1.0 5.8773e-01 3.2 5.55e+05 1.1 0.0e+00 0.0e+00 2.8e+01 2 0 0 0 4 2 0 0 0 4 7 SFSetGraph 19 1.0 6.4448e-05 2.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 19 1.0 4.9863e-01 1.1 0.00e+00 0.0 1.3e+03 3.3e+02 1.9e+01 2 0 8 1 3 2 0 8 1 3 0 SFBcastOpBegin 305 1.0 1.5339e-02 2.0 0.00e+00 0.0 1.2e+04 2.6e+03 0.0e+00 0 0 77 40 0 0 0 77 40 0 0 SFBcastOpEnd 305 1.0 3.8307e+00 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 17 0 0 0 0 17 0 0 0 0 0 SFReduceBegin 35 1.0 8.9183e-04 1.5 0.00e+00 0.0 8.6e+02 1.1e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 35 1.0 4.4308e-01 1.6 3.58e+04 4.3 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0 SFPack 340 1.0 3.4568e-03 1.9 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 340 1.0 5.5779e-04 1.5 3.58e+04 4.3 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 215 KSPSetUp 7 1.0 9.4030e-01 1.0 1.39e+07 1.2 8.4e+02 3.2e+03 7.2e+01 4 6 5 3 11 4 6 5 3 11 110 KSPSolve 1 1.0 1.2576e+01 1.0 2.71e+08 1.3 1.5e+04 4.9e+03 5.5e+02 59 99 97 93 85 59 99 97 93 86 142 KSPGMRESOrthog 20 1.0 4.2679e-01 6.3 2.47e+06 1.1 0.0e+00 0.0e+00 2.0e+01 1 1 0 0 3 1 1 0 0 3 45 PCGAMGGraph_AGG 2 1.0 6.9234e-01 1.0 6.79e+05 1.2 4.2e+02 3.8e+02 3.8e+01 3 0 3 0 6 3 0 3 0 6 7 PCGAMGCoarse_AGG 2 1.0 7.8377e-01 1.0 0.00e+00 0.0 1.2e+03 5.0e+03 3.2e+01 4 0 8 8 5 4 0 8 8 5 0 PCGAMGProl_AGG 2 1.0 2.8079e+00 1.0 0.00e+00 0.0 2.6e+03 1.4e+03 1.9e+02 13 0 16 5 29 13 0 16 5 29 0 PCGAMGPOpt_AGG 2 1.0 1.6001e+00 1.0 2.37e+07 1.2 1.3e+03 5.1e+03 8.2e+01 7 10 8 9 13 7 10 8 9 13 110 GAMG: createProl 2 1.0 5.8612e+00 1.0 2.44e+07 1.2 5.6e+03 3.0e+03 3.4e+02 27 10 35 21 52 27 10 35 21 53 31 Graph 4 1.0 6.9212e-01 1.0 6.79e+05 1.2 4.2e+02 3.8e+02 3.8e+01 3 0 3 0 6 3 0 3 0 6 7 MIS/Agg 2 1.0 3.3543e-01 1.1 0.00e+00 0.0 7.1e+02 6.7e+02 1.1e+01 1 0 5 1 2 1 0 5 1 2 0 SA: col data 2 1.0 2.5117e+00 1.0 0.00e+00 0.0 2.4e+03 1.2e+03 1.7e+02 12 0 15 3 26 12 0 15 3 26 0 SA: frmProl0 2 1.0 2.1593e-01 1.1 0.00e+00 0.0 2.3e+02 3.9e+03 1.2e+01 1 0 1 1 2 1 0 1 1 2 0 SA: smooth 2 1.0 6.4329e-01 1.0 8.09e+06 1.2 5.0e+02 8.2e+03 2.8e+01 3 3 3 5 4 3 3 3 5 4 92 GAMG: partLevel 2 1.0 2.1206e+00 1.0 7.17e+07 1.3 9.6e+02 3.3e+04 8.1e+01 10 28 6 40 12 10 28 6 40 13 242 repartition 1 1.0 4.3925e-01 1.0 0.00e+00 0.0 9.4e+01 2.0e+04 5.5e+01 2 0 1 2 8 2 0 1 2 9 0 Invert-Sort 1 1.0 4.7785e-02 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 6.0e+00 0 0 0 0 1 0 0 0 0 1 0 Move A 1 1.0 1.2812e-01 1.1 0.00e+00 0.0 3.5e+01 5.2e+04 1.6e+01 1 0 0 2 2 1 0 0 2 2 0 Move P 1 1.0 1.6374e-01 1.1 0.00e+00 0.0 1.4e+01 4.8e+02 1.7e+01 1 0 0 0 3 1 0 0 0 3 0 PCSetUp 2 1.0 9.0293e+00 1.0 1.56e+08 1.7 7.4e+03 7.0e+03 5.0e+02 42 48 46 64 77 42 48 46 64 78 96 PCSetUpOnBlocks 17 1.0 6.5452e-02389.4 6.68e+07 0.0 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 1021 PCApply 39 1.0 2.8879e+00 1.1 1.67e+08 1.8 7.3e+03 2.7e+03 4.0e+00 13 48 46 25 1 13 48 46 25 1 300 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 68 68 25218664 0. Matrix Coarsen 2 2 1264 0. Matrix Null Space 1 1 704 0. Index Set 55 55 116312 0. IS L to G Mapping 6 6 87644 0. Vec Scatter 17 17 13872 0. Vector 185 185 4363432 0. Star Forest Graph 19 19 21888 0. Krylov Solver 9 9 72064 0. Preconditioner 9 9 9148 0. Viewer 3 2 1696 0. PetscRandom 4 4 2616 0. ======================================================================================================================== Average time to get PetscTime(): 6.84e-08 Average time for MPI_Barrier(): 0.00276466 Average time for zero size MPI_Send(): 3.81198e-05 #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type elasticity --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -matptap_via scalable -mg_levels_esteig_ksp_type cg -mg_levels_ksp_type chebyshev -mg_levels_pc_type jacobi -options_left -pc_gamg_coarse_eq_limit 1000 -pc_type gamg #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: elasticity Option left: name:--scaling_type value: strong ==== poisson weak scaling (8 processes with ndofs=10000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: weak Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 3.946929 3.946929 Build dofmap data | 2 0.191036 0.382071 Build sparsity | 1 0.230551 0.230551 Compute SCOTCH graph re-ordering | 2 0.005965 0.011930 Compute connectivity 2-3 | 1 0.003098 0.003098 Compute dof reordering map | 2 0.034527 0.069054 Compute entities of dim = 1 | 1 0.787102 0.787102 Compute entities of dim = 2 | 1 0.476156 0.476156 Compute graph partition (SCOTCH) | 1 2.756613 2.756613 Compute local part of mesh dual graph | 1 0.144018 0.144018 Compute local-to-local map | 1 0.002974 0.002974 Compute non-local part of mesh dual graph | 1 0.085186 0.085186 Compute-local-to-global links for global/local adjacency list | 1 0.001076 0.001076 Distribute in graph creation AdjacencyList | 1 0.049311 0.049311 Extract partition boundaries from SCOTCH graph | 1 0.002134 0.002134 Fetch float data from remote processes | 1 0.044870 0.044870 Get SCOTCH graph data | 1 0.000010 0.000010 Init dofmap from element dofmap | 2 0.015809 0.031617 PETSc Krylov solver | 1 12.429326 12.429326 SCOTCH: call SCOTCH_dgraphBuild | 1 0.023438 0.023438 SCOTCH: call SCOTCH_dgraphHalo | 1 0.020767 0.020767 SCOTCH: call SCOTCH_dgraphPart | 1 2.704347 2.704347 SCOTCH: call SCOTCH_graphBuild | 2 0.000016 0.000033 SCOTCH: call SCOTCH_graphOrder | 2 0.005149 0.010298 SparsityPattern::assemble | 1 0.258167 0.258167 TOPOLOGY: Create sets | 1 0.067702 0.067702 ZZZ Assemble | 1 1.463571 1.463571 ZZZ Assemble matrix | 1 0.261543 0.261543 ZZZ Assemble vector | 1 0.034355 0.034355 ZZZ Create Mesh | 1 3.947532 3.947532 ZZZ Create mesh entity permutations | 1 1.304489 1.304489 ZZZ FunctionSpace | 1 0.104206 0.104206 ZZZ Solve | 1 12.503306 12.503306 *** Number of Krylov iterations: 8 *** Solution norm: 45514.8 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 8 processors, by pbuilder1 Sun Jan 29 14:08:53 2023 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 1.940e+01 1.001 1.939e+01 Objects: 3.800e+01 1.000 3.800e+01 Flop: 4.036e+06 1.071 3.911e+06 3.129e+07 Flop/sec: 2.082e+05 1.071 2.017e+05 1.614e+06 MPI Messages: 1.330e+02 1.750 9.025e+01 7.220e+02 MPI Message Lengths: 5.861e+05 1.353 5.339e+03 3.855e+06 MPI Reductions: 6.900e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 1.9391e+01 100.0% 3.1289e+07 100.0% 7.220e+02 100.0% 5.339e+03 100.0% 6.200e+01 89.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.5180e-01 2.5 0.00e+00 0.0 1.5e+02 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 6 0 BuildTwoSidedF 1 1.0 1.0195e-01 7.4 0.00e+00 0.0 7.6e+01 1.4e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatMult 8 1.0 7.8856e-02 1.9 2.29e+06 1.1 3.0e+02 3.7e+03 0.0e+00 0 57 42 29 0 0 57 42 29 0 225 MatConvert 1 1.0 1.6783e-01 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 1 0 0 0 6 1 0 0 0 6 0 MatAssemblyBegin 2 1.0 1.0588e-01 3.8 0.00e+00 0.0 7.6e+01 1.4e+04 1.0e+00 0 0 11 28 1 0 0 11 28 2 0 MatAssemblyEnd 2 1.0 1.9375e-01 1.1 7.27e+03 1.6 7.6e+01 9.2e+02 9.0e+00 1 0 11 2 13 1 0 11 2 15 0 MatGetRowIJ 2 1.0 3.4090e-06 2.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 7.5538e-04 3.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 6.0343e-04 3.5 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 16 1.0 1.5927e-01 1.5 3.30e+05 1.1 0.0e+00 0.0e+00 1.6e+01 1 8 0 0 23 1 8 0 0 26 16 VecNorm 10 1.0 1.4790e-01 2.3 2.07e+05 1.1 0.0e+00 0.0e+00 1.0e+01 1 5 0 0 14 1 5 0 0 16 11 VecCopy 2 1.0 1.2325e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 12 1.0 1.9053e-04 1.2 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 16 1.0 8.0045e-04 1.3 3.30e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 3178 VecAYPX 7 1.0 3.6620e-04 1.7 1.45e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 3040 VecScatterBegin 11 1.0 7.3052e-04 1.5 0.00e+00 0.0 4.2e+02 3.1e+03 0.0e+00 0 0 58 33 0 0 0 58 33 0 0 VecScatterEnd 11 1.0 9.9443e-02 2.5 1.07e+03 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.5793e-05 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.0765e-01 1.8 0.00e+00 0.0 2.3e+02 5.3e+02 3.0e+00 0 0 32 3 4 0 0 32 3 5 0 SFBcastOpBegin 10 1.0 6.4192e-04 1.5 0.00e+00 0.0 3.8e+02 3.2e+03 0.0e+00 0 0 53 32 0 0 0 53 32 0 0 SFBcastOpEnd 10 1.0 8.9482e-02 2.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 3.2730e-05 1.4 0.00e+00 0.0 3.8e+01 1.3e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 2.2853e-0210.8 1.07e+03 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 11 1.0 1.5817e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 11 1.0 6.7596e-05 2.9 1.07e+03 1.5 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 95 KSPSetUp 1 1.0 1.2855e-04 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 1.2433e+01 1.0 3.28e+06 1.1 3.0e+02 3.7e+03 2.9e+01 64 81 42 29 42 64 81 42 29 47 2 PCSetUp 1 1.0 7.1931e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 37 0 0 0 6 37 0 0 0 6 0 PCApply 9 1.0 4.9856e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 26 0 0 0 0 26 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2104528 0. Index Set 6 6 19816 0. IS L to G Mapping 4 4 176876 0. Vec Scatter 3 3 2448 0. Vector 14 14 377504 0. Star Forest Graph 3 3 3456 0. Krylov Solver 1 1 1488 0. Preconditioner 1 1 1456 0. Viewer 2 1 848 0. ======================================================================================================================== Average time to get PetscTime(): 8.18e-08 Average time for MPI_Barrier(): 6.375e-06 Average time for zero size MPI_Send(): 0.0014937 #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 10000 --problem_type poisson --scaling_type weak -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 10000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: weak ==== poisson strong scaling (8 processes with ndofs=80000) ==== UnitCube (42x42x42) to be refined 0 times ---------------------------------------------------------------- Test problem summary dolfinx version: 2019.2.9.99 dolfinx hash: unknown ufl hash: ac78d56bf5c7fcc5585cc7f0654188e75f1c73b1 petsc version: Petsc Release Version 3.14.5, Mar 03, 2021 Problem type: poisson Scaling type: strong Num processes: 8 Num cells 444528 Total degrees of freedom: 79507 Average degrees of freedom per process: 9938 ---------------------------------------------------------------- KSP Object: 8 MPI processes type: cg maximum iterations=10000, initial guess is zero tolerances: relative=1e-08, absolute=1e-50, divergence=10000. left preconditioning using PRECONDITIONED norm type for convergence test PC Object: 8 MPI processes type: hypre HYPRE BoomerAMG preconditioning Cycle type V Maximum number of levels 25 Maximum number of iterations PER hypre call 1 Convergence tolerance PER hypre call 0. Threshold for strong coupling 0.5 Interpolation truncation factor 0. Interpolation: max elements per row 0 Number of levels of aggressive coarsening 0 Number of paths for aggressive coarsening 1 Maximum row sums 0.9 Sweeps down 1 Sweeps up 1 Sweeps on coarse 1 Relax down symmetric-SOR/Jacobi Relax up symmetric-SOR/Jacobi Relax on coarse Gaussian-elimination Relax weight (all) 1. Outer relax weight (all) 1. Using CF-relaxation Not using more complex smoothers. Measure type local Coarsen type Falgout Interpolation type classical linear system matrix = precond matrix: Mat Object: 8 MPI processes type: mpiaij rows=79507, cols=79507 total: nonzeros=1148743, allocated nonzeros=1148743 total number of mallocs used during MatSetValues calls=0 not using I-node (on process 0) routines [MPI_AVG] Summary of timings | reps wall avg wall tot -------------------------------------------------------------------------------------------- Build BoxMesh | 1 14.829620 14.829620 Build dofmap data | 2 0.279671 0.559342 Build sparsity | 1 0.182899 0.182899 Compute SCOTCH graph re-ordering | 2 0.005697 0.011395 Compute connectivity 2-3 | 1 0.003143 0.003143 Compute dof reordering map | 2 0.038108 0.076216 Compute entities of dim = 1 | 1 0.980690 0.980690 Compute entities of dim = 2 | 1 0.919411 0.919411 Compute graph partition (SCOTCH) | 1 13.617507 13.617507 Compute local part of mesh dual graph | 1 0.144127 0.144127 Compute local-to-local map | 1 0.001906 0.001906 Compute non-local part of mesh dual graph | 1 0.070060 0.070060 Compute-local-to-global links for global/local adjacency list | 1 0.000948 0.000948 Distribute in graph creation AdjacencyList | 1 0.052783 0.052783 Extract partition boundaries from SCOTCH graph | 1 0.002038 0.002038 Fetch float data from remote processes | 1 0.042766 0.042766 Get SCOTCH graph data | 1 0.000010 0.000010 Init dofmap from element dofmap | 2 0.017971 0.035943 PETSc Krylov solver | 1 8.973807 8.973807 SCOTCH: call SCOTCH_dgraphBuild | 1 0.014687 0.014687 SCOTCH: call SCOTCH_dgraphHalo | 1 0.015758 0.015758 SCOTCH: call SCOTCH_dgraphPart | 1 13.579418 13.579418 SCOTCH: call SCOTCH_graphBuild | 2 0.000016 0.000032 SCOTCH: call SCOTCH_graphOrder | 2 0.005386 0.010772 SparsityPattern::assemble | 1 0.213742 0.213742 TOPOLOGY: Create sets | 1 0.083264 0.083264 ZZZ Assemble | 1 1.275274 1.275274 ZZZ Assemble matrix | 1 0.206371 0.206371 ZZZ Assemble vector | 1 0.033861 0.033861 ZZZ Create Mesh | 1 14.830232 14.830232 ZZZ Create mesh entity permutations | 1 1.953972 1.953972 ZZZ FunctionSpace | 1 0.293037 0.293037 ZZZ Solve | 1 8.974163 8.974163 *** Number of Krylov iterations: 8 *** Solution norm: 43630.2 ************************************************************************************************************************ *** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document *** ************************************************************************************************************************ ---------------------------------------------- PETSc Performance Summary: ---------------------------------------------- /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu/dolfinx-scaling-test on a named ionos15-amd64 with 8 processors, by pbuilder1 Sun Jan 29 14:09:23 2023 Using Petsc Release Version 3.14.5, Mar 03, 2021 Max Max/Min Avg Total Time (sec): 2.738e+01 1.000 2.737e+01 Objects: 3.800e+01 1.000 3.800e+01 Flop: 3.991e+06 1.044 3.911e+06 3.129e+07 Flop/sec: 1.458e+05 1.044 1.429e+05 1.143e+06 MPI Messages: 1.330e+02 2.333 8.912e+01 7.130e+02 MPI Message Lengths: 5.968e+05 1.434 5.416e+03 3.862e+06 MPI Reductions: 6.900e+01 1.000 Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract) e.g., VecAXPY() for real vectors of length N --> 2N flop and VecAXPY() for complex vectors of length N --> 8N flop Summary of Stages: ----- Time ------ ----- Flop ------ --- Messages --- -- Message Lengths -- -- Reductions -- Avg %Total Avg %Total Count %Total Avg %Total Count %Total 0: Main Stage: 2.7372e+01 100.0% 3.1289e+07 100.0% 7.130e+02 100.0% 5.416e+03 100.0% 6.200e+01 89.9% ------------------------------------------------------------------------------------------------------------------------ See the 'Profiling' chapter of the users' manual for details on interpreting output. Phase summary info: Count: number of times phase was executed Time and Flop: Max - maximum over all processors Ratio - ratio of maximum to minimum over all processors Mess: number of messages sent AvgLen: average message length (bytes) Reduct: number of global reductions Global: entire computation Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop(). %T - percent time in this phase %F - percent flop in this phase %M - percent messages in this phase %L - percent message lengths in this phase %R - percent reductions in this phase Total Mflop/s: 10e-6 * (sum of flop over all processors)/(max time over all processors) ------------------------------------------------------------------------------------------------------------------------ Event Count Time (sec) Flop --- Global --- --- Stage ---- Total Max Ratio Max Ratio Max Ratio Mess AvgLen Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s ------------------------------------------------------------------------------------------------------------------------ --- Event Stage 0: Main Stage BuildTwoSided 4 1.0 1.0244e-01 8.5 0.00e+00 0.0 1.5e+02 4.0e+00 4.0e+00 0 0 21 0 6 0 0 21 0 6 0 BuildTwoSidedF 1 1.0 8.6516e-02699.6 0.00e+00 0.0 7.4e+01 1.5e+04 1.0e+00 0 0 10 28 1 0 0 10 28 2 0 MatMult 8 1.0 7.0347e-02 1.4 2.26e+06 1.0 3.0e+02 3.7e+03 0.0e+00 0 57 43 29 0 0 57 43 29 0 252 MatConvert 1 1.0 1.2595e-01 1.1 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 0 0 0 0 6 0 0 0 0 6 0 MatAssemblyBegin 2 1.0 8.9931e-02 7.5 0.00e+00 0.0 7.4e+01 1.5e+04 1.0e+00 0 0 10 28 1 0 0 10 28 2 0 MatAssemblyEnd 2 1.0 1.6351e-01 1.1 7.39e+03 1.7 7.6e+01 9.2e+02 9.0e+00 1 0 11 2 13 1 0 11 2 15 0 MatGetRowIJ 2 1.0 1.3391e-0511.8 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatZeroEntries 1 1.0 1.4580e-03 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 MatView 1 1.0 6.5324e-04 5.1 0.00e+00 0.0 0.0e+00 0.0e+00 1.0e+00 0 0 0 0 1 0 0 0 0 2 0 VecTDot 16 1.0 1.5035e-01 1.3 3.25e+05 1.1 0.0e+00 0.0e+00 1.6e+01 0 8 0 0 23 0 8 0 0 26 17 VecNorm 10 1.0 9.9645e-02 1.5 2.03e+05 1.1 0.0e+00 0.0e+00 1.0e+01 0 5 0 0 14 0 5 0 0 16 16 VecCopy 2 1.0 1.5253e-04 1.4 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecSet 12 1.0 2.6006e-04 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 VecAXPY 16 1.0 6.9879e-0314.9 3.25e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 8 0 0 0 0 8 0 0 0 364 VecAYPX 7 1.0 3.7471e-04 1.6 1.42e+05 1.1 0.0e+00 0.0e+00 0.0e+00 0 4 0 0 0 0 4 0 0 0 2971 VecScatterBegin 11 1.0 7.4363e-04 1.4 0.00e+00 0.0 4.2e+02 3.1e+03 0.0e+00 0 0 58 33 0 0 0 58 33 0 0 VecScatterEnd 11 1.0 8.0652e-02 1.7 1.10e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetGraph 3 1.0 1.6998e-05 1.6 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFSetUp 3 1.0 1.6205e-02 1.3 0.00e+00 0.0 2.2e+02 5.5e+02 3.0e+00 0 0 31 3 4 0 0 31 3 5 0 SFBcastOpBegin 10 1.0 6.5657e-04 1.5 0.00e+00 0.0 3.8e+02 3.2e+03 0.0e+00 0 0 53 32 0 0 0 53 32 0 0 SFBcastOpEnd 10 1.0 6.3856e-02 1.5 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFReduceBegin 1 1.0 3.1176e-05 1.3 0.00e+00 0.0 3.7e+01 1.4e+03 0.0e+00 0 0 5 1 0 0 0 5 1 0 0 SFReduceEnd 1 1.0 1.6748e-0269.2 1.10e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFPack 11 1.0 1.6177e-04 1.7 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 SFUnpack 11 1.0 3.6117e-05 1.5 1.10e+03 1.7 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 179 KSPSetUp 1 1.0 1.8367e-04 1.3 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0 KSPSolve 1 1.0 8.9731e+00 1.0 3.24e+06 1.0 3.0e+02 3.7e+03 2.9e+01 33 81 43 29 42 33 81 43 29 47 3 PCSetUp 1 1.0 3.2771e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 4.0e+00 12 0 0 0 6 12 0 0 0 6 0 PCApply 9 1.0 5.4371e+00 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 20 0 0 0 0 20 0 0 0 0 0 ------------------------------------------------------------------------------------------------------------------------ Memory usage is given in bytes: Object Type Creations Destructions Memory Descendants' Mem. Reports information only for process 0. --- Event Stage 0: Main Stage Matrix 4 4 2119428 0. Index Set 6 6 17964 0. IS L to G Mapping 4 4 176616 0. Vec Scatter 3 3 2448 0. Vector 14 14 376136 0. Star Forest Graph 3 3 3456 0. Krylov Solver 1 1 1488 0. Preconditioner 1 1 1456 0. Viewer 2 1 848 0. ======================================================================================================================== Average time to get PetscTime(): 6.69e-08 Average time for MPI_Barrier(): 4.9072e-06 Average time for zero size MPI_Send(): 5.53775e-06 #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries Compiled without FORTRAN kernels Compiled with full precision matrices (default) sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4 Configure options: --build=x86_64-linux-gnu --prefix=/usr --includedir=${prefix}/include --mandir=${prefix}/share/man --infodir=${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --with-option-checking=0 --with-silent-rules=0 --libdir=${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --with-maintainer-mode=0 --with-dependency-tracking=0 --with-debugging=0 --shared-library-extension=_real --with-shared-libraries --with-pic=1 --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 --with-cxx-dialect=C++11 --with-opencl=1 --with-blas-lib=-lblas --with-lapack-lib=-llapack --with-scalapack=1 --with-scalapack-lib=-lscalapack-openmpi --with-ptscotch=1 --with-ptscotch-include=/usr/include/scotch --with-ptscotch-lib="-lptesmumps -lptscotch -lptscotcherr" --with-fftw=1 --with-fftw-include="[]" --with-fftw-lib="-lfftw3 -lfftw3_mpi" --with-superlu_dist=1 --with-superlu_dist-include=/usr/include/superlu-dist --with-superlu_dist-lib=-lsuperlu_dist --with-hdf5-include=/usr/include/hdf5/openmpi --with-hdf5-lib="-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lhdf5 -lmpi" --CXX_LINKER_FLAGS=-Wl,--no-as-needed --with-hypre=1 --with-hypre-include=/usr/include/hypre --with-hypre-lib=-lHYPRE_core --with-mumps=1 --with-mumps-include="[]" --with-mumps-lib="-ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord" --with-suitesparse=1 --with-suitesparse-include=/usr/include/suitesparse --with-suitesparse-lib="-lumfpack -lamd -lcholmod -lklu" --with-superlu=1 --with-superlu-include=/usr/include/superlu --with-superlu-lib=-lsuperlu --prefix=/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real --PETSC_ARCH=x86_64-linux-gnu-real CFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC" FCFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" FFLAGS="-g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -fPIC" MAKEFLAGS=w ----------------------------------------- Libraries compiled on 2021-05-01 12:26:37 on reproducible Machine characteristics: Linux-4.19.0-16-amd64-x86_64-with-glibc2.31 Using PETSc directory: /usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real Using PETSc arch: ----------------------------------------- Using C compiler: mpicc -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 Using Fortran compiler: mpif90 -g -O2 -ffile-prefix-map=/build/petsc-jtWg2M/petsc-3.14.5+dfsg1=. -fstack-protector-strong -fPIC -ffree-line-length-0 -Wdate-time -D_FORTIFY_SOURCE=2 ----------------------------------------- Using include paths: -I/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/include -I/usr/include/hypre -I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist -I/usr/include/scotch -I/usr/include/hdf5/openmpi ----------------------------------------- Using C linker: mpicc Using Fortran linker: mpif90 Using libraries: -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -L/usr/lib/petscdir/petsc3.14/x86_64-linux-gnu-real/lib -lpetsc_real -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -L/usr/lib/x86_64-linux-gnu/openmpi/lib -L/usr/lib/x86_64-linux-gnu/openmpi/lib/fortran/gfortran -L/usr/lib/gcc/x86_64-linux-gnu/10 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lHYPRE_core -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lumfpack -lamd -lcholmod -lklu -lsuperlu -lsuperlu_dist -lfftw3 -lfftw3_mpi -llapack -lblas -lptesmumps -lptscotch -lptscotcherr -lhdf5 -lmpi -lm -lOpenCL -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lopen-rte -lopen-pal -lhwloc -levent_core -levent_pthreads -lutil -lgfortran -lm -lrt -lz -lgfortran -lm -lgfortran -lgcc_s -lquadmath -lpthread -lquadmath -lstdc++ -ldl ----------------------------------------- #PETSc Option Table entries: --ndofs 80000 --problem_type poisson --scaling_type strong -ksp_rtol 1.0e-8 -ksp_type cg -ksp_view -log_view -options_left -pc_hypre_boomeramg_strong_threshold 0.5 -pc_hypre_type boomeramg -pc_type hypre #End of PETSc Option Table entries WARNING! There are options you set that were not used! WARNING! could be spelling mistake, etc! There are 3 unused database options. They are: Option left: name:--ndofs value: 80000 Option left: name:--problem_type value: poisson Option left: name:--scaling_type value: strong make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--sourcedirectory=src dh_prep -O--buildsystem=cmake -O--sourcedirectory=src dh_auto_install -O--buildsystem=cmake -O--sourcedirectory=src cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/fenicsx-performance-tests-0.0\~git20210119.80e82ac/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/src" -B"/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test -- Set runtime path of "/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/debian/tmp/usr/bin/dolfinx-scaling-test" to "" make[1]: Leaving directory '/build/fenicsx-performance-tests-0.0~git20210119.80e82ac/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake -O--sourcedirectory=src dh_installdocs -O--buildsystem=cmake -O--sourcedirectory=src dh_installchangelogs -O--buildsystem=cmake -O--sourcedirectory=src dh_installman -O--buildsystem=cmake -O--sourcedirectory=src dh_installsystemduser -O--buildsystem=cmake -O--sourcedirectory=src dh_perl -O--buildsystem=cmake -O--sourcedirectory=src dh_link -O--buildsystem=cmake -O--sourcedirectory=src dh_strip_nondeterminism -O--buildsystem=cmake -O--sourcedirectory=src dh_compress -O--buildsystem=cmake -O--sourcedirectory=src dh_fixperms -O--buildsystem=cmake -O--sourcedirectory=src dh_missing -O--buildsystem=cmake -O--sourcedirectory=src dh_dwz -a -O--buildsystem=cmake -O--sourcedirectory=src dh_strip -a -O--buildsystem=cmake -O--sourcedirectory=src dh_makeshlibs -a -O--buildsystem=cmake -O--sourcedirectory=src dh_shlibdeps -a -O--buildsystem=cmake -O--sourcedirectory=src dh_installdeb -O--buildsystem=cmake -O--sourcedirectory=src dh_gencontrol -O--buildsystem=cmake -O--sourcedirectory=src dh_md5sums -O--buildsystem=cmake -O--sourcedirectory=src dh_builddeb -O--buildsystem=cmake -O--sourcedirectory=src dpkg-deb: building package 'fenicsx-performance-tests-dbgsym' in '../fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests' in '../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.deb'. dpkg-deb: building package 'fenicsx-performance-tests-source' in '../fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3687981 and its subdirectories I: Current time: Sun Jan 29 14:09:39 -12 2023 I: pbuilder-time-stamp: 1675044579 Mon Dec 27 19:46:30 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Mon Dec 27 19:46:30 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Mon Dec 27 19:54:47 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Mon Dec 27 19:54:47 UTC 2021 I: fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.changes: Format: 1.8 Date: Fri, 12 Feb 2021 16:35:21 +0100 Source: fenicsx-performance-tests Binary: fenicsx-performance-tests fenicsx-performance-tests-dbgsym fenicsx-performance-tests-source Architecture: amd64 all Version: 0.0~git20210119.80e82ac-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Team Changed-By: Drew Parsons Description: fenicsx-performance-tests - Performance test codes for FEniCS/DOLFIN-X (binaries) fenicsx-performance-tests-source - Performance test codes for FEniCS/DOLFIN-X (source) Changes: fenicsx-performance-tests (0.0~git20210119.80e82ac-1) unstable; urgency=medium . * New upstream snapshot. * Build-Depends: libdolfinx-dev (>= 2019.2.0~git20210130.c14cb0a~) Checksums-Sha1: 5a2f8f95645487d75beff61a2b8a06cb0d7be371 3420996 fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_amd64.deb 59cc5ebe9bb8eddea0c0a9e3bc175fe170bb433a 11832 fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb 546a5f42fdd7de925192364f5dfb03fab45efeae 13575 fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo cde5f848493f6d10c6422b884e676eeeca2989cb 122884 fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.deb Checksums-Sha256: f26cafba3141150a91b99605391efb753c89176c0aa3914a91a758b9941ae95a 3420996 fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_amd64.deb b738da449bcd4bc478f8ceae51561fc5d2338161fe0b27579129680c14beca6a 11832 fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb 2f9e24f2871cca5f9a954d370e9d58a15c11597601249e87c22cba34d3202e68 13575 fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo 1bd0aef92f8e51d0b0b05c5ca69d845b67e77a049be4f12a4cdab3e11e2aebc9 122884 fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.deb Files: 67321b796fd4b29770454e10c257c2ad 3420996 debug optional fenicsx-performance-tests-dbgsym_0.0~git20210119.80e82ac-1_amd64.deb bb71d86df914212cee78ec6730642967 11832 libdevel optional fenicsx-performance-tests-source_0.0~git20210119.80e82ac-1_all.deb 0331c7a41168e5fc11df3860cdd6e833 13575 libdevel optional fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo 1104d91fc3c499163a7a958044e4136a 122884 libdevel optional fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.deb Mon Dec 27 19:54:55 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/fenicsx-performance-tests_0.0~git20210119.80e82ac-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/fenicsx-performance-tests_0.0~git20210119.80e82ac-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/fenicsx-performance-tests_0.0~git20210119.80e82ac-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/b1/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.N4D5i606rk/b2/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 5.029s) 5.029s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.361s) 0.361s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Dec 27 19:58:01 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Dec 27 19:58:01 UTC 2021 I: fenicsx-performance-tests from bullseye built successfully and reproducibly on amd64. Mon Dec 27 19:58:05 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Dec 27 19:58:05 UTC 2021 I: Submitting 16K b1/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo.asc Mon Dec 27 19:58:07 UTC 2021 I: Submitting 16K b2/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo.asc Mon Dec 27 19:58:09 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Dec 27 19:58:09 UTC 2021 I: Done submitting .buildinfo files. Mon Dec 27 19:58:09 UTC 2021 I: Removing signed fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo.asc files: removed './b1/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo.asc' removed './b2/fenicsx-performance-tests_0.0~git20210119.80e82ac-1_amd64.buildinfo.asc'